0.019135 0.000000 0.000000 0.000000 0.013096 0.000000 0.000000 0.000000 0.011666 0.00000 0.00000 0.00000 Sivaraman, J. Iannuzzi, P. Cygler, M. Matte, A. Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 52.261 76.362 85.717 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 335 87 101 10.1016/j.jmb.2003.10.003 14659742 Crystal structure of the RluD pseudouridine Synthase catalytic module, an enzyme that modifies 23S rRNA and is essential for normal cell growth of Escherichia coli 2003 100 1 IMAGE PLATE 2003-02-24 RIGAKU RAXIS HTC GRAPHITE MAD M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU MICROMAX-007 29229.068 Ribosomal large subunit pseudouridine synthase D 4.2.1.70 catalytic domain 1 man polymer 18.015 water 294 nat water Pseudouridylate synthase; Uracil hydrolyase; suppressor of ftsH mutation E.C.4.2.1.70 no yes ARFEPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGL(MSE)VVAK TVPAQTRLVESLQRREITREYEAVAIGH(MSE)TAGGTVDEPISRHPTKRTH(MSE)AVHP(MSE)GKPAVTHYRI (MSE)EHFRVHTRLRLRLETGRTHQIRVH(MSE)AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHAT (MSE)LRLYHPISGIE(MSE)EWHAPIPQD(MSE)VELIEV(MSE)RADFEEHKDEVDWL ARFEPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPA QTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTH QIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRA DFEEHKDEVDWL A RLUD_ECO57 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia sample RLUD or SFHB 562 Escherichia coli 562 Escherichia coli DL41 plasmid 1 2.64 53.0 microbatch under oil 7. PEG 8000, KCL, Glycerol, pH 7., microbatch under oil, temperature 293K 293 Montreal-Kingston Bacterial Structural Genomics Initiative BSGI software repository Initial release Version format compliance Version format compliance Refinement description 1 0 2003-11-04 1 1 2008-04-29 1 2 2011-07-13 1 3 2017-10-11 Y RCSB Y RCSB 2003-06-20 REL REL HOH water HOH 327 2 HOH HOH 327 A HOH 328 2 HOH HOH 328 A HOH 329 2 HOH HOH 329 A HOH 330 2 HOH HOH 330 A HOH 331 2 HOH HOH 331 A HOH 332 2 HOH HOH 332 A HOH 333 2 HOH HOH 333 A HOH 334 2 HOH HOH 334 A HOH 335 2 HOH HOH 335 A HOH 336 2 HOH HOH 336 A HOH 337 2 HOH HOH 337 A HOH 338 2 HOH HOH 338 A HOH 339 2 HOH HOH 339 A HOH 340 2 HOH HOH 340 A HOH 341 2 HOH HOH 341 A HOH 342 2 HOH HOH 342 A HOH 343 2 HOH HOH 343 A HOH 344 2 HOH HOH 344 A HOH 345 2 HOH HOH 345 A HOH 346 2 HOH HOH 346 A HOH 347 2 HOH HOH 347 A HOH 348 2 HOH HOH 348 A HOH 349 2 HOH HOH 349 A HOH 350 2 HOH HOH 350 A HOH 351 2 HOH HOH 351 A HOH 