0.027212 0.000000 0.000000 0.000000 0.014584 0.000000 0.000000 0.000000 0.009472 0.00000 0.00000 0.00000 Kniewel, R. Buglino, J. Lima, C.D. 0000-0002-2487-9713 Burley, S.K. New York SGX Research Center for Structural Genomics (NYSGXRC) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 36.749 68.568 105.574 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C10 H17 N6 O13 P3 522.196 PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N P N 138 N O N 139 N O N 140 N O N 141 N N N 142 R P N 143 N O N 144 N O N 145 N O N 146 S P N 147 N O N 148 N O N 149 N O N 150 N C N 151 R C N 152 N O N 153 S C N 154 N O N 155 R C N 156 N O N 157 R C Y 158 N N Y 159 N C Y 160 N N Y 161 N C Y 162 N C N 163 N O Y 164 N N Y 165 N C N 166 N N Y 167 N N Y 168 N C N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N N N 187 S C N 188 N C N 189 N O N 190 N C Y 191 N C Y 192 N N Y 193 N C Y 194 N C Y 195 N N N 196 N O N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N O N 208 N H N 209 N H N 210 N N N 211 S C N 212 N C N 213 N O N 214 S C N 215 N C N 216 N C N 217 N C N 218 N O N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N N N 233 S C N 234 N C N 235 N O N 236 N C N 237 N C N 238 N C N 239 N C N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 N C N 259 N C N 260 N C N 261 N C N 262 N N N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N N N 280 S C N 281 N C N 282 N O N 283 N C N 284 N C N 285 N S N 286 N C N 287 N O N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N MG N 300 N N N 301 S C N 302 N C N 303 N O N 304 N C Y 305 N C Y 306 N C Y 307 N C Y 308 N C Y 309 N C Y 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N N N 324 S C N 325 N C N 326 N O N 327 N C N 328 N C N 329 N C N 330 N O N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N N N 341 S C N 342 N C N 343 N O N 344 N C N 345 N O N 346 N O N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N N N 355 S C N 356 N C N 357 N O N 358 R C N 359 N O N 360 N C N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N N N 372 S C N 373 N C N 374 N O N 375 N C Y 376 N C Y 377 N C Y 378 N C Y 379 N N Y 380 N C Y 381 N C Y 382 N C Y 383 N C Y 384 N C N 385 N O N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N N N 399 S C N 400 N C N 401 N O N 402 N C Y 403 N C Y 404 N C Y 405 N C Y 406 N C Y 407 N C Y 408 N C N 409 N O N 410 N O N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N N N 423 S C N 424 N C N 425 N O N 426 N C N 427 N C N 428 N C N 429 N O N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N doub N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing Y 164 N sing Y 165 N sing Y 166 N doub N 167 N sing Y 168 N sing Y 169 N sing Y 