0.055648 -0.007328 -0.010360 0.000000 0.037468 -0.000285 0.000000 0.000000 0.030118 0.00000 0.00000 0.00000 Rasmussen, H. Kastrup, J.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 88.20 79.40 82.50 17.970 26.920 33.780 C11 H16 N7 O3 1 294.290 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-ADENINE peptide-like C10 H16 N5 O4 1 270.265 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-CYTOSINE peptide-like C11 H16 N7 O4 1 310.289 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-GUANINE peptide-like H2 O 18.015 WATER non-polymer H2 N 16.023 AMINO GROUP non-polymer C11 H17 N4 O5 1 285.276 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-THYMINE peptide-like N 1 N C N 2 N C N 3 N O N 4 N C N 5 N C N 6 N O N 7 N O N 8 N N N 9 N C N 10 N C N 11 N N Y 12 N N Y 13 N C Y 14 N N Y 15 N C Y 16 N C N 17 N N Y 18 N N Y 19 N C Y 20 N N Y 21 N C N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N C N 39 N C N 40 N O N 41 N C N 42 N C N 43 N O N 44 N O N 45 N N N 46 N C N 47 N C N 48 N N N 49 N N N 50 N C N 51 N N N 52 N C N 53 N C N 54 N C N 55 N O N 56 N N N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N C N 74 N C N 75 N O N 76 N C N 77 N C N 78 N O N 79 N O N 80 N N N 81 N C N 82 N C N 83 N N Y 84 N N Y 85 N C Y 86 N N Y 87 N C N 88 N C N 89 N O N 90 N N N 91 N C N 92 N N N 93 N N Y 94 N C N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N H N 113 N H N 114 N N N 115 N H N 116 N H N 117 N C N 118 N C N 119 N O N 120 N C N 121 N C N 122 N O N 123 N O N 124 N N N 125 N C N 126 N C N 127 N N N 128 N N N 129 N C N 130 N C N 131 N O N 132 N N N 133 N C N 134 N O N 135 N C N 136 N C N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N doub N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N doub N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N doub N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N doub N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N doub N 66 N doub N 67 N sing N 68 N sing N 69 N doub N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N doub N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N doub N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing US Nat.Struct.Biol. NSBIEW 2024 1072-8368 4 98 101 10.1038/nsb0297-98 9033585 Crystal structure of a peptide nucleic acid (PNA) duplex at 1.7 A resolution. 