352 2 HOH HOH 352 A HOH 353 2 HOH HOH 353 A HOH 354 2 HOH HOH 354 A HOH 355 2 HOH HOH 355 A HOH 356 2 HOH HOH 356 A HOH 357 2 HOH HOH 357 A HOH 358 2 HOH HOH 358 A HOH 359 2 HOH HOH 359 A HOH 360 2 HOH HOH 360 A HOH 361 2 HOH HOH 361 A HOH 362 2 HOH HOH 362 A HOH 363 2 HOH HOH 363 A HOH 364 2 HOH HOH 364 A HOH 365 2 HOH HOH 365 A HOH 366 2 HOH HOH 366 A HOH 367 2 HOH HOH 367 A HOH 368 2 HOH HOH 368 A HOH 369 2 HOH HOH 369 A HOH 370 2 HOH HOH 370 A HOH 371 2 HOH HOH 371 A HOH 372 2 HOH HOH 372 A HOH 373 2 HOH HOH 373 A HOH 374 2 HOH HOH 374 A HOH 375 2 HOH HOH 375 A HOH 376 2 HOH HOH 376 A HOH 377 2 HOH HOH 377 A HOH 378 2 HOH HOH 378 A HOH 379 2 HOH HOH 379 A HOH 380 2 HOH HOH 380 A HOH 381 2 HOH HOH 381 A HOH 382 2 HOH HOH 382 A HOH 383 2 HOH HOH 383 A HOH 384 2 HOH HOH 384 A HOH 385 2 HOH HOH 385 A HOH 386 2 HOH HOH 386 A HOH 387 2 HOH HOH 387 A HOH 388 2 HOH HOH 388 A HOH 389 2 HOH HOH 389 A HOH 390 2 HOH HOH 390 A HOH 391 2 HOH HOH 391 A HOH 392 2 HOH HOH 392 A HOH 393 2 HOH HOH 393 A HOH 394 2 HOH HOH 394 A HOH 395 2 HOH HOH 395 A HOH 396 2 HOH HOH 396 A HOH 397 2 HOH HOH 397 A HOH 398 2 HOH HOH 398 A HOH 399 2 HOH HOH 399 A HOH 400 2 HOH HOH 400 A HOH 401 2 HOH HOH 401 A HOH 402 2 HOH HOH 402 A HOH 403 2 HOH HOH 403 A HOH 404 2 HOH HOH 404 A HOH 405 2 HOH HOH 405 A HOH 406 2 HOH HOH 406 A HOH 407 2 HOH HOH 407 A HOH 408 2 HOH HOH 408 A HOH 409 2 HOH HOH 409 A HOH 410 2 HOH HOH 410 A HOH 411 2 HOH HOH 411 A HOH 412 2 HOH HOH 412 A HOH 413 2 HOH HOH 413 A HOH 414 2 HOH HOH 414 A HOH 415 2 HOH HOH 415 A HOH 416 2 HOH HOH 416 A HOH 417 2 HOH HOH 417 A HOH 418 2 HOH HOH 418 A HOH 419 2 HOH HOH 419 A HOH 420 2 HOH HOH 420 A HOH 421 2 HOH HOH 421 A HOH 422 2 HOH HOH 422 A HOH 423 2 HOH HOH 423 A HOH 424 2 HOH HOH 424 A HOH 425 2 HOH HOH 425 A HOH 426 2 HOH HOH 426 A HOH 427 2 HOH HOH 427 A HOH 428 2 HOH HOH 428 A HOH 429 2 HOH HOH 429 A HOH 430 2 HOH HOH 430 A HOH 431 2 HOH HOH 431 A HOH 432 2 HOH HOH 432 A HOH 433 2 HOH HOH 433 A HOH 434 2 HOH HOH 434 A HOH 435 2 HOH HOH 435 A HOH 436 2 HOH HOH 436 A HOH 437 2 HOH HOH 437 A HOH 438 2 HOH HOH 438 A HOH 439 2 HOH HOH 439 A HOH 440 2 HOH HOH 440 A HOH 441 2 HOH HOH 441 A HOH 442 2 HOH HOH 442 A HOH 443 2 HOH HOH 443 A HOH 444 2 HOH HOH 444 A HOH 445 2 HOH HOH 445 A HOH 446 2 HOH HOH 446 A HOH 447 2 HOH HOH 447 A HOH 448 2 HOH HOH 448 A HOH 449 2 HOH HOH 449 A HOH 450 2 HOH HOH 450 A HOH 451 2 HOH HOH 451 A HOH 452 2 HOH HOH 452 A HOH 453 2 HOH HOH 453 A HOH 454 2 HOH HOH 454 