1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Nagadoi, A.
Morikawa, S.
Nakamura, H.
Enari, M.
Kobayashi, K.
Yamamoto, H.
Sampei, G.
Mizobuchi, K.
Schumacher, M.A.
Brennan, R.G.
Nishimura, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
3
1217
1224
10.1016/S0969-2126(01)00257-X
8591032
Structural comparison of the free and DNA-bound forms of the purine repressor DNA-binding domain.
1995
US
Science
SCIEAS
0038
0036-8075
266
763
Crystal Structure of LacI Member, PurR, Bound to DNA: Minor Groove Binding by Alpha Helices
1994
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
6179.133
PURINE REPRESSOR
DNA-BINDING
1
man
polymer
no
no
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKV
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
Escherichia coli
sample
562
Escherichia coli
PURR
511693
Escherichia coli BL21
BL21
PAR2156NCOI
repository
Initial release
Version format compliance
Version format compliance
Database references
1
0
1996-03-08
1
1
2008-03-24
1
2
2011-07-13
1
3
2012-02-22
Y
1995-05-08
REL
REL
20
NAKAI,KIDERA,NAKAMURA
refinement
EMBOSS
MORIKAMI,NAKAI,KIDERA,SAITO,NAKAMURA
refinement
PRESTO
MET
1
n
1
MET
1
A
ALA
2
n
2
ALA
2
A
THR
3
n
3
THR
3
A
ILE
4
n
4
ILE
4
A
LYS
5
n
5
LYS
5
A
ASP
6
n
6
ASP
6
A
VAL
7
n
7
VAL
7
A
ALA
8
n
8
ALA
8
A
LYS
9
n
9
LYS
9
A
ARG
10
n
10
ARG
10
A
ALA
11
n
11
ALA
11
A
ASN
12
n
12
ASN
12
A
VAL
13
n
13
VAL
13
A
SER
14
n
14
SER
14
A
THR
15
n
15
THR
15
A
THR
16
n
16
THR
16
A
THR
17
n
17
THR
17
A
VAL
18
n
18
VAL
18
A
SER
19
n
19
SER
19
A
HIS
20
n
20
HIS
20
A
VAL
21
n
21
VAL
21
A
ILE
22
n
22
ILE
22
A
ASN
23
n
23
ASN
23
A
LYS
24
n
24
LYS
24
A
THR
25
n
25
THR
25
A
ARG
26
n
26
ARG
26
A
PHE
27
n
27
PHE
27
A
VAL
28
n
28
VAL
28
A
ALA
29
n
29
ALA
29
A
GLU
30
n
30
GLU
30
A
GLU
31
n
31
GLU
31
A
THR
32
n
32
THR
32
A
ARG
33
n
33
ARG
33
A
ASN
34
n
34
ASN
34
A
ALA
35
n
35
ALA
35
A
VAL
36
n
36
VAL
36
A
TRP
37
n
37
TRP
37
A
ALA
38
n
38
ALA
38
A
ALA
39
n
39
ALA
39
A
ILE
40
n
40
ILE
40
A
LYS
41
n
41
LYS
41
A
GLU
42
n
42
GLU
42
A
LEU
43
n
43
LEU
43
A
HIS
44
n
44
HIS
44
A
TYR
45
n
45
TYR
45
A
SER
46
n
46
SER
46
A
PRO
47
n
47
PRO
47
A
SER
48
n
48
SER
48
A
ALA
49
n
49
ALA
49
A
VAL
50
n
50
VAL
50
A
ALA
51
n
51
ALA
51
A
ARG
52
n
52
ARG
52
A
SER
53
n
53
SER
53
A
LEU
54
n
54
LEU
54
A
LYS
55
n
55
LYS
55
A
VAL
56
n
56
VAL
56
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ARG
33
0.079
SIDE CHAIN
2
A
ARG
10
0.081
SIDE CHAIN
6
A
ARG
33
0.084
SIDE CHAIN
7
A
ARG
33
0.145
SIDE CHAIN
15
A
ARG
33
0.108
SIDE CHAIN
20
A
ARG
33
0.080
SIDE CHAIN
1
A
THR
3
-158.00
-64.74
1
A
ILE
4
-152.03
