0.015853 0.009153 0.000000 0.000000 0.018305 0.000000 0.000000 0.000000 0.011950 0.00000 0.00000 0.00000 Park, C.H. Kong, X.P. Dealwis, C.G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 63.080 63.080 83.680 C34 H37 N3 O6 583.674 (5R,6R)-2,4-BIS-(4-HYDROXY-3-METHOXYBENZYL)-1,5-DIBENZYL-3-OXO-6-HYDROXY-1,2,4-TRIAZACYCLOHEPTANE A-98881 non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 N N N 3 N C N 4 N O N 5 N N N 6 R C N 7 R C N 8 N O N 9 N C N 10 N C Y 11 N C Y 12 N C Y 13 N C Y 14 N C Y 15 N C Y 16 N C N 17 N C Y 18 N C Y 19 N C Y 20 N C Y 21 N C Y 22 N C Y 23 N C N 24 N C Y 25 N C Y 26 N C Y 27 N C Y 28 N C Y 29 N C Y 30 N C N 31 N O N 32 N O N 33 N C N 34 N C Y 35 N C Y 36 N C Y 37 N C Y 38 N C Y 39 N C Y 40 N C N 41 N O N 42 N O N 43 N C N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N N N 82 S C N 83 N C N 84 N O N 85 N C N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N N N 102 N C N 103 N N N 104 N N N 105 N O N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N N N 122 S C N 123 N C N 124 N O N 125 N C N 126 N C N 127 N O N 128 N N N 129 N O N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C N 143 N C N 144 N O N 145 N O N 146 N O N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N N N 155 R C N 156 N C N 157 N O N 158 N C N 159 N S N 160 N O N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N N N 169 S C N 170 N C N 171 N O N 172 N C N 173 N C N 174 N C N 175 N O N 176 N N N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N N N 189 S C N 190 N C N 191 N O N 192 N C N 193 N C N 194 N C N 195 N O N 196 N O N 197 N O N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N N N 208 N C N 209 N C N 210 N O N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 N C Y 222 N C Y 223 N N Y 224 N C Y 225 N C Y 226 N N N 227 N O N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N O N 239 N H N 240 N H N 241 N N N 242 S C N 243 N C N 244 N O N 245 S C N 246 N C N 247 N C N 248 N C N 249 N O N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N N N 264 S C N 265 N C N 266 N O N 267 N C N 268 N C N 269 N C N 270 N C N 271 N O N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N N N 286 S C N 287 N C N 288 N O N 289 N C N 290 N C N 291 N C N 292 N C N 293 N N N 294 N O N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N N N 311 S C N 312 N C N 313 N O N 314 N C N 315 N C N 316 N S N 317 N C N 318 N O N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N N N 331 S C N 332 N C N 333 N O N 334 N C Y 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N C Y 340 N C N 341 N O N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N N N 354 S C N 355 N C N 356 N O N 357 N C N 358 N C N 359 N C N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N N N 371 S C N 372 N C N 373 N O N 374 R C N 375 N O N 376 N C N 377 N O N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N N N 388 S C N 389 N C N 390 N O