A HOH 455 2 HOH HOH 455 A HOH 456 2 HOH HOH 456 A HOH 457 2 HOH HOH 457 A HOH 458 2 HOH HOH 458 A HOH 459 2 HOH HOH 459 A HOH 460 2 HOH HOH 460 A HOH 461 2 HOH HOH 461 A HOH 462 2 HOH HOH 462 A HOH 463 2 HOH HOH 463 A HOH 464 2 HOH HOH 464 A HOH 465 2 HOH HOH 465 A HOH 466 2 HOH HOH 466 A HOH 467 2 HOH HOH 467 A HOH 468 2 HOH HOH 468 A HOH 469 2 HOH HOH 469 A HOH 470 2 HOH HOH 470 A HOH 471 2 HOH HOH 471 A HOH 472 2 HOH HOH 472 A HOH 473 2 HOH HOH 473 A HOH 474 2 HOH HOH 474 A HOH 475 2 HOH HOH 475 A HOH 476 2 HOH HOH 476 A HOH 477 2 HOH HOH 477 A HOH 478 2 HOH HOH 478 A HOH 479 2 HOH HOH 479 A HOH 480 2 HOH HOH 480 A HOH 481 2 HOH HOH 481 A HOH 482 2 HOH HOH 482 A HOH 483 2 HOH HOH 483 A HOH 484 2 HOH HOH 484 A HOH 485 2 HOH HOH 485 A HOH 486 2 HOH HOH 486 A HOH 487 2 HOH HOH 487 A HOH 488 2 HOH HOH 488 A HOH 489 2 HOH HOH 489 A HOH 490 2 HOH HOH 490 A HOH 491 2 HOH HOH 491 A HOH 492 2 HOH HOH 492 A HOH 493 2 HOH HOH 493 A HOH 494 2 HOH HOH 494 A HOH 495 2 HOH HOH 495 A HOH 496 2 HOH HOH 496 A HOH 497 2 HOH HOH 497 A HOH 498 2 HOH HOH 498 A HOH 499 2 HOH HOH 499 A HOH 500 2 HOH HOH 500 A HOH 501 2 HOH HOH 501 A HOH 502 2 HOH HOH 502 A HOH 503 2 HOH HOH 503 A HOH 504 2 HOH HOH 504 A HOH 505 2 HOH HOH 505 A HOH 506 2 HOH HOH 506 A HOH 507 2 HOH HOH 507 A HOH 508 2 HOH HOH 508 A HOH 509 2 HOH HOH 509 A HOH 510 2 HOH HOH 510 A HOH 511 2 HOH HOH 511 A HOH 512 2 HOH HOH 512 A HOH 513 2 HOH HOH 513 A HOH 514 2 HOH HOH 514 A HOH 515 2 HOH HOH 515 A HOH 516 2 HOH HOH 516 A HOH 517 2 HOH HOH 517 A HOH 518 2 HOH HOH 518 A HOH 519 2 HOH HOH 519 A HOH 520 2 HOH HOH 520 A HOH 521 2 HOH HOH 521 A HOH 522 2 HOH HOH 522 A HOH 523 2 HOH HOH 523 A HOH 524 2 HOH HOH 524 A HOH 525 2 HOH HOH 525 A HOH 526 2 HOH HOH 526 A HOH 527 2 HOH HOH 527 A HOH 528 2 HOH HOH 528 A HOH 529 2 HOH HOH 529 A HOH 530 2 HOH HOH 530 A HOH 531 2 HOH HOH 531 A HOH 532 2 HOH HOH 532 A HOH 533 2 HOH HOH 533 A HOH 534 2 HOH HOH 534 A HOH 535 2 HOH HOH 535 A HOH 536 2 HOH HOH 536 A HOH 537 2 HOH HOH 537 A HOH 538 2 HOH HOH 538 A HOH 539 2 HOH HOH 539 A HOH 540 2 HOH HOH 540 A HOH 541 2 HOH HOH 541 A HOH 542 2 HOH HOH 542 A HOH 543 2 HOH HOH 543 A HOH 544 2 HOH HOH 544 A HOH 545 2 HOH HOH 545 A HOH 546 2 HOH HOH 546 A HOH 547 2 HOH HOH 547 A HOH 548 2 HOH HOH 548 A HOH 549 2 HOH HOH 549 A HOH 550 2 HOH HOH 550 A HOH 551 2 HOH HOH 551 A HOH 552 2 HOH HOH 552 A HOH 553 2 HOH HOH 553 A HOH 554 2 HOH HOH 554 A HOH 555 2 HOH HOH 555 A HOH 556 2 HOH HOH 556 A HOH 557 2 HOH HOH 