170 N doub N 171 N doub Y 172 N sing Y 173 N sing N 174 N sing N 175 N sing Y 176 N doub N 177 N sing N 178 N sing Y 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing Y 191 N sing Y 192 N doub Y 193 N doub N 194 N sing Y 195 N sing N 196 N sing Y 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing Y 299 N doub Y 300 N sing Y 301 N sing N 302 N sing Y 303 N doub N 304 N sing Y 305 N doub N 306 N sing Y 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N doub N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N doub N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N doub N 364 N sing N 365 N sing N 366 N sing N 367 N sing Y 368 N doub Y 369 N sing Y 370 N sing N 371 N sing Y 372 N doub Y 373 N sing Y 374 N sing N 375 N sing Y 376 N sing Y 377 N doub N 378 N sing Y 379 N doub N 380 N sing Y 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N doub N 392 N sing N 393 N sing N 394 N sing N 395 N sing Y 396 N doub Y 397 N sing Y 398 N sing N 399 N sing Y 400 N doub N 401 N sing Y 402 N doub N 403 N sing Y 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing To be Published 0353 Structure of the YlqF GTPase from B. subtilis 10.2210/pdb1puj/pdb pdb_00001puj 100 1 CCD 2003-03-01 ADSC QUANTUM 4 SAGITALLY FOCUSED Si(111) SINGLE WAVELENGTH M x-ray 1 0.9798 1.0 X4A NSLS 0.9798 SYNCHROTRON NSLS BEAMLINE X4A 32033.236 conserved hypothetical protein ylqF 1 man polymer 24.305 MAGNESIUM ION 1 syn non-polymer 522.196 PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER 1 syn non-polymer 18.015 water 163 nat water YlqF no no MTIQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGI RSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW VKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELFDA IGEKRGCLMSGGLINYDKTTEVIIRDIRTEKFGRLSFEQPTM MTIQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGI RSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW VKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELFDA IGEKRGCLMSGGLINYDKTTEVIIRDIRTEKFGRLSFEQPTM A NYSGXRC-T18 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Bacillus Escherichia sample YLQF 1423 Bacillus subtilis 562 Escherichia coli B834 DE3 plasmid PET T7 1 2.08 40.5 VAPOR DIFFUSION 6.5 11-13% PEG 8000, 0.1M Na Cacodylate pH 6.5 3% MPD, VAPOR DIFFUSION, temperature 291K 291 New York SGX Research Center for Structural Genomics NYSGXRC PSI, Protein Structure Initiative audit_author pdbx_struct_conn_angle struct_conn struct_site chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Derived calculations Structure summary Data collection Database references 1 0 2003-07-08 1 1 2008-04-29 1 2 2011-07-13 1 3 2021-02-03 1 4 2024-02-14 _audit_author.identifier_ORCID _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _database_2.pdbx_DOI _database_2.pdbx_database_accession Y RCSB Y RCSB 2003-06-24 REL REL MG MAGNESIUM ION GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HOH water MG 9001 2 MG MG 9001 A GNP 501 3 GNP GNP 501 A HOH 1 4 HOH HOH 9002 A HOH 2 4 HOH HOH 9003 A HOH 3 4 HOH HOH 9004 A HOH 4 4 HOH HOH 9005 A HOH 5 4 HOH HOH 9006 A HOH 6 4 HOH HOH 9007 A HOH 7 4 HOH HOH 9008 A HOH 8 4 HOH HOH 9009 A HOH 9 4 HOH HOH 9010 A HOH 10 4 HOH HOH 9011 A HOH 11 4 HOH HOH 9012 A HOH 12 4 HOH HOH 9013 A HOH 13 4 HOH HOH 9014 A HOH 14 4 HOH HOH 9015 A HOH 15 4 HOH HOH 9016 A HOH 16 4 HOH HOH 9017 A HOH 17 4 HOH HOH 9018 A HOH 18 4 HOH HOH 9019 A HOH 19 4 HOH HOH 9020 A HOH 20 4 HOH HOH 9021 A HOH 21 4 HOH HOH 9022 A HOH 22 4 HOH HOH 9023 A HOH 23 4 HOH HOH 9024 A HOH 24 4 HOH HOH 9025 A HOH 25 4 HOH HOH 9026 A HOH 26 4 HOH HOH 9027 A HOH 27 4 HOH HOH 9028 A HOH 28 4 HOH HOH 9029 A HOH 29 4 HOH HOH 9030 A HOH 30 4 HOH HOH 9031 A HOH 31 4 HOH HOH 9032 A HOH 32 4 HOH HOH 9033 A HOH 33 4 HOH HOH 9034 A HOH 34 4 HOH HOH 9035 A HOH 35 4 HOH HOH 9036 A HOH 36 4 HOH HOH 9037 A HOH 37 4 HOH HOH 9038 A HOH 38 4 HOH HOH 9039 A HOH 39 4 HOH HOH 9040 A HOH 40 4 HOH HOH 9041 A HOH 41 4 HOH HOH 9042 A HOH 42 4 HOH HOH 9043 A HOH 43 4 HOH HOH 9044 A HOH 44 4 HOH HOH 9045 A HOH 45 4 HOH HOH 9046 A HOH 46 4 HOH HOH 9047 A HOH 47 4 HOH HOH 9048 A HOH 48 4 HOH HOH 9049 A HOH 49 4 HOH HOH 9050 A HOH 50 4 HOH HOH 9051 A HOH 51 4 HOH HOH 9052 A HOH 52 4 HOH HOH 9053 A HOH 53 4 HOH HOH 9054 A HOH 54 4 HOH HOH 9055 A HOH 55 4 HOH HOH 9056 A HOH 56 4 HOH HOH 9057 A HOH 57 4 HOH HOH 9058 A HOH 58 4 HOH HOH 9059 A HOH 59 4 HOH HOH 9060 A HOH 60 4 HOH HOH 9061 A HOH 61 4 HOH HOH 9062 A HOH 62 4 HOH HOH 9063 A HOH 63 4 HOH HOH 9064 A HOH 64 4 HOH HOH 9065 A HOH 65 4 HOH HOH 9066 A HOH 66 4 HOH HOH 9067 A HOH 67 4 HOH HOH 9068 A HOH 68 4 HOH HOH 9069 A HOH 69 4 HOH HOH 9070 A HOH 70 4 HOH HOH 9071 A HOH 71 4 HOH HOH 9072 A HOH 72 4 HOH HOH 9073 A HOH 73 4 HOH HOH 9074 A HOH 74 4 HOH HOH 9075 A HOH 75 4 HOH HOH 9076 A HOH 76 4 HOH HOH 9077 A HOH 77 4 HOH HOH 9078 A HOH 78 4 HOH HOH 9079 A HOH 79 4 HOH HOH 9080 A HOH 80 4 HOH HOH 9081 A HOH 81 4 HOH HOH 9082 A HOH 82 4 HOH HOH 9083 A HOH 83 4 HOH HOH 9084 A HOH 84 4 HOH HOH 9085 A HOH 85 4 HOH HOH 9086 A HOH 86 4 HOH HOH 9087 A HOH 87 4 HOH HOH 9088 A HOH 88 4 HOH HOH 9089 A HOH 89 4 HOH HOH 9090 A HOH 90 4 HOH HOH 9091 A HOH 91 4 HOH HOH 9092 A HOH 92 4 HOH HOH 9093 A HOH 93 4 HOH HOH 9094 A HOH 94 4 HOH HOH 9095 A HOH 95 4 HOH HOH 9096 A HOH 96 4 HOH HOH 9097 A HOH 97 4 HOH HOH 9098 A HOH 98 4 HOH HOH 9099 A HOH 99 4 HOH HOH 9100 A HOH 100 4 HOH HOH 9101 A HOH 101 