0.006821 0.000000 0.002008 0.000000 0.022523 0.000000 0.000000 0.000000 0.012788 0.00000 0.00000 0.00000 Eichman, B.F. O'Rourke, E.J. Radicella, J.P. Ellenberger, T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 106.40 90.00 146.605 44.399 81.516 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C2 H6 O S 78.133 BETA-MERCAPTOETHANOL non-polymer Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C7 H14 N2 O4 190.197 n LYSINE NZ-CARBOXYLIC ACID L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C6 H14 O2 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Embo J. EMJODG 0897 0261-4189 22 4898 4909 10.1093/emboj/cdg505 14517230 Crystal structures of 3-methyladenine DNA glycosylase MagIII and the recognition of alkylated bases 2003 US J.Biol.Chem. JBCHA3 0071 0021-9258 275 20077 20083 10.1074/jbc.M001071200 A NOVEL 3-METHYLADENINE DNA GLYCOSYLASE FROM HELICOBACTER PYLORI DEFINES A NEW CLASS WITHIN THE ENDONUCLEASE III FAMILY OF BASE EXCISION REPAIR GLYCOSYLASES 2000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 110 1 110 1 CCD 2002-01-11 ADSC QUANTUM 210 CCD 2002-07-19 CUSTOM-MADE MAD M x-ray 1 M x-ray 1 0.9450 1.0 1.0000 1.0 0.9686 1.0 1.0083 1.0 A1 CHESS 0.9450 SYNCHROTRON CHESS BEAMLINE A1 X12C NSLS 1.0000, 0.9686, 1.0083 SYNCHROTRON NSLS BEAMLINE X12C 25218.064 3-METHYLADENINE DNA GLYCOSYLASE 2 man polymer 35.453 CHLORIDE ION 1 syn non-polymer 78.133 BETA-MERCAPTOETHANOL 1 syn non-polymer 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL 2 syn non-polymer 18.015 water 234 nat water no yes VLDSFEILKALKSLDLLKNAPAWWWPNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKL AECVRPSGFYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKL GIEIEDYDELQHFFEKGVQENLNSALALYENTISLAQLYARFHG(KCX)IVEFSKQKLELKL VLDSFEILKALKSLDLLKNAPAWWWPNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKL AECVRPSGFYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKL GIEIEDYDELQHFFEKGVQENLNSALALYENTISLAQLYARFHGKIVEFSKQKLELKL A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Helicobacter 13-5 Escherichia sample 210 Helicobacter pylori 562 Escherichia coli PGEX-6P-1 plasmid 2 2.52 51.24 VAPOR DIFFUSION, HANGING DROP 7.0 PEG 4000, HEPES, MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 repository Initial release Version format compliance Version format compliance 1 0 2003-10-07 1 1 2008-04-29 1 2 2011-07-13 3,9-dimethyladenine bound to MagIII 1,N6-ethenoadenine bound to MagIII SEQUENCE THE DIFFERENCES BETWEEN THE SEQUENCES IN THE PDB ENTRY 1PU6 AND IN THE DATABASE REFERENCE ARE DUE TO THE PARTICULAR H.PYLORI STRAIN. DATABASE REFERENCE REFERS TO H.PYLORI STRAIN J99; MAGIII WAS CLONED FROM H.PYLORI STRAIN 13/5 (SEE REFERENCE 1) RCSB Y RCSB 2003-06-24 REL REL CL CHLORIDE ION BME BETA-MERCAPTOETHANOL MPD (4S)-2-METHYL-2,4-PENTANEDIOL HOH water CL 301 2 CL CL 301 A SEO 302 3 BME BME 302 A MPD 303 4 MPD MPD 303 B MPD 304 4 MPD MPD 304 B HOH 305 5 HOH HOH 305 A HOH 307 5 HOH HOH 307 A HOH 308 5 HOH HOH 308 A HOH 309 5 HOH HOH 309 A HOH 311 5 HOH HOH 311 A HOH 313 5 HOH HOH 313 A HOH 314 5 HOH HOH 314 A HOH 316 5 HOH HOH 316 A HOH 317 5 HOH HOH 317 A HOH 319 5 HOH HOH 319 A HOH 320 5 HOH HOH 320 A HOH 324 5 HOH HOH 324 A HOH 325 5 HOH HOH 325 