557 A HOH 558 2 HOH HOH 558 A HOH 559 2 HOH HOH 559 A HOH 560 2 HOH HOH 560 A HOH 561 2 HOH HOH 561 A HOH 562 2 HOH HOH 562 A HOH 563 2 HOH HOH 563 A HOH 564 2 HOH HOH 564 A HOH 565 2 HOH HOH 565 A HOH 566 2 HOH HOH 566 A HOH 567 2 HOH HOH 567 A HOH 568 2 HOH HOH 568 A HOH 569 2 HOH HOH 569 A HOH 570 2 HOH HOH 570 A HOH 571 2 HOH HOH 571 A HOH 572 2 HOH HOH 572 A HOH 573 2 HOH HOH 573 A HOH 574 2 HOH HOH 574 A HOH 575 2 HOH HOH 575 A HOH 576 2 HOH HOH 576 A HOH 577 2 HOH HOH 577 A HOH 578 2 HOH HOH 578 A HOH 579 2 HOH HOH 579 A HOH 580 2 HOH HOH 580 A HOH 581 2 HOH HOH 581 A HOH 582 2 HOH HOH 582 A HOH 583 2 HOH HOH 583 A HOH 584 2 HOH HOH 584 A HOH 585 2 HOH HOH 585 A HOH 586 2 HOH HOH 586 A HOH 587 2 HOH HOH 587 A HOH 588 2 HOH HOH 588 A HOH 589 2 HOH HOH 589 A HOH 590 2 HOH HOH 590 A HOH 591 2 HOH HOH 591 A HOH 592 2 HOH HOH 592 A HOH 593 2 HOH HOH 593 A HOH 594 2 HOH HOH 594 A HOH 595 2 HOH HOH 595 A HOH 596 2 HOH HOH 596 A HOH 597 2 HOH HOH 597 A HOH 598 2 HOH HOH 598 A HOH 599 2 HOH HOH 599 A HOH 600 2 HOH HOH 600 A HOH 601 2 HOH HOH 601 A HOH 602 2 HOH HOH 602 A HOH 603 2 HOH HOH 603 A HOH 604 2 HOH HOH 604 A HOH 605 2 HOH HOH 605 A HOH 606 2 HOH HOH 606 A HOH 607 2 HOH HOH 607 A HOH 608 2 HOH HOH 608 A HOH 609 2 HOH HOH 609 A HOH 610 2 HOH HOH 610 A HOH 611 2 HOH HOH 611 A HOH 612 2 HOH HOH 612 A HOH 613 2 HOH HOH 613 A HOH 614 2 HOH HOH 614 A HOH 615 2 HOH HOH 615 A HOH 616 2 HOH HOH 616 A HOH 617 2 HOH HOH 617 A HOH 618 2 HOH HOH 618 A HOH 619 2 HOH HOH 619 A HOH 620 2 HOH HOH 620 A ALA 75 n 1 ALA 75 A ARG 76 n 2 ARG 76 A PHE 77 n 3 PHE 77 A GLU 78 n 4 GLU 78 A PRO 79 n 5 PRO 79 A GLN 80 n 6 GLN 80 A ASP 81 n 7 ASP 81 A ILE 82 n 8 ILE 82 A PRO 83 n 9 PRO 83 A LEU 84 n 10 LEU 84 A ASP 85 n 11 ASP 85 A ILE 86 n 12 ILE 86 A VAL 87 n 13 VAL 87 A TYR 88 n 14 TYR 88 A GLU 89 n 15 GLU 89 A ASP 90 n 16 ASP 90 A GLU 91 n 17 GLU 91 A ASP 92 n 18 ASP 92 A ILE 93 n 19 ILE 93 A ILE 94 n 20 ILE 94 A VAL 95 n 21 VAL 95 A ILE 96 n 22 ILE 96 A ASN 97 n 23 ASN 97 A LYS 98 n 24 LYS 98 A PRO 99 n 25 PRO 99 A ARG 100 n 26 ARG 100 A ASP 101 n 27 ASP 101 A LEU 102 n 28 LEU 102 A VAL 103 n 29 VAL 103 A VAL 104 n 30 VAL 104 A HIS 105 n 31 HIS 105 A PRO 106 n 32 PRO 106 A GLY 107 n 33 GLY 107 A ALA 108 n 34 ALA 108 A GLY 109 n 35 GLY 109 A ASN 110 n 36 ASN 110 A PRO 111 n 37 PRO 111 A ASP 112 n 38 ASP 112 A GLY 113 n 39 GLY 113 A THR 114 n 40 THR 114 A VAL 115 n 41 VAL 115 A LEU 116 n 42 LEU 116 A ASN 117 n 43 ASN 117 A ALA 118 n 44 ALA 118 