0.016456
0.000000
0.000000
0.000000
0.008707
0.000000
0.000000
0.000000
0.009245
0.00000
0.00000
0.00000
Laronde-Leblanc, N.A.
Wolberger, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
60.769
114.853
108.170
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
N
Y
287
N
C
Y
288
N
C
Y
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
S
C
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
N
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
S
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
N
421
N
C
N
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
N
438
N
O
N
439
N
O
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
N
N
448
S
C
N
449
N
C
N
450
N
O
N
451
R
C
N
452
N
O
N
453
N
C
N
454
N
O
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
N
N
465
S
C
N
466
N
C
N
467
N
O
N
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
Y
472
N
N
Y
473
N
C
Y
474
N
C
Y
475
N
C
Y
476
N
C
Y
477
N
C
N
478
N
O
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
N
N
492
S
C
N
493
N
C
N
494
N
O
N
495
N
C
Y
496
N
C
Y
497
N
C
Y
498
N
C
Y
499
N
C
Y
500
N
C
Y
501
N
C
N
502
N
O
N
503
N
O
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
N
N
516
S
C
N
517
N
C
N
518
N
O
N
519
N
C
N
520
N
C
N
521
N
C
N
522
N
O
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
Y
397
N
doub
Y
398
N
sing
Y
399
N
sing
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
doub
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
doub
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
Y
466
N
doub
Y
467
N
sing
Y
468
N
sing
N
469
N
sing
Y
470
N
doub
Y
471
N
sing
Y
472
N
sing
N
473
N
sing
Y
474
N
sing
Y
475
N
doub
N
476
N
sing
Y
477
N
doub
N
478
N
sing
Y
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
doub
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
Y
494
N
doub
Y
495
N
sing
Y
496
N
sing
N
497
N
sing
Y
498
N
doub
N
499
N
sing
Y
500
N
doub
N
501
N
sing
Y
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
doub
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
US
Genes Dev.
GEDEEP
2056
0890-9369
17
2060
2072
10.1101/gad.1103303
12923056
STRUCTURE OF HOXA9 AND PBX1 BOUND TO DNA: HOX HEXAPEPTIDE AND DNA RECOGNITION ANTERIOR TO POSTERIOR
2003
10.2210/pdb1puf/pdb
pdb_00001puf
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
2000-09-27
ADSC QUANTUM 4
SI(111)
SINGLE WAVELENGTH
M
x-ray
1
0.9116
1.0
X4A
NSLS
0.9116
SYNCHROTRON
NSLS BEAMLINE X4A
6083.953
5'-D(*AP*CP*TP*CP*TP*AP*TP*GP*AP*TP*TP*TP*AP*CP*GP*AP*CP*GP*CP*T)-3'
1
syn
polymer
6182.029
5'-D(*TP*AP*GP*CP*GP*TP*CP*GP*TP*AP*AP*AP*TP*CP*AP*TP*AP*GP*AP*G)-3'
1
syn
polymer
Homeodomain
9646.336
Homeobox protein Hox-A9
residues 193-269
1
man
polymer
Homeodomain
8747.872
Pre-B-cell leukemia transcription factor-1
residues 233-305
1
man
polymer
18.015
water
247
nat
water
Hox-1.7
Homeobox protein PBX1, Homeobox protein PRL
no
no
(DA)(DC)(DT)(DC)(DT)(DA)(DT)(DG)(DA)(DT)(DT)(DT)(DA)(DC)(DG)(DA)(DC)(DG)(DC)(DT)
ACTCTATGATTTACGACGCT
D
polydeoxyribonucleotide
no
no
(DT)(DA)(DG)(DC)(DG)(DT)(DC)(DG)(DT)(DA)(DA)(DA)(DT)(DC)(DA)(DT)(DA)(DG)(DA)(DG)
TAGCGTCGTAAATCATAGAG
E
polydeoxyribonucleotide