A HOH 326 5 HOH HOH 326 A HOH 327 5 HOH HOH 327 A HOH 330 5 HOH HOH 330 A HOH 333 5 HOH HOH 333 A HOH 334 5 HOH HOH 334 A HOH 335 5 HOH HOH 335 A HOH 336 5 HOH HOH 336 A HOH 338 5 HOH HOH 338 A HOH 340 5 HOH HOH 340 A HOH 342 5 HOH HOH 342 A HOH 344 5 HOH HOH 344 A HOH 346 5 HOH HOH 346 A HOH 347 5 HOH HOH 347 A HOH 348 5 HOH HOH 348 A HOH 351 5 HOH HOH 351 A HOH 352 5 HOH HOH 352 A HOH 356 5 HOH HOH 356 A HOH 357 5 HOH HOH 357 A HOH 358 5 HOH HOH 358 A HOH 363 5 HOH HOH 363 A HOH 364 5 HOH HOH 364 A HOH 365 5 HOH HOH 365 A HOH 367 5 HOH HOH 367 A HOH 368 5 HOH HOH 368 A HOH 369 5 HOH HOH 369 A HOH 370 5 HOH HOH 370 A HOH 371 5 HOH HOH 371 A HOH 372 5 HOH HOH 372 A HOH 373 5 HOH HOH 373 A HOH 374 5 HOH HOH 374 A HOH 379 5 HOH HOH 379 A HOH 380 5 HOH HOH 380 A HOH 381 5 HOH HOH 381 A HOH 382 5 HOH HOH 382 A HOH 383 5 HOH HOH 383 A HOH 384 5 HOH HOH 384 A HOH 385 5 HOH HOH 385 A HOH 386 5 HOH HOH 386 A HOH 387 5 HOH HOH 387 A HOH 388 5 HOH HOH 388 A HOH 389 5 HOH HOH 389 A HOH 411 5 HOH HOH 411 A HOH 416 5 HOH HOH 416 A HOH 417 5 HOH HOH 417 A HOH 418 5 HOH HOH 418 A HOH 419 5 HOH HOH 419 A HOH 420 5 HOH HOH 420 A HOH 421 5 HOH HOH 421 A HOH 422 5 HOH HOH 422 A HOH 424 5 HOH HOH 424 A HOH 426 5 HOH HOH 426 A HOH 427 5 HOH HOH 427 A HOH 428 5 HOH HOH 428 A HOH 430 5 HOH HOH 430 A HOH 433 5 HOH HOH 433 A HOH 434 5 HOH HOH 434 A HOH 437 5 HOH HOH 437 A HOH 439 5 HOH HOH 439 A HOH 440 5 HOH HOH 440 A HOH 442 5 HOH HOH 442 A HOH 443 5 HOH HOH 443 A HOH 444 5 HOH HOH 444 A HOH 446 5 HOH HOH 446 A HOH 449 5 HOH HOH 449 A HOH 450 5 HOH HOH 450 A HOH 456 5 HOH HOH 456 A HOH 461 5 HOH HOH 461 A HOH 462 5 HOH HOH 462 A HOH 465 5 HOH HOH 465 A HOH 466 5 HOH HOH 466 A HOH 470 5 HOH HOH 470 A HOH 472 5 HOH HOH 472 A HOH 473 5 HOH HOH 473 A HOH 474 5 HOH HOH 474 A HOH 478 5 HOH HOH 478 A HOH 479 5 HOH HOH 479 A HOH 480 5 HOH HOH 480 A HOH 481 5 HOH HOH 481 A HOH 482 5 HOH HOH 482 A HOH 483 5 HOH HOH 483 A HOH 484 5 HOH HOH 484 A HOH 485 5 HOH HOH 485 A HOH 486 5 HOH HOH 486 A HOH 487 5 HOH HOH 487 A HOH 488 5 HOH HOH 488 A HOH 495 5 HOH HOH 495 A HOH 496 5 HOH HOH 496 A HOH 497 5 HOH HOH 497 A HOH 498 5 HOH HOH 498 A HOH 499 5 HOH HOH 499 A HOH 500 5 HOH HOH 500 A HOH 501 5 HOH HOH 501 A HOH 512 5 HOH HOH 512 A HOH 513 5 HOH HOH 513 A HOH 515 5 HOH HOH 515 A HOH 519 5 HOH HOH 519 A HOH 520 5 HOH HOH 520 A HOH 521 5 HOH HOH 521 A HOH 522 5 HOH HOH 522 A HOH 523 5 HOH HOH 523 A HOH 524 5 HOH HOH 524 A HOH 525 5 HOH HOH 525 A HOH 526 5 HOH HOH 526 A HOH 527 5 HOH HOH 527 A HOH 528 5 HOH HOH 528 A HOH 529 5 HOH HOH 529 A HOH 530 5 HOH HOH 530 A HOH 531 5 HOH HOH 531 A HOH 532 5 HOH HOH 532 A HOH 533 5 HOH HOH 533 A HOH 534 5 HOH HOH 534 A HOH 535 5 HOH HOH 535 A HOH 536 5 HOH HOH 536 A HOH 538 5 HOH HOH 538 A HOH 306 5 HOH HOH 306 B HOH 310 5 HOH HOH 310 B HOH 312 5 HOH HOH 312 B HOH 315 5 HOH HOH 315 B HOH 318 5 HOH HOH 318 B HOH 321 5 HOH HOH 321 B HOH 322 5 HOH HOH 322 B HOH 323 5 HOH HOH 323 B HOH 328 5 HOH HOH 328 B HOH 329 5 HOH HOH 329 B HOH 331 5 HOH HOH 331 B HOH 332 5 HOH HOH 332 B HOH 337 5 HOH HOH 337 B HOH 339 5 HOH HOH 339 B HOH 341 5 HOH HOH 341 B HOH 343 5 HOH HOH 343 B HOH 345 5 HOH HOH 345 B HOH 349 5 HOH HOH 349 B HOH 350 5 HOH HOH 350 B HOH 353 