1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Feng, S. Chen, J.K. Yu, H. Simon, J.A. Schreiber, S.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N N N 145 S C N 146 N C N 147 N O N 148 S C N 149 N C N 150 N C N 151 N C N 152 N O N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N N N 167 S C N 168 N C N 169 N O N 170 N C N 171 N C N 172 N C N 173 N C N 174 N O N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N N N 189 S C N 190 N C N 191 N O N 192 N C N 193 N C N 194 N C N 195 N C N 196 N N N 197 N O N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N N N 214 S C N 215 N C N 216 N O N 217 N C Y 218 N C Y 219 N C Y 220 N C Y 221 N C Y 222 N C Y 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C N 241 N C N 242 N C N 243 N O N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N N N 254 S C N 255 N C N 256 N O N 257 N C N 258 N O N 259 N O N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N N N 268 S C N 269 N C N 270 N O N 271 R C N 272 N O N 273 N C N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N N N 285 S C N 286 N C N 287 N O N 288 N C Y 289 N C Y 290 N C Y 291 N C Y 292 N N Y 293 N C Y 294 N C Y 295 N C Y 296 N C Y 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N N N 312 S C N 313 N C N 314 N O N 315 N C Y 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N C Y 321 N C N 322 N O N 323 N O N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N N N 336 S C N 337 N C N 338 N O N 339 N C N 340 N C N 341 N C N 342 N O N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing Y 214 N doub Y 215 N sing Y 216 N sing N 217 N sing Y 218 N doub N 219 N sing Y 220 N doub N 221 N sing Y 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N doub N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N doub N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing Y 283 N doub Y 284 N sing Y 285 N sing N 286 N sing Y 287 N doub Y 288 N sing Y 289 N sing N 290 N sing Y 291 N sing Y 292 N doub N 293 N sing Y 294 N doub N 295 N sing Y 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N doub N 307 N sing N 308 N sing N 309 N sing N 310 N sing Y 311 N doub Y 312 N sing Y 313 N sing N 314 N sing Y 315 N doub N 316 N sing Y 317 N doub N 318 N sing Y 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N doub N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing US Science SCIEAS 0038 0036-8075 266 1241 1247 7526465 Two binding orientations for peptides to the Src SH3 domain: development of a general model for SH3-ligand interactions. 1994 US Cell(Cambridge,Mass.) CELLB5 0998 0092-8674 76 933 Structural Basis for the Binding of Proline-Rich Peptides to SH3 Domains 1994 US Science SCIEAS 0038 0036-8075 258 1665 Solution Structure of the SH3 Domain of Src and Identification of its Ligand-Binding Site 1992 10.2210/pdb1prm/pdb pdb_00001prm 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 7003.641 C-SRC TYROSINE KINASE SH3 DOMAIN 1 man polymer 1026.234 PROLINE-RICH LIGAND PLR1 (AFAPPLPRR) 1 man polymer no no GALAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVAPS GALAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVAPS C polypeptide(L) no no AFAPPLPRR AFAPPLPRR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n chicken Gallus Escherichia sample SYNTHETIC OLIGO 9031 Gallus gallus 562 Escherichia coli PGEX-2T GENE: SYNTHETIC OLIGO database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Database