no
no
NNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAK
NNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAK
A
polypeptide(L)
no
no
ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEEANIY
ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEEANIY
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
sample
HOXA9
10090
Mus musculus
562
Escherichia coli
Bl21(DE3) Codon + -RIL
PLASMID
pET28a+
human
Homo
Escherichia
Escherichia coli
sample
PBX1
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
Bl21(DE3)
PLASMID
pET11d
1
3.03
59.45
7.50
PEG 4000, hepes, cobaltic hexamine, dithiothrietol, EDTA, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K, pH 7.50
292
PEG 4000
1
hepes
1
cobaltic hexamine
1
dithiothrietol
1
EDTA
1
H2O
1
PEG 4000
2
hepes
2
cobaltic hexamine
2
EDTA
2
dithiothrietol
2
H2O
2
4.192
1
19
D
2
E
40
-4.204
D_DC2:DG40_E
1
-10.210
-0.056
0.160
-0.472
5.641
1
20
D
3
E
39
-8.823
D_DT3:DA39_E
2
-18.984
-0.641
0.204
-0.364
0.635
1
19
D
4
E
38
6.655
D_DC4:DG38_E
3
-10.437
-0.178
0.145
-0.126
5.149
1
20
D
5
E
37
4.325
D_DT5:DA37_E
4
-20.058
0.366
0.175
0.002
-8.973
1
20
D
6
E
36
2.061
D_DA6:DT36_E
5
-4.865
0.030
-0.095
0.039
5.059
1
20
D
7
E
35
3.652
D_DT7:DA35_E
6
-6.542
-0.171
0.052
-0.064
2.110
1
19
D
8
E
34
2.324
D_DG8:DC34_E
7
-11.498
-0.334
-0.077
-0.125
-5.569
1
20
D
9
E
33
6.732
D_DA9:DT33_E
8
-12.176
0.116
-0.053
-0.050
-9.162
1
20
D
10
E
32
0.304
D_DT10:DA32_E
9
-18.328
0.006
0.214
-0.103
-14.312
1
20
D
11
E
31
2.277
D_DT11:DA31_E
10
-21.587
-0.048
0.266
-0.056
-11.304
1
20
D
12
E
30
5.241
D_DT12:DA30_E
11
-14.841
0.075
-0.079
-0.167
-4.081
1
20
D
13
E
29
0.109
D_DA13:DT29_E
12
-7.698
-0.093
0.190
-0.105
3.252
1
19
D
14
E
28
-1.677
D_DC14:DG28_E
13
-10.130
0.373
0.040
-0.234
7.386
1
19
D
15
E
27
-2.195
D_DG15:DC27_E
14
-6.979
-0.158
0.130
-0.233
6.908
1
20
D
16
E
26
-3.116
D_DA16:DT26_E
15
-9.471
0.224
-0.048
0.005
15.514
1
19
D
17
E
25
0.756
D_DC17:DG25_E
16
-18.598
0.182
-0.073
-0.009
-19.457
1
19
D
18
E
24
-3.375
D_DG18:DC24_E
17
-11.262
-0.266
-0.264
-0.165
-10.331
1
19
D
19
E
23
-3.803
D_DC19:DG23_E
18
0.849
-0.068
0.054
-0.200
0.938
1
20
D
20
E
22
3.109
D_DT20:DA22_E
19
0.814
0.483
0.002
0.147
3.173
30.792
D
D
2
3
7.215
E
E
40
39
3.192
3.822
-0.349
0.014
DD_DC2DT3:DA39DG40_EE
1
-0.309
0.584
30.558
-0.702
0.598
3.489
43.131
D
D
3
4
1.874
E
E
39
38
3.393
1.375
0.963
0.445
DD_DT3DC4:DG38DA39_EE
2
4.855
-6.618
42.848
0.462
-0.806
3.246
31.637
D
D
4
5
5.618
E
E
38
37
3.250
3.056
-0.379
0.490
DD_DC4DT5:DA37DG38_EE
3
2.374
-4.365
31.406
0.335
1.133
3.371
49.641
D
D
5
6
-6.598
E
E
37
36
3.549
-5.529
0.139
1.525
DD_DT5DA6:DT36DA37_EE
4
0.561
-0.670
49.349
2.248
-0.122
3.090
24.582
D
D
6
7
1.611
E
E
36
35
3.087
0.686
-0.136
0.058
DD_DA6DT7:DA35DT36_EE
5
-1.124
2.641
24.547
-0.063
-0.007
3.385
38.012
D
D
7
8
13.126
E
E
35
34
3.332
8.479
-0.321
0.554
DD_DT7DG8:DC34DA35_EE
6
-1.907
2.953
37.041
-0.273
0.240
3.422
39.712
D
D
8
9
2.754
E
E
34
33
3.450
1.870
0.124
-0.587
DD_DG8DA9:DT33DC34_EE
7
0.603
-0.888
39.665
-1.093
-0.109
3.422
33.742
D
D
9
10
-1.370
E
E
33
32
3.349
-0.793
-0.716
-0.701