5 HOH HOH 353 B HOH 354 5 HOH HOH 354 B HOH 355 5 HOH HOH 355 B HOH 359 5 HOH HOH 359 B HOH 360 5 HOH HOH 360 B HOH 361 5 HOH HOH 361 B HOH 362 5 HOH HOH 362 B HOH 366 5 HOH HOH 366 B HOH 375 5 HOH HOH 375 B HOH 376 5 HOH HOH 376 B HOH 377 5 HOH HOH 377 B HOH 378 5 HOH HOH 378 B HOH 390 5 HOH HOH 390 B HOH 391 5 HOH HOH 391 B HOH 392 5 HOH HOH 392 B HOH 393 5 HOH HOH 393 B HOH 394 5 HOH HOH 394 B HOH 395 5 HOH HOH 395 B HOH 396 5 HOH HOH 396 B HOH 397 5 HOH HOH 397 B HOH 398 5 HOH HOH 398 B HOH 399 5 HOH HOH 399 B HOH 400 5 HOH HOH 400 B HOH 401 5 HOH HOH 401 B HOH 402 5 HOH HOH 402 B HOH 403 5 HOH HOH 403 B HOH 404 5 HOH HOH 404 B HOH 405 5 HOH HOH 405 B HOH 406 5 HOH HOH 406 B HOH 407 5 HOH HOH 407 B HOH 408 5 HOH HOH 408 B HOH 409 5 HOH HOH 409 B HOH 410 5 HOH HOH 410 B HOH 412 5 HOH HOH 412 B HOH 413 5 HOH HOH 413 B HOH 414 5 HOH HOH 414 B HOH 415 5 HOH HOH 415 B HOH 423 5 HOH HOH 423 B HOH 425 5 HOH HOH 425 B HOH 429 5 HOH HOH 429 B HOH 431 5 HOH HOH 431 B HOH 432 5 HOH HOH 432 B HOH 435 5 HOH HOH 435 B HOH 436 5 HOH HOH 436 B HOH 438 5 HOH HOH 438 B HOH 441 5 HOH HOH 441 B HOH 445 5 HOH HOH 445 B HOH 447 5 HOH HOH 447 B HOH 448 5 HOH HOH 448 B HOH 451 5 HOH HOH 451 B HOH 452 5 HOH HOH 452 B HOH 453 5 HOH HOH 453 B HOH 454 5 HOH HOH 454 B HOH 455 5 HOH HOH 455 B HOH 457 5 HOH HOH 457 B HOH 458 5 HOH HOH 458 B HOH 459 5 HOH HOH 459 B HOH 460 5 HOH HOH 460 B HOH 463 5 HOH HOH 463 B HOH 464 5 HOH HOH 464 B HOH 467 5 HOH HOH 467 B HOH 468 5 HOH HOH 468 B HOH 469 5 HOH HOH 469 B HOH 471 5 HOH HOH 471 B HOH 475 5 HOH HOH 475 B HOH 476 5 HOH HOH 476 B HOH 477 5 HOH HOH 477 B HOH 489 5 HOH HOH 489 B HOH 490 5 HOH HOH 490 B HOH 491 5 HOH HOH 491 B HOH 492 5 HOH HOH 492 B HOH 493 5 HOH HOH 493 B HOH 494 5 HOH HOH 494 B HOH 502 5 HOH HOH 502 B HOH 503 5 HOH HOH 503 B HOH 504 5 HOH HOH 504 B HOH 505 5 HOH HOH 505 B HOH 506 5 HOH HOH 506 B HOH 507 5 HOH HOH 507 B HOH 508 5 HOH HOH 508 B HOH 509 5 HOH HOH 509 B HOH 510 5 HOH HOH 510 B HOH 511 5 HOH HOH 511 B HOH 514 5 HOH HOH 514 B HOH 516 5 HOH HOH 516 B HOH 517 5 HOH HOH 517 B HOH 518 5 HOH HOH 518 B HOH 537 5 HOH HOH 537 B n 1 1 A LEU 2 n 2 LEU 2 A ASP 3 n 3 ASP 3 A SER 4 n 4 SER 4 A PHE 5 n 5 PHE 5 A GLU 6 n 6 GLU 6 A ILE 7 n 7 ILE 7 A LEU 8 n 8 LEU 8 A LYS 9 n 9 LYS 9 A ALA 10 n 10 ALA 10 A LEU 11 n 11 LEU 11 A LYS 12 n 12 LYS 12 A SER 13 n 13 SER 13 A LEU 14 n 14 LEU 14 A ASP 15 n 15 ASP 15 A LEU 16 n 16 LEU 16 A LEU 17 n 17 LEU 17 A LYS 18 n 18 LYS 18 A ASN 19 n 19 ASN 19 A ALA 20 n 20 ALA 20 A PRO 21 n 21 PRO 21 A ALA 22 n 22 ALA 22 A TRP 23 n 23 TRP 23 A TRP 24 n 24 TRP 24 A TRP 25 n 25 TRP 25 A PRO 26 n 26 PRO 26 A ASN 27 n 27 ASN 27 A ALA 28 n 28 ALA 28 A LEU 29 n 29 LEU 29 A LYS 30 n 30 LYS 30 A PHE 31 n 31 PHE 31 A GLU 32 n 32 GLU 32 A ALA 33 n 33 ALA 33 A LEU 34 n 34 LEU 34 A LEU 35 n 35 LEU 35 A GLY 36 n 36 GLY 36 A ALA 37 n 37 ALA 37 A VAL 38 n 38 VAL 38 A LEU 39 n 39 LEU 39 A THR 40 n 40 THR 40 A GLN 41 n 41 GLN 41 A ASN 42 n 42 ASN 42 A THR 43 n 43 THR 43 A LYS 44 n 44 LYS 44 A PHE 45 n 45 PHE 45 A GLU 46 n 46 GLU 46 A ALA 47 n 47 ALA 47 A VAL 48 n 48 VAL 48 A LEU 49 n 49 LEU 49 A LYS 50 n 50 LYS 50 A SER 51 n 51 SER 51 A LEU 52 n 52 LEU 52 A GLU 53 n 53 GLU 53 A ASN 54 n 54 ASN 54 A