0.006821
0.000000
0.002008
0.000000
0.022523
0.000000
0.000000
0.000000
0.012788
0.00000
0.00000
0.00000
Eichman, B.F.
O'Rourke, E.J.
Radicella, J.P.
Ellenberger, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
106.40
90.00
146.605
44.399
81.516
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C2 H6 O S
78.133
BETA-MERCAPTOETHANOL
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C7 H5 N5
159.148
3H-IMIDAZO[2,1-I]PURINE
1,N6-ETHENOADENINE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C7 H14 N2 O4
190.197
n
LYSINE NZ-CARBOXYLIC ACID
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
C
N
76
N
O
N
77
N
S
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
N
N
85
R
C
N
86
N
C
N
87
N
O
N
88
N
C
N
89
N
S
N
90
N
O
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
Y
98
N
N
Y
99
N
C
Y
100
N
C
Y
101
N
C
Y
102
N
N
Y
103
N
N
Y
104
N
C
Y
105
N
N
Y
106
N
C
Y
107
N
N
Y
108
N
C
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
N
N
116
S
C
N
117
N
C
N
118
N
O
N
119
N
C
N
120
N
C
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
O
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
N
N
136
S
C
N
137
N
C
N
138
N
O
N
139
N
C
N
140
N
C
N
141
N
C
N
142
N
O
N
143
N
O
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
N
N
155
N
C
N
156
N
C
N
157
N
O
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
N
N
165
S
C
N
166
N
C
N
167
N
O
N
168
N
C
Y
169
N
C
Y
170
N
N
Y
171
N
C
Y
172
N
C
Y
173
N
N
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
O
N
186
N
H
N
187
N
H
N
188
N
N
N
189
S
C
N
190
N
C
N
191
N
O
N
192
S
C
N
193
N
C
N
194
N
C
N
195
N
C
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
N
N
217
N
C
N
218
N
O
N
219
N
C
N
220
N
O
N
221
N
O
N
222
N
O
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
C
N
245
N
O
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
C
N
267
N
N
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
N
C
N
289
N
C
N
290
N
S
N
291
N
C
N
292
N
O
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
N
N
345
S
C
N
346
N
C
N
347
N
O
N
348
N
C
N
349
N
O
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
R
C
N
363
N
O
N
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
N
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
N
413
N
O
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
N
N
427
S
C
N
428
N
C
N
429
N
O
N
430
N
C
N
431
N
C
N
432
N
C
N
433
N
O
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
Y
92
N
doub
Y
93
N
sing
Y
94
N
sing
N
95
N
sing
Y
96
N
doub
Y
97
N
sing
Y
98
N
sing
Y
99
N
sing
Y
100
N
doub
N
101
N
sing
Y
102
N
doub
Y
103
N
sing
Y
104
N
sing
Y
105
N
doub
N
106
N
sing
Y
107
N
sing
Y
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
Y
168
N
sing
Y
169
N
doub
Y
170
N
doub
N
171
N
sing
Y
172
N
sing
N
173
N
sing
Y
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
doub
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
Y
302
N
doub
Y
303
N
sing
Y
304
N
sing
N
305
N
sing
Y
306
N
doub
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
Y
371
N
doub
Y
372
N
sing
Y
373
N
sing
N
374
N
sing
Y
375
N
doub
Y
376
N
sing
Y
377
N
sing
N
378
N
sing
Y
379
N
sing
Y
380
N
doub
N
381
N
sing
Y
382
N
doub
N
383
N
sing
Y
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
Y
399
N
doub
Y
400
N
sing
Y
401
N
sing
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
doub
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
UK
Embo J.
EMJODG
0897
0261-4189
22
4898
4909
10.1093/emboj/cdg505
14517230