DD_DA9DT10:DA32DT33_EE
8
-3.830
6.612
33.521
-1.074
0.588
3.299
36.673
D
D
10
11
0.428
E
E
32
31
3.299
0.269
-0.129
-0.141
DD_DT10DT11:DA31DA32_EE
9
-0.785
1.248
36.664
-0.261
0.097
3.116
34.953
D
D
11
12
13.799
E
E
31
30
3.143
8.213
-0.463
0.350
DD_DT11DT12:DA30DA31_EE
10
1.586
-2.664
33.968
-0.622
1.004
3.213
37.171
D
D
12
13
7.807
E
E
30
29
3.265
4.959
0.548
0.135
DD_DT12DA13:DT29DA30_EE
11
-2.450
3.856
36.771
-0.446
-1.185
3.129
28.268
D
D
13
14
-1.129
E
E
29
28
3.136
-0.551
-0.175
-0.623
DD_DA13DC14:DG28DT29_EE
12
1.898
-3.890
28.200
-1.154
0.781
3.204
33.727
D
D
14
15
13.260
E
E
28
27
3.223
7.630
-0.692
0.205
DD_DC14DG15:DC27DG28_EE
13
-0.797
1.385
32.868
-0.881
1.064
3.306
35.170
D
D
15
16
7.210
E
E
27
26
3.358
4.346
0.197
-0.251
DD_DG15DA16:DT26DC27_EE
14
0.505
-0.839
34.905
-1.078
-0.250
2.829
31.068
D
D
16
17
7.503
E
E
26
25
3.016
4.005
0.766
-0.784
DD_DA16DC17:DG25DT26_EE
15
-2.339
4.382
30.728
-2.154
-1.834
3.576
41.528
D
D
17
18
15.850
E
E
25
24
4.016
11.101
-0.125
-1.103
DD_DC17DG18:DC24DG25_EE
16
3.425
-4.890
39.939
-2.953
0.607
3.092
31.256
D
D
18
19
6.488
E
E
24
23
3.156
3.489
0.360
-0.476
DD_DG18DC19:DG23DC24_EE
17
0.662
-1.232
31.058
-1.517
-0.548
2.987
28.759
D
D
19
20
9.256
E
E
23
22
3.110
4.576
-0.253
-0.434
DD_DC19DT20:DA22DG23_EE
18
1.543
-3.120
28.359
-1.838
0.834
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Refinement description
1
0
2003-09-02
1
1
2008-04-29
1
2
2011-07-13
1
3
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2003-06-24
REL
REL
HOH
water
1B72
PDB ENTRY 1B72
PDB
experimental model
HOH
11
5
HOH
HOH
21
D
HOH
12
5
HOH
HOH
22
D
HOH
15
5
HOH
HOH
23
D
HOH
18
5
HOH
HOH
24
D
HOH
21
5
HOH
HOH
25
D
HOH
24
5
HOH
HOH
26
D
HOH
26
5
HOH
HOH
27
D
HOH
28
5
HOH
HOH
28
D
HOH
34
5
HOH
HOH
29
D
HOH
37
5
HOH
HOH
30
D
HOH
46
5
HOH
HOH
31
D
HOH
47
5
HOH
HOH
32
D
HOH
53
5
HOH
HOH
33
D
HOH
58
5
HOH
HOH
34
D
HOH
59
5
HOH
HOH
35
D
HOH
60
5
HOH
HOH
36
D
HOH
65
5
HOH
HOH
37
D
HOH
69
5
HOH
HOH
38
D
HOH
70
5
HOH
HOH
39
D
HOH
75
5
HOH
HOH
40
D
HOH
76
5
HOH
HOH
41
D
HOH
99
5
HOH
HOH
42
D
HOH
105
5
HOH
HOH
43
D
HOH
112
5
HOH
HOH
44
D
HOH
116
5
HOH
HOH
45
D
HOH
120
5
HOH
HOH
46
D
HOH
121
5
HOH
HOH
47
D
HOH
126
5
HOH
HOH
48
D
HOH
137
5
HOH
HOH
49
D
HOH
143
5
HOH
HOH
50
D
HOH
182
5
HOH
HOH
51
D
HOH
188
5
HOH
HOH
52
D
HOH
189
5
HOH
HOH
53
D
HOH
205
5
HOH
HOH
54
D
HOH
219
5
HOH
HOH
55
D
HOH
221
5
HOH
HOH
56
D
HOH
227
5
HOH
HOH
57
D
HOH
229
5
HOH
HOH
58
D
HOH
230
5
HOH
HOH
59
D
HOH
233
5
HOH
HOH
60
D
HOH
241
5
HOH
HOH
61
D
HOH
242
5
HOH
HOH
62
D
HOH
243
5
HOH
HOH
63
D
HOH
2
5
HOH
HOH
41
E
HOH
3
5
HOH
HOH
42
E
HOH
5
5
HOH
HOH
43
E
HOH
6
5
HOH
HOH
44
E
HOH
7
5
HOH
HOH
45
E
HOH
8
5
HOH
HOH
46
E
HOH
13
5
HOH
HOH
47
E
HOH
16
5
HOH
HOH
48
E
HOH
20
5
HOH
HOH
49
E
HOH
22
5
HOH
HOH
50
E
HOH
23
5
HOH
HOH
51
E
HOH
29
5
HOH
HOH
52
E
HOH
30
5
HOH
HOH
53
E
HOH
33
5
HOH
HOH
54
E
HOH
35
5
HOH
HOH
55
E
HOH
36
5
HOH
HOH
56
E
HOH
38
5
HOH
HOH
57
E
HOH
39
5
HOH
HOH
58
E
HOH
40
5
HOH
HOH
59
E
HOH
50
5
HOH
HOH
60
E
HOH
56
5
HOH
HOH
61
E
HOH
66
5
HOH
HOH
62
E
HOH
67
5
HOH
HOH
63
E
HOH
77
5
HOH
HOH
64
E
HOH
80
5
HOH
HOH
65
E
HOH
89
5
HOH
HOH
66
E
HOH