LEU 55 n 55 LEU 55 A LYS 56 n 56 LYS 56 A ASN 57 n 57 ASN 57 A ALA 58 n 58 ALA 58 A PHE 59 n 59 PHE 59 A ILE 60 n 60 ILE 60 A LEU 61 n 61 LEU 61 A GLU 62 n 62 GLU 62 A ASN 63 n 63 ASN 63 A ASP 64 n 64 ASP 64 A ASP 65 n 65 ASP 65 A GLU 66 n 66 GLU 66 A ILE 67 n 67 ILE 67 A ASN 68 n 68 ASN 68 A LEU 69 n 69 LEU 69 A LYS 70 n 70 LYS 70 A LYS 71 n 71 LYS 71 A ILE 72 n 72 ILE 72 A ALA 73 n 73 ALA 73 A TYR 74 n 74 TYR 74 A ILE 75 n 75 ILE 75 A GLU 76 n 76 GLU 76 A PHE 77 n 77 PHE 77 A SER 78 n 78 SER 78 A LYS 79 n 79 LYS 79 A LEU 80 n 80 LEU 80 A ALA 81 n 81 ALA 81 A GLU 82 n 82 GLU 82 A CYS 83 n 83 CYS 83 A VAL 84 n 84 VAL 84 A ARG 85 n 85 ARG 85 A PRO 86 n 86 PRO 86 A SER 87 n 87 SER 87 A GLY 88 n 88 GLY 88 A PHE 89 n 89 PHE 89 A TYR 90 n 90 TYR 90 A ASN 91 n 91 ASN 91 A GLN 92 n 92 GLN 92 A LYS 93 n 93 LYS 93 A ALA 94 n 94 ALA 94 A LYS 95 n 95 LYS 95 A ARG 96 n 96 ARG 96 A LEU 97 n 97 LEU 97 A ILE 98 n 98 ILE 98 A ASP 99 n 99 ASP 99 A LEU 100 n 100 LEU 100 A SER 101 n 101 SER 101 A GLY 102 n 102 GLY 102 A ASN 103 n 103 ASN 103 A ILE 104 n 104 ILE 104 A LEU 105 n 105 LEU 105 A LYS 106 n 106 LYS 106 A ASP 107 n 107 ASP 107 A PHE 108 n 108 PHE 108 A GLN 109 n 109 GLN 109 A SER 110 n 110 SER 110 A PHE 111 n 111 PHE 111 A GLU 112 n 112 GLU 112 A ASN 113 n 113 ASN 113 A PHE 114 n 114 PHE 114 A LYS 115 n 115 LYS 115 A GLN 116 n 116 GLN 116 A GLU 117 n 117 GLU 117 A VAL 118 n 118 VAL 118 A THR 119 n 119 THR 119 A ARG 120 n 120 ARG 120 A GLU 121 n 121 GLU 121 A TRP 122 n 122 TRP 122 A LEU 123 n 123 LEU 123 A LEU 124 n 124 LEU 124 A ASP 125 n 125 ASP 125 A GLN 126 n 126 GLN 126 A LYS 127 n 127 LYS 127 A GLY 128 n 128 GLY 128 A ILE 129 n 129 ILE 129 A GLY 130 n 130 GLY 130 A LYS 131 n 131 LYS 131 A GLU 132 n 132 GLU 132 A SER 133 n 133 SER 133 A ALA 134 n 134 ALA 134 A ASP 135 n 135 ASP 135 A ALA 136 n 136 ALA 136 A ILE 137 n 137 ILE 137 A LEU 138 n 138 LEU 138 A CYS 139 n 139 CYS 139 A TYR 140 n 140 TYR 140 A ALA 141 n 141 ALA 141 A CYS 142 n 142 CYS 142 A ALA 143 n 143 ALA 143 A LYS 144 n 144 LYS 144 A GLU 145 n 145 GLU 145 A VAL 146 n 146 VAL 146 A MET 147 n 147 MET 147 A VAL 148 n 148 VAL 148 A VAL 149 n 149 VAL 149 A ASP 150 n 150 ASP 150 A LYS 151 n 151 LYS 151 A TYR 152 n 152 TYR 152 A SER 153 n 153 SER 153 A TYR 154 n 154 TYR 154 A LEU 155 n 155 LEU 155 A PHE 156 n 156 PHE 156 A LEU 157 n 157 LEU 157 A LYS 158 n 158 LYS 158 A LYS 159 n 159 LYS 159 A LEU 160 n 160 LEU 160 A GLY 161 n 161 GLY 161 A ILE 162 n 162 ILE 162 A GLU 163 n 163 GLU 163 A ILE 164 n 164 ILE 164 A GLU 165 n 165 GLU 165 A ASP 166 n 166 ASP 166 A TYR 167 n 167 TYR 167 A ASP 168 n 168 ASP 168 A GLU 169 n 169 GLU 169 A LEU 170 n 170 LEU 170 A GLN 171 n 171 GLN 171 A HIS 172 n 172 HIS 172 A PHE 173 n 173 PHE 173 A PHE 174 n 174 PHE 174 A GLU 175 n 175 GLU 175 A LYS 176 n 176 LYS 176 A GLY 177 n 177 GLY 177 A VAL 178 n 178 VAL 178 A GLN 179 n 179 GLN 179 A GLU 180 n 180 GLU 180 A ASN 181 n 181 ASN 181 A LEU 182 n 182 LEU 182 A ASN 183 n 183 ASN 183 A SER 184 n 184 SER 184 A ALA 185 n 185 ALA 185 A LEU 186 n 186 LEU 186 A ALA 187 n 187 ALA 187 A LEU 188 n 188 LEU 188 A TYR 189 n 189 TYR 189 A GLU 190 n 190 GLU 190 A ASN 191 n 191 ASN 191 A THR 192 n 192 THR 192 A ILE 193 n 193 ILE 193 A