N 391 N C Y 392 N C Y 393 N C Y 394 N C Y 395 N N Y 396 N C Y 397 N C Y 398 N C Y 399 N C Y 400 N C N 401 N O N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N N N 415 S C N 416 N C N 417 N O N 418 N C Y 419 N C Y 420 N C Y 421 N C Y 422 N C Y 423 N C Y 424 N C N 425 N O N 426 N O N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N N N 439 S C N 440 N C N 441 N O N 442 N C N 443 N C N 444 N C N 445 N O N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N doub N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing Y 22 N doub Y 23 N sing Y 24 N sing N 25 N sing Y 26 N doub N 27 N sing Y 28 N sing N 29 N sing Y 30 N doub N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing Y 36 N doub Y 37 N sing Y 38 N sing N 39 N sing Y 40 N doub N 41 N sing Y 42 N sing N 43 N sing Y 44 N doub N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing Y 50 N doub Y 51 N sing Y 52 N sing N 53 N sing Y 54 N doub N 55 N sing Y 56 N sing N 57 N sing Y 58 N doub N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing Y 69 N doub Y 70 N sing Y 71 N sing N 72 N sing Y 73 N doub N 74 N sing Y 75 N sing N 76 N sing Y 77 N doub N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N doub N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N doub N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N doub N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N doub N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N doub N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N doub N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N doub N 220 N sing N 221 N sing N 222 N sing N 223 N sing Y 224 N sing Y 225 N doub Y 226 N doub N 227 N sing Y 228 N sing N 229 N sing Y 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N doub N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N doub N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N doub N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N doub N 328 N sing N 329 N sing N 330 N sing N 331 N sing Y 332 N doub Y 333 N sing Y 334 N sing N 335 N sing Y 336 N doub N 337 N sing Y 338 N doub N 339 N sing Y 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N doub N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N doub N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N doub N 384 N sing N 385 N sing N 386 N sing N 387 N sing Y 388 N doub Y 389 N sing Y 390 N sing N 391 N sing Y 392 N doub Y 393 N sing Y 394 N sing N 395 N sing Y 396 N sing Y 397 N doub N 398 N sing Y 399 N doub N 400 N sing Y 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N doub N 412 N sing N 413 N sing N 414 N sing N 415 N sing Y 416 N doub Y 417 N sing Y 418 N sing N 419 N sing Y 420 N doub N 421 N sing Y 422 N doub N 423 N sing Y 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N doub N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing US J.Med.Chem. JMCMAR 0151 0022-2623 39 392 397 10.1021/jm9507183 8558507 A novel, picomolar inhibitor of human immunodeficiency virus type 1 protease. 