95
5
HOH
HOH
67
E
HOH
100
5
HOH
HOH
68
E
HOH
102
5
HOH
HOH
69
E
HOH
104
5
HOH
HOH
70
E
HOH
107
5
HOH
HOH
71
E
HOH
113
5
HOH
HOH
72
E
HOH
115
5
HOH
HOH
73
E
HOH
118
5
HOH
HOH
74
E
HOH
122
5
HOH
HOH
75
E
HOH
125
5
HOH
HOH
76
E
HOH
136
5
HOH
HOH
77
E
HOH
141
5
HOH
HOH
78
E
HOH
148
5
HOH
HOH
79
E
HOH
150
5
HOH
HOH
80
E
HOH
155
5
HOH
HOH
81
E
HOH
161
5
HOH
HOH
82
E
HOH
163
5
HOH
HOH
83
E
HOH
168
5
HOH
HOH
84
E
HOH
174
5
HOH
HOH
85
E
HOH
177
5
HOH
HOH
86
E
HOH
178
5
HOH
HOH
87
E
HOH
180
5
HOH
HOH
88
E
HOH
185
5
HOH
HOH
89
E
HOH
191
5
HOH
HOH
90
E
HOH
193
5
HOH
HOH
91
E
HOH
196
5
HOH
HOH
92
E
HOH
200
5
HOH
HOH
93
E
HOH
208
5
HOH
HOH
94
E
HOH
213
5
HOH
HOH
95
E
HOH
218
5
HOH
HOH
96
E
HOH
224
5
HOH
HOH
97
E
HOH
225
5
HOH
HOH
98
E
HOH
245
5
HOH
HOH
99
E
HOH
247
5
HOH
HOH
100
E
HOH
1
5
HOH
HOH
270
A
HOH
9
5
HOH
HOH
271
A
HOH
10
5
HOH
HOH
272
A
HOH
14
5
HOH
HOH
273
A
HOH
19
5
HOH
HOH
274
A
HOH
25
5
HOH
HOH
275
A
HOH
31
5
HOH
HOH
276
A
HOH
42
5
HOH
HOH
277
A
HOH
43
5
HOH
HOH
278
A
HOH
44
5
HOH
HOH
279
A
HOH
61
5
HOH
HOH
280
A
HOH
63
5
HOH
HOH
281
A
HOH
64
5
HOH
HOH
282
A
HOH
71
5
HOH
HOH
283
A
HOH
72
5
HOH
HOH
284
A
HOH
73
5
HOH
HOH
285
A
HOH
74
5
HOH
HOH
286
A
HOH
79
5
HOH
HOH
287
A
HOH
86
5
HOH
HOH
288
A
HOH
87
5
HOH
HOH
289
A
HOH
90
5
HOH
HOH
290
A
HOH
93
5
HOH
HOH
291
A
HOH
94
5
HOH
HOH
292
A
HOH
98
5
HOH
HOH
293
A
HOH
101
5
HOH
HOH
294
A
HOH
108
5
HOH
HOH
295
A
HOH
109
5
HOH
HOH
296
A
HOH
110
5
HOH
HOH
297
A
HOH
123
5
HOH
HOH
298
A
HOH
124
5
HOH
HOH
299
A
HOH
127
5
HOH
HOH
300
A
HOH
130
5
HOH
HOH
301
A
HOH
131
5
HOH
HOH
302
A
HOH
132
5
HOH
HOH
303
A
HOH
135
5
HOH
HOH
304
A
HOH
138
5
HOH
HOH
305
A
HOH
139
5
HOH
HOH
306
A
HOH
140
5
HOH
HOH
307
A
HOH
142
5
HOH
HOH
308
A
HOH
145
5
HOH
HOH
309
A
HOH
151
5
HOH
HOH
310
A
HOH
154
5
HOH
HOH
311
A
HOH
156
5
HOH
HOH
312
A
HOH
157
5
HOH
HOH
313
A
HOH
158
5
HOH
HOH
314
A
HOH
159
5
HOH
HOH
315
A
HOH
162
5
HOH
HOH
316
A
HOH
169
5
HOH
HOH
317
A
HOH
170
5
HOH
HOH
318
A
HOH
172
5
HOH
HOH
319
A
HOH
173
5
HOH
HOH
320
A
HOH
179
5
HOH
HOH
321
A
HOH
181
5
HOH
HOH
322
A
HOH
183
5
HOH
HOH
323
A
HOH
184
5
HOH
HOH
324
A
HOH
186
5
HOH
HOH
325
A
HOH
187
5
HOH
HOH
326
A
HOH
190
5
HOH
HOH
327
A
HOH
195
5
HOH
HOH
328
A
HOH
202
5
HOH
HOH
329
A
HOH
204
5
HOH
HOH
330
A
HOH
207
5
HOH
HOH
331
A
HOH
209
5
HOH
HOH
332
A
HOH
214
5
HOH
HOH
333
A
HOH
215
5
HOH
HOH
334
A
HOH
217
5
HOH
HOH
335
A
HOH
222
5
HOH
HOH
336
A
HOH
223
5
HOH
HOH
337
A
HOH
231
5
HOH
HOH
338
A
HOH
235
5
HOH
HOH
339
A
HOH
236
5
HOH
HOH
340
A
HOH
237
5
HOH
HOH
341
A
HOH
239
5
HOH
HOH
342
A
HOH
240
5
HOH
HOH
343
A
HOH
244
5
HOH
HOH
344
A
HOH
246
5
HOH
HOH
345
A
HOH
4
5
HOH
HOH
306
B
HOH
17
5
HOH
HOH
307
B
HOH
27
5
HOH
HOH
308
B
HOH
32
5
HOH
HOH
309
B
HOH
41
5
HOH
HOH
310
B
HOH
45
5
HOH
HOH
311
B
HOH
48
5
HOH
HOH
312
B
HOH
49
5
HOH
HOH
313
B
HOH
51
5
HOH
HOH
314
B
HOH
52
5
HOH
HOH
315
B
HOH
54
5
HOH
HOH
316
B
HOH
55
5
HOH
HOH
317
B
HOH
57
5
HOH
HOH
318
B
HOH
62
5
HOH
HOH
319
B
HOH
68
5
HOH
HOH
320
B
HOH
78
5
HOH
HOH
321
B
HOH
81
5
HOH
HOH
322
B
HOH
82
5
HOH
HOH
323
B
HOH
83
5
HOH
HOH
324
B
HOH
84
5
HOH
HOH
325
B
HOH
85
5
HOH
HOH
326
B
HOH
88
5
HOH
HOH
327
B
HOH
91