SER 194 n 194 SER 194 A LEU 195 n 195 LEU 195 A ALA 196 n 196 ALA 196 A GLN 197 n 197 GLN 197 A LEU 198 n 198 LEU 198 A TYR 199 n 199 TYR 199 A ALA 200 n 200 ALA 200 A ARG 201 n 201 ARG 201 A PHE 202 n 202 PHE 202 A HIS 203 n 203 HIS 203 A GLY 204 n 204 GLY 204 A KCX 205 n 205 KCX 205 A ILE 206 n 206 ILE 206 A VAL 207 n 207 VAL 207 A GLU 208 n 208 GLU 208 A PHE 209 n 209 PHE 209 A SER 210 n 210 SER 210 A LYS 211 n 211 LYS 211 A GLN 212 n 212 GLN 212 A LYS 213 n 213 LYS 213 A LEU 214 n 214 LEU 214 A GLU 215 n 215 GLU 215 A LEU 216 n 216 LEU 216 A LYS 217 n 217 LYS 217 A LEU 218 n 218 LEU 218 A n 1 1 B LEU 2 n 2 LEU 2 B ASP 3 n 3 ASP 3 B SER 4 n 4 SER 4 B PHE 5 n 5 PHE 5 B GLU 6 n 6 GLU 6 B ILE 7 n 7 ILE 7 B LEU 8 n 8 LEU 8 B LYS 9 n 9 LYS 9 B ALA 10 n 10 ALA 10 B LEU 11 n 11 LEU 11 B LYS 12 n 12 LYS 12 B SER 13 n 13 SER 13 B LEU 14 n 14 LEU 14 B ASP 15 n 15 ASP 15 B LEU 16 n 16 LEU 16 B LEU 17 n 17 LEU 17 B LYS 18 n 18 LYS 18 B ASN 19 n 19 ASN 19 B ALA 20 n 20 ALA 20 B PRO 21 n 21 PRO 21 B ALA 22 n 22 ALA 22 B TRP 23 n 23 TRP 23 B TRP 24 n 24 TRP 24 B TRP 25 n 25 TRP 25 B PRO 26 n 26 PRO 26 B ASN 27 n 27 ASN 27 B ALA 28 n 28 ALA 28 B LEU 29 n 29 LEU 29 B LYS 30 n 30 LYS 30 B PHE 31 n 31 PHE 31 B GLU 32 n 32 GLU 32 B ALA 33 n 33 ALA 33 B LEU 34 n 34 LEU 34 B LEU 35 n 35 LEU 35 B GLY 36 n 36 GLY 36 B ALA 37 n 37 ALA 37 B VAL 38 n 38 VAL 38 B LEU 39 n 39 LEU 39 B THR 40 n 40 THR 40 B GLN 41 n 41 GLN 41 B ASN 42 n 42 ASN 42 B THR 43 n 43 THR 43 B LYS 44 n 44 LYS 44 B PHE 45 n 45 PHE 45 B GLU 46 n 46 GLU 46 B ALA 47 n 47 ALA 47 B VAL 48 n 48 VAL 48 B LEU 49 n 49 LEU 49 B LYS 50 n 50 LYS 50 B SER 51 n 51 SER 51 B LEU 52 n 52 LEU 52 B GLU 53 n 53 GLU 53 B ASN 54 n 54 ASN 54 B LEU 55 n 55 LEU 55 B LYS 56 n 56 LYS 56 B ASN 57 n 57 ASN 57 B ALA 58 n 58 ALA 58 B PHE 59 n 59 PHE 59 B ILE 60 n 60 ILE 60 B LEU 61 n 61 LEU 61 B GLU 62 n 62 GLU 62 B ASN 63 n 63 ASN 63 B ASP 64 n 64 ASP 64 B ASP 65 n 65 ASP 65 B GLU 66 n 66 GLU 66 B ILE 67 n 67 ILE 67 B ASN 68 n 68 ASN 68 B LEU 69 n 69 LEU 69 B LYS 70 n 70 LYS 70 B LYS 71 n 71 LYS 71 B ILE 72 n 72 ILE 72 B ALA 73 n 73 ALA 73 B TYR 74 n 74 TYR 74 B ILE 75 n 75 ILE 75 B GLU 76 n 76 GLU 76 B PHE 77 n 77 PHE 77 B SER 78 n 78 SER 78 B LYS 79 n 79 LYS 79 B LEU 80 n 80 LEU 80 B ALA 81 n 81 ALA 81 B GLU 82 n 82 GLU 82 B CYS 83 n 83 CYS 83 B VAL 84 n 84 VAL 84 B ARG 85 n 85 ARG 85 B PRO 86 n 86 PRO 86 B SER 87 n 87 SER 87 B GLY 88 n 88 GLY 88 B PHE 89 n 89 PHE 89 B TYR 90 n 90 TYR 90 B ASN 91 n 91 ASN 91 B GLN 92 n 92 GLN 92 B LYS 93 n 93 LYS 93 B ALA 94 n 94 ALA 94 B LYS 95 n 95 LYS 95 B ARG 96 n 96 ARG 96 B LEU 97 n 97 LEU 97 B ILE 98 n 98 ILE 98 B ASP 99 n 99 ASP 99 B LEU 100 n 100 LEU 100 B SER 101 n 101 SER 101 B GLY 102 n 102 GLY 102 B ASN 103 n 103 ASN 103 B ILE 104 n 104 ILE 104 B LEU 105 n 105 LEU 105 B LYS 106 n 106 LYS 106 B ASP 107 n 107 ASP 107 B PHE 108 n 108 PHE 108 B GLN 109 n 109 GLN 109 B SER 110 n 110 SER 110 B PHE 111 n 111 PHE 111 B GLU 112 n 112 GLU 112 B ASN 113 n 113 ASN 113 B PHE 114 n 114 PHE 114 B LYS 115 n 115 LYS 115 B GLN 116 n 116 GLN 116 B GLU 117 n 117 GLU 117 B VAL 118 n 118 VAL 118 B THR 119 n 119 THR 119 B ARG 120 n 120 ARG 120 B GLU 121 n 121 GLU 121 B TRP 122 n 122 TRP 122 B LEU 123 n 