A LEU 119 n 45 LEU 119 A LEU 120 n 46 LEU 120 A HIS 121 n 47 HIS 121 A TYR 122 n 48 TYR 122 A TYR 123 n 49 TYR 123 A PRO 124 n 50 PRO 124 A PRO 125 n 51 PRO 125 A ILE 126 n 52 ILE 126 A ALA 127 n 53 ALA 127 A ASP 128 n 54 ASP 128 A VAL 129 n 55 VAL 129 A PRO 130 n 56 PRO 130 A ARG 131 n 57 ARG 131 A ALA 132 n 58 ALA 132 A GLY 133 n 59 GLY 133 A ILE 134 n 60 ILE 134 A VAL 135 n 61 VAL 135 A HIS 136 n 62 HIS 136 A ARG 137 n 63 ARG 137 A LEU 138 n 64 LEU 138 A ASP 139 n 65 ASP 139 A LYS 140 n 66 LYS 140 A ASP 141 n 67 ASP 141 A THR 142 n 68 THR 142 A THR 143 n 69 THR 143 A GLY 144 n 70 GLY 144 A LEU 145 n 71 LEU 145 A MSE 146 n 72 MSE 146 A VAL 147 n 73 VAL 147 A VAL 148 n 74 VAL 148 A ALA 149 n 75 ALA 149 A LYS 150 n 76 LYS 150 A THR 151 n 77 THR 151 A VAL 152 n 78 VAL 152 A PRO 153 n 79 PRO 153 A ALA 154 n 80 ALA 154 A GLN 155 n 81 GLN 155 A THR 156 n 82 THR 156 A ARG 157 n 83 ARG 157 A LEU 158 n 84 LEU 158 A VAL 159 n 85 VAL 159 A GLU 160 n 86 GLU 160 A SER 161 n 87 SER 161 A LEU 162 n 88 LEU 162 A GLN 163 n 89 GLN 163 A ARG 164 n 90 ARG 164 A ARG 165 n 91 ARG 165 A GLU 166 n 92 GLU 166 A ILE 167 n 93 ILE 167 A THR 168 n 94 THR 168 A ARG 169 n 95 ARG 169 A GLU 170 n 96 GLU 170 A TYR 171 n 97 TYR 171 A GLU 172 n 98 GLU 172 A ALA 173 n 99 ALA 173 A VAL 174 n 100 VAL 174 A ALA 175 n 101 ALA 175 A ILE 176 n 102 ILE 176 A GLY 177 n 103 GLY 177 A HIS 178 n 104 HIS 178 A MSE 179 n 105 MSE 179 A THR 180 n 106 THR 180 A ALA 181 n 107 ALA 181 A GLY 182 n 108 GLY 182 A GLY 183 n 109 GLY 183 A THR 184 n 110 THR 184 A VAL 185 n 111 VAL 185 A ASP 186 n 112 ASP 186 A GLU 187 n 113 GLU 187 A PRO 188 n 114 PRO 188 A ILE 189 n 115 ILE 189 A SER 190 n 116 SER 190 A ARG 191 n 117 ARG 191 A HIS 192 n 118 HIS 192 A PRO 193 n 119 PRO 193 A THR 194 n 120 THR 194 A LYS 195 n 121 LYS 195 A ARG 196 n 122 ARG 196 A THR 197 n 123 THR 197 A HIS 198 n 124 HIS 198 A MSE 199 n 125 MSE 199 A ALA 200 n 126 ALA 200 A VAL 201 n 127 VAL 201 A HIS 202 n 128 HIS 202 A PRO 203 n 129 PRO 203 A MSE 204 n 130 MSE 204 A GLY 205 n 131 GLY 205 A LYS 206 n 132 LYS 206 A PRO 207 n 133 PRO 207 A ALA 208 n 134 ALA 208 A VAL 209 n 135 VAL 209 A THR 210 n 136 THR 210 A HIS 211 n 137 HIS 211 A TYR 212 n 138 TYR 212 A ARG 213 n 139 ARG 213 A ILE 214 n 140 ILE 214 A MSE 215 n 141 MSE 215 A GLU 216 n 142 GLU 216 A HIS 217 n 143 HIS 217 A PHE 218 n 144 PHE 218 A ARG 219 n 145 ARG 219 A VAL 220 n 146 VAL 220 A HIS 221 n 147 HIS 221 A THR 222 n 148 THR 222 A ARG 223 n 149 ARG 223 A LEU 