-40.76
1
A
ASN
12
-123.66
-145.41
1
A
GLU
30
69.08
-32.16
1
A
HIS
44
65.03
118.72
1
A
TYR
45
-156.46
50.32
1
A
ALA
49
64.78
91.00
1
A
ARG
52
-163.26
-143.80
1
A
SER
53
-169.11
112.60
1
A
LYS
55
57.20
-148.52
2
A
ALA
2
71.47
146.20
2
A
THR
3
-163.10
-51.78
2
A
ASN
12
60.90
63.11
2
A
VAL
13
-137.20
-109.48
2
A
LYS
24
-153.74
-89.89
2
A
THR
25
173.53
-41.75
2
A
PHE
27
74.19
126.18
2
A
GLU
30
68.50
-65.81
2
A
TYR
45
32.42
57.95
2
A
ALA
49
-148.77
-47.54
2
A
ALA
51
-161.91
-42.80
2
A
ARG
52
-146.94
-145.10
2
A
SER
53
-172.26
-62.22
3
A
THR
3
-123.89
-59.93
3
A
THR
15
179.71
-33.02
3
A
THR
25
-115.55
-87.06
3
A
ARG
26
-94.73
54.60
3
A
ALA
29
54.55
-143.33
3
A
LEU
43
-72.38
-92.32
3
A
HIS
44
-158.79
18.00
3
A
SER
46
-158.64
85.72
3
A
ALA
51
-165.46
-112.19
4
A
ALA
2
-65.49
80.58
4
A
THR
3
-156.82
29.33
4
A
TYR
45
-58.64
108.23
4
A
SER
48
73.78
105.12
4
A
ALA
49
69.84
-175.44
4
A
ARG
52
76.65
-55.48
4
A
LYS
55
-159.76
41.73
5
A
ASN
12
75.07
149.19
5
A
VAL
13
64.02
-86.60
5
A
SER
14
-174.88
-162.74
5
A
LYS
24
70.56
60.09
5
A
THR
25
-87.33
-80.35
5
A
ARG
52
-155.83
-138.60
5
A
LYS
55
56.21
73.83
6
A
ASN
12
85.26
145.91
6
A
VAL
13
65.24
-116.60
6
A
SER
14
-166.25
-161.69
6
A
ALA
29
60.73
-179.91
6
A
HIS
44
76.93
134.28
6
A
PRO
47
-69.63
72.73
7
A
ASN
12
-147.94
-82.65
7
A
VAL
13
-140.68
-66.87
7
A
LYS
24
174.08
102.90
7
A
ARG
26
74.68
-164.00
7
A
HIS
44
73.87
138.47
7
A
PRO
47
-68.67
-172.59
7
A
LEU
54
55.39
-105.07
8
A
ALA
2
-161.10
59.18
8
A
ASN
12
76.53
-35.79
8
A
GLU
30
72.56
-65.64
8
A
LEU
43
-83.78
-82.54
8
A
HIS
44
161.80
145.31
8
A
VAL
50
68.30
149.03
8
A
LEU
54
56.43
72.54
9
A
ASN
12
-135.74
-121.36
9
A
SER
14
-167.48
-164.04
9
A
HIS
44
40.62
84.18
9
A
TYR
45
-56.69
108.12
9
A
SER
46
-165.65
85.13
10
A
ALA
2
-67.26
96.69
10
A
THR
3
-142.42
-77.89
10
A
ILE
4
-140.44
-32.77
10
A
ASN
12
-140.79
-88.36
10
A
VAL
13
-139.47
-57.35
10
A
THR
25
-98.24
-84.40
10
A
ALA
29
65.11
-178.89
10
A
HIS
44
76.17
137.62
10
A
ARG
52
-153.53
50.52
10
A
LYS
55
55.50
-121.22
11
A
ALA
2
-163.53
-79.12
11
A
THR
3
178.01
-42.52
11
A
ILE
4
-146.34
-20.56
11
A
LYS
5
-48.01
-70.26
11
A
GLU
30
65.82
-26.65
11
A
LEU
43
-92.99
-94.03
11
A
HIS
44
-159.79
26.41
11
A
SER
46
-167.21
76.60
11
A
ALA
49
-167.93
-56.01
11
A
ALA
51
-169.24
-58.55
12
A
ILE
4
80.53
-23.88
12
A
ASN
12
-164.15
-93.73
12
A
VAL
13
-97.94
-118.63
12
A
LYS
24
71.45
53.09
12
A
GLU
30
63.79
-68.68
12
A
LEU
43
-77.64
-92.00
12
A
HIS
44
165.30
75.87
12
A
ARG
52
-165.07
-141.27
13
A
ALA
2
-53.57
-77.93
13
A
THR
3
64.23
167.75
13
A
ILE
4
77.75
-40.79
13
A
ASN
12
75.52
150.83