123 LEU 123 B LEU 124 n 124 LEU 124 B ASP 125 n 125 ASP 125 B GLN 126 n 126 GLN 126 B LYS 127 n 127 LYS 127 B GLY 128 n 128 GLY 128 B ILE 129 n 129 ILE 129 B GLY 130 n 130 GLY 130 B LYS 131 n 131 LYS 131 B GLU 132 n 132 GLU 132 B SER 133 n 133 SER 133 B ALA 134 n 134 ALA 134 B ASP 135 n 135 ASP 135 B ALA 136 n 136 ALA 136 B ILE 137 n 137 ILE 137 B LEU 138 n 138 LEU 138 B CYS 139 n 139 CYS 139 B TYR 140 n 140 TYR 140 B ALA 141 n 141 ALA 141 B CYS 142 n 142 CYS 142 B ALA 143 n 143 ALA 143 B LYS 144 n 144 LYS 144 B GLU 145 n 145 GLU 145 B VAL 146 n 146 VAL 146 B MET 147 n 147 MET 147 B VAL 148 n 148 VAL 148 B VAL 149 n 149 VAL 149 B ASP 150 n 150 ASP 150 B LYS 151 n 151 LYS 151 B TYR 152 n 152 TYR 152 B SER 153 n 153 SER 153 B TYR 154 n 154 TYR 154 B LEU 155 n 155 LEU 155 B PHE 156 n 156 PHE 156 B LEU 157 n 157 LEU 157 B LYS 158 n 158 LYS 158 B LYS 159 n 159 LYS 159 B LEU 160 n 160 LEU 160 B GLY 161 n 161 GLY 161 B ILE 162 n 162 ILE 162 B GLU 163 n 163 GLU 163 B ILE 164 n 164 ILE 164 B GLU 165 n 165 GLU 165 B ASP 166 n 166 ASP 166 B TYR 167 n 167 TYR 167 B ASP 168 n 168 ASP 168 B GLU 169 n 169 GLU 169 B LEU 170 n 170 LEU 170 B GLN 171 n 171 GLN 171 B HIS 172 n 172 HIS 172 B PHE 173 n 173 PHE 173 B PHE 174 n 174 PHE 174 B GLU 175 n 175 GLU 175 B LYS 176 n 176 LYS 176 B GLY 177 n 177 GLY 177 B VAL 178 n 178 VAL 178 B GLN 179 n 179 GLN 179 B GLU 180 n 180 GLU 180 B ASN 181 n 181 ASN 181 B LEU 182 n 182 LEU 182 B ASN 183 n 183 ASN 183 B SER 184 n 184 SER 184 B ALA 185 n 185 ALA 185 B LEU 186 n 186 LEU 186 B ALA 187 n 187 ALA 187 B LEU 188 n 188 LEU 188 B TYR 189 n 189 TYR 189 B GLU 190 n 190 GLU 190 B ASN 191 n 191 ASN 191 B THR 192 n 192 THR 192 B ILE 193 n 193 ILE 193 B SER 194 n 194 SER 194 B LEU 195 n 195 LEU 195 B ALA 196 n 196 ALA 196 B GLN 197 n 197 GLN 197 B LEU 198 n 198 LEU 198 B TYR 199 n 199 TYR 199 B ALA 200 n 200 ALA 200 B ARG 201 n 201 ARG 201 B PHE 202 n 202 PHE 202 B HIS 203 n 203 HIS 203 B GLY 204 n 204 GLY 204 B KCX 205 n 205 KCX 205 B ILE 206 n 206 ILE 206 B VAL 207 n 207 VAL 207 B GLU 208 n 208 GLU 208 B PHE 209 n 209 PHE 209 B SER 210 n 210 SER 210 B LYS 211 n 211 LYS 211 B GLN 212 n 212 GLN 212 B LYS 213 n 213 LYS 213 B LEU 214 n 214 LEU 214 B GLU 215 n 215 GLU 215 B LEU 216 n 216 LEU 216 B LYS 217 n 217 LYS 217 B LEU 218 n 218 LEU 218 B author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric A KCX 205 LYSINE NZ-CARBOXYLIC ACID A KCX 205 LYS B KCX 205 LYSINE NZ-CARBOXYLIC ACID B KCX 205 LYS 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CG LYS 18 A CG LYS 18 1 Y 1 A CD LYS 18 A CD LYS 18 1 Y 1 A CE LYS 18 A CE LYS 18 1 Y 1 A NZ LYS 18 A NZ LYS 18 1 Y 1 A CE LYS 30 A CE LYS 30 1 Y 1 A NZ LYS 30 A NZ LYS 30 1 Y 1 A CD LYS 44 A CD LYS 44 1 Y 1 A CE LYS 44 A CE LYS 44 1 Y 1 A NZ LYS 44 A NZ LYS 44 1 Y 1 A CD LYS 50 A CD LYS 50 1 Y 1 A CE LYS 50 A CE LYS 50 1 Y 1 A NZ LYS 50 A NZ LYS 50 1 Y 1 A NZ LYS 71 A NZ LYS 71 1 Y 1 A CD GLU 76 A CD GLU 76 1 Y 1 A OE1 GLU 76 A OE1 GLU 76 1 Y 1 A OE2 GLU 76 A OE2 GLU 76 1 Y 1 A CG GLU 82 A CG GLU 82 1 Y 1 A CD GLU 82 A CD GLU 82 1 Y 1 A OE1 GLU 82 A OE1 GLU 82 1 Y 1 A OE2 GLU 82 A OE2 GLU 82 1 Y 1 A CD LYS 151 A CD LYS 151 1 Y 1 A CE LYS 151 A CE LYS 151 1 Y 1 A NZ LYS 151 A NZ LYS 