1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Kim, B.
Ryu, K.-S.
Kim, H.J.
Choi, B.-S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Febs J.
1742-464X
272
2467
2476
10.1111/j.1742-4658.2005.04667.x
15885096
Solution structure and backbone dynamics of the XPC-binding domain of the human DNA repair protein hHR23B.
2005
10.2210/pdb1pve/pdb
pdb_00001pve
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
8145.148
UV excision repair protein RAD23 homolog B
XPC binding domain
1
man
polymer
HHR23B
no
no
GSHMPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGG
GSHMPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
HH23B
9606
Homo sapiens
562
Escherichia coli
BL21(DE3)pLysS
PLASMID
pET15b
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2004-08-10
1
1
2008-04-29
1
2
2011-07-13
1
3
2022-03-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_ref_seq_dif.details
RCSB
Y
PDBJ
2003-06-27
REL
REL
the structures are based on a total of 1312 restraints, 1242 are NOE-derived distance constraints, 70 dihedral angle restraints ( 14 from Jhnha and 56 from TALOS)
structures with the least restraint violations
50
20
3D_15N-separated_NOESY
3D_13C-separated_NOESY
HNHA
40mM Sodium Phosphate, 160mM Sodium Chloride, 10mM CHAPS
7.0
1
atm
300
K
Automatic NOE assignment, distance geometry, simulated annealing, molecular dynamics
20
closest to the average
1mM hHR23B(275-342) U-15N, 13C; 40mM phosphate buffer NA; 10mM CHAPS NA
90% H2O/10% D2O
Varian
collection
VNMR
6.3c
Frank Delaglio
processing
NMRPipe
Peter Guentert
structure solution
CYANA
1.6
David A. Case etc
refinement
Amber
7
600
Varian
INOVA
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
HIS
3
n
3
HIS
3
A
MET
4
n
4
MET
4
A
PRO
5
n
5
PRO
5
A
LEU
6
n
6
LEU
6
A
GLU
7
n
7
GLU
7
A
PHE
8
n
8
PHE
8
A
LEU
9
n
9
LEU
9
A
ARG
10
n
10
ARG
10
A
ASN
11
n
11
ASN
11
A
GLN
12
n
12
GLN
12
A
PRO
13
n
13
PRO
13
A
GLN
14
n
14
GLN
14
A
PHE
15
n
15
PHE
15
A
GLN
16
n
16
GLN
16
A
GLN
17
n
17
GLN
17
A
MET
18
n
18
MET
18
A
ARG
19
n
19
ARG
19
A
GLN
20
n
20
GLN
20
A
ILE
21
n
21
ILE
21
A
ILE
22
n
22
ILE
22
A
GLN
23
n
23
GLN
23
A
GLN
24
n
24
GLN
24
A
ASN
25
n
25
ASN
25
A
PRO
26
n
26
PRO
26
A
SER
27
n
27
SER
27
A
LEU
28
n
28
LEU
28
A
LEU
29
n
29
LEU
29
A
PRO
30
n
30
PRO
30
A
ALA
31
n
31
ALA
31
A
LEU
32
n
32
LEU
32
A
LEU
33
n
33
LEU
33
A
GLN
34
n
34
GLN
34
A
GLN
35
n
35
GLN
35
A
ILE
36
n
36
ILE
36
A
GLY
37
n
37
GLY
37
A
ARG
38
n
38
ARG
38
A
GLU
39
n
39
GLU
39
A
ASN
40
n
40
ASN
40
A
PRO
41
n
41
PRO
41
A
GLN
42
n
42
GLN
42
A
LEU
43
n
43
LEU
43
A
LEU
44
n
44
LEU
44
A
GLN
45
n
45
GLN
45
A
GLN
46
n
46
GLN
46
A
ILE
47
n
47
ILE
47
A
SER
48
n
48
SER
48
A
GLN
49
n
49
GLN
49
A
HIS
50
n
50
HIS
50
A
GLN
51
n
51
GLN
51
A
GLU
52
n
52
GLU
52
A
HIS
53
n
53
HIS
53
A
PHE
54
n
54
PHE
54
A
ILE
55
n
55
ILE
55
A
GLN
56
n
56
GLN
56
A
MET
57
n
57
MET
57
A
LEU
58
n
58
LEU
58
A
ASN
59
n
59
ASN
59
A
GLU
60
n
60
GLU
60
A
PRO
61
n
61
PRO
61
A
VAL
62
n
62
VAL
62
A
GLN
63
n
63
GLN
63
A
GLU
64
n
64
GLU
64
A
ALA
65
n
65
ALA
65
A
GLY
66
n
66
GLY
66
A
GLY
67
n
67
GLY
67
A
GLN
68
n
68
GLN
68
A
GLY
69
n
69
GLY
69
A
GLY
70
n
70
GLY
70
A
GLY
71
n
71
GLY
71
A
GLY
72
n
72
GLY
72
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
20
A
ARG
19
0.080
SIDE CHAIN
3
3.80
0.50
120.30
124.10
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
10
10
10
N
3
3.77
0.50
120.30
124.07
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
19
19
19
N
6
3.02
0.50
120.30
123.32
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
19
19
19
N
7
3.02
0.50
120.30
123.32
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
10
10
10
N
7
3.02
0.50
120.30
123.32