13
A
VAL
13
82.94
175.10
13
A
LYS
24
30.15
65.39
13
A
THR
25
-104.44
-83.70
13
A
ALA
29
65.26
176.25
13
A
HIS
44
71.73
110.66
13
A
ALA
51
-153.00
84.73
14
A
THR
3
-135.01
-53.08
14
A
ILE
4
-177.19
-35.52
14
A
ASN
12
179.99
131.00
14
A
VAL
13
52.18
-94.52
14
A
THR
25
-97.95
-82.89
14
A
ARG
52
-158.21
38.25
14
A
LYS
55
-139.63
-51.71
15
A
ALA
2
60.43
-173.91
15
A
THR
3
84.51
-176.75
15
A
ASN
12
-155.12
-147.67
15
A
HIS
44
76.18
128.48
15
A
SER
46
8.38
-81.04
15
A
SER
48
63.28
175.97
15
A
ALA
51
-148.68
-142.78
15
A
ARG
52
-165.46
-46.53
15
A
SER
53
-174.01
-68.38
15
A
LEU
54
64.19
-175.98
16
A
THR
3
-158.69
-46.92
16
A
ILE
4
159.07
-37.03
16
A
ASN
12
-156.28
-137.16
16
A
THR
25
-109.63
-79.98
16
A
HIS
44
69.43
130.98
16
A
TYR
45
-156.77
-139.10
16
A
ALA
51
-159.52
-141.19
16
A
ARG
52
-123.14
-63.69
16
A
SER
53
-169.97
-63.14
17
A
ALA
2
-161.71
-73.34
17
A
THR
3
65.64
131.94
17
A
ILE
4
74.58
-35.32
17
A
ASN
12
70.74
-84.90
17
A
VAL
13
29.44
-125.20
17
A
SER
14
-175.25
84.52
17
A
THR
15
50.70
-2.50
17
A
ALA
29
-79.18
40.93
17
A
GLU
30
63.95
-74.58
17
A
TYR
45
-71.67
29.54
17
A
SER
46
42.75
79.00
17
A
ALA
49
58.41
-91.26
17
A
ALA
51
-161.39
-47.74
17
A
LYS
55
56.34
-111.69
18
A
THR
3
-148.60
-56.51
18
A
ASN
12
-171.25
139.78
18
A
VAL
13
23.32
-87.30
18
A
ALA
29
59.44
13.40
18
A
GLU
30
71.17
-55.93
18
A
HIS
44
73.78
121.98
18
A
SER
46
-154.80
69.23
18
A
ARG
52
-160.04
78.74
18
A
SER
53
55.86
-96.84
18
A
LYS
55
75.42
-60.55
19
A
ALA
2
62.21
178.09
19
A
THR
3
78.58
-29.04
19
A
ASN
12
-177.58
-88.24
19
A
VAL
13
-69.23
-86.38
19
A
SER
14
-158.48
-157.94
19
A
ASN
23
-167.60
31.53
19
A
LYS
24
-158.74
40.11
19
A
ARG
26
57.36
-158.94
19
A
TYR
45
52.10
82.78
19
A
SER
53
-148.41
36.86
20
A
ALA
2
-162.77
-88.26
20
A
THR
3
77.78
178.95
20
A
ASN
12
-170.91
126.34
20
A
VAL
13
51.68
-91.31
20
A
THR
25
-96.25
-80.18
20
A
ALA
39
-131.14
-46.63
20
A
GLU
42
-138.77
-55.75
20
A
HIS
44
78.39
149.95
20
A
LEU
54
50.54
-125.57
refinement
AMBER
PURINE REPRESSOR
PURINE REPRESSOR DNA-BINDING DOMAIN DNA BINDING
1
Y
N
A
ILE
4
A
ILE
4
HELX_P
A
ALA
11
A
ALA
11
1
H1
8
A
THR
15
A
THR
15
HELX_P
A
ASN
23
A
ASN
23
1
H2
9
A
GLU
30
A
GLU
30
HELX_P
A
GLU
42
A
GLU
42
1
H3
13
DNA BINDING PROTEIN
PURINE REPRESSOR, DNA-BINDING PROTEIN
PURR_ECOLI
UNP
1
1
P0ACP7
ATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAV
EKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDN
AFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPT
AVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEV
HPRLIERRSVADGPFRDYRR
1
55
1PRV
2
56
P0ACP7
A
1
2
56
1
P 1