5
HOH
HOH
328
B
HOH
92
5
HOH
HOH
329
B
HOH
96
5
HOH
HOH
330
B
HOH
97
5
HOH
HOH
331
B
HOH
103
5
HOH
HOH
332
B
HOH
106
5
HOH
HOH
333
B
HOH
111
5
HOH
HOH
334
B
HOH
114
5
HOH
HOH
335
B
HOH
117
5
HOH
HOH
336
B
HOH
119
5
HOH
HOH
337
B
HOH
128
5
HOH
HOH
338
B
HOH
129
5
HOH
HOH
339
B
HOH
133
5
HOH
HOH
340
B
HOH
134
5
HOH
HOH
341
B
HOH
144
5
HOH
HOH
342
B
HOH
146
5
HOH
HOH
343
B
HOH
147
5
HOH
HOH
344
B
HOH
149
5
HOH
HOH
345
B
HOH
152
5
HOH
HOH
346
B
HOH
153
5
HOH
HOH
347
B
HOH
160
5
HOH
HOH
348
B
HOH
164
5
HOH
HOH
349
B
HOH
165
5
HOH
HOH
350
B
HOH
166
5
HOH
HOH
351
B
HOH
167
5
HOH
HOH
352
B
HOH
171
5
HOH
HOH
353
B
HOH
175
5
HOH
HOH
354
B
HOH
176
5
HOH
HOH
355
B
HOH
192
5
HOH
HOH
356
B
HOH
194
5
HOH
HOH
357
B
HOH
197
5
HOH
HOH
358
B
HOH
198
5
HOH
HOH
359
B
HOH
199
5
HOH
HOH
360
B
HOH
201
5
HOH
HOH
361
B
HOH
203
5
HOH
HOH
362
B
HOH
206
5
HOH
HOH
363
B
HOH
210
5
HOH
HOH
364
B
HOH
211
5
HOH
HOH
365
B
HOH
212
5
HOH
HOH
366
B
HOH
216
5
HOH
HOH
367
B
HOH
220
5
HOH
HOH
368
B
HOH
226
5
HOH
HOH
369
B
HOH
228
5
HOH
HOH
370
B
HOH
232
5
HOH
HOH
371
B
HOH
234
5
HOH
HOH
372
B
HOH
238
5
HOH
HOH
373
B
ADE
1
n
1
DA
1
D
CYT
2
n
2
DC
2
D
THY
3
n
3
DT
3
D
CYT
4
n
4
DC
4
D
THY
5
n
5
DT
5
D
ADE
6
n
6
DA
6
D
THY
7
n
7
DT
7
D
GUA
8
n
8
DG
8
D
ADE
9
n
9
DA
9
D
THY
10
n
10
DT
10
D
THY
11
n
11
DT
11
D
THY
12
n
12
DT
12
D
ADE
13
n
13
DA
13
D
CYT
14
n
14
DC
14
D
GUA
15
n
15
DG
15
D
ADE
16
n
16
DA
16
D
CYT
17
n
17
DC
17
D
GUA
18
n
18
DG
18
D
CYT
19
n
19
DC
19
D
THY
20
n
20
DT
20
D
THY
21
n
1
DT
21
E
ADE
22
n
2
DA
22
E
GUA
23
n
3
DG
23
E
CYT
24
n
4
DC
24
E
GUA
25
n
5
DG
25
E
THY
26
n
6
DT
26
E
CYT
27
n
7
DC
27
E
GUA
28
n
8
DG
28
E
THY
29
n
9
DT
29
E
ADE
30
n
10
DA
30
E
ADE
31
n
11
DA
31
E
ADE
32
n
12
DA
32
E
THY
33
n
13
DT
33
E
CYT
34
n
14
DC
34
E
ADE
35
n
15
DA
35
E
THY
36
n
16
DT
36
E
ADE
37
n
17
DA
37
E
GUA
38
n
18
DG
38
E
ADE
39
n
19
DA
39
E
GUA
40
n
20
DG
40
E
ASN
193
n
1
ASN
193
A
ASN
194
n
2
ASN
194
A
PRO
195
n
3
PRO
195
A
ALA
196
n
4
ALA
196
A
ALA
197
n
5
ALA
197
A
ASN
198
n
6
ASN
198
A
TRP
199
n
7
TRP
199
A
LEU
200
n
8
LEU
200
A
HIS
201
n
9
HIS
201
A
ALA
202
n
10
ALA
202
A
ARG
203
n
11
ARG
203
A
SER
204
n
12
SER
204
A
THR
205
n
13
THR
205
A
ARG
206
n
14
ARG
206
A
LYS
207
n
15
LYS
207
A
LYS
208
n
16
LYS
208
A
ARG
209
n
17
ARG
209
A
CYS
210
n
18
CYS
210
A
PRO
211
n
19
PRO
211
A
TYR
212
n
20
TYR
212
A
THR
213
n
21
THR
213
A
LYS
214
n
22
LYS
214
A
HIS
215
n
23
HIS
215
A
GLN
216
n
24
GLN
216
A
THR
217
n
25
THR
217
A
LEU
218
n
26
LEU
218
A
GLU
219
n
27
GLU
219
A
LEU
220
n
28
LEU
220
A
GLU
221
n
29
GLU
221
A
LYS
222
n
30
LYS
222
A
GLU
223
n
31
GLU
223
A
PHE
224
n
32
PHE
224
A
LEU
225
n
33
LEU
225
A
PHE
226
n
34
PHE
226
A
ALA
227
n
35
ASN
227
A
MET
228
n
36
MET
228
A
TYR
229
n
37
TYR
229
A
LEU
230
n
38
LEU
230
A
THR
231
n
39
THR
231
A
ARG
232
n
40
ARG
232
A
ASP
233
n
41
ASP
233
A
ARG
234
n
42
ARG
234
A
ARG
235
n
43
ARG
235
A
ALA
236
n
44
TYR
236
A
ALA
237
n
45
GLU
237
A
VAL
238
n
46
VAL
238
A
ALA
239
n
47
ALA
239
A
ALA
240
n
48
ARG
240
A
LEU
241
n
49
LEU
241
A
LEU
242
n
50
LEU
242
A
ASN
243
n
51
ASN
243
A
LEU
244
n
52
LEU
244
A
THR
245
n
53
THR
245
A
GLU
246
n
54
GLU
246
A