4 HOH HOH 9102 A HOH 102 4 HOH HOH 9103 A HOH 103 4 HOH HOH 9104 A HOH 105 4 HOH HOH 9105 A HOH 106 4 HOH HOH 9106 A HOH 107 4 HOH HOH 9107 A HOH 108 4 HOH HOH 9108 A HOH 109 4 HOH HOH 9109 A HOH 110 4 HOH HOH 9110 A HOH 111 4 HOH HOH 9111 A HOH 112 4 HOH HOH 9112 A HOH 113 4 HOH HOH 9113 A HOH 114 4 HOH HOH 9114 A HOH 115 4 HOH HOH 9115 A HOH 116 4 HOH HOH 9116 A HOH 117 4 HOH HOH 9117 A HOH 118 4 HOH HOH 9118 A HOH 119 4 HOH HOH 9119 A HOH 120 4 HOH HOH 9120 A HOH 121 4 HOH HOH 9121 A HOH 122 4 HOH HOH 9122 A HOH 123 4 HOH HOH 9123 A HOH 124 4 HOH HOH 9124 A HOH 125 4 HOH HOH 9125 A HOH 126 4 HOH HOH 9126 A HOH 127 4 HOH HOH 9127 A HOH 128 4 HOH HOH 9128 A HOH 129 4 HOH HOH 9129 A HOH 130 4 HOH HOH 9130 A HOH 131 4 HOH HOH 9131 A HOH 132 4 HOH HOH 9132 A HOH 133 4 HOH HOH 9133 A HOH 134 4 HOH HOH 9134 A HOH 135 4 HOH HOH 9135 A HOH 136 4 HOH HOH 9136 A HOH 137 4 HOH HOH 9137 A HOH 138 4 HOH HOH 9138 A HOH 139 4 HOH HOH 9139 A HOH 140 4 HOH HOH 9140 A HOH 141 4 HOH HOH 9141 A HOH 142 4 HOH HOH 9142 A HOH 143 4 HOH HOH 9143 A HOH 144 4 HOH HOH 9144 A HOH 145 4 HOH HOH 9145 A HOH 146 4 HOH HOH 9146 A HOH 147 4 HOH HOH 9147 A HOH 148 4 HOH HOH 9148 A HOH 149 4 HOH HOH 9149 A HOH 150 4 HOH HOH 9150 A HOH 151 4 HOH HOH 9151 A HOH 152 4 HOH HOH 9152 A HOH 153 4 HOH HOH 9153 A HOH 154 4 HOH HOH 9154 A HOH 155 4 HOH HOH 9155 A HOH 156 4 HOH HOH 9156 A HOH 157 4 HOH HOH 9157 A HOH 158 4 HOH HOH 9158 A HOH 159 4 HOH HOH 9159 A HOH 160 4 HOH HOH 9160 A HOH 161 4 HOH HOH 9161 A HOH 162 4 HOH HOH 9162 A HOH 163 4 HOH HOH 9163 A HOH 164 4 HOH HOH 9164 A n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A n 7 7 A n 8 8 A HIS 9 n 9 HIS 9 A MET 10 n 10 MET 10 A ALA 11 n 11 ALA 11 A LYS 12 n 12 LYS 12 A ALA 13 n 13 ALA 13 A ARG 14 n 14 ARG 14 A ARG 15 n 15 ARG 15 A GLU 16 n 16 GLU 16 A VAL 17 n 17 VAL 17 A THR 18 n 18 THR 18 A GLU 19 n 19 GLU 19 A LYS 20 n 20 LYS 20 A LEU 21 n 21 LEU 21 A LYS 22 n 22 LYS 22 A LEU 23 n 23 LEU 23 A ILE 24 n 24 ILE 24 A ASP 25 n 25 ASP 25 A ILE 26 n 26 ILE 26 A VAL 27 n 27 VAL 27 A TYR 28 n 28 TYR 28 A GLU 29 n 29 GLU 29 A LEU 30 n 30 LEU 30 A VAL 31 n 31 VAL 31 A ASP 32 n 32 ASP 32 A ALA 33 n 33 ALA 33 A ARG 34 n 34 ARG 34 A ILE 35 n 35 ILE 35 A PRO 36 n 36 PRO 36 A MET 37 n 37 MET 37 A SER 38 n 38 SER 38 A SER 39 n 39 SER 39 A ARG 40 n 40 ARG 40 A ASN 41 n 41 ASN 41 A PRO 42 n 42 PRO 42 A MET 43 n 43 MET 43 A ILE 44 n 44 ILE 44 A GLU 45 n 45 GLU 45 A ASP 46 n 46 ASP 46 A ILE 47 n 47 ILE 47 A LEU 48 n 48 LEU 48 A LYS 49 n 49 LYS 49 A ASN 50 n 50 ASN 50 A LYS 51 n 51 LYS 51 A PRO 52 n 52 PRO 52 A ARG 53 n 53 ARG 53 A ILE 54 n 54 ILE 54 A MET 55 n 55 MET 55 A LEU 56 n 56 LEU 56 A LEU 57 n 57 LEU 57 A ASN 58 n 58 