1996 10.2210/pdb1pro/pdb pdb_00001pro 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 IMAGE PLATE 1994-02-19 RIGAKU M x-ray 1 1.5418 1.0 1.5418 10830.781 HIV-1 PROTEASE 3.4.23.16 2 man polymer 583.674 (5R,6R)-2,4-BIS-(4-HYDROXY-3-METHOXYBENZYL)-1,5-DIBENZYL-3-OXO-6-HYDROXY-1,2,4-TRIAZACYCLOHEPTANE 1 syn non-polymer 18.015 water 40 nat water no no PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus SCS-1 Escherichia sample 11676 Human immunodeficiency virus 1 562 Escherichia coli SCS-1/PBS7-CI 2.22 44. chem_comp_atom chem_comp_bond database_2 pdbx_database_status struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other 1 0 1996-08-17 1 1 2008-03-24 1 2 2011-07-13 1 3 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1995-07-18 REL A88 (5R,6R)-2,4-BIS-(4-HYDROXY-3-METHOXYBENZYL)-1,5-DIBENZYL-3-OXO-6-HYDROXY-1,2,4-TRIAZACYCLOHEPTANE HOH water A88 301 2 A88 A88 301 A HOH 402 3 HOH HOH 402 A HOH 404 3 HOH HOH 404 A HOH 406 3 HOH HOH 406 A HOH 408 3 HOH HOH 408 A HOH 409 3 HOH HOH 409 A HOH 411 3 HOH HOH 411 A HOH 420 3 HOH HOH 420 A HOH 424 3 HOH HOH 424 A HOH 426 3 HOH HOH 426 A HOH 429 3 HOH HOH 429 A HOH 432 3 HOH HOH 432 A HOH 434 3 HOH HOH 434 A HOH 437 3 HOH HOH 437 A HOH 439 3 HOH HOH 439 A HOH 401 3 HOH HOH 401 B HOH 403 3 HOH HOH 403 B HOH 405 3 HOH HOH 405 B HOH 407 3 HOH HOH 407 B HOH 410 3 HOH HOH 410 B HOH 412 3 HOH HOH 412 B HOH 413 3 HOH HOH 413 B HOH 414 3 HOH HOH 414 B HOH 415 3 HOH HOH 415 B HOH 416 3 HOH HOH 416 B HOH 417 3 HOH HOH 417 B HOH 418 3 HOH HOH 418 B HOH 419 3 HOH HOH 419 B HOH 421 3 HOH HOH 421 B HOH 422 3 HOH HOH 422 B HOH 423 3 HOH HOH 423 B HOH 425 3 HOH HOH 425 B HOH 427 3 HOH HOH 427 B HOH 428 3 HOH HOH 428 B HOH 430 3 HOH HOH 430 B HOH 431 3 HOH HOH 431 B HOH 433 3 HOH HOH 433 B HOH 435 3 HOH HOH 435 B HOH 436 3 HOH HOH 436 B HOH 438 3 HOH HOH 438 B HOH 440 3 HOH HOH 440 B PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A GLN 7 n 7 GLN 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A LEU 33 n 33 LEU 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A MET 36 n 36 MET 36 A ASN 37 n 37 ASN 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ARG 41 n 41 ARG 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A MET 46 n 46 MET 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A ILE 54 n 54 ILE 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A ILE 62 n 62 ILE 62 A LEU 63 n 63 LEU 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A CYS 67 n 67 CYS 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A ALA 71 n 71 ALA 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A VAL 82 n 82 VAL 82 A ASN 83 n 83 ASN 83 A ILE 84 n 84 ILE 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A LEU 90 n 90 LEU 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A CYS 95 n 95 CYS 