224 n 150 LEU 224 A ARG 225 n 151 ARG 225 A LEU 226 n 152 LEU 226 A ARG 227 n 153 ARG 227 A LEU 228 n 154 LEU 228 A GLU 229 n 155 GLU 229 A THR 230 n 156 THR 230 A GLY 231 n 157 GLY 231 A ARG 232 n 158 ARG 232 A THR 233 n 159 THR 233 A HIS 234 n 160 HIS 234 A GLN 235 n 161 GLN 235 A ILE 236 n 162 ILE 236 A ARG 237 n 163 ARG 237 A VAL 238 n 164 VAL 238 A HIS 239 n 165 HIS 239 A MSE 240 n 166 MSE 240 A ALA 241 n 167 ALA 241 A HIS 242 n 168 HIS 242 A ILE 243 n 169 ILE 243 A THR 244 n 170 THR 244 A HIS 245 n 171 HIS 245 A PRO 246 n 172 PRO 246 A LEU 247 n 173 LEU 247 A VAL 248 n 174 VAL 248 A GLY 249 n 175 GLY 249 A ASP 250 n 176 ASP 250 A PRO 251 n 177 PRO 251 A VAL 252 n 178 VAL 252 A TYR 253 n 179 TYR 253 A GLY 254 n 180 GLY 254 A GLY 255 n 181 GLY 255 A ARG 256 n 182 ARG 256 A PRO 257 n 183 PRO 257 A ARG 258 n 184 ARG 258 A PRO 259 n 185 PRO 259 A PRO 260 n 186 PRO 260 A LYS 261 n 187 LYS 261 A GLY 262 n 188 GLY 262 A ALA 263 n 189 ALA 263 A SER 264 n 190 SER 264 A GLU 265 n 191 GLU 265 A ALA 266 n 192 ALA 266 A PHE 267 n 193 PHE 267 A ILE 268 n 194 ILE 268 A SER 269 n 195 SER 269 A THR 270 n 196 THR 270 A LEU 271 n 197 LEU 271 A ARG 272 n 198 ARG 272 A LYS 273 n 199 LYS 273 A PHE 274 n 200 PHE 274 A ASP 275 n 201 ASP 275 A ARG 276 n 202 ARG 276 A GLN 277 n 203 GLN 277 A ALA 278 n 204 ALA 278 A LEU 279 n 205 LEU 279 A HIS 280 n 206 HIS 280 A ALA 281 n 207 ALA 281 A THR 282 n 208 THR 282 A MSE 283 n 209 MSE 283 A LEU 284 n 210 LEU 284 A ARG 285 n 211 ARG 285 A LEU 286 n 212 LEU 286 A TYR 287 n 213 TYR 287 A HIS 288 n 214 HIS 288 A PRO 289 n 215 PRO 289 A ILE 290 n 216 ILE 290 A SER 291 n 217 SER 291 A GLY 292 n 218 GLY 292 A ILE 293 n 219 ILE 293 A GLU 294 n 220 GLU 294 A MSE 295 n 221 MSE 295 A GLU 296 n 222 GLU 296 A TRP 297 n 223 TRP 297 A HIS 298 n 224 HIS 298 A ALA 299 n 225 ALA 299 A PRO 300 n 226 PRO 300 A ILE 301 n 227 ILE 301 A PRO 302 n 228 PRO 302 A GLN 303 n 229 GLN 303 A ASP 304 n 230 ASP 304 A MSE 305 n 231 MSE 305 A VAL 306 n 232 VAL 306 A GLU 307 n 233 GLU 307 A LEU 308 n 234 LEU 308 A ILE 309 n 235 ILE 309 A GLU 310 n 236 GLU 310 A VAL 311 n 237 VAL 311 A MSE 312 n 238 MSE 312 A ARG 313 n 239 ARG 313 A ALA 314 n 240 ALA 314 A ASP 315 n 241 ASP 315 A PHE 316 n 242 PHE 316 A GLU 317 n 243 GLU 317 A GLU 318 n 244 GLU 318 A HIS 319 n 245 HIS 319 A LYS 320 n 246 LYS 320 A ASP 321 n 247 ASP 321 A GLU 322 n 248 GLU 322 A VAL 323 n 249 VAL 323 A ASP 324 n 250 ASP 324 A TRP 325 n 251 TRP 325 A LEU 326 n 252 LEU 326 