ASN 58 A LYS 59 n 59 LYS 59 A ALA 60 n 60 ALA 60 A ASP 61 n 61 ASP 61 A LYS 62 n 62 LYS 62 A ALA 63 n 63 ALA 63 A ASP 64 n 64 ASP 64 A ALA 65 n 65 ALA 65 A ALA 66 n 66 ALA 66 A VAL 67 n 67 VAL 67 A THR 68 n 68 THR 68 A GLN 69 n 69 GLN 69 A GLN 70 n 70 GLN 70 A TRP 71 n 71 TRP 71 A LYS 72 n 72 LYS 72 A GLU 73 n 73 GLU 73 A HIS 74 n 74 HIS 74 A PHE 75 n 75 PHE 75 A GLU 76 n 76 GLU 76 A ASN 77 n 77 ASN 77 A GLN 78 n 78 GLN 78 A GLY 79 n 79 GLY 79 A ILE 80 n 80 ILE 80 A ARG 81 n 81 ARG 81 A SER 82 n 82 SER 82 A LEU 83 n 83 LEU 83 A SER 84 n 84 SER 84 A ILE 85 n 85 ILE 85 A ASN 86 n 86 ASN 86 A SER 87 n 87 SER 87 A VAL 88 n 88 VAL 88 A ASN 89 n 89 ASN 89 A GLY 90 n 90 GLY 90 A GLN 91 n 91 GLN 91 A GLY 92 n 92 GLY 92 A LEU 93 n 93 LEU 93 A ASN 94 n 94 ASN 94 A GLN 95 n 95 GLN 95 A ILE 96 n 96 ILE 96 A VAL 97 n 97 VAL 97 A PRO 98 n 98 PRO 98 A ALA 99 n 99 ALA 99 A SER 100 n 100 SER 100 A LYS 101 n 101 LYS 101 A GLU 102 n 102 GLU 102 A ILE 103 n 103 ILE 103 A LEU 104 n 104 LEU 104 A GLN 105 n 105 GLN 105 A GLU 106 n 106 GLU 106 A LYS 107 n 107 LYS 107 A PHE 108 n 108 PHE 108 A ASP 109 n 109 ASP 109 A ARG 110 n 110 ARG 110 A MET 111 n 111 MET 111 A ARG 112 n 112 ARG 112 A ALA 113 n 113 ALA 113 A LYS 114 n 114 LYS 114 A GLY 115 n 115 GLY 115 A VAL 116 n 116 VAL 116 A LYS 117 n 117 LYS 117 A PRO 118 n 118 PRO 118 A ARG 119 n 119 ARG 119 A ALA 120 n 120 ALA 120 A ILE 121 n 121 ILE 121 A ARG 122 n 122 ARG 122 A ALA 123 n 123 ALA 123 A LEU 124 n 124 LEU 124 A ILE 125 n 125 ILE 125 A ILE 126 n 126 ILE 126 A GLY 127 n 127 GLY 127 A ILE 128 n 128 ILE 128 A PRO 129 n 129 PRO 129 A ASN 130 n 130 ASN 130 A VAL 131 n 131 VAL 131 A GLY 132 n 132 GLY 132 A LYS 133 n 133 LYS 133 A SER 134 n 134 SER 134 A THR 135 n 135 THR 135 A LEU 136 n 136 LEU 136 A ILE 137 n 137 ILE 137 A ASN 138 n 138 ASN 138 A ARG 139 n 139 ARG 139 A LEU 140 n 140 LEU 140 A ALA 141 n 141 ALA 141 A LYS 142 n 142 LYS 142 A LYS 143 n 143 LYS 143 A ASN 144 n 144 ASN 144 A ILE 145 n 145 ILE 145 A ALA 146 n 146 ALA 146 A n 147 147 A n 148 148 A n 149 149 A n 150 150 A n 151 151 A n 152 152 A n 153 153 A n 154 154 A n 155 155 A n 156 156 A n 157 157 A n 158 158 A GLN 159 n 159 GLN 159 A TRP 160 n 160 TRP 160 A VAL 161 n 161 VAL 161 A LYS 162 n 162 LYS 162 A VAL 163 n 163 VAL 163 A GLY 164 n 164 GLY 164 A LYS 165 n 165 LYS 165 A GLU 166 n 166 GLU 166 A LEU 167 n 167 LEU 167 A GLU 168 n 168 GLU 168 A LEU 169 n 169 LEU 169 A LEU 170 n 170 LEU 170 A ASP 171 n 171 ASP 171 A THR 172 n 172 THR 172 A PRO 173 n 173 PRO 173 A GLY 174 n 174 GLY 174 A ILE 175 n 175 ILE 175 A LEU 176 n 176 LEU 176 A TRP 177 n 177 TRP 177 A PRO 178 n 178 PRO 178 A LYS 179 n 179 LYS 179 A PHE 180 n 180 PHE 180 A GLU 181 