ARG
247
n
55
ARG
247
A
GLN
248
n
56
GLN
248
A
VAL
249
n
57
VAL
249
A
LYS
250
n
58
LYS
250
A
ILE
251
n
59
ILE
251
A
TRP
252
n
60
TRP
252
A
PHE
253
n
61
PHE
253
A
GLN
254
n
62
GLN
254
A
ASN
255
n
63
ASN
255
A
ARG
256
n
64
ARG
256
A
ARG
257
n
65
ARG
257
A
MET
258
n
66
MET
258
A
LYS
259
n
67
LYS
259
A
MET
260
n
68
MET
260
A
LYS
261
n
69
LYS
261
A
LYS
262
n
70
LYS
262
A
ILE
263
n
71
ILE
263
A
ASN
264
n
72
ASN
264
A
ALA
265
n
73
LYS
265
A
ALA
266
n
74
ASP
266
A
ARG
267
n
75
ARG
267
A
ALA
268
n
76
ALA
268
A
ALA
269
n
77
LYS
269
A
ALA
233
n
1
ALA
233
B
ARG
234
n
2
ARG
234
B
ARG
235
n
3
ARG
235
B
LYS
236
n
4
LYS
236
B
ARG
237
n
5
ARG
237
B
ARG
238
n
6
ARG
238
B
ASN
239
n
7
ASN
239
B
PHE
240
n
8
PHE
240
B
ASN
241
n
9
ASN
241
B
LYS
242
n
10
LYS
242
B
GLN
243
n
11
GLN
243
B
ALA
244
n
12
ALA
244
B
THR
245
n
13
THR
245
B
ALA
246
n
14
GLU
246
B
ILE
247
n
15
ILE
247
B
LEU
248
n
16
LEU
248
B
ASN
249
n
17
ASN
249
B
ALA
250
n
18
GLU
250
B
TYR
251
n
19
TYR
251
B
PHE
252
n
20
PHE
252
B
TYR
253
n
21
TYR
253
B
SER
254
n
22
SER
254
B
HIS
255
n
23
HIS
255
B
LEU
256
n
24
LEU
256
B
SER
257
n
25
SER
257
B
ASN
258
n
26
ASN
258
B
PRO
259
n
27
PRO
259
B
TYR
260
n
28
TYR
260
B
PRO
261
n
29
PRO
261
B
SER
262
n
30
SER
262
B
ALA
263
n
31
GLU
263
B
GLU
264
n
32
GLU
264
B
ALA
265
n
33
ALA
265
B
LYS
266
n
34
LYS
266
B
GLU
267
n
35
GLU
267
B
GLU
268
n
36
GLU
268
B
LEU
269
n
37
LEU
269
B
ALA
270
n
38
ALA
270
B
LYS
271
n
39
LYS
271
B
LYS
272
n
40
LYS
272
B
CYS
273
n
41
CYS
273
B
GLY
274
n
42
GLY
274
B
ILE
275
n
43
ILE
275
B
THR
276
n
44
THR
276
B
VAL
277
n
45
VAL
277
B
SER
278
n
46
SER
278
B
GLN
279
n
47
GLN
279
B
VAL
280
n
48
VAL
280
B
SER
281
n
49
SER
281
B
ASN
282
n
50
ASN
282
B
TRP
283
n
51
TRP
283
B
PHE
284
n
52
PHE
284
B
GLY
285
n
53
GLY
285
B
ASN
286
n
54
ASN
286
B
LYS
287
n
55
LYS
287
B
ARG
288
n
56
ARG
288
B
ILE
289
n
57
ILE
289
B
ARG
290
n
58
ARG
290
B
TYR
291
n
59
TYR
291
B
LYS
292
n
60
LYS
292
B
LYS
293
n
61
LYS
293
B
ASN
294
n
62
ASN
294
B
ILE
295
n
63
ILE
295
B
GLY
296
n
64
GLY
296
B
ALA
297
n
65
LYS
297
B
PHE
298
n
66
PHE
298
B
GLN
299
n
67
GLN
299
B
GLY
300
n
68
GLU
300
B
GLU
301
n
69
GLU
301
B
ALA
302
n
70
ALA
302
B
ASN
303
n
71
ASN
303
B
ILE
304
n
72
ILE
304
B
TYR
305
n
73
TYR
305
B
author_defined_assembly
4
tetrameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
CG
ASN
227
C
CG
ASN
35
1
Y
1
A
OD1
ASN
227
C
OD1
ASN
35
1
Y
1
A
ND2
ASN
227
C
ND2
ASN
35
1
Y
1
A
CG
TYR
236
C
CG
TYR
44
1
Y
1
A
CD1
TYR
236
C
CD1
TYR
44
1
Y
1
A
CD2
TYR
236
C
CD2
TYR
44
1
Y
1
A
CE1
TYR
236
C
CE1
TYR
44
1
Y
1
A
CE2
TYR
236
C
CE2
TYR
44
1
Y
1
A
CZ
TYR
236
C
CZ
TYR
44
1
Y
1
A
OH
TYR
236
C
OH
TYR
44
1
Y
1
A
CG
GLU
237
C
CG
GLU
45
1
Y
1
A
CD
GLU
237
C
CD
GLU
45
1
Y
1
A
OE1
GLU
237
C
OE1
GLU
45
1
Y
1
A
OE2
GLU
237
C
OE2
GLU
45
1
Y
1
A
CG
ARG
240
C
CG
ARG
48
1
Y
1
A
CD
ARG
240
C
CD
ARG
48
1
Y
1
A
NE
ARG
240
C
NE
ARG
48
1
Y
1
A
CZ
ARG
240
C
CZ
ARG
48
1
Y
1
A
NH1
ARG
240
C
NH1
ARG
48
1
Y
1
A
NH2
ARG
240
C
NH2
ARG
48
1
Y
1
A
CG
LYS
265
C
CG
LYS
73
1
Y
1
A
CD
LYS
265
C
CD
LYS
73
1
Y
1
A
CE
LYS
265
C
CE
LYS
73
1
Y
1
A
NZ
LYS
265
C
NZ
LYS
73
1
Y
1
A
CG
ASP
266
C
CG
ASP
74
1
Y
1
A
OD1
ASP