1997 US Science SCIEAS 0038 0036-8075 270 1838 1841 A Nucleic Acid Triple Helix Formed by a Peptide Nucleic Acid-DNA Complex 1995 US Nat.Struct.Biol. NSBIEW 2024 1072-8368 3 410 413 Solution Structure of a Petide Nucleic Acid-DNA Duplex 1996 US Science SCIEAS 0038 0036-8075 265 777 780 NMR Solution Structure of a Peptide Nucleic Acid Complexed with RNA 1994 10.2210/pdb1pup/pdb pdb_00001pup 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 285.00 1 IMAGE PLATE 1995-09-01 RIGAKU RAXIS II M x-ray 1 1.0 ROTATING ANODE RIGAKU RU200 1585.633 PNA (H-P(*CPN*GPN*TPN*APN*CPN*GPN)-NH2) 2 man polymer 18.015 water 82 nat water no yes (CPN)(GPN)(TPN)(APN)(CPN)(GPN)(NH2) XXXXXXX A,B polydeoxyribonucleotide n n n n n n n 1 2.51 51.01 DERIVATIVE DATA WERE COLLECTED AT EMBL, HAMBURG AT BEAMLINE X31 TO 1.9 A RESOLUTION. VAPOR DIFFUSION, HANGING DROP 7.00 pH 7.00, VAPOR DIFFUSION, HANGING DROP WATER 1 NACL 1 MGCL2 1 N(C16H33)(CH3)3BR 1 10.313 1 19 A 1 B 13 -3.673 A_CPN1:GPN13_B 1 -8.306 0.045 -0.001 -0.105 3.460 1 19 A 2 B 12 -1.468 A_GPN2:CPN12_B 2 -7.788 -0.142 0.014 -0.132 -4.319 1 20 A 3 B 11 0.114 A_TPN3:APN11_B 3 -6.060 -0.150 0.216 -0.124 5.139 1 20 A 4 B 10 -0.387 A_APN4:TPN10_B 4 -5.282 0.200 0.210 -0.088 -2.534 1 19 A 5 B 9 -1.784 A_CPN5:GPN9_B 5 -6.474 0.115 -0.054 -0.081 -11.868 1 19 A 6 B 8 -3.347 A_GPN6:CPN8_B 6 -9.429 -0.125 0.116 -0.126 2.076 20.287 A A 1 2 24.771 B B 13 12 3.385 8.452 0.024 -2.397 AA_CPN1GPN2:CPN12GPN13_BB 1 -1.768 5.180 18.375 -10.165 -0.769 3.617 19.318 A A 2 3 -3.360 B B 12 11 3.462 -1.126 0.081 -2.980 AA_GPN2TPN3:APN11CPN12_BB 2 -1.163 3.469 19.250 -8.270 -0.871 2.946 22.092 A A 3 4 1.122 B B 11 10 2.988 0.430 0.114 -2.010 AA_TPN3APN4:TPN10APN11_BB 3 -0.468 1.220 22.083 -5.394 -0.459 3.578 17.899 A A 4 5 -2.520 B B 10 9 3.470 -0.783 -0.068 -3.070 AA_APN4CPN5:GPN9TPN10_BB 4 1.676 -5.397 17.804 -9.374 1.272 2.367 22.395 A A 5 6 21.243 B B 9 8 3.415 8.069 -0.321 -2.296 AA_CPN5GPN6:CPN8GPN9_BB 5 0.391 -1.030 20.904 -8.653 0.960 atom_site chem_comp_atom chem_comp_bond database_2 pdbx_validate_close_contact struct_conn struct_site repository Initial release Version format compliance Non-polymer description Version format compliance Other Advisory Atomic model Data collection Database references Derived calculations 1 0 1997-02-25 1 1 2008-05-22 1 2 2011-07-13 1 3 2012-03-28 2 0 2023-11-15 _atom_site.auth_atom_id _atom_site.label_atom_id _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_validate_close_contact.auth_atom_id_1 _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr2_label_atom_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id NDB Y NDB 1996-11-01 REL HOH water HOH 16 2 HOH HOH 16 A HOH 17 2 HOH HOH 17 A HOH 20 2 HOH HOH 20 A HOH 22 2 HOH HOH 22 A HOH 25 2 HOH HOH 25 A HOH 27 2 HOH HOH 27 A HOH 31 2 HOH HOH 31 A HOH 36 2 HOH HOH 36 A HOH 39 2 HOH HOH 39 A HOH 40 2 HOH HOH 40 A HOH 41 2 HOH HOH 41 A HOH 42 2 HOH HOH 42 