Crystal structures of 3-methyladenine DNA glycosylase MagIII and the recognition of alkylated bases
2003
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
275
20077
20083
10.1074/jbc.M001071200
A NOVEL 3-METHYLADENINE DNA GLYCOSYLASE FROM HELICOBACTER PYLORI DEFINES A NEW CLASS WITHIN THE ENDONUCLEASE III FAMILY OF BASE EXCISION REPAIR GLYCOSYLASES
2000
10.2210/pdb1pu8/pdb
pdb_00001pu8
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
110
1
IMAGE PLATE
2002-09-03
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.542
1.0
1.542
ROTATING ANODE
SIEMENS
25218.064
3-METHYLADENINE DNA GLYCOSYLASE
2
man
polymer
159.148
3H-IMIDAZO[2,1-I]PURINE
2
syn
non-polymer
78.133
BETA-MERCAPTOETHANOL
2
syn
non-polymer
18.015
water
161
nat
water
no
yes
VLDSFEILKALKSLDLLKNAPAWWWPNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKL
AECVRPSGFYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKL
GIEIEDYDELQHFFEKGVQENLNSALALYENTISLAQLYARFHG(KCX)IVEFSKQKLELKL
VLDSFEILKALKSLDLLKNAPAWWWPNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKL
AECVRPSGFYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKL
GIEIEDYDELQHFFEKGVQENLNSALALYENTISLAQLYARFHGKIVEFSKQKLELKL
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Helicobacter
13-5
Escherichia
sample
210
Helicobacter pylori
562
Escherichia coli
PGEX-6P-1
plasmid
1
2.52
51.24
VAPOR DIFFUSION, HANGING DROP
7.0
PEG 4000, HEPES, MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Advisory
Refinement description
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
Data collection
1
0
2003-10-07
1
1
2008-04-29
1
2
2011-07-13
1
3
2023-08-16
1
4
2023-11-15
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
unliganded MagIII
3,9-dimethyladenine bound to MagIII
SEQUENCE
THE DIFFERENCES BETWEEN THE SEQUENCES IN THE 1PU6 PDB
AND IN THE DATABASE REFERENCE ARE DUE TO THE PARTICULAR
H.PYLORI STRAIN. DATABASE REFERENCE REFERS TO H.PYLORI
STRAIN J99; MAGIII WAS CLONED FROM H.PYLORI STRAIN 13/5
(SEE REFERENCE 1)
RCSB
Y
RCSB
2003-06-24
REL
REL
EA1
3H-IMIDAZO[2,1-I]PURINE
BME
BETA-MERCAPTOETHANOL
HOH
water
1PU6
PDB ENTRY 1PU6
PDB
experimental model
EDA
219
2
EA1
EA1
219
A
SEO
983
3
BME
BME
983
A
EDA
219
2
EA1
EA1
220
B
SEO
983
3
BME
BME
983
B
HOH
301
4
HOH
HOH
301
A
HOH
302
4
HOH
HOH
302
A
HOH
306
4
HOH
HOH
306
A
HOH
308
4
HOH
HOH
308
A
HOH
309
4
HOH
HOH
309
A
HOH
312
4
HOH
HOH
312
A
HOH
313
4
HOH
HOH
313
A
HOH
316
4
HOH
HOH
316
A
HOH
317
4
HOH
HOH
317
A
HOH
318
4
HOH
HOH
318
A
HOH
322
4
HOH
HOH
322
A
HOH
327
4
HOH
HOH
327
A
HOH
329
4
HOH
HOH
329
A
HOH
334
4
HOH
HOH
334
A
HOH
338
4
HOH
HOH
338
A
HOH
341
4
HOH
HOH
341
A
HOH
345
4
HOH
HOH
345
A
HOH
348
4
HOH
HOH
348
A
HOH
349
4
HOH
HOH
349
A
HOH
350
4
HOH
HOH
350
A
HOH
351
4
HOH
HOH
351
A
HOH
353
4
HOH
HOH
353
A
HOH
356
4
HOH
HOH
356
A
HOH
358
4
HOH
HOH
358
A
HOH
360
4
HOH
HOH
360
A
HOH
361
4
HOH
HOH
361
A
HOH
362
4
HOH
HOH
362
A
HOH
365
4
HOH
HOH
365
A
HOH
366
4
HOH
HOH
366
A
HOH
367
4
HOH
HOH
367
A
HOH
368
4
HOH
HOH
368
A
HOH
369
4
HOH
HOH
369
A
HOH
370
4
HOH
HOH
370
A
HOH
374
4
HOH
HOH
374
A
HOH
376
4
HOH
HOH
376
A
HOH
378
4
HOH
HOH
378
A
HOH
379
4
HOH
HOH
379
A
HOH
381
4
HOH
HOH
381
A
HOH
384
4
HOH
HOH
384
A
HOH
385
4
HOH
HOH
385
A
HOH
386
4
HOH
HOH
386
A
HOH
387
4
HOH
HOH
387
A
HOH
389
4
HOH
HOH
389
A
HOH
390
4
HOH
HOH
390
A
HOH
391
4
HOH
HOH
391
A
HOH
392
4
HOH
HOH
392
A
HOH
393
4
HOH
HOH
393
A
HOH
396
4
HOH
HOH
396
A
HOH
397
4
HOH
HOH
397
A
HOH
400
4
HOH
HOH
400
A
HOH
401
4
HOH
HOH
401
A
HOH
407
4
HOH
HOH
407
A
HOH
408
4
HOH
HOH
408
A