151 1 Y 1 A CD LYS 159 A CD LYS 159 1 Y 1 A CE LYS 159 A CE LYS 159 1 Y 1 A NZ LYS 159 A NZ LYS 159 1 Y 1 A CD GLU 163 A CD GLU 163 1 Y 1 A OE1 GLU 163 A OE1 GLU 163 1 Y 1 A OE2 GLU 163 A OE2 GLU 163 1 Y 1 A CD GLU 215 A CD GLU 215 1 Y 1 A OE1 GLU 215 A OE1 GLU 215 1 Y 1 A OE2 GLU 215 A OE2 GLU 215 1 Y 1 A CG LYS 217 A CG LYS 217 1 Y 1 A CD LYS 217 A CD LYS 217 1 Y 1 A CE LYS 217 A CE LYS 217 1 Y 1 A NZ LYS 217 A NZ LYS 217 1 Y 1 A C LEU 218 A C LEU 218 1 Y 1 A O LEU 218 A O LEU 218 1 Y 1 A CB LEU 218 A CB LEU 218 1 Y 1 A CG LEU 218 A CG LEU 218 1 Y 1 A CD1 LEU 218 A CD1 LEU 218 1 Y 1 A CD2 LEU 218 A CD2 LEU 218 1 Y 1 B CD GLU 32 B CD GLU 32 1 Y 1 B CG LYS 44 B CG LYS 44 1 Y 1 B CD LYS 44 B CD LYS 44 1 Y 1 B CE LYS 44 B CE LYS 44 1 Y 1 B NZ LYS 44 B NZ LYS 44 1 Y 1 B CD LYS 50 B CD LYS 50 1 Y 1 B CE LYS 50 B CE LYS 50 1 Y 1 B NZ LYS 50 B NZ LYS 50 1 Y 1 B CG GLU 62 B CG GLU 62 1 Y 1 B CD GLU 62 B CD GLU 62 1 Y 1 B OE1 GLU 62 B OE1 GLU 62 1 Y 1 B OE2 GLU 62 B OE2 GLU 62 1 Y 1 B OE1 GLU 76 B OE1 GLU 76 1 Y 1 B OE2 GLU 76 B OE2 GLU 76 1 Y 1 B NZ LYS 106 B NZ LYS 106 1 Y 1 B CD GLU 163 B CD GLU 163 1 Y 1 B OE1 GLU 163 B OE1 GLU 163 1 Y 1 B OE2 GLU 163 B OE2 GLU 163 1 Y 1 B CG GLU 165 B CG GLU 165 1 Y 1 B CD GLU 165 B CD GLU 165 1 Y 1 B OE1 GLU 165 B OE1 GLU 165 1 Y 1 B OE2 GLU 165 B OE2 GLU 165 1 Y 1 B CG LEU 214 B CG LEU 214 1 Y 1 B CD1 LEU 214 B CD1 LEU 214 1 Y 1 B CD2 LEU 214 B CD2 LEU 214 1 Y 1 B CD GLU 215 B CD GLU 215 1 Y 1 B OE1 GLU 215 B OE1 GLU 215 1 Y 1 B OE2 GLU 215 B OE2 GLU 215 1 Y 1 B CD LYS 217 B CD LYS 217 1 Y 1 B CE LYS 217 B CE LYS 217 1 Y 1 B NZ LYS 217 B NZ LYS 217 1 Y 1 A VAL 1 A VAL 1 1 Y 1 B VAL 1 B VAL 1 1 Y 1 5.54 0.90 118.30 123.84 A A A CB CG OD2 ASP ASP ASP 150 150 150 N 1 13.91 1.70 111.00 124.91 A A A CB CG CD2 LEU LEU LEU 170 170 170 N 1 5.76 0.90 118.30 124.06 B B B CB CG OD2 ASP ASP ASP 64 64 64 N 1 10.76 1.70 111.00 121.76 B B B CB CG CD2 LEU LEU LEU 170 170 170 N 1 A TRP 24 70.24 -55.66 1 A GLU 62 -132.48 -148.70 1 A GLN 109 76.94 -36.43 1 A ASP 150 -171.84 -179.57 1 B TRP 24 68.26 -54.71 1 B GLU 62 -127.14 -154.07 1 B GLN 109 77.50 -32.10 1 B ASP 150 -170.16 -178.07 22.947 0.20 0.00 -0.32 0.26 0.00 -0.64 0.970 0.960 ANISOU PARAMETERS WERE DERIVED FROM REFINED TLS PARAMETERS (5 TLS GROUPS) AND HELD FIXED DURING REFINEMENT 0.18517 0.15126 0.15301 1.64 24.41 3124 57518 57518 5.2 99.94 1.326 0.046 RANDOM 2 THROUGHOUT 0.00 MAD 0.100 0.079 0.80 0.80 1.40 MAXIMUM LIKELIHOOD WITH PHASES BABINET MODEL WITH MASK 1.64 24.41 254 3729 1 0 3474 0.021 0.022 3557 1.602 1.968 4799 4.932 5.000 432 0.160 0.200 537 0.007 0.020 2622 0.213 0.200 1515 0.129 0.200 132 0.163 0.200 48 0.140 0.200 12 1.943 1.500 2155 3.065 2.000 3439 4.799 3.000 1402 6.847 4.500 1360 0.194 0.143 1.681 150 2809 20 19.50 1.64 50 1PU6 60643 60643 0 0 0.099 2,1 21.8 8.1 99.9 1.64 1.71 4.3 0.337 5.7 99.7 refinement REFMAC 5.1.24 data reduction DENZO data scaling SCALEPACK phasing MLPHARE 3-METHYLADENINE DNA GLYCOSYLASE Crystal structure of H.pylori 3-methyladenine DNA glycosylase (MagIII) 1 N N 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N 5 N N A ASP 3 A ASP 3 HELX_P A SER 13 A SER 13 1 1 11 A LYS 30 A LYS 30 HELX_P A THR 40 A THR 40 1 2 11 A LYS 44 