A HOH 44 2 HOH HOH 44 A HOH 47 2 HOH HOH 47 A HOH 49 2 HOH HOH 49 A HOH 55 2 HOH HOH 55 A HOH 58 2 HOH HOH 58 A HOH 59 2 HOH HOH 59 A HOH 65 2 HOH HOH 65 A HOH 66 2 HOH HOH 66 A HOH 67 2 HOH HOH 67 A HOH 68 2 HOH HOH 68 A HOH 75 2 HOH HOH 75 A HOH 76 2 HOH HOH 76 A HOH 79 2 HOH HOH 79 A HOH 80 2 HOH HOH 80 A HOH 82 2 HOH HOH 82 A HOH 86 2 HOH HOH 86 A HOH 88 2 HOH HOH 88 A HOH 89 2 HOH HOH 89 A HOH 91 2 HOH HOH 91 A HOH 95 2 HOH HOH 95 A HOH 96 2 HOH HOH 96 A HOH 15 2 HOH HOH 15 B HOH 18 2 HOH HOH 18 B HOH 19 2 HOH HOH 19 B HOH 21 2 HOH HOH 21 B HOH 23 2 HOH HOH 23 B HOH 24 2 HOH HOH 24 B HOH 26 2 HOH HOH 26 B HOH 28 2 HOH HOH 28 B HOH 29 2 HOH HOH 29 B HOH 30 2 HOH HOH 30 B HOH 32 2 HOH HOH 32 B HOH 33 2 HOH HOH 33 B HOH 34 2 HOH HOH 34 B HOH 35 2 HOH HOH 35 B HOH 37 2 HOH HOH 37 B HOH 38 2 HOH HOH 38 B HOH 43 2 HOH HOH 43 B HOH 45 2 HOH HOH 45 B HOH 46 2 HOH HOH 46 B HOH 48 2 HOH HOH 48 B HOH 50 2 HOH HOH 50 B HOH 51 2 HOH HOH 51 B HOH 52 2 HOH HOH 52 B HOH 53 2 HOH HOH 53 B HOH 54 2 HOH HOH 54 B HOH 56 2 HOH HOH 56 B HOH 57 2 HOH HOH 57 B HOH 60 2 HOH HOH 60 B HOH 61 2 HOH HOH 61 B HOH 62 2 HOH HOH 62 B HOH 63 2 HOH HOH 63 B HOH 64 2 HOH HOH 64 B HOH 69 2 HOH HOH 69 B HOH 70 2 HOH HOH 70 B HOH 71 2 HOH HOH 71 B HOH 72 2 HOH HOH 72 B HOH 73 2 HOH HOH 73 B HOH 74 2 HOH HOH 74 B HOH 77 2 HOH HOH 77 B HOH 78 2 HOH HOH 78 B HOH 81 2 HOH HOH 81 B HOH 83 2 HOH HOH 83 B HOH 84 2 HOH HOH 84 B HOH 85 2 HOH HOH 85 B HOH 87 2 HOH HOH 87 B HOH 90 2 HOH HOH 90 B HOH 92 2 HOH HOH 92 B HOH 93 2 HOH HOH 93 B HOH 94 2 HOH HOH 94 B CPN 1 n 1 CPN 1 A GPN 2 n 2 GPN 2 A TPN 3 n 3 TPN 3 A APN 4 n 4 APN 4 A CPN 5 n 5 CPN 5 A GPN 6 n 6 GPN 6 A NH2 7 n 7 NH2 7 A CPN 8 n 1 CPN 8 B GPN 9 n 2 GPN 9 B TPN 10 n 3 TPN 10 B APN 11 n 4 APN 11 B CPN 12 n 5 CPN 12 B GPN 13 n 6 GPN 13 B NH2 14 n 7 NH2 14 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A O O TPN HOH 3 65 1.92 B 1 B B O O TPN HOH 10 33 2.15 A PARAM.PNA TOPH_JULY96.PNA 11.70 0.2500000 0.2050000 0.2500000 0.2050000 1.700 6.000 530 5222 10.00 77.000 RANDOM 100000.000 0.1000 1 2.000 SIR TR isotropic TR isotropic 1.700 6.000 82 318 0 0 236 0.016 2.60 0.73 0.1840000 0.2850000 1.78 21 182 8 10.00 25.00 fix fix 15.80 1.700 25.000 1PUP 5222 1.000 0.0320000 1 13.100 1.900 77.000 0.0580000 1.700 1.900 7.300 1 1.900 37.00 phasing MLPHARE refinement X-PLOR 3.1 data reduction DENZO data scaling CCP4 CRYSTAL STRUCTURE OF A PEPTIDE NUCLEIC ACID (PNA) DUPLEX AT 1.7 ANGSTROMS RESOLUTION 1 N N 1 N N 2 N N 2 N N covale 1.348 both A CPN 1 A C CPN 1 1_555 A GPN 2 A N GPN 2 1_555 covale 1.341 both A A GPN 2 A C GPN 2 1_555 A TPN 3 A N TPN 3 1_555 covale 