HOH
410
4
HOH
HOH
410
A
HOH
412
4
HOH
HOH
412
A
HOH
413
4
HOH
HOH
413
A
HOH
426
4
HOH
HOH
426
A
HOH
427
4
HOH
HOH
427
A
HOH
428
4
HOH
HOH
428
A
HOH
429
4
HOH
HOH
429
A
HOH
430
4
HOH
HOH
430
A
HOH
431
4
HOH
HOH
431
A
HOH
432
4
HOH
HOH
432
A
HOH
433
4
HOH
HOH
433
A
HOH
434
4
HOH
HOH
434
A
HOH
435
4
HOH
HOH
435
A
HOH
436
4
HOH
HOH
436
A
HOH
437
4
HOH
HOH
437
A
HOH
450
4
HOH
HOH
450
A
HOH
452
4
HOH
HOH
452
A
HOH
453
4
HOH
HOH
453
A
HOH
454
4
HOH
HOH
454
A
HOH
455
4
HOH
HOH
455
A
HOH
458
4
HOH
HOH
458
A
HOH
459
4
HOH
HOH
459
A
HOH
303
4
HOH
HOH
303
B
HOH
304
4
HOH
HOH
304
B
HOH
305
4
HOH
HOH
305
B
HOH
307
4
HOH
HOH
307
B
HOH
310
4
HOH
HOH
310
B
HOH
311
4
HOH
HOH
311
B
HOH
314
4
HOH
HOH
314
B
HOH
315
4
HOH
HOH
315
B
HOH
319
4
HOH
HOH
319
B
HOH
320
4
HOH
HOH
320
B
HOH
321
4
HOH
HOH
321
B
HOH
323
4
HOH
HOH
323
B
HOH
324
4
HOH
HOH
324
B
HOH
325
4
HOH
HOH
325
B
HOH
326
4
HOH
HOH
326
B
HOH
328
4
HOH
HOH
328
B
HOH
330
4
HOH
HOH
330
B
HOH
331
4
HOH
HOH
331
B
HOH
332
4
HOH
HOH
332
B
HOH
333
4
HOH
HOH
333
B
HOH
335
4
HOH
HOH
335
B
HOH
336
4
HOH
HOH
336
B
HOH
337
4
HOH
HOH
337
B
HOH
339
4
HOH
HOH
339
B
HOH
340
4
HOH
HOH
340
B
HOH
342
4
HOH
HOH
342
B
HOH
343
4
HOH
HOH
343
B
HOH
344
4
HOH
HOH
344
B
HOH
346
4
HOH
HOH
346
B
HOH
347
4
HOH
HOH
347
B
HOH
352
4
HOH
HOH
352
B
HOH
354
4
HOH
HOH
354
B
HOH
355
4
HOH
HOH
355
B
HOH
357
4
HOH
HOH
357
B
HOH
359
4
HOH
HOH
359
B
HOH
363
4
HOH
HOH
363
B
HOH
364
4
HOH
HOH
364
B
HOH
371
4
HOH
HOH
371
B
HOH
372
4
HOH
HOH
372
B
HOH
373
4
HOH
HOH
373
B
HOH
375
4
HOH
HOH
375
B
HOH
377
4
HOH
HOH
377
B
HOH
380
4
HOH
HOH
380
B
HOH
382
4
HOH
HOH
382
B
HOH
383
4
HOH
HOH
383
B
HOH
388
4
HOH
HOH
388
B
HOH
394
4
HOH
HOH
394
B
HOH
395
4
HOH
HOH
395
B
HOH
398
4
HOH
HOH
398
B
HOH
399
4
HOH
HOH
399
B
HOH
402
4
HOH
HOH
402
B
HOH
403
4
HOH
HOH
403
B
HOH
404
4
HOH
HOH
404
B
HOH
405
4
HOH
HOH
405
B
HOH
406
4
HOH
HOH
406
B
HOH
409
4
HOH
HOH
409
B
HOH
411
4
HOH
HOH
411
B
HOH
414
4
HOH
HOH
414
B
HOH
415
4
HOH
HOH
415
B
HOH
416
4
HOH
HOH
416
B
HOH
417
4
HOH
HOH
417
B
HOH
418
4
HOH
HOH
418
B
HOH
419
4
HOH
HOH
419
B
HOH
420
4
HOH
HOH
420
B
HOH
421
4
HOH
HOH
421
B
HOH
422
4
HOH
HOH
422
B
HOH
423
4
HOH
HOH
423
B
HOH
424
4
HOH
HOH
424
B
HOH
425
4
HOH
HOH
425
B
HOH
438
4
HOH
HOH
438
B
HOH
439
4
HOH
HOH
439
B
HOH
440
4
HOH
HOH
440
B
HOH
441
4
HOH
HOH
441
B
HOH
442
4
HOH
HOH
442
B
HOH
443
4
HOH
HOH
443
B
HOH
444
4
HOH
HOH
444
B
HOH
445
4
HOH
HOH
445
B
HOH
446
4
HOH
HOH
446
B
HOH
447
4
HOH
HOH
447
B
HOH
448
4
HOH
HOH
448
B
HOH
449
4
HOH
HOH
449
B
HOH
451
4
HOH
HOH
451
B
HOH
456
4
HOH
HOH
456
B
HOH
457
4
HOH
HOH
457
B
HOH
460
4
HOH
HOH
460
B
HOH
461
4
HOH
HOH
461
B
VAL
1
n
1
VAL
1
A
LEU
2
n
2
LEU
2
A
ASP
3
n
3
ASP
3
A
SER
4
n
4
SER
4
A
PHE
5
n
5
PHE
5
A
GLU
6
n
6
GLU
6
A
ILE
7
n
7
ILE
7
A
LEU
8
n
8
LEU
8
A
LYS
9
n
9
LYS
9
A
ALA
10
n
10
ALA
10
A
LEU
11
n
11
LEU
11
A
LYS
12
n
12
LYS
12
A
SER
13
n
13
SER
13
A
LEU
14
n
14
LEU
14
A
ASP
15
n
15
ASP
15
A
LEU
16
n
16
LEU
16
A
LEU
17
n
17
LEU
17
A
LYS
18
n
18
LYS
18
A
ASN
19
n
19
ASN
19
A
ALA
20
n
20
ALA
20
A
PRO
21
n
21
PRO
21
A
ALA
22
n
22
ALA
22
A
TRP
23
n
23
TRP
23
A
TRP
24
n
24
TRP
24
A
TRP
25
n
25
TRP
25
A
PRO
26
n
26
PRO
26
A
ASN
27
n
27
ASN
27
A
ALA
28
n
28
ALA
28
A
LEU
29
n
29
LEU
29
A
LYS
30
n
30
LYS
30
A
PHE
31
n
31
PHE
31
A
GLU
32
n
32
GLU
32
A
ALA
33
n
33
ALA
33
A
LEU
34
n
34
LEU
34
A
LEU
35
n
35
LEU
35
A
GLY
36
n
36
GLY
36
A
ALA
37
n
37
ALA
37
A
VAL
38
n
38
VAL
38
A
LEU
39
n
39
LEU
39
A
THR
40
n
40
THR
40
A
GLN
41
n
41
GLN
41
A
ASN
42
n
42
ASN
42
A
THR
43
n