A LYS 44 HELX_P A ALA 58 A ALA 58 1 3 15 A ASP 64 A ASP 64 HELX_P A ILE 75 A ILE 75 1 4 12 A GLU 76 A GLU 76 HELX_P A VAL 84 A VAL 84 1 5 9 A ARG 85 A ARG 85 HELX_P A GLY 88 A GLY 88 5 6 4 A PHE 89 A PHE 89 HELX_P A GLN 109 A GLN 109 1 7 21 A SER 110 A SER 110 HELX_P A VAL 118 A VAL 118 1 8 9 A THR 119 A THR 119 HELX_P A ASP 125 A ASP 125 1 9 7 A GLY 130 A GLY 130 HELX_P A ALA 141 A ALA 141 1 10 12 A ASP 150 A ASP 150 HELX_P A LEU 160 A LEU 160 1 11 11 A ASP 166 A ASP 166 HELX_P A GLU 180 A GLU 180 1 12 15 A ASN 181 A ASN 181 HELX_P A LEU 188 A LEU 188 1 13 8 A SER 194 A SER 194 HELX_P A LEU 216 A LEU 216 1 14 23 B ASP 3 B ASP 3 HELX_P B SER 13 B SER 13 1 15 11 B LYS 30 B LYS 30 HELX_P B THR 40 B THR 40 1 16 11 B LYS 44 B LYS 44 HELX_P B ALA 58 B ALA 58 1 17 15 B ASP 64 B ASP 64 HELX_P B ILE 75 B ILE 75 1 18 12 B GLU 76 B GLU 76 HELX_P B VAL 84 B VAL 84 1 19 9 B ARG 85 B ARG 85 HELX_P B GLY 88 B GLY 88 5 20 4 B PHE 89 B PHE 89 HELX_P B GLN 109 B GLN 109 1 21 21 B SER 110 B SER 110 HELX_P B VAL 118 B VAL 118 1 22 9 B THR 119 B THR 119 HELX_P B ASP 125 B ASP 125 1 23 7 B GLY 130 B GLY 130 HELX_P B ALA 141 B ALA 141 1 24 12 B ASP 150 B ASP 150 HELX_P B LEU 160 B LEU 160 1 25 11 B ASP 166 B ASP 166 HELX_P B GLU 180 B GLU 180 1 26 15 B ASN 181 B ASN 181 HELX_P B LEU 188 B LEU 188 1 27 8 B SER 194 B SER 194 HELX_P B LEU 216 B LEU 216 1 28 23 covale 1.335 A GLY 204 A C GLY 204 1_555 A KCX 205 A N KCX 205 1_555 covale 1.344 A KCX 205 A C KCX 205 1_555 A ILE 206 A N ILE 206 1_555 covale 1.343 B GLY 204 B C GLY 204 1_555 B KCX 205 B N KCX 205 1_555 covale 1.323 B KCX 205 B C KCX 205 1_555 B ILE 206 B N ILE 206 1_555 HYDROLASE Helix-hairpin-helix, 3-Methyladenine, BASE EXCISION REPAIR, GLYCOSYLASE, HYDROLASE O25323_HELPY UNP 1 1 O25323 MLDSFEILKALKSLDLLKNAPAWWWPNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKL AECVRPSGFYNQKAKRLIDLSKNILKDFQSFENFKQEVTKEWLLDQKGIGKESADAILCYVCAKEVMVVDKYSYLFLKKL GIEIEDYDELQHFFEKGVQENLNSALALYENTISLAQLYARFHGKIVEFSKQKLELKL 1 218 1PU6 1 218 O25323 A 1 1 218 1 218 1PU6 1 218 O25323 B 1 1 218 1 MET SEE REMARK 999 VAL 1 1PU6 A O25323 UNP 1 1 1 LYS SEE REMARK 999 GLY 102 1PU6 A O25323 UNP 102 102 1 LYS SEE REMARK 999 ARG 120 1PU6 A O25323 UNP 120 120 1 VAL SEE REMARK 999 ALA 141 1PU6 A O25323 UNP 141 141 1 LYS MODIFIED RESIDUE KCX 205 1PU6 A O25323 UNP 205 205 2 MET SEE REMARK 999 VAL 1 1PU6 B O25323 UNP 1 1 2 LYS SEE REMARK 999 GLY 102 1PU6 B O25323 UNP 102 102 2 LYS SEE REMARK 999 ARG 120 1PU6 B O25323 UNP 120 120 2 VAL SEE REMARK 999 ALA 141 1PU6 B O25323 UNP 141 141 2 LYS MODIFIED RESIDUE KCX 205 1PU6 B O25323 UNP 205 205 BINDING SITE FOR RESIDUE CL A 301 Software 3 BINDING SITE FOR RESIDUE BME A 302 Software 6 BINDING SITE FOR RESIDUE MPD B 303 Software 3 BINDING SITE FOR RESIDUE MPD B 304 Software 4 A GLN 41 A GLN 41 3 1_555 A ASN 42 A ASN 42 3 1_555 A ARG 96 A ARG 96 3 1_555 A TRP 24 A TRP 24 6 1_555 A TRP 25 A TRP 25 6 1_555 A THR 40 A THR 40 6 1_555 A PHE 45 A PHE 45 6 1_555 A HOH 373 G HOH 6 1_555 A HOH 481 G HOH 6 1_555 A ALA 187 A ALA 187 3 2_756 A GLU 190 A GLU 190 3 2_756 B HOH 468 H HOH 3 1_555 A SER 184 A SER 184 4 2_756 A ALA 187 A ALA 187 4 2_756 B PHE 209 B PHE 209 4 1_555 B GLN 212 B GLN 212 4 1_555 5 C 1 2 1