A author_defined_assembly 1 monomeric A MSE 146 SELENOMETHIONINE A MSE 72 MET A MSE 179 SELENOMETHIONINE A MSE 105 MET A MSE 199 SELENOMETHIONINE A MSE 125 MET A MSE 204 SELENOMETHIONINE A MSE 130 MET A MSE 215 SELENOMETHIONINE A MSE 141 MET A MSE 240 SELENOMETHIONINE A MSE 166 MET A MSE 283 SELENOMETHIONINE A MSE 209 MET A MSE 295 SELENOMETHIONINE A MSE 221 MET A MSE 305 SELENOMETHIONINE A MSE 231 MET A MSE 312 SELENOMETHIONINE A MSE 238 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 88 A N TYR 14 A O VAL 95 A O VAL 21 A N ILE 94 A N ILE 20 A O VAL 148 A O VAL 74 A N THR 143 A N THR 69 A O ALA 281 A O ALA 207 A O MSE 283 A O MSE 209 A N GLU 170 A N GLU 96 A N ALA 173 A N ALA 99 A O LEU 224 A O LEU 150 A O ARG 223 A O ARG 149 A N GLU 216 A N GLU 142 A O TYR 212 A O TYR 138 A N GLY 183 A N GLY 109 A N TYR 88 A N TYR 14 A O VAL 95 A O VAL 21 A N ILE 94 A N ILE 20 A O VAL 148 A O VAL 74 A N THR 143 A N THR 69 A O ALA 281 A O ALA 207 A N LEU 286 A N LEU 212 A O MSE 295 A O MSE 221 A N SER 190 A N SER 116 A O ALA 200 A O ALA 126 1 -3.75 0.50 120.30 116.55 A A A NE CZ NH2 ARG ARG ARG 237 237 237 N 1 A ARG 76 -18.61 -80.96 1 A THR 244 87.54 7.94 0.243 0.218 1.80 50. 2406 32444 29910 8.0 RANDAM 1 0 0 MAD Engh & Huber 0.29 1.80 50. 294 2315 0 0 2021 0.01 1.8 1.80 50. 1PRZ 32444 32444 -3 0.065 1 12.4 99.4 1.80 1.86 98.3 data collection CRYSATL CLEAR data reduction HKL-2000 phasing SOLVE refinement CNS data reduction CrystalClear (MSC/RIGAKU) data scaling HKL-2000 Ribosomal large subunit pseudouridine synthase D (E.C.4.2.1.70) Crystal structure of pseudouridine synthase RluD catalytic module 1 N N 2 N N A THR 114 A THR 40 HELX_P A TYR 123 A TYR 49 1 1 10 A PRO 124 A PRO 50 HELX_P A ILE 134 A ILE 60 5 2 11 A THR 151 A THR 77 HELX_P A ARG 164 A ARG 90 1 3 14 A HIS 234 A HIS 160 HELX_P A ILE 243 A ILE 169 1 4 10 A SER 264 A SER 190 HELX_P A PHE 274 A PHE 200 1 5 11 A PRO 302 A PRO 228 HELX_P A HIS 319 A HIS 245 1 6 18 covale 1.331 A LEU 145 A C LEU 71 1_555 A MSE 146 A N MSE 72 1_555 covale 1.328 A MSE 146 A C MSE 72 1_555 A VAL 147 A N VAL 73 1_555 covale 1.322 A HIS 178 A C HIS 104 1_555 A MSE 179 A N MSE 105 1_555 covale 1.321 A MSE 179 A C MSE 105 1_555 A THR 180 A N THR 106 1_555 covale 1.331 A HIS 198 A C HIS 124 1_555 A MSE 199 A N MSE 125 1_555 covale 1.325 A MSE 199 A C MSE 125 1_555 A ALA 200 A N ALA 126 1_555 covale 1.328 A PRO 203 A C PRO 129 1_555 A MSE 204 A N MSE 130 1_555 covale 1.331 A MSE 204 A C MSE 130 1_555 A GLY 