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A PRO 1 n 1 PRO 1 B GLN 2 n 2 GLN 2 B ILE 3 n 3 ILE 3 B THR 4 n 4 THR 4 B LEU 5 n 5 LEU 5 B TRP 6 n 6 TRP 6 B GLN 7 n 7 GLN 7 B ARG 8 n 8 ARG 8 B PRO 9 n 9 PRO 9 B LEU 10 n 10 LEU 10 B VAL 11 n 11 VAL 11 B THR 12 n 12 THR 12 B ILE 13 n 13 ILE 13 B LYS 14 n 14 LYS 14 B ILE 15 n 15 ILE 15 B GLY 16 n 16 GLY 16 B GLY 17 n 17 GLY 17 B GLN 18 n 18 GLN 18 B LEU 19 n 19 LEU 19 B LYS 20 n 20 LYS 20 B GLU 21 n 21 GLU 21 B ALA 22 n 22 ALA 22 B LEU 23 n 23 LEU 23 B LEU 24 n 24 LEU 24 B ASP 25 n 25 ASP 25 B THR 26 n 26 THR 26 B GLY 27 n 27 GLY 27 B ALA 28 n 28 ALA 28 B ASP 29 n 29 ASP 29 B ASP 30 n 30 ASP 30 B THR 31 n 31 THR 31 B VAL 32 n 32 VAL 32 B LEU 33 n 33 LEU 33 B GLU 34 n 34 GLU 34 B GLU 35 n 35 GLU 35 B MET 36 n 36 MET 36 B ASN 37 n 37 ASN 37 B LEU 38 n 38 LEU 38 B PRO 39 n 39 PRO 39 B GLY 40 n 40 GLY 40 B ARG 41 n 41 ARG 41 B TRP 42 n 42 TRP 42 B LYS 43 n 43 LYS 43 B PRO 44 n 44 PRO 44 B LYS 45 n 45 LYS 45 B MET 46 n 46 MET 46 B ILE 47 n 47 ILE 47 B GLY 48 n 48 GLY 48 B GLY 49 n 49 GLY 49 B ILE 50 n 50 ILE 50 B GLY 51 n 51 GLY 51 B GLY 52 n 52 GLY 52 B PHE 53 n 53 PHE 53 B ILE 54 n 54 ILE 54 B LYS 55 n 55 LYS 55 B VAL 56 n 56 VAL 56 B ARG 57 n 57 ARG 57 B GLN 58 n 58 GLN 58 B TYR 59 n 59 TYR 59 B ASP 60 n 60 ASP 60 B GLN 61 n 61 GLN 61 B ILE 62 n 62 ILE 62 B LEU 63 n 63 LEU 63 B ILE 64 n 64 ILE 64 B GLU 65 n 65 GLU 65 B ILE 66 n 66 ILE 66 B CYS 67 n 67 CYS 67 B GLY 68 n 68 GLY 68 B HIS 69 n 69 HIS 69 B LYS 70 n 70 LYS 70 B ALA 71 n 71 ALA 71 B ILE 72 n 72 ILE 72 B GLY 73 n 73 GLY 73 B THR 74 n 74 THR 74 B VAL 75 n 75 VAL 75 B LEU 76 n 76 LEU 76 B VAL 77 n 77 VAL 77 B GLY 78 n 78 GLY 78 B PRO 79 n 79 PRO 79 B THR 80 n 80 THR 80 B PRO 81 n 81 PRO 81 B VAL 82 n 82 VAL 82 B ASN 83 n 83 ASN 83 B ILE 84 n 84 ILE 84 B ILE 85 n 85 ILE 85 B GLY 86 n 86 GLY 86 B ARG 87 n 87 ARG 87 B ASN 88 n 88 ASN 88 B LEU 89 n 89 LEU 89 B LEU 90 n 90 LEU 90 B THR 91 n 91 THR 91 B GLN 92 n 92 GLN 92 B ILE 93 n 93 ILE 93 B GLY 94 n 94 GLY 94 B CYS 95 n 95 CYS 95 B THR 96 n 96 THR 96 B LEU 97 n 97 LEU 97 B ASN 98 n 98 ASN 98 B PHE 99 n 99 PHE 99 B author_and_software_defined_assembly PISA 2 dimeric 4930 -28 9270 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLN 18 A O GLN 18 A N ILE 15 A N ILE 15 A O LYS 14 A O LYS 14 A N GLU 65 A N GLU 65 A O ILE 62 A O ILE 62 A N GLY 73 A N GLY 73 A O LYS 43 A O LYS 43 A N GLN 58 A N GLN 58 A O ARG 57 A O ARG 57 A N VAL 77 A N VAL 77 A O THR 96 A O THR 96 B N ASN 98 B N ASN 98 B O GLN 18 B O GLN 18 B N ILE 15 B N ILE 15 B O LYS 14 B O LYS 14 B N GLU 65 B N GLU 65 B O ILE 62 B O ILE 62 B N GLY 73 B N GLY 73 B O LYS 43 B O LYS 43 B N GLN 58 B N GLN 58 B O ARG 57 B O ARG 57 B N VAL 77 B N VAL 77 1 5.91 0.80 106.30 112.21 A A A CD1 CG CD2 TRP TRP TRP 6 6 6 N 1 -5.77 0.80 107.30 101.53 A A A CE2 CD2 CG TRP TRP TRP 6 6 6 N 1 -13.69 2.20 111.50 97.81 A A A N CA CB VAL VAL VAL 11 11 11 N 1 6.88 0.80 106.30 113.18 A A A CD1 