n 181 GLU 181 A ASP 182 n 182 ASP 182 A GLU 183 n 183 GLU 183 A LEU 184 n 184 LEU 184 A VAL 185 n 185 VAL 185 A GLY 186 n 186 GLY 186 A LEU 187 n 187 LEU 187 A ARG 188 n 188 ARG 188 A LEU 189 n 189 LEU 189 A ALA 190 n 190 ALA 190 A VAL 191 n 191 VAL 191 A THR 192 n 192 THR 192 A GLY 193 n 193 GLY 193 A ALA 194 n 194 ALA 194 A ILE 195 n 195 ILE 195 A LYS 196 n 196 LYS 196 A ASP 197 n 197 ASP 197 A SER 198 n 198 SER 198 A ILE 199 n 199 ILE 199 A ILE 200 n 200 ILE 200 A ASN 201 n 201 ASN 201 A LEU 202 n 202 LEU 202 A GLN 203 n 203 GLN 203 A ASP 204 n 204 ASP 204 A VAL 205 n 205 VAL 205 A ALA 206 n 206 ALA 206 A VAL 207 n 207 VAL 207 A PHE 208 n 208 PHE 208 A GLY 209 n 209 GLY 209 A LEU 210 n 210 LEU 210 A ARG 211 n 211 ARG 211 A PHE 212 n 212 PHE 212 A LEU 213 n 213 LEU 213 A GLU 214 n 214 GLU 214 A GLU 215 n 215 GLU 215 A HIS 216 n 216 HIS 216 A TYR 217 n 217 TYR 217 A PRO 218 n 218 PRO 218 A GLU 219 n 219 GLU 219 A ARG 220 n 220 ARG 220 A LEU 221 n 221 LEU 221 A LYS 222 n 222 LYS 222 A GLU 223 n 223 GLU 223 A ARG 224 n 224 ARG 224 A TYR 225 n 225 TYR 225 A GLY 226 n 226 GLY 226 A LEU 227 n 227 LEU 227 A ASP 228 n 228 ASP 228 A GLU 229 n 229 GLU 229 A ILE 230 n 230 ILE 230 A PRO 231 n 231 PRO 231 A GLU 232 n 232 GLU 232 A ASP 233 n 233 ASP 233 A ILE 234 n 234 ILE 234 A ALA 235 n 235 ALA 235 A GLU 236 n 236 GLU 236 A LEU 237 n 237 LEU 237 A PHE 238 n 238 PHE 238 A ASP 239 n 239 ASP 239 A ALA 240 n 240 ALA 240 A ILE 241 n 241 ILE 241 A GLY 242 n 242 GLY 242 A GLU 243 n 243 GLU 243 A LYS 244 n 244 LYS 244 A ARG 245 n 245 ARG 245 A GLY 246 n 246 GLY 246 A CYS 247 n 247 CYS 247 A LEU 248 n 248 LEU 248 A MET 249 n 249 MET 249 A SER 250 n 250 SER 250 A GLY 251 n 251 GLY 251 A GLY 252 n 252 GLY 252 A LEU 253 n 253 LEU 253 A ILE 254 n 254 ILE 254 A ASN 255 n 255 ASN 255 A TYR 256 n 256 TYR 256 A ASP 257 n 257 ASP 257 A LYS 258 n 258 LYS 258 A THR 259 n 259 THR 259 A THR 260 n 260 THR 260 A GLU 261 n 261 GLU 261 A VAL 262 n 262 VAL 262 A ILE 263 n 263 ILE 263 A ILE 264 n 264 ILE 264 A ARG 265 n 265 ARG 265 A ASP 266 n 266 ASP 266 A ILE 267 n 267 ILE 267 A ARG 268 n 268 ARG 268 A THR 269 n 269 THR 269 A GLU 270 n 270 GLU 270 A LYS 271 n 271 LYS 271 A PHE 272 n 272 PHE 272 A GLY 273 n 273 GLY 273 A ARG 274 n 274 ARG 274 A LEU 275 n 275 LEU 275 A SER 276 n 276 SER 276 A PHE 277 n 277 PHE 277 A GLU 278 n 278 GLU 278 A GLN 279 n 279 GLN 279 A PRO 280 n 280 PRO 280 A THR 281 n 281 THR 281 A n 282 282 A author_defined_assembly 1 monomeric A SER 134 A OG SER 134 1_555 A MG 9001 B MG MG 1_555 A GNP 501 C O2G GNP 1_555 168.2 A SER 134 A OG SER 134 1_555 A MG 9001 B MG MG 1_555 A GNP 501 C O2B GNP 1_555 92.9 A GNP 501 C O2G GNP 1_555 A MG 9001 B MG MG 