43
THR
43
A
LYS
44
n
44
LYS
44
A
PHE
45
n
45
PHE
45
A
GLU
46
n
46
GLU
46
A
ALA
47
n
47
ALA
47
A
VAL
48
n
48
VAL
48
A
LEU
49
n
49
LEU
49
A
LYS
50
n
50
LYS
50
A
SER
51
n
51
SER
51
A
LEU
52
n
52
LEU
52
A
GLU
53
n
53
GLU
53
A
ASN
54
n
54
ASN
54
A
LEU
55
n
55
LEU
55
A
LYS
56
n
56
LYS
56
A
ASN
57
n
57
ASN
57
A
ALA
58
n
58
ALA
58
A
PHE
59
n
59
PHE
59
A
ILE
60
n
60
ILE
60
A
LEU
61
n
61
LEU
61
A
GLU
62
n
62
GLU
62
A
ASN
63
n
63
ASN
63
A
ASP
64
n
64
ASP
64
A
ASP
65
n
65
ASP
65
A
GLU
66
n
66
GLU
66
A
ILE
67
n
67
ILE
67
A
ASN
68
n
68
ASN
68
A
LEU
69
n
69
LEU
69
A
LYS
70
n
70
LYS
70
A
LYS
71
n
71
LYS
71
A
ILE
72
n
72
ILE
72
A
ALA
73
n
73
ALA
73
A
TYR
74
n
74
TYR
74
A
ILE
75
n
75
ILE
75
A
GLU
76
n
76
GLU
76
A
PHE
77
n
77
PHE
77
A
SER
78
n
78
SER
78
A
LYS
79
n
79
LYS
79
A
LEU
80
n
80
LEU
80
A
ALA
81
n
81
ALA
81
A
GLU
82
n
82
GLU
82
A
CYS
83
n
83
CYS
83
A
VAL
84
n
84
VAL
84
A
ARG
85
n
85
ARG
85
A
PRO
86
n
86
PRO
86
A
SER
87
n
87
SER
87
A
GLY
88
n
88
GLY
88
A
PHE
89
n
89
PHE
89
A
TYR
90
n
90
TYR
90
A
ASN
91
n
91
ASN
91
A
GLN
92
n
92
GLN
92
A
LYS
93
n
93
LYS
93
A
ALA
94
n
94
ALA
94
A
LYS
95
n
95
LYS
95
A
ARG
96
n
96
ARG
96
A
LEU
97
n
97
LEU
97
A
ILE
98
n
98
ILE
98
A
ASP
99
n
99
ASP
99
A
LEU
100
n
100
LEU
100
A
SER
101
n
101
SER
101
A
GLY
102
n
102
GLY
102
A
ASN
103
n
103
ASN
103
A
ILE
104
n
104
ILE
104
A
LEU
105
n
105
LEU
105
A
LYS
106
n
106
LYS
106
A
ASP
107
n
107
ASP
107
A
PHE
108
n
108
PHE
108
A
GLN
109
n
109
GLN
109
A
SER
110
n
110
SER
110
A
PHE
111
n
111
PHE
111
A
GLU
112
n
112
GLU
112
A
ASN
113
n
113
ASN
113
A
PHE
114
n
114
PHE
114
A
LYS
115
n
115
LYS
115
A
GLN
116
n
116
GLN
116
A
GLU
117
n
117
GLU
117
A
VAL
118
n
118
VAL
118
A
THR
119
n
119
THR
119
A
ARG
120
n
120
ARG
120
A
GLU
121
n
121
GLU
121
A
TRP
122
n
122
TRP
122
A
LEU
123
n
123
LEU
123
A
LEU
124
n
124
LEU
124
A
ASP
125
n
125
ASP
125
A
GLN
126
n
126
GLN
126
A
LYS
127
n
127
LYS
127
A
GLY
128
n
128
GLY
128
A
ILE
129
n
129
ILE
129
A
GLY
130
n
130
GLY
130
A
LYS
131
n
131
LYS
131
A
GLU
132
n
132
GLU
132
A
SER
133
n
133
SER
133
A
ALA
134
n
134
ALA
134
A
ASP
135
n
135
ASP
135
A
ALA
136
n
136
ALA
136
A
ILE
137
n
137
ILE
137
A
LEU
138
n
138
LEU
138
A
CYS
139
n
139
CYS
139
A
TYR
140
n
140
TYR
140
A
ALA
141
n
141
ALA
141
A
CYS
142
n
142
CYS
142
A
ALA
143
n
143
ALA
143
A
LYS
144
n
144
LYS
144
A
GLU
145
n
145
GLU
145
A
VAL
146
n
146
VAL
146
A
MET
147
n
147
MET
147
A
VAL
148
n
148
VAL
148
A
VAL
149
n
149
VAL
149
A
ASP
150
n
150
ASP
150
A
LYS
151
n
151
LYS
151
A
TYR
152
n
152
TYR
152
A
SER
153
n
153
SER
153
A
TYR
154
n
154
TYR
154
A
LEU
155
n
155
LEU
155
A
PHE
156
n
156
PHE
156
A
LEU
157
n
157
LEU
157
A
LYS
158
n
158
LYS
158
A
LYS
159
n
159
LYS
159
A
LEU
160
n
160
LEU
160
A
GLY
161
n
161
GLY
161
A
ILE
162
n
162
ILE
162
A
GLU
163
n
163
GLU
163
A
ILE
164
n
164
ILE
164
A
GLU
165
n
165
GLU
165
A
ASP
166
n
166
ASP
166
A
TYR
167
n
167
TYR
167
A
ASP
168
n
168
ASP
168
A
GLU
169
n
169
GLU
169
A
LEU
170
n
170
LEU
170
A
GLN
171
n
171
GLN
171
A
HIS
172
n
172
HIS
172
A
PHE
173
n
173
PHE
173
A
PHE
174
n
174
PHE
174
A
GLU
175
n
175
GLU
175
A
LYS
176
n
176
LYS
176
A
GLY
177
n
177
GLY
177
A
VAL
178
n
178
VAL
178
A
GLN
179
n
179
GLN
179
A
GLU
180
n
180
GLU
180
A
ASN
181
n
181
ASN
181
A
LEU
182
n
182
LEU
182
A
ASN
183
n
183
ASN
183
A
SER
184
n
184
SER
184
A
ALA
185
n
185
ALA
185
A
LEU
186
n
186
LEU
186
A
ALA
187
n
187
ALA
187
A
LEU
188
n
188
LEU
188
A
TYR
189
n
189
TYR
189
A
GLU
190
n
190
GLU
190
A
ASN
191
n
191
ASN
191
A
THR
192
n
192
THR
192
A
ILE
193
n
193
ILE
193
A
SER
194
n
194
