0.019608
0.000000
0.000000
0.000000
0.014925
0.000000
0.000000
0.000000
0.009930
0.00000
0.00000
0.00000
Silvaggi, N.R.
Josephine, H.R.
Pratt, R.F.
Kelly, J.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
51.000
67.000
100.700
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C H2 O
30.026
FORMYL GROUP
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C17 H25 N4 O7 S -1
429.468
(2S,5R,6R)-6-{[(6R)-6-(GLYCYLAMINO)-7-OXIDO-7-OXOHEPTANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLATE
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
C
N
89
N
O
N
90
N
H
N
91
N
H
N
92
N
N
N
93
S
C
N
94
N
C
N
95
N
O
N
96
N
C
N
97
N
C
N
98
N
C
N
99
N
O
N
100
N
N
N
101
N
O
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
N
N
113
S
C
N
114
N
C
N
115
N
O
N
116
N
C
N
117
N
C
N
118
N
C
N
119
N
O
N
120
N
O
N
121
N
O
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
N
N
132
N
C
N
133
N
C
N
134
N
O
N
135
N
O
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
C
N
142
N
O
N
143
N
C
N
144
N
O
N
145
N
C
N
146
N
O
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
S
N
156
N
C
N
157
S
C
N
158
N
N
N
159
R
C
N
160
R
C
N
161
N
C
N
162
N
N
N
163
N
C
N
164
N
O
N
165
N
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
S
C
N
170
N
C
N
171
N
O
N
172
N
O
N
173
N
N
N
174
N
C
N
175
N
O
N
176
N
C
N
177
N
N
N
178
N
C
N
179
N
C
N
180
N
C
N
181
N
O
N
182
N
O
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
N
C
Y
214
N
C
Y
215
N
N
Y
216
N
C
Y
217
N
C
Y
218
N
N
N
219
N
O
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
O
N
231
N
H
N
232
N
H
N
233
N
N
N
234
S
C
N
235
N
C
N
236
N
O
N
237
S
C
N
238
N
C
N
239
N
C
N
240
N
C
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
N
N
256
S
C
N
257
N
C
N
258
N
O
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
C
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
N
N
278
S
C
N
279
N
C
N
280
N
O
N
281
N
C
N
282
N
C
N
283
N
C
N
284
N
C
N
285
N
N
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
N
N
303
S
C
N
304
N
C
N
305
N
O
N
306
N
C
N
307
N
C
N
308
N
S
N
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
C
N
351
N
C
N
352
N
O
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
N
N
363
S
C
N
364
N
C
N
365
N
O
N
366
N
C
N
367
N
O
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
N
N
377
S
C
N
378
N
C
N
379
N
O
N
380
R
C
N
381
N
O
N
382
N
C
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
N
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
N
407
N
O
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
N
N
421
S
C
N
422
N
C
N
423
N
O
N
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
N
431
N
O
N
432
N
O
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
N
N
445
S
C
N
446
N
C
N
447
N
O
N
448
N
C
N
449
N
C
N
450
N
C
N
451
N
O
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
doub
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
Y
211
N
sing
Y
212
N
doub
Y
213
N
doub
N
214
N
sing
Y
215
N
sing
N
216
N
sing
Y
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
doub
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
doub
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
Y
319
N
doub
Y
320
N
sing
Y
321
N
sing
N
322
N
sing
Y
323