1.334 both B A GPN 2 A C GPN 2 1_555 A TPN 3 A N TPN 3 1_555 covale 1.332 both A A A TPN 3 A C TPN 3 1_555 A APN 4 A N APN 4 1_555 covale 1.337 both B B A TPN 3 A C TPN 3 1_555 A APN 4 A N APN 4 1_555 covale 1.354 both A A APN 4 A C APN 4 1_555 A CPN 5 A N CPN 5 1_555 covale 1.348 both B A APN 4 A C APN 4 1_555 A CPN 5 A N CPN 5 1_555 covale 1.346 both A CPN 5 A C CPN 5 1_555 A GPN 6 A N GPN 6 1_555 covale 1.332 both A GPN 6 A C GPN 6 1_555 A NH2 7 A N NH2 7 1_555 covale 1.323 both B CPN 8 B C CPN 1 1_555 B GPN 9 B N GPN 2 1_555 covale 1.347 both A B GPN 9 B C GPN 2 1_555 B TPN 10 B N TPN 3 1_555 covale 1.342 both B B GPN 9 B C GPN 2 1_555 B TPN 10 B N TPN 3 1_555 covale 1.339 both A A B TPN 10 B C TPN 3 1_555 B APN 11 B N APN 4 1_555 covale 1.339 both B B B TPN 10 B C TPN 3 1_555 B APN 11 B N APN 4 1_555 covale 1.334 both A B APN 11 B C APN 4 1_555 B CPN 12 B N CPN 5 1_555 covale 1.335 both B B APN 11 B C APN 4 1_555 B CPN 12 B N CPN 5 1_555 covale 1.343 both B CPN 12 B C CPN 5 1_555 B GPN 13 B N GPN 6 1_555 covale 1.249 both B GPN 13 B C GPN 6 1_555 B NH2 14 B N NH2 7 1_555 hydrog WATSON-CRICK A CPN 1 A N3 CPN 1 1_555 B GPN 13 B N1 GPN 6 1_555 hydrog WATSON-CRICK A CPN 1 A N4 CPN 1 1_555 B GPN 13 B O6 GPN 6 1_555 hydrog WATSON-CRICK A CPN 1 A O2 CPN 1 1_555 B GPN 13 B N2 GPN 6 1_555 hydrog WATSON-CRICK A GPN 2 A N1 GPN 2 1_555 B CPN 12 B N3 CPN 5 1_555 hydrog WATSON-CRICK A GPN 2 A N2 GPN 2 1_555 B CPN 12 B O2 CPN 5 1_555 hydrog WATSON-CRICK A GPN 2 A O6 GPN 2 1_555 B CPN 12 B N4 CPN 5 1_555 hydrog WATSON-CRICK A TPN 3 A N3 TPN 3 1_555 B APN 11 B N1 APN 4 1_555 hydrog WATSON-CRICK A TPN 3 A O4 TPN 3 1_555 B APN 11 B N6 APN 4 1_555 hydrog WATSON-CRICK A APN 4 A N1 APN 4 1_555 B TPN 10 B N3 TPN 3 1_555 hydrog WATSON-CRICK A APN 4 A N6 APN 4 1_555 B TPN 10 B O4 TPN 3 1_555 hydrog WATSON-CRICK A CPN 5 A N3 CPN 5 1_555 B GPN 9 B N1 GPN 2 1_555 hydrog WATSON-CRICK A CPN 5 A N4 CPN 5 1_555 B GPN 9 B O6 GPN 2 1_555 hydrog WATSON-CRICK A CPN 5 A O2 CPN 5 1_555 B GPN 9 B N2 GPN 2 1_555 hydrog WATSON-CRICK A GPN 6 A N1 GPN 6 1_555 B CPN 8 B N3 CPN 1 1_555 hydrog WATSON-CRICK A GPN 6 A N2 GPN 6 1_555 B CPN 8 B O2 CPN 1 1_555 hydrog WATSON-CRICK A GPN 6 A O6 GPN 6 1_555 B CPN 8 B N4 CPN 1 1_555 PEPTIDE NUCLEIC ACID PEPTIDE NUCLEIC ACID, DNA ANALOGUE, DOUBLE HELIX 1PUP PDB 1 1PUP 1 7 1PUP 1 7 1PUP A 1 1 7 8 14 1PUP 8 14 1PUP B 1 1 7 BINDING SITE FOR RESIDUE NH2 A 7 A NH2 7 Software 3 BINDING SITE FOR RESIDUE NH2 B 14 B NH2 14 Software 3 A GPN 6 A GPN 6 3 1_555 A HOH 22 C HOH 3 1_555 B HOH 32 D HOH 3 1_555 B GPN 13 B GPN 6 3 1_555 B HOH 26 D HOH 3 1_555 B HOH 94 D HOH 3 1_555 2 P -1