SER
194
A
LEU
195
n
195
LEU
195
A
ALA
196
n
196
ALA
196
A
GLN
197
n
197
GLN
197
A
LEU
198
n
198
LEU
198
A
TYR
199
n
199
TYR
199
A
ALA
200
n
200
ALA
200
A
ARG
201
n
201
ARG
201
A
PHE
202
n
202
PHE
202
A
HIS
203
n
203
HIS
203
A
GLY
204
n
204
GLY
204
A
KCX
205
n
205
KCX
205
A
ILE
206
n
206
ILE
206
A
VAL
207
n
207
VAL
207
A
GLU
208
n
208
GLU
208
A
PHE
209
n
209
PHE
209
A
SER
210
n
210
SER
210
A
LYS
211
n
211
LYS
211
A
GLN
212
n
212
GLN
212
A
LYS
213
n
213
LYS
213
A
LEU
214
n
214
LEU
214
A
GLU
215
n
215
GLU
215
A
LEU
216
n
216
LEU
216
A
n
217
217
A
n
218
218
A
n
1
1
B
LEU
2
n
2
LEU
2
B
ASP
3
n
3
ASP
3
B
SER
4
n
4
SER
4
B
PHE
5
n
5
PHE
5
B
GLU
6
n
6
GLU
6
B
ILE
7
n
7
ILE
7
B
LEU
8
n
8
LEU
8
B
LYS
9
n
9
LYS
9
B
ALA
10
n
10
ALA
10
B
LEU
11
n
11
LEU
11
B
LYS
12
n
12
LYS
12
B
SER
13
n
13
SER
13
B
LEU
14
n
14
LEU
14
B
ASP
15
n
15
ASP
15
B
LEU
16
n
16
LEU
16
B
LEU
17
n
17
LEU
17
B
LYS
18
n
18
LYS
18
B
ASN
19
n
19
ASN
19
B
ALA
20
n
20
ALA
20
B
PRO
21
n
21
PRO
21
B
ALA
22
n
22
ALA
22
B
TRP
23
n
23
TRP
23
B
TRP
24
n
24
TRP
24
B
TRP
25
n
25
TRP
25
B
PRO
26
n
26
PRO
26
B
ASN
27
n
27
ASN
27
B
ALA
28
n
28
ALA
28
B
LEU
29
n
29
LEU
29
B
LYS
30
n
30
LYS
30
B
PHE
31
n
31
PHE
31
B
GLU
32
n
32
GLU
32
B
ALA
33
n
33
ALA
33
B
LEU
34
n
34
LEU
34
B
LEU
35
n
35
LEU
35
B
GLY
36
n
36
GLY
36
B
ALA
37
n
37
ALA
37
B
VAL
38
n
38
VAL
38
B
LEU
39
n
39
LEU
39
B
THR
40
n
40
THR
40
B
GLN
41
n
41
GLN
41
B
ASN
42
n
42
ASN
42
B
THR
43
n
43
THR
43
B
LYS
44
n
44
LYS
44
B
PHE
45
n
45
PHE
45
B
GLU
46
n
46
GLU
46
B
ALA
47
n
47
ALA
47
B
VAL
48
n
48
VAL
48
B
LEU
49
n
49
LEU
49
B
LYS
50
n
50
LYS
50
B
SER
51
n
51
SER
51
B
LEU
52
n
52
LEU
52
B
GLU
53
n
53
GLU
53
B
ASN
54
n
54
ASN
54
B
LEU
55
n
55
LEU
55
B
LYS
56
n
56
LYS
56
B
ASN
57
n
57
ASN
57
B
ALA
58
n
58
ALA
58
B
PHE
59
n
59
PHE
59
B
ILE
60
n
60
ILE
60
B
LEU
61
n
61
LEU
61
B
GLU
62
n
62
GLU
62
B
ASN
63
n
63
ASN
63
B
ASP
64
n
64
ASP
64
B
ASP
65
n
65
ASP
65
B
GLU
66
n
66
GLU
66
B
ILE
67
n
67
ILE
67
B
ASN
68
n
68
ASN
68
B
LEU
69
n
69
LEU
69
B
LYS
70
n
70
LYS
70
B
LYS
71
n
71
LYS
71
B
ILE
72
n
72
ILE
72
B
ALA
73
n
73
ALA
73
B
TYR
74
n
74
TYR
74
B
ILE
75
n
75
ILE
75
B
GLU
76
n
76
GLU
76
B
PHE
77
n
77
PHE
77
B
SER
78
n
78
SER
78
B
LYS
79
n
79
LYS
79
B
LEU
80
n
80
LEU
80
B
ALA
81
n
81
ALA
81
B
GLU
82
n
82
GLU
82
B
CYS
83
n
83
CYS
83
B
VAL
84
n
84
VAL
84
B
ARG
85
n
85
ARG
85
B
PRO
86
n
86
PRO
86
B
SER
87
n
87
SER
87
B
GLY
88
n
88
GLY
88
B
PHE
89
n
89
PHE
89
B
TYR
90
n
90
TYR
90
B
ASN
91
n
91
ASN
91
B
GLN
92
n
92
GLN
92
B
LYS
93
n
93
LYS
93
B
ALA
94
n
94
ALA
94
B
LYS
95
n
95
LYS
95
B
ARG
96
n
96
ARG
96
B
LEU
97
n
97
LEU
97
B
ILE
98
n
98
ILE
98
B
ASP
99
n
99
ASP
99
B
LEU
100
n
100
LEU
100
B
SER
101
n
101
SER
101
B
GLY
102
n
102
GLY
102
B
ASN
103
n
103
ASN
103
B
ILE
104
n
104
ILE
104
B
LEU
105
n
105
LEU
105
B
LYS
106
n
106
LYS
106
B
ASP
107
n
107
ASP
107
B
PHE
108
n
108
PHE
108
B
GLN
109
n
109
GLN
109
B
SER
110
n
110
SER
110
B
PHE
111
n
111
PHE
111
B
GLU
112
n
112
GLU
112
B
ASN
113
n
113
ASN
113
B
PHE
114
n
114
PHE
114
B
LYS
115
n
115
LYS
115
B
GLN
116
n
116
GLN
116
B
GLU
117
n
117
GLU
117
B
VAL
118
n
118
VAL
118
B
THR
119
n
119
THR
119
B
ARG
120
n
120
ARG
120
B
GLU
121
n
121
GLU
121
B
TRP
122
n
122
TRP
122
B
LEU
123
n
123
LEU
123
B
LEU
124
n
124
LEU
124
B
ASP
125
n
125
ASP
125
B
GLN
126
n
126
GLN
126
B
LYS
127
n
127
LYS
127
B
GLY
128
n
128
GLY
128
B
ILE
129
n
129
ILE
129
B
GLY
130
n
130
GLY
130
B
LYS
131
n
131
LYS
131
B
GLU
132
n
132
GLU
132
B
SER
133
n
133
SER
133
B
ALA
134
n
134
ALA
134
B
ASP
135
n
135