N
doub
N
324
N
sing
Y
325
N
doub
N
326
N
sing
Y
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
doub
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
doub
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
Y
388
N
doub
Y
389
N
sing
Y
390
N
sing
N
391
N
sing
Y
392
N
doub
Y
393
N
sing
Y
394
N
sing
N
395
N
sing
Y
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
doub
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
Y
416
N
doub
Y
417
N
sing
Y
418
N
sing
N
419
N
sing
Y
420
N
doub
N
421
N
sing
Y
422
N
doub
N
423
N
sing
Y
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
doub
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
345
521
533
10.1016/j.jmb.2004.10.076
15581896
Crystal structures of complexes between the R61 DD-peptidase and peptidoglycan-mimetic beta-lactams: a non-covalent complex with a "perfect penicillin"
2005
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
322
111
122
10.1016/S0022-2836(02)00742-8
Structures of Two Kinetic Intermediates Reveal Species Specificity of Penicillin-Binding Proteins
2002
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
98
1427
1431
10.1073/pnas.98.4.1427
A 1.2-A Snapshot of the Final Step of Bacterial Cell Wall Biosynthesis
2001
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
254
223
236
10.1006/jmbi.1995.0613
The Refined Crystallographic Structure of a Dd-Peptidase Penicillin-Target Enzyme at 1.6 A Resolution
1995
10.2210/pdb1pw1/pdb
pdb_00001pw1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
100.0
1
MIRRORS
CCD
2002-10-27
BRANDEIS - B4
SI(111)
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
1.00
1.0
X12C
NSLS
1.0
1.00
SYNCHROTRON
NSLS BEAMLINE X12C
37422.574
D-alanyl-D-alanine carboxypeptidase
3.4.16.4
DD-PEPTIDASE
1
nat
polymer
429.468
(2S,5R,6R)-6-{[(6R)-6-(GLYCYLAMINO)-7-OXIDO-7-OXOHEPTANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLATE
1
syn
non-polymer
92.094
GLYCEROL
3
syn
non-polymer
30.026
FORMYL GROUP
2
syn
non-polymer
18.015
water
473
nat
water
DD-peptidase, DD-carboxypeptidase
no
no
ADLPAPDDTGLQAVLHTALSQGAPGAMVRVDDNGTIHQLSEGVADRATGRAITTTDRFRVGSVTKSFSAVVLLQLVDEGK
LDLDASVNTYLPGLLPDDRITVRQVMSHRSGLYDYTNDMFAQTVPGFESVRNKVFSYQDLITLSLKHGVTNAPGAAYSYS
NTNFVVAGMLIEKLTGHSVATEYQNRIFTPLNLTDTFYVHPDTVIPGTHANGYLTPDEAGGALVDSTEQTVSWAQSAGAV
ISSTQDLDTFFSALMSGQLMSAAQLAQMQQWTTVNSTQGYGLGLRRRDLSCGISVYGHTGTVQGYYTYAFASKDGKRSVT
ALANTSNNVNVLNTMARTLESAFCGKPTT
ADLPAPDDTGLQAVLHTALSQGAPGAMVRVDDNGTIHQLSEGVADRATGRAITTTDRFRVGSVTKSFSAVVLLQLVDEGK
LDLDASVNTYLPGLLPDDRITVRQVMSHRSGLYDYTNDMFAQTVPGFESVRNKVFSYQDLITLSLKHGVTNAPGAAYSYS
NTNFVVAGMLIEKLTGHSVATEYQNRIFTPLNLTDTFYVHPDTVIPGTHANGYLTPDEAGGALVDSTEQTVSWAQSAGAV
ISSTQDLDTFFSALMSGQLMSAAQLAQMQQWTTVNSTQGYGLGLRRRDLSCGISVYGHTGTVQGYYTYAFASKDGKRSVT
ALANTSNNVNVLNTMARTLESAFCGKPTT
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Streptomyces
sample
31952
Streptomyces sp.
R61
1
1.96
46.49
VAPOR DIFFUSION, HANGING DROP
6.80
20% PEG 8000, 50mM Sodium Phosphate, pH 6.80, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
software
struct_conn
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Version format compliance
Source and taxonomy
Version format compliance
Data collection
Derived calculations