CG CD2 TRP TRP TRP 42 42 42 N 1 -6.09 0.80 107.30 101.21 A A A CE2 CD2 CG TRP TRP TRP 42 42 42 N 1 4.73 0.50 120.30 125.03 A A A NE CZ NH1 ARG ARG ARG 87 87 87 N 1 6.27 0.80 106.30 112.57 B B B CD1 CG CD2 TRP TRP TRP 6 6 6 N 1 -5.94 0.80 107.30 101.36 B B B CE2 CD2 CG TRP TRP TRP 6 6 6 N 1 -12.38 2.00 111.60 99.22 B B B CB CA C ILE ILE ILE 15 15 15 N 1 14.05 2.30 115.30 129.35 B B B CA CB CG LEU LEU LEU 23 23 23 N 1 14.08 2.20 113.40 127.48 B B B CA CB CG GLU GLU GLU 34 34 34 N 1 6.71 0.80 106.30 113.01 B B B CD1 CG CD2 TRP TRP TRP 42 42 42 N 1 -6.08 0.80 107.30 101.22 B B B CE2 CD2 CG TRP TRP TRP 42 42 42 N 1 3.05 0.50 120.30 123.35 B B B NE CZ NH1 ARG ARG ARG 87 87 87 N 1 A A NE2 CD2 HIS HIS 69 69 -0.067 0.011 1.373 1.306 N 28.7 0.3100000 0.1850000 0.1850000 1.8 10.0 16426 93. 1 2. 0.18 1.8 10.0 120 1683 43 0 1520 0.014 2.7 25. 1.1 1PRO 16426 2. 0.0496000 1 4.7 93. model building X-PLOR refinement X-PLOR data reduction R-AXIS (HIGASHI/RIGAKU) phasing X-PLOR HIV-1 PROTEASE DIMER COMPLEXED WITH A-98881 1 N N 1 N N 2 N N 3 N N 3 N N A ARG 87 A ARG 87 HELX_P A LEU 90 A LEU 90 1 1 4 B ARG 87 B ARG 87 HELX_P B LEU 90 B LEU 90 1 2 4 HYDROLASE (ASPARTIC PROTEASE) AIDS, POLYPROTEIN, HYDROLASE, ASPARTIC PROTEASE, ENDONUCLEASE, RNA-DIRECTED DNA POLYMERASE, HYDROLASE (ASPARTIC PROTEASE) POL_HV1Z2 UNP 1 1 P12499 DGQYNNSLSEAGADRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVR QYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEIC TEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSV PLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQH RTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTV 24 122 1PRO 1 99 P12499 A 1 1 99 24 122 1PRO 1 99 P12499 B 1 1 99 4 3 2 4 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLN 18 A GLN 18 A LEU 23 A LEU 23 A LEU 10 A LEU 10 A ILE 15 A ILE 15 A ILE 62 A ILE 62 A ILE 66 A ILE 66 A HIS 69 A HIS 69 A GLY 73 A GLY 73 A LYS 43 A LYS 43 A GLY 49 A GLY 49 A GLY 52 A GLY 52 A TYR 59 A TYR 59 A VAL 75 A VAL 75 A GLY 78 A GLY 78 A THR 96 A THR 96 A ASN 98 A ASN 98 B THR 96 B THR 96 B ASN 98 B ASN 98 B GLN 18 B GLN 18 B LEU 23 B LEU 23 B LEU 10 B LEU 10 B ILE 15 B ILE 15 B ILE 62 B ILE 62 B ILE 66 B ILE 66 B HIS 69 B HIS 69 B GLY 73 B GLY 73 B LYS 43 B LYS 43 B GLY 49 B GLY 49 B GLY 52 B GLY 52 B TYR 59 B TYR 59 B VAL 75 B VAL 75 B GLY 78 B GLY 78 BINDING SITE FOR RESIDUE A88 A 301 A A88 301 Software 19 A ARG 8 A ARG 8 19 1_555 A ASP 25 A ASP 25 19 1_555 A GLY 27 A GLY 27 19 1_555 A ALA 28 A ALA 28 19 1_555 A ASP 29 A ASP 29 19 1_555 A ASP 30 A ASP 30 19 1_555 A GLY 48 A GLY 48 19 1_555 A GLY 49 A GLY 49 19 1_555 A ILE 50 A ILE 50 19 1_555 A PRO 81 A PRO 81 19 1_555 A VAL 82 A VAL 82 19 1_555 B ASP 25 B ASP 25 19 1_555 B GLY 27 B GLY 27 19 1_555 B ALA 28 B ALA 28 19 1_555 B ASP 29 B ASP 29 19 1_555 B ASP 30 B ASP 30 19 1_555 B GLY 49 B GLY 49 19 1_555 B ILE 50 B ILE 50 19 1_555 B PRO 81 B PRO 81 19 1_555 169 P 61