1_555 A GNP 501 C O2B GNP 1_555 77.9 A SER 134 A OG SER 134 1_555 A MG 9001 B MG MG 1_555 A HOH 9036 D O HOH 1_555 114.2 A GNP 501 C O2G GNP 1_555 A MG 9001 B MG MG 1_555 A HOH 9036 D O HOH 1_555 72.9 A GNP 501 C O2B GNP 1_555 A MG 9001 B MG MG 1_555 A HOH 9036 D O HOH 1_555 85.6 A SER 134 A OG SER 134 1_555 A MG 9001 B MG MG 1_555 A HOH 9108 D O HOH 1_555 92.6 A GNP 501 C O2G GNP 1_555 A MG 9001 B MG MG 1_555 A HOH 9108 D O HOH 1_555 77.2 A GNP 501 C O2B GNP 1_555 A MG 9001 B MG MG 1_555 A HOH 9108 D O HOH 1_555 69.2 A HOH 9036 D O HOH 1_555 A MG 9001 B MG MG 1_555 A HOH 9108 D O HOH 1_555 144.3 A SER 134 A OG SER 134 1_555 A MG 9001 B MG MG 1_555 A HOH 9150 D O HOH 1_555 90.0 A GNP 501 C O2G GNP 1_555 A MG 9001 B MG MG 1_555 A HOH 9150 D O HOH 1_555 96.6 A GNP 501 C O2B GNP 1_555 A MG 9001 B MG MG 1_555 A HOH 9150 D O HOH 1_555 162.7 A HOH 9036 D O HOH 1_555 A MG 9001 B MG MG 1_555 A HOH 9150 D O HOH 1_555 108.7 A HOH 9108 D O HOH 1_555 A MG 9001 B MG MG 1_555 A HOH 9150 D O HOH 1_555 93.6 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LEU 83 A O LEU 83 A N MET 55 A N MET 55 A O LEU 56 A O LEU 56 A N GLU 29 A N GLU 29 A N TYR 28 A N TYR 28 A O LEU 124 A O LEU 124 A N ALA 123 A N ALA 123 A O GLU 168 A O GLU 168 A O LEU 169 A O LEU 169 A N VAL 161 A N VAL 161 1 A MET 1 A MET 1 1 Y 1 A THR 2 A THR 2 1 Y 1 A ILE 3 A ILE 3 1 Y 1 A GLN 4 A GLN 4 1 Y 1 A TRP 5 A TRP 5 1 Y 1 A PHE 6 A PHE 6 1 Y 1 A PRO 7 A PRO 7 1 Y 1 A GLY 8 A GLY 8 1 Y 1 A LYS 147 A LYS 147 1 Y 1 A THR 148 A THR 148 1 Y 1 A GLY 149 A GLY 149 1 Y 1 A ASP 150 A ASP 150 1 Y 1 A ARG 151 A ARG 151 1 Y 1 A PRO 152 A PRO 152 1 Y 1 A GLY 153 A GLY 153 1 Y 1 A ILE 154 A ILE 154 1 Y 1 A THR 155 A THR 155 1 Y 1 A THR 156 A THR 156 1 Y 1 A SER 157 A SER 157 1 Y 1 A GLN 158 A GLN 158 1 Y 1 A MET 282 A MET 282 1 Y 1 A LEU 48 -89.34 41.06 1 A ASN 50 77.47 -22.27 1 A TRP 160 64.93 80.36 1 A LEU 176 -108.93 -157.40 1 A PRO 178 -45.50 -77.85 1 A GLU 181 -32.64 -30.36 1 A ASP 182 -58.04 106.91 PROTEIN_REP.PARAM PROTEIN.TOP DNA-RNA_REP.PARAM DNA-RNA.TOP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP GNP_XPLOR_PAR.TXT GNP_XPLOR_TOP.TXT 30.3 1.46 0.00 0.00 4.16 0.00 -5.62 BULK SOLVENT MODEL USED 0.25 0.008 0.216 0.2161 2.00 19.41 938 18704 18423 5.1 98.5 RANDOM 1 RESTRAINED THROUGHOUT 0.0 SAD Engh & Huber FLAT MODEL 56.9506 0.398855 0.28 0.20 2.00 19.41 163 2281 33 0 2085 0.005 1.1 20.9 0.76 1.54 1.50 2.50 2.00 2.21 2.00 3.32 2.50 0.274 0.022 0.243 2.13 153 2780 6 5.2 96.5 22.6 2.00 20. 