ASP
135
B
ALA
136
n
136
ALA
136
B
ILE
137
n
137
ILE
137
B
LEU
138
n
138
LEU
138
B
CYS
139
n
139
CYS
139
B
TYR
140
n
140
TYR
140
B
ALA
141
n
141
ALA
141
B
CYS
142
n
142
CYS
142
B
ALA
143
n
143
ALA
143
B
LYS
144
n
144
LYS
144
B
GLU
145
n
145
GLU
145
B
VAL
146
n
146
VAL
146
B
MET
147
n
147
MET
147
B
VAL
148
n
148
VAL
148
B
VAL
149
n
149
VAL
149
B
ASP
150
n
150
ASP
150
B
LYS
151
n
151
LYS
151
B
TYR
152
n
152
TYR
152
B
SER
153
n
153
SER
153
B
TYR
154
n
154
TYR
154
B
LEU
155
n
155
LEU
155
B
PHE
156
n
156
PHE
156
B
LEU
157
n
157
LEU
157
B
LYS
158
n
158
LYS
158
B
LYS
159
n
159
LYS
159
B
LEU
160
n
160
LEU
160
B
GLY
161
n
161
GLY
161
B
ILE
162
n
162
ILE
162
B
GLU
163
n
163
GLU
163
B
ILE
164
n
164
ILE
164
B
GLU
165
n
165
GLU
165
B
ASP
166
n
166
ASP
166
B
TYR
167
n
167
TYR
167
B
ASP
168
n
168
ASP
168
B
GLU
169
n
169
GLU
169
B
LEU
170
n
170
LEU
170
B
GLN
171
n
171
GLN
171
B
HIS
172
n
172
HIS
172
B
PHE
173
n
173
PHE
173
B
PHE
174
n
174
PHE
174
B
GLU
175
n
175
GLU
175
B
LYS
176
n
176
LYS
176
B
GLY
177
n
177
GLY
177
B
VAL
178
n
178
VAL
178
B
GLN
179
n
179
GLN
179
B
GLU
180
n
180
GLU
180
B
ASN
181
n
181
ASN
181
B
LEU
182
n
182
LEU
182
B
ASN
183
n
183
ASN
183
B
SER
184
n
184
SER
184
B
ALA
185
n
185
ALA
185
B
LEU
186
n
186
LEU
186
B
ALA
187
n
187
ALA
187
B
LEU
188
n
188
LEU
188
B
TYR
189
n
189
TYR
189
B
GLU
190
n
190
GLU
190
B
ASN
191
n
191
ASN
191
B
THR
192
n
192
THR
192
B
ILE
193
n
193
ILE
193
B
SER
194
n
194
SER
194
B
LEU
195
n
195
LEU
195
B
ALA
196
n
196
ALA
196
B
GLN
197
n
197
GLN
197
B
LEU
198
n
198
LEU
198
B
TYR
199
n
199
TYR
199
B
ALA
200
n
200
ALA
200
B
ARG
201
n
201
ARG
201
B
PHE
202
n
202
PHE
202
B
HIS
203
n
203
HIS
203
B
GLY
204
n
204
GLY
204
B
KCX
205
n
205
KCX
205
B
ILE
206
n
206
ILE
206
B
VAL
207
n
207
VAL
207
B
GLU
208
n
208
GLU
208
B
PHE
209
n
209
PHE
209
B
SER
210
n
210
SER
210
B
LYS
211
n
211
LYS
211
B
GLN
212
n
212
GLN
212
B
LYS
213
n
213
LYS
213
B
LEU
214
n
214
LEU
214
B
GLU
215
n
215
GLU
215
B
LEU
216
n
216
LEU
216
B
n
217
217
B
n
218
218
B
2.6111
-0.1287
-0.0702
1.7178
0.2670
4.0394
-0.0990
-0.1559
-0.1248
0.0830
0.0621
-0.0835
0.1550
0.3385
0.0370
0.0949
0.0408
-0.0169
0.1116
-0.0066
0.1099
refined
118.5179
18.9889
56.5131
X-RAY DIFFRACTION
1.5163
0.1522
0.4716
1.9506
0.6978
2.0552
0.0034
0.0943
-0.0851
-0.0550
0.0556
-0.0878
0.0358
0.1153
-0.0589
0.1040
-0.0097
0.0126
0.1188
0.0034
0.1034
refined
109.7365
12.6494
35.0295
X-RAY DIFFRACTION
2.4036
-0.4711
0.1536
2.4202
0.1347
3.0448
-0.0596
-0.2075
-0.0456
0.2241
0.1013
-0.1483
0.0734
0.4200
-0.0417
0.0691
0.0282
-0.0302
0.1706
-0.0125
0.0955
refined
131.7845
41.2303
14.5073
X-RAY DIFFRACTION
0.9975
0.0598
0.0599
1.5633
0.5582
1.6818
0.0096
0.0211
-0.0234
-0.0721
0.0461
-0.0914
0.0164
0.0494
-0.0557
0.1008
-0.0048
0.0055
0.1242
0.0031
0.1363
refined
120.4862
35.8708
-5.8712
X-RAY DIFFRACTION
0.0689
0.0126
-0.0781
0.0608
-0.1862
0.4372
-0.0160
0.0339
-0.0234
0.0065
0.0084
-0.0209
0.0579
0.0147
0.0076
0.0399
-0.0120
-0.0050
0.0142
-0.0232
0.0583
refined
115.7105
26.5796
18.9764
X-RAY DIFFRACTION
A
2
A
24
X-RAY DIFFRACTION
1
A
145
A
216
X-RAY DIFFRACTION
1
A
25
A
144
X-RAY DIFFRACTION
2
A
983
A
983
X-RAY DIFFRACTION
2
A
219
A
219
X-RAY DIFFRACTION
2
B
2
B
24
X-RAY DIFFRACTION
3
B
145
B
216
X-RAY DIFFRACTION
3
B
25
B
144
X-RAY DIFFRACTION
4
B
983
B
983
X-RAY DIFFRACTION
4
B
220
B
220
X-RAY DIFFRACTION
4
A
301
A
459
X-RAY DIFFRACTION
5
B
303
B
461
X-RAY DIFFRACTION
5
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
A
KCX
205
LYSINE NZ-CARBOXYLIC ACID