266
C
OD1
ASP
74
1
Y
1
A
OD2
ASP
266
C
OD2
ASP
74
1
Y
1
A
CG
LYS
269
C
CG
LYS
77
1
Y
1
A
CD
LYS
269
C
CD
LYS
77
1
Y
1
A
CE
LYS
269
C
CE
LYS
77
1
Y
1
A
NZ
LYS
269
C
NZ
LYS
77
1
Y
1
B
CG
GLU
246
D
CG
GLU
14
1
Y
1
B
CD
GLU
246
D
CD
GLU
14
1
Y
1
B
OE1
GLU
246
D
OE1
GLU
14
1
Y
1
B
OE2
GLU
246
D
OE2
GLU
14
1
Y
1
B
CG
GLU
250
D
CG
GLU
18
1
Y
1
B
CD
GLU
250
D
CD
GLU
18
1
Y
1
B
OE1
GLU
250
D
OE1
GLU
18
1
Y
1
B
OE2
GLU
250
D
OE2
GLU
18
1
Y
1
B
CG
GLU
263
D
CG
GLU
31
1
Y
1
B
CD
GLU
263
D
CD
GLU
31
1
Y
1
B
OE1
GLU
263
D
OE1
GLU
31
1
Y
1
B
OE2
GLU
263
D
OE2
GLU
31
1
Y
1
B
CG
LYS
297
D
CG
LYS
65
1
Y
1
B
CD
LYS
297
D
CD
LYS
65
1
Y
1
B
CE
LYS
297
D
CE
LYS
65
1
Y
1
B
NZ
LYS
297
D
NZ
LYS
65
1
Y
1
B
CB
GLU
300
D
CB
GLU
68
1
Y
1
B
CG
GLU
300
D
CG
GLU
68
1
Y
1
B
CD
GLU
300
D
CD
GLU
68
1
Y
1
B
OE1
GLU
300
D
OE1
GLU
68
1
Y
1
B
OE2
GLU
300
D
OE2
GLU
68
1
Y
1
A
A
OE1
O
GLU
HOH
221
320
2.19
1
D
DT
11
0.076
SIDE CHAIN
1
D
DC
17
0.103
SIDE CHAIN
1
E
DC
24
0.083
SIDE CHAIN
1
E
DA
37
0.093
SIDE CHAIN
1
8.61
1.10
110.50
119.11
D
D
D
O3'
P
OP2
DT
DT
DT
11
12
12
Y
1
7.64
1.10
110.50
118.14
D
D
D
O3'
P
OP2
DA
DC
DC
13
14
14
Y
1
2.05
0.30
108.30
110.35
D
D
D
O4'
C1'
N1
DC
DC
DC
17
17
17
N
1
-13.00
1.80
114.10
101.10
E
E
E
C5'
C4'
C3'
DA
DA
DA
37
37
37
N
1
A
A
O
O
HOH
HOH
317
317
2.14
1_555
3_555
1
A
SER
204
-52.48
-2.23
1
B
ASN
258
-172.29
73.44
1
B
GLU
300
85.10
-44.50
PROTEIN_REP.PARAM
PROTEIN.TOP
DNA-RNA_REP.PARAM
DNA-RNA.TOP
WATER_REP.PARAM
WATER.TOP
ION_REP.PARAM
ION.TOP
48.7
-2.44
0.00
0.00
-8.53
0.00
10.98
0.268
0.005
0.233
0.233
1.90
19.97
2873
30169
28839
10.0
95.6
RANDOM IN CNS
1537852.39
1537852.39
0.000000
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
PDB ENTRY 1B72
ENGH & HUBER
0.35
0.29
5.00
0.28
0.26
1.90
19.97
247
2329
0
814
1268
0.010
1.43
18.5
1.37
1.54
1.50
2.48
2.00
1.97
2.00
2.98
2.50
0.355
0.017
0.322
2.02
456
4155
6
9.9
93.5
31.6
1.900
20.000
1PUF
28839
0.000
0.065
1
22.3000
4.300
95.6
1.90
20.00
4.900
0.26
3.80
94.1
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
1.0
Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
A
THR
213
C
THR
21
HELX_P
A
ASN
227
C
ASN
35
1
1
15
A
THR
231
C
THR
39
HELX_P
A
ASN
243
C
ASN
51
1
2
13
A
THR
245
C
THR
53
HELX_P
A
ALA
268
C
ALA
76
1
3
24
B
ASN
241
D
ASN
9
HELX_P
B
HIS
255
D
HIS
23
1
4
15
B
SER
262
D
SER
30
HELX_P
B
GLY
274
D
GLY
42
1
5
13
B
THR
276
D
THR
44
HELX_P
B
ASN
294
D
ASN
62
1
6
19
B
GLU
300
D
GLU
68
HELX_P
B
TYR
305
D
TYR
73
1
7
6
hydrog
WATSON-CRICK
D
DC
2
A
N3
DC
2
1_555
E
DG
40
B
N1
DG
20
1_555
hydrog
WATSON-CRICK
D
DC
2
A
N4
DC
2
1_555
E
DG
40
B
O6
DG
20
1_555
hydrog
WATSON-CRICK
D
DC
2
A
O2
DC
2
1_555
E
DG
40
B
N2
DG
20
1_555
hydrog
WATSON-CRICK
D
DT
3
A
N3
DT
3
1_555
E
DA
39
B
N1
DA
19
1_555
hydrog
WATSON-CRICK
D
DT
3
A
O4
DT
3
1_555
E
DA
39
B
N6
DA
19
1_555
hydrog
WATSON-CRICK
D
DC
4
A
N3
DC
4
1_555
E
DG
38
B
N1
DG
18
1_555
hydrog
WATSON-CRICK
D
DC
4
A
N4
DC
4
1_555
E
DG
38
B
O6
DG
18
1_555
hydrog
WATSON-CRICK
D
DC
4
A
O2
DC
4
1_555
E
DG
38
B
N2
DG
18
1_555
hydrog
WATSON-CRICK
D
DT
5
A
N3
DT
5
1_555
E
DA
37
B
N1
DA
17
1_555
hydrog
WATSON-CRICK
D
DT
5
A
O4
DT
5
1_555
E
DA
37
B
N6