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
19
19
19
N
11
3.01
0.50
120.30
123.31
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
19
19
19
N
12
4.03
0.50
120.30
124.33
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
10
10
10
N
12
3.35
0.50
120.30
123.65
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
19
19
19
N
13
3.36
0.50
120.30
123.66
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
10
10
10
N
13
3.36
0.50
120.30
123.66
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
19
19
19
N
14
3.04
0.50
120.30
123.34
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
19
19
19
N
15
4.07
0.50
120.30
124.37
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
19
19
19
N
16
3.33
0.50
120.30
123.63
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
19
19
19
N
18
3.72
0.50
120.30
124.02
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
19
19
19
N
20
3.29
0.50
120.30
123.59
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
19
19
19
N
1
A
MET
4
-156.16
86.22
1
A
GLN
17
-130.75
-47.68
3
A
SER
2
-153.96
37.78
3
A
LEU
6
61.53
-10.02
3
A
HIS
50
-141.63
28.47
3
A
ALA
65
-144.76
-10.39
4
A
GLN
17
-128.83
-50.46
4
A
ASN
40
-154.16
73.35
4
A
HIS
50
-140.63
20.80
5
A
HIS
50
-141.69
24.30
5
A
GLU
64
58.96
-166.03
6
A
LEU
6
57.64
20.00
6
A
ARG
10
-69.97
26.97
6
A
PRO
61
-49.91
154.25
7
A
GLN
23
-67.87
2.75
7
A
ASN
40
-151.87
73.20
8
A
GLU
7
-150.57
-26.52
8
A
GLN
23
-68.91
2.30
9
A
LEU
6
60.94
-6.57
10
A
ASN
11
-144.46
19.79
10
A
GLN
17
-128.12
-51.15
10
A
GLN
23
-67.95
2.26
10
A
ASN
40
-151.84
72.90
10
A
GLN
63
63.32
-2.65
11
A
MET
4
65.43
153.19
11
A
GLN
23
-66.40
0.68
11
A
ASN
40
-153.66
72.69
12
A
ASN
11
-144.23
22.22
12
A
GLN
14
48.56
-22.96
12
A
GLN
17
-131.68
-51.26
12
A
GLU
64
72.41
-42.96
12
A
ALA
65
-141.61
-8.47
13
A
GLN
14
59.14
-15.98
13
A
GLN
23
-69.13
1.44
13
A
ASN
40
-158.82
76.13
13
A
HIS
50
-141.18
27.52
13
A
GLU
64
-137.92
-40.51
13
A
ALA
65
47.78
18.90
14
A
ALA
65
58.19
-28.49
15
A
MET
4
-151.06
21.77
15
A
ARG
10
-69.72
2.52
16
A
ASN
40
-155.19
74.75
17
A
SER
2
-69.68
91.54
17
A
GLN
17
-135.02
-42.04
17
A
HIS
50
-140.78
26.18
18
A
SER
2
-142.20
-31.17
18
A
HIS
3
-150.70
-22.21
18
A
ASN
40
-151.36
61.26
18
A
GLN
63
55.48
17.69
18
A
GLU
64
-147.11
-31.46
19
A
SER
2
57.49
-174.67
19
A
GLN
23
-66.91
2.79
19
A
ASN
40
-151.70
74.88
19
A
HIS
50
-140.84
18.24
19
A
GLN
63
-145.94
-41.77
19
A
ALA
65
-150.14
-18.88
20
A
HIS
3
58.15
172.08
20
A
GLN
23
-67.26
2.29
20
A
GLU
39
-142.54
-25.49
20
A
GLN
56
-59.60
-9.95
20
A
GLN
68
-140.59
13.62
Solution structure of XPC binding domain of hHR23B
1
N
N
A
LEU
6
A
LEU
6
HELX_P
A
ARG
10
A
ARG
10
5
1
5
A
GLN
17
A
GLN
17
HELX_P
A
GLN
23
A
GLN
23
1
2
7
A
ASN
25
A
ASN
25
HELX_P
A
SER
27
A
SER
27
5
3
3
A
LEU
28
A
LEU
28
HELX_P
A
ARG
38
A
ARG
38
1
4
11
A
ASN
40
A
ASN
40
HELX_P
A
GLN
49
A
GLN
49
1
5
10
A
HIS
50
A
HIS
50
HELX_P
A
GLU
60
A
GLU
60
1
6
11
A
GLU
64
A
GLU
64
HELX_P
A
GLY
69
A
GLY
69
5
7
6
DNA BINDING PROTEIN
hHR23B, XPC binding domain, NMR solution structure, Nucleotide excision repair, CHAPS, DNA BINDING PROTEIN
A
GLY
71
A
GLY
71
8
A
GLY
72
A
GLY
72
-0.26
A
GLY
67
A
GLY
67
9
A
GLN
68
A
GLN
68
-3.55
A
SER
2
A
SER
2
16
A
HIS
3
A
HIS
3
-0.77
A
GLU
64
A
GLU
64
19
A
ALA
65
A
ALA
65
-7.18
A
GLY
67
A
GLY
67
19
A
GLN
68
A
GLN
68
-4.85
A
GLY
71
A
GLY
71
19
A
GLY
72
A
GLY
72
-5.20
RD23B_HUMAN
UNP
1
275
P54727
PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGG
275
342
1PVE
5
72
P54727
A
1
5
72
1
cloning artifact
GLY
1
1PVE
A
P54727
UNP
1
1
cloning artifact
SER
2
1PVE
A
P54727
UNP
2
1
cloning artifact
HIS
3
1PVE
A
P54727
UNP
3
1
cloning artifact
MET
4
1PVE
A
P54727
UNP
4