A
KCX
205
LYS
B
KCX
205
LYSINE NZ-CARBOXYLIC ACID
B
KCX
205
LYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
N
VAL
1
A
N
VAL
1
1
Y
1
A
CA
VAL
1
A
CA
VAL
1
1
Y
1
A
CB
VAL
1
A
CB
VAL
1
1
Y
1
A
CG1
VAL
1
A
CG1
VAL
1
1
Y
1
A
CG2
VAL
1
A
CG2
VAL
1
1
Y
1
A
CG
LYS
18
A
CG
LYS
18
1
Y
1
A
CD
LYS
18
A
CD
LYS
18
1
Y
1
A
CE
LYS
18
A
CE
LYS
18
1
Y
1
A
NZ
LYS
18
A
NZ
LYS
18
1
Y
1
A
CE
LYS
30
A
CE
LYS
30
1
Y
1
A
NZ
LYS
30
A
NZ
LYS
30
1
Y
1
A
CD
LYS
44
A
CD
LYS
44
1
Y
1
A
CE
LYS
44
A
CE
LYS
44
1
Y
1
A
NZ
LYS
44
A
NZ
LYS
44
1
Y
1
A
CD
LYS
50
A
CD
LYS
50
1
Y
1
A
CE
LYS
50
A
CE
LYS
50
1
Y
1
A
NZ
LYS
50
A
NZ
LYS
50
1
Y
1
A
NZ
LYS
71
A
NZ
LYS
71
1
Y
1
A
OE1
GLU
76
A
OE1
GLU
76
1
Y
1
A
OE2
GLU
76
A
OE2
GLU
76
1
Y
1
A
CE
LYS
106
A
CE
LYS
106
1
Y
1
A
NZ
LYS
106
A
NZ
LYS
106
1
Y
1
A
CD
LYS
151
A
CD
LYS
151
1
Y
1
A
CE
LYS
151
A
CE
LYS
151
1
Y
1
A
NZ
LYS
151
A
NZ
LYS
151
1
Y
1
A
CD
LYS
159
A
CD
LYS
159
1
Y
1
A
CE
LYS
159
A
CE
LYS
159
1
Y
1
A
NZ
LYS
159
A
NZ
LYS
159
1
Y
1
B
CG
LYS
44
B
CG
LYS
44
1
Y
1
B
CD
LYS
44
B
CD
LYS
44
1
Y
1
B
CE
LYS
44
B
CE
LYS
44
1
Y
1
B
NZ
LYS
44
B
NZ
LYS
44
1
Y
1
B
OE1
GLU
76
B
OE1
GLU
76
1
Y
1
B
OE2
GLU
76
B
OE2
GLU
76
1
Y
1
B
NZ
LYS
106
B
NZ
LYS
106
1
Y
1
B
CD
LYS
127
B
CD
LYS
127
1
Y
1
B
CE
LYS
127
B
CE
LYS
127
1
Y
1
B
NZ
LYS
127
B
NZ
LYS
127
1
Y
1
B
CD
LYS
159
B
CD
LYS
159
1
Y
1
B
CE
LYS
159
B
CE
LYS
159
1
Y
1
B
NZ
LYS
159
B
NZ
LYS
159
1
Y
1
B
CG
GLU
165
B
CG
GLU
165
1
Y
1
B
CD
GLU
165
B
CD
GLU
165
1
Y
1
B
OE1
GLU
165
B
OE1
GLU
165
1
Y
1
B
OE2
GLU
165
B
OE2
GLU
165
1
Y
1
B
CG
GLU
190
B
CG
GLU
190
1
Y
1
B
CD
GLU
190
B
CD
GLU
190
1
Y
1
B
OE1
GLU
190
B
OE1
GLU
190
1
Y
1
B
OE2
GLU
190
B
OE2
GLU
190
1
Y
1
B
CG
ASN
191
B
CG
ASN
191
1
Y
1
B
OD1
ASN
191
B
OD1
ASN
191
1
Y
1
B
ND2
ASN
191
B
ND2
ASN
191
1
Y
1
A
LYS
217
A
LYS
217
1
Y
1
A
LEU
218
A
LEU
218
1
Y
1
B
VAL
1
B
VAL
1
1
Y
1
B
LYS
217
B
LYS
217
1
Y
1
B
LEU
218
B
LEU
218
1
Y
1
6.16
0.90
118.30
124.46
A
A
A
CB
CG
OD2
ASP
ASP
ASP
64
64
64
N
1
5.44
0.90
118.30
123.74
A
A
A
CB
CG
OD2
ASP
ASP
ASP
166
166
166
N
1
6.88
0.90
118.30
125.18
A
A
A
CB
CG
OD2
ASP
ASP
ASP
168
168
168
N
1
5.55
0.90
118.30
123.85
B
B
B
CB
CG
OD2
ASP
ASP
ASP
125
125
125
N
1
A
TRP
24
71.05
-60.50
1
A
ALA
28
-48.56
151.26
1
A
GLU
62
-124.80
-145.69
1
A
GLN
109
67.15
-32.55
1
A
TYR
189
-100.42
-93.31
1
A
GLU
190
-154.29
-6.26
1
B
TRP
24
68.23
-59.22
1
B
GLU
62
-125.55
-151.08
1
B
GLN
109
71.63
-33.32
1
B
ASP
150
-176.93
-175.77
13.758
-0.06
0.00
-0.44
0.37
0.00
-0.56
0.932
0.912
0.22992
0.20228
0.20369
0.20369
2.13
50.00
1434
26792
26792
5.1
98.19
5.092
0.130
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0
MOLECULAR REPLACEMENT
0.242
0.185
0.80
0.80
1.40
PDB ENTRY 1PU6
MAXIMUM LIKELIHOOD WITH PHASES
MASK
2.13
50.00
161
3660
32
0
3467
0.013
0.022
3571
1.508
1.974
4814
5.211
5.000
428
0.092
0.200
532
0.005
0.020
2652
0.214
0.200
1826
0.121
0.200
207
0.241
0.200
61
0.156
0.200
13
0.627
1.500
2140
1.162
2.000
3415
2.032
3.000
1431
3.052
4.500
1399
0.284
0.264
2.180
77
1524
20
23.0
2.13
50
1PU8
28226
28226
0
0
0.084
1
11.5
2.9
99.8
2.13
2.23
2.5
2783
0.369
1
2.9
99.6
refinement
REFMAC
5.1.19
data reduction
DENZO
data scaling
SCALEPACK
Crystal structure of H.pylori 3-methyladenine DNA glycosylase (MagIII) bound to 1,N6-ethenoadenine
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
ASP
3
A
ASP
3
HELX_P
A
SER
13
A
SER
13
1
1
11
A
LYS
30
A
LYS
30
HELX_P
A
THR
40
A
THR
40
1
2
11
A
LYS
44
A
LYS
44
HELX_P
A
ALA
58
A
ALA
58
1
3
15
A
ASP
64
A
ASP
64
HELX_P
A
ILE
75