DA
17
1_555
hydrog
WATSON-CRICK
D
DA
6
A
N1
DA
6
1_555
E
DT
36
B
N3
DT
16
1_555
hydrog
WATSON-CRICK
D
DA
6
A
N6
DA
6
1_555
E
DT
36
B
O4
DT
16
1_555
hydrog
WATSON-CRICK
D
DT
7
A
N3
DT
7
1_555
E
DA
35
B
N1
DA
15
1_555
hydrog
WATSON-CRICK
D
DT
7
A
O4
DT
7
1_555
E
DA
35
B
N6
DA
15
1_555
hydrog
WATSON-CRICK
D
DG
8
A
N1
DG
8
1_555
E
DC
34
B
N3
DC
14
1_555
hydrog
WATSON-CRICK
D
DG
8
A
N2
DG
8
1_555
E
DC
34
B
O2
DC
14
1_555
hydrog
WATSON-CRICK
D
DG
8
A
O6
DG
8
1_555
E
DC
34
B
N4
DC
14
1_555
hydrog
WATSON-CRICK
D
DA
9
A
N1
DA
9
1_555
E
DT
33
B
N3
DT
13
1_555
hydrog
WATSON-CRICK
D
DA
9
A
N6
DA
9
1_555
E
DT
33
B
O4
DT
13
1_555
hydrog
WATSON-CRICK
D
DT
10
A
N3
DT
10
1_555
E
DA
32
B
N1
DA
12
1_555
hydrog
WATSON-CRICK
D
DT
10
A
O4
DT
10
1_555
E
DA
32
B
N6
DA
12
1_555
hydrog
WATSON-CRICK
D
DT
11
A
N3
DT
11
1_555
E
DA
31
B
N1
DA
11
1_555
hydrog
WATSON-CRICK
D
DT
11
A
O4
DT
11
1_555
E
DA
31
B
N6
DA
11
1_555
hydrog
WATSON-CRICK
D
DT
12
A
N3
DT
12
1_555
E
DA
30
B
N1
DA
10
1_555
hydrog
WATSON-CRICK
D
DT
12
A
O4
DT
12
1_555
E
DA
30
B
N6
DA
10
1_555
hydrog
WATSON-CRICK
D
DA
13
A
N1
DA
13
1_555
E
DT
29
B
N3
DT
9
1_555
hydrog
WATSON-CRICK
D
DA
13
A
N6
DA
13
1_555
E
DT
29
B
O4
DT
9
1_555
hydrog
WATSON-CRICK
D
DC
14
A
N3
DC
14
1_555
E
DG
28
B
N1
DG
8
1_555
hydrog
WATSON-CRICK
D
DC
14
A
N4
DC
14
1_555
E
DG
28
B
O6
DG
8
1_555
hydrog
WATSON-CRICK
D
DC
14
A
O2
DC
14
1_555
E
DG
28
B
N2
DG
8
1_555
hydrog
WATSON-CRICK
D
DG
15
A
N1
DG
15
1_555
E
DC
27
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
D
DG
15
A
N2
DG
15
1_555
E
DC
27
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
D
DG
15
A
O6
DG
15
1_555
E
DC
27
B
N4
DC
7
1_555
hydrog
WATSON-CRICK
D
DA
16
A
N1
DA
16
1_555
E
DT
26
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
D
DA
16
A
N6
DA
16
1_555
E
DT
26
B
O4
DT
6
1_555
hydrog
WATSON-CRICK
D
DC
17
A
N3
DC
17
1_555
E
DG
25
B
N1
DG
5
1_555
hydrog
WATSON-CRICK
D
DC
17
A
N4
DC
17
1_555
E
DG
25
B
O6
DG
5
1_555
hydrog
WATSON-CRICK
D
DC
17
A
O2
DC
17
1_555
E
DG
25
B
N2
DG
5
1_555
hydrog
WATSON-CRICK
D
DG
18
A
N1
DG
18
1_555
E
DC
24
B
N3
DC
4
1_555
hydrog
WATSON-CRICK
D
DG
18
A
N2
DG
18
1_555
E
DC
24
B
O2
DC
4
1_555
hydrog
WATSON-CRICK
D
DG
18
A
O6
DG
18
1_555
E
DC
24
B
N4
DC
4
1_555
hydrog
WATSON-CRICK
D
DC
19
A
N3
DC
19
1_555
E
DG
23
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
D
DC
19
A
N4
DC
19
1_555
E
DG
23
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
D
DC
19
A
O2
DC
19
1_555
E
DG
23
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
D
DT
20
A
N3
DT
20
1_555
E
DA
22
B
N1
DA
2
1_555
hydrog
WATSON-CRICK
D
DT
20
A
O4
DT
20
1_555
E
DA
22
B
N6
DA
2
1_555
Transcription/DNA
Homeodomian, Protein-DNA complex, Hox Hexapeptide, TALE homeodomain, Homeodomain interaction, Transcription-DNA COMPLEX
HXA9_MOUSE
UNP
3
193
P09631
NNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAK
PBX1_HUMAN
UNP
4
233
P40424
ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEEANIY
1PUF
PDB
1
1PUF
1PUF
PDB
2
1PUF
193
269
1PUF
193
269
P09631
A
1
1
77
233
305
1PUF
233
305
P40424
B
2
1
73
1
20
1PUF
1
20
1PUF
D
3
1
20
21
40
1PUF
21
40
1PUF
E
4
1
20
20
C 2 2 21