205 A N GLY 131 1_555 covale 1.327 A ILE 214 A C ILE 140 1_555 A MSE 215 A N MSE 141 1_555 covale 1.323 A MSE 215 A C MSE 141 1_555 A GLU 216 A N GLU 142 1_555 covale 1.339 A HIS 239 A C HIS 165 1_555 A MSE 240 A N MSE 166 1_555 covale 1.325 A MSE 240 A C MSE 166 1_555 A ALA 241 A N ALA 167 1_555 covale 1.326 A THR 282 A C THR 208 1_555 A MSE 283 A N MSE 209 1_555 covale 1.326 A MSE 283 A C MSE 209 1_555 A LEU 284 A N LEU 210 1_555 covale 1.326 A GLU 294 A C GLU 220 1_555 A MSE 295 A N MSE 221 1_555 covale 1.322 A MSE 295 A C MSE 221 1_555 A GLU 296 A N GLU 222 1_555 covale 1.332 A ASP 304 A C ASP 230 1_555 A MSE 305 A N MSE 231 1_555 covale 1.326 A MSE 305 A C MSE 231 1_555 A VAL 306 A N VAL 232 1_555 covale 1.336 A VAL 311 A C VAL 237 1_555 A MSE 312 A N MSE 238 1_555 covale 1.325 A MSE 312 A C MSE 238 1_555 A ARG 313 A N ARG 239 1_555 LYASE Pseudouridine synthase, RluD, Montreal-Kingston Bacterial Structural Genomics Initiative, BSGI, Structural Genomics, LYASE RLUD_ECO57 UNP 1 75 Q8X9F0 ARFEPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPA QTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTH QIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRA DFEEHKDEVDWL 75 326 1PRZ 75 326 Q8X9F0 A 1 1 252 1 MET MODIFIED RESIDUE MSE 146 1PRZ A Q8X9F0 UNP 146 72 1 MET MODIFIED RESIDUE MSE 179 1PRZ A Q8X9F0 UNP 179 105 1 MET MODIFIED RESIDUE MSE 199 1PRZ A Q8X9F0 UNP 199 125 1 MET MODIFIED RESIDUE MSE 204 1PRZ A Q8X9F0 UNP 204 130 1 MET MODIFIED RESIDUE MSE 215 1PRZ A Q8X9F0 UNP 215 141 1 MET MODIFIED RESIDUE MSE 240 1PRZ A Q8X9F0 UNP 240 166 1 MET MODIFIED RESIDUE MSE 283 1PRZ A Q8X9F0 UNP 283 209 1 MET MODIFIED RESIDUE MSE 295 1PRZ A Q8X9F0 UNP 295 221 1 MET MODIFIED RESIDUE MSE 305 1PRZ A Q8X9F0 UNP 305 231 1 MET MODIFIED RESIDUE MSE 312 1PRZ A Q8X9F0 UNP 312 238 8 5 2 anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A ILE 86 A ILE 12 A GLU 89 A GLU 15 A ILE 93 A ILE 19 A LYS 98 A LYS 24 A THR 143 A THR 69 A ALA 149 A ALA 75 A LEU 279 A LEU 205 A TYR 287 A TYR 213 A THR 168 A THR 94 A ILE 176 A ILE 102 A HIS 221 A HIS 147 A LEU 228 A LEU 154 A VAL 209 A VAL 135 A HIS 217 A HIS 143 A GLY 183 A GLY 109 A ASP 186 A ASP 112 A ILE 86 A ILE 12 A GLU 89 A GLU 15 A ILE 93 A ILE 19 A LYS 98 A LYS 24 A THR 143 A THR 69 A ALA 149 A ALA 75 A LEU 279 A LEU 205 A TYR 287 A TYR 213 A GLU 294 A GLU 220 A HIS 298 A HIS 224 A ILE 189 A ILE 115 A ARG 191 A ARG 117 A MSE 199 A MSE 125 A VAL 201 A VAL 127 19 orthorhombic P 21 21 21