references Derived calculations Other Data collection 1 0 1995-02-07 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-03-02 1 4 2024-05-22 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site Y BNL 1994-10-10 REL 1 BRUNGER refinement X-PLOR n 1 1 C n 2 2 C n 3 3 C n 4 4 C n 5 5 C n 6 6 C n 7 7 C n 8 8 C THR 9 n 9 THR 9 C PHE 10 n 10 PHE 10 C VAL 11 n 11 VAL 11 C ALA 12 n 12 ALA 12 C LEU 13 n 13 LEU 13 C TYR 14 n 14 TYR 14 C ASP 15 n 15 ASP 15 C TYR 16 n 16 TYR 16 C GLU 17 n 17 GLU 17 C SER 18 n 18 SER 18 C ARG 19 n 19 ARG 19 C THR 20 n 20 THR 20 C GLU 21 n 21 GLU 21 C THR 22 n 22 THR 22 C ASP 23 n 23 ASP 23 C LEU 24 n 24 LEU 24 C SER 25 n 25 SER 25 C PHE 26 n 26 PHE 26 C LYS 27 n 27 LYS 27 C LYS 28 n 28 LYS 28 C GLY 29 n 29 GLY 29 C GLU 30 n 30 GLU 30 C ARG 31 n 31 ARG 31 C LEU 32 n 32 LEU 32 C GLN 33 n 33 GLN 33 C ILE 34 n 34 ILE 34 C VAL 35 n 35 VAL 35 C ASN 36 n 36 ASN 36 C ASN 37 n 37 ASN 37 C THR 38 n 38 THR 38 C GLU 39 n 39 GLU 39 C GLY 40 n 40 GLY 40 C ASP 41 n 41 ASP 41 C TRP 42 n 42 TRP 42 C TRP 43 n 43 TRP 43 C LEU 44 n 44 LEU 44 C ALA 45 n 45 ALA 45 C HIS 46 n 46 HIS 46 C SER 47 n 47 SER 47 C LEU 48 n 48 LEU 48 C THR 49 n 49 THR 49 C THR 50 n 50 THR 50 C GLY 51 n 51 GLY 51 C GLN 52 n 52 GLN 52 C THR 53 n 53 THR 53 C GLY 54 n 54 GLY 54 C TYR 55 n 55 TYR 55 C ILE 56 n 56 ILE 56 C PRO 57 n 57 PRO 57 C SER 58 n 58 SER 58 C ASN 59 n 59 ASN 59 C TYR 60 n 60 TYR 60 C VAL 61 n 61 VAL 61 C ALA 62 n 62 ALA 62 C PRO 63 n 63 PRO 63 C SER 64 n 64 SER 64 C ALA 71 n 1 ALA 71 A PHE 72 n 2 PHE 72 A ALA 73 n 3 ALA 73 A PRO 74 n 4 PRO 74 A PRO 75 n 5 PRO 75 A LEU 76 n 6 LEU 76 A PRO 77 n 7 PRO 77 A ARG 78 n 8 ARG 78 A ARG 79 n 9 ARG 79 A author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 C O VAL 11 A O VAL 11 C N ALA 62 A N ALA 62 C O GLN 33 A O GLN 33 C N HIS 46 A N HIS 46 C O TRP 43 A O TRP 43 C N ILE 56 A N ILE 56 1 C GLY 1 A GLY 1 1 Y 1 C ALA 2 A ALA 2 1 Y 1 C LEU 3 A LEU 3 1 Y 1 C ALA 4 A ALA 4 1 Y 1 C GLY 5 A GLY 5 1 Y 1 C GLY 6 A GLY 6 1 Y 1 C VAL 7 A VAL 7 1 Y 1 C THR 8 A THR 8 1 Y 1 -6.43 1.00 110.10 103.67 C C C CG CD1 NE1 TRP TRP TRP 42 42 42 N 1 6.10 0.90 109.00 115.10 C C C CD1 NE1 CE2 TRP TRP TRP 42 42 42 N 1 8.44 1.10 130.40 138.84 C C C NE1 CE2 CZ2 TRP TRP TRP 42 42 42 N 1 -6.27 1.00 107.30 101.03 C C C NE1 CE2 CD2 TRP TRP TRP 42 42 42 N 1 -6.47 1.00 110.10 103.63 C C C CG CD1 NE1 TRP TRP TRP 43 43 43 N 1 6.09 0.90 109.00 115.09 C C C CD1 NE1 CE2 TRP TRP TRP 43 43 43 N 1 8.86 1.10 130.40 139.26 C C C NE1 CE2 CZ2 TRP TRP TRP 43 43 43 N 1 -6.46 1.00 107.30 100.84 C C C NE1 CE2 CD2 TRP TRP TRP 43 43 43 N 1 C C CG ND1 HIS HIS 46 46 -0.102 0.015 1.369 1.267 N 1 C GLU 17 -106.89 76.75 1 C VAL 35 -99.71 -82.87 1 C ASN 37 -163.69 101.94 1 C THR 38 -150.11 6.70 1 C GLU 39 -167.23 -75.08 1 C THR 49 -73.52 -70.81 model building X-PLOR refinement X-PLOR phasing X-PLOR TWO BINDING ORIENTATIONS FOR PEPTIDES TO SRC SH3 DOMAIN: DEVELOPMENT OF A GENERAL MODEL FOR SH3-LIGAND INTERACTIONS 1 N N 2 N N COMPLEX (SIGNAL TRANSDUCTION/PEPTIDE) COMPLEX (SIGNAL TRANSDUCTION-PEPTIDE), COMPLEX (SIGNAL TRANSDUCTION-PEPTIDE) complex SRC_CHICK UNP 1 76 P00523 1PRM PDB 2 1PRM 76 139 1PRM 1 64 P00523 C 1 1 64 71 79 1PRM 71 79 1PRM A 2 1 9 2 3 anti-parallel anti-parallel anti-parallel C PHE 10 A PHE 10 C ALA 12 A ALA 12 C VAL 61 A VAL 61 C PRO 63 A PRO 63 C LEU 32 A LEU 32 C ILE 34 A ILE 34 C TRP 43 A TRP 43 C SER 47 A SER 47 C THR 53 A THR 53 C ILE 56 A ILE 56 1 P 1