1PUJ 18754 18735 -3 0.074 1 99.9 2.00 2.07 99.6 data reduction DENZO data scaling SCALEPACK phasing SOLVE model building RESOLVE refinement CNS 1.1 phasing RESOLVE Structure of B. subtilis YlqF GTPase 1 N N 2 N N 3 N N 4 N N A ALA 11 A ALA 11 HELX_P A LEU 21 A LEU 21 1 1 11 A LYS 22 A LYS 22 HELX_P A ILE 24 A ILE 24 5 2 3 A ASN 41 A ASN 41 HELX_P A LEU 48 A LEU 48 1 3 8 A LYS 59 A LYS 59 HELX_P A ALA 63 A ALA 63 5 4 5 A ASP 64 A ASP 64 HELX_P A ASN 77 A ASN 77 1 5 14 A GLY 92 A GLY 92 HELX_P A ASN 94 A ASN 94 5 6 3 A GLN 95 A GLN 95 HELX_P A LYS 114 A LYS 114 1 7 20 A GLY 132 A GLY 132 HELX_P A LYS 142 A LYS 142 1 8 11 A ASP 182 A ASP 182 HELX_P A GLY 193 A GLY 193 1 9 12 A ASN 201 A ASN 201 HELX_P A TYR 217 A TYR 217 1 10 17 A TYR 217 A TYR 217 HELX_P A TYR 225 A TYR 225 1 11 9 A ASP 233 A ASP 233 HELX_P A GLY 246 A GLY 246 1 12 14 A ASN 255 A ASN 255 HELX_P A THR 269 A THR 269 1 13 15 metalc 2.299 A SER 134 A OG SER 134 1_555 A MG 9001 B MG MG 1_555 metalc 2.563 A GNP 501 C O2G GNP 1_555 A MG 9001 B MG MG 1_555 metalc 2.513 A GNP 501 C O2B GNP 1_555 A MG 9001 B MG MG 1_555 metalc 2.449 A MG 9001 B MG MG 1_555 A HOH 9036 D O HOH 1_555 metalc 2.884 A MG 9001 B MG MG 1_555 A HOH 9108 D O HOH 1_555 metalc 2.597 A MG 9001 B MG MG 1_555 A HOH 9150 D O HOH 1_555 SIGNALING PROTEIN STRUCTURAL GENOMICS, NYSGXRC T18, GTPASE, PSI, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, SIGNALING PROTEIN O31743_BACSU UNP 1 1 O31743 MTIQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGI RSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW VKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELFDA IGEKRGCLMSGGLINYDKTTEVIIRDIRTEKFGRLSFEQPTM 1 282 1PUJ 1 282 O31743 A 1 1 282 6 parallel parallel parallel parallel anti-parallel A SER 82 A SER 82 A SER 84 A SER 84 A ARG 53 A ARG 53 A ASN 58 A ASN 58 A ILE 26 A ILE 26 A ASP 32 A ASP 32 A ILE 121 A ILE 121 A GLY 127 A GLY 127 A LEU 167 A LEU 167 A ASP 171 A ASP 171 A VAL 161 A VAL 161 A VAL 163 A VAL 163 BINDING SITE FOR RESIDUE MG A 9001 A MG 9001 Software 5 BINDING SITE FOR RESIDUE GNP A 501 A GNP 501 Software 23 A SER 134 A SER 134 5 1_555 A GNP 501 C GNP 5 1_555 A HOH 9036 D HOH 5 1_555 A HOH 9108 D HOH 5 1_555 A HOH 9150 D HOH 5 1_555 A LYS 49 A LYS 49 23 1_655 A ASN 58 A ASN 58 23 1_555 A LYS 59 A LYS 59 23 1_555 A ASP 61 A ASP 61 23 1_555 A LYS 62 A LYS 62 23 1_555 A ASN 86 A ASN 86 23 1_555 A SER 87 A SER 87 23 1_555 A VAL 88 A VAL 88 23 1_555 A PRO 129 A PRO 129 23 1_555 A ASN 130 A ASN 130 23 1_555 A VAL 131 A VAL 131 23 1_555 A GLY 132 A GLY 132 23 1_555 A LYS 133 A LYS 133 23 1_555 A SER 134 A SER 134 23 1_555 A THR 135 A THR 135 23 1_555 A GLY 174 A GLY 174 23 1_555 A MG 9001 B MG 23 1_555 A HOH 9036 D HOH 23 1_555 A HOH 9037 D HOH 23 1_555 A HOH 9108 D HOH 23 1_555 A HOH 9141 D HOH 23 1_555 A HOH 9146 D HOH 23 1_555 A HOH 9163 D HOH 23 1_555 19 orthorhombic P 21 21 21