A
ILE
75
1
4
12
A
GLU
76
A
GLU
76
HELX_P
A
VAL
84
A
VAL
84
1
5
9
A
ARG
85
A
ARG
85
HELX_P
A
GLY
88
A
GLY
88
5
6
4
A
PHE
89
A
PHE
89
HELX_P
A
GLN
109
A
GLN
109
1
7
21
A
SER
110
A
SER
110
HELX_P
A
VAL
118
A
VAL
118
1
8
9
A
THR
119
A
THR
119
HELX_P
A
ASP
125
A
ASP
125
1
9
7
A
GLY
130
A
GLY
130
HELX_P
A
ALA
141
A
ALA
141
1
10
12
A
ASP
150
A
ASP
150
HELX_P
A
LEU
160
A
LEU
160
1
11
11
A
ASP
166
A
ASP
166
HELX_P
A
ASN
181
A
ASN
181
1
12
16
A
ASN
181
A
ASN
181
HELX_P
A
ALA
187
A
ALA
187
1
13
7
A
SER
194
A
SER
194
HELX_P
A
LYS
213
A
LYS
213
1
14
20
B
ASP
3
B
ASP
3
HELX_P
B
SER
13
B
SER
13
1
15
11
B
LYS
30
B
LYS
30
HELX_P
B
THR
40
B
THR
40
1
16
11
B
LYS
44
B
LYS
44
HELX_P
B
ALA
58
B
ALA
58
1
17
15
B
ASP
64
B
ASP
64
HELX_P
B
ILE
75
B
ILE
75
1
18
12
B
GLU
76
B
GLU
76
HELX_P
B
VAL
84
B
VAL
84
1
19
9
B
ARG
85
B
ARG
85
HELX_P
B
GLY
88
B
GLY
88
5
20
4
B
PHE
89
B
PHE
89
HELX_P
B
GLN
109
B
GLN
109
1
21
21
B
SER
110
B
SER
110
HELX_P
B
VAL
118
B
VAL
118
1
22
9
B
THR
119
B
THR
119
HELX_P
B
ASP
125
B
ASP
125
1
23
7
B
GLY
130
B
GLY
130
HELX_P
B
ALA
141
B
ALA
141
1
24
12
B
ASP
150
B
ASP
150
HELX_P
B
LEU
160
B
LEU
160
1
25
11
B
ASP
166
B
ASP
166
HELX_P
B
GLU
180
B
GLU
180
1
26
15
B
ASN
181
B
ASN
181
HELX_P
B
LEU
188
B
LEU
188
1
27
8
B
SER
194
B
SER
194
HELX_P
B
GLN
212
B
GLN
212
1
28
19
covale
2.025
none
A
CYS
83
A
SG
CYS
83
1_555
A
BME
983
D
S2
BME
1_555
covale
1.326
both
A
GLY
204
A
C
GLY
204
1_555
A
KCX
205
A
N
KCX
205
1_555
covale
1.330
both
A
KCX
205
A
C
KCX
205
1_555
A
ILE
206
A
N
ILE
206
1_555
covale
2.029
none
B
CYS
83
B
SG
CYS
83
1_555
B
BME
983
F
S2
BME
1_555
covale
1.326
both
B
GLY
204
B
C
GLY
204
1_555
B
KCX
205
B
N
KCX
205
1_555
covale
1.333
both
B
KCX
205
B
C
KCX
205
1_555
B
ILE
206
B
N
ILE
206
1_555
HYDROLASE
Helix-hairpin-helix, 3-Methyladenine, BASE EXCISION REPAIR, GLYCOSYLASE, HYDROLASE
O25323_HELPY
UNP
1
1
O25323
MLDSFEILKALKSLDLLKNAPAWWWPNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKL
AECVRPSGFYNQKAKRLIDLSKNILKDFQSFENFKQEVTKEWLLDQKGIGKESADAILCYVCAKEVMVVDKYSYLFLKKL
GIEIEDYDELQHFFEKGVQENLNSALALYENTISLAQLYARFHGKIVEFSKQKLELKL
1
218
1PU8
1
218
O25323
A
1
1
218
1
218
1PU8
1
218
O25323
B
1
1
218
1
MET
SEE REMARK 999
VAL
1
1PU8
A
O25323
UNP
1
1
1
LYS
SEE REMARK 999
GLY
102
1PU8
A
O25323
UNP
102
102
1
LYS
SEE REMARK 999
ARG
120
1PU8
A
O25323
UNP
120
120
1
VAL
SEE REMARK 999
ALA
141
1PU8
A
O25323
UNP
141
141
1
LYS
modified residue
KCX
205
1PU8
A
O25323
UNP
205
205
2
MET
SEE REMARK 999
VAL
1
1PU8
B
O25323
UNP
1
1
2
LYS
SEE REMARK 999
GLY
102
1PU8
B
O25323
UNP
102
102
2
LYS
SEE REMARK 999
ARG
120
1PU8
B
O25323
UNP
120
120
2
VAL
SEE REMARK 999
ALA
141
1PU8
B
O25323
UNP
141
141
2
LYS
modified residue
KCX
205
1PU8
B
O25323
UNP
205
205
BINDING SITE FOR RESIDUE EA1 A 219
A
EA1
219
Software
7
BINDING SITE FOR RESIDUE EA1 B 220
B
EA1
220
Software
7
BINDING SITE FOR RESIDUE BME A 983
A
BME
983
Software
3
BINDING SITE FOR RESIDUE BME B 983
B
BME
983
Software
4
A
TRP
24
A
TRP
24
7
1_555
A
TRP
25
A
TRP
25
7
1_555
A
PRO
26
A
PRO
26
7
1_555
A
PHE
45
A
PHE
45
7
1_555
A
GLU
208
A
GLU
208
7
1_555
A
LYS
211
A
LYS
211
7
1_555
A
HOH
353
G
HOH
7
1_555
B
TRP
24
B
TRP
24
7
1_555
B
TRP
25
B
TRP
25
7
1_555
B
PRO
26
B
PRO
26
7
1_555
B
THR
40
B
THR
40
7
1_555
B
PHE
45
B
PHE
45
7
1_555
B
LYS
211
B
LYS
211
7
1_555
B
HOH
342
H
HOH
7
1_555
A
ASN
54
A
ASN
54
3
1_555
A
ALA
58
A
ALA
58
3
1_555
A
CYS
83
A
CYS
83
3
1_555
A
GLU
169
A
GLU
169
4
1_554
B
ASN
54
B
ASN
54
4
1_555
B
ALA
58
B
ALA
58
4
1_555
B
CYS
83
B
CYS
83
4
1_555
5
C 1 2 1