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2004-07-13
1
1
2008-04-29
1
2
2011-07-13
1
3
2019-07-24
1
4
2023-08-16
_software.classification
_software.name
_struct_conn.pdbx_leaving_atom_flag
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal Structure Of Phosphonate-Inhibited D-Ala-D-Ala Peptidase Reveals An Analog Of A Tetrahedral Transition State
Michaelis Complex Of Streptomyces R61 Dd-Peptidase With A Specific Peptidoglycan Substrate Fragment
Complex Of Streptomyces R61 Dd-Peptidase With The Products Of A Specific Peptidoglycan Substrate Fragment
MISSING LIGAND ATOMS
Atom O for ligand FOR missing due to loss-of-water
reaction with CE1 of TYR159, NZ of LYS65, and NE2
of HIS108, resulting in covalent bond formation
from C FOR600 to CE1 TYR159 and NZ LYS65, and
from C FOR601 to NE2 HIS108 and NZ LYS65
RCSB
Y
RCSB
2003-06-30
REL
HEL
(2S,5R,6R)-6-{[(6R)-6-(GLYCYLAMINO)-7-OXIDO-7-OXOHEPTANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLATE
GOL
GLYCEROL
FOR
FORMYL GROUP
HOH
water
3PTE
PDB
experimental model
HEL
400
2
HEL
HEL
400
A
GOL
500
3
GOL
GOL
500
A
GOL
501
3
GOL
GOL
501
A
GOL
502
3
GOL
GOL
502
A
FOR
600
4
FOR
FOR
600
A
FOR
601
4
FOR
FOR
601
A
HOH
2001
5
HOH
HOH
2001
A
HOH
2002
5
HOH
HOH
2002
A
HOH
2003
5
HOH
HOH
2003
A
HOH
2004
5
HOH
HOH
2004
A
HOH
2005
5
HOH
HOH
2005
A
HOH
2006
5
HOH
HOH
2006
A
HOH
2007
5
HOH
HOH
2007
A
HOH
2008
5
HOH
HOH
2008
A
HOH
2009
5
HOH
HOH
2009
A
HOH
2010
5
HOH
HOH
2010
A
HOH
2011
5
HOH
HOH
2011
A
HOH
2012
5
HOH
HOH
2012
A
HOH
2013
5
HOH
HOH
2013
A
HOH
2014
5
HOH
HOH
2014
A
HOH
2015
5
HOH
HOH
2015
A
HOH
2016
5
HOH
HOH
2016
A
HOH
2017
5
HOH
HOH
2017
A
HOH
2018
5
HOH
HOH
2018
A
HOH
2019
5
HOH
HOH
2019
A
HOH
2020
5
HOH
HOH
2020
A
HOH
2021
5
HOH
HOH
2021
A
HOH
2022
5
HOH
HOH
2022
A
HOH
2023
5
HOH
HOH
2023
A
HOH
2024
5
HOH
HOH
2024
A
HOH
2025
5
HOH
HOH
2025
A
HOH
2026
5
HOH
HOH
2026
A
HOH
2027
5
HOH
HOH
2027
A
HOH
2028
5
HOH
HOH
2028
A
HOH
2029
5
HOH
HOH
2029
A
HOH
2030
5
HOH
HOH
2030
A
HOH
2031
5
HOH
HOH
2031
A
HOH
2032
5
HOH
HOH
2032
A
HOH
2033
5
HOH
HOH
2033
A
HOH
2034
5
HOH
HOH
2034
A
HOH
2035
5
HOH
HOH
2035
A
HOH
2036
5
HOH
HOH
2036
A
HOH
2037
5
HOH
HOH
2037
A
HOH
2038
5
HOH
HOH
2038
A
HOH
2039
5
HOH
HOH
2039
A
HOH
2040
5
HOH
HOH
2040
A
HOH
2041
5
HOH
HOH
2041
A
HOH
2042
5
HOH
HOH
2042
A
HOH
2043
5
HOH
HOH
2043
A
HOH
2044
5
HOH
HOH
2044
A
HOH
2045
5
HOH
HOH
2045
A
HOH
2046
5
HOH
HOH
2046
A
HOH
2047
5
HOH
HOH
2047
A
HOH
2048
5
HOH
HOH
2048
A
HOH
2049
5
HOH
HOH
2049
A
HOH
2050
5
HOH
HOH
2050
A
HOH
2051
5
HOH
HOH
2051
A
HOH
2052
5
HOH
HOH
2052
A
HOH
2053
5
HOH
HOH
2053
A
HOH
2054
5
HOH
HOH
2054
A
HOH
2055
5
HOH
HOH
2055
A
HOH
2056
5
HOH
HOH
2056
A
HOH
2057
5
HOH
HOH
2057
A
HOH
2058
5
HOH
HOH
2058
A
HOH
2059
5
HOH
HOH
2059
A
HOH
2060
5
HOH
HOH
2060
A
HOH
2061
5
HOH
HOH
2061
A
HOH
2062
5
HOH
HOH
2062
A
HOH
2063
5
HOH
HOH
2063
A
HOH
2064
5
HOH
HOH
2064
A
HOH
2065
5
HOH
HOH
2065
A
HOH
2066
5
HOH
HOH
2066
A
HOH
2067
5
HOH
HOH
2067
A
HOH
2068
5
HOH
HOH
2068
A
HOH
2069
5
HOH
HOH
2069
A
HOH
2070
5
HOH
HOH
2070
A
HOH
2071
5
HOH
HOH
2071
A
HOH
2072
5
HOH
HOH
2072
A
HOH
2073
5
HOH
HOH
2073
A
HOH
2074
5
HOH
HOH
2074
A
HOH
2075
5
HOH
HOH
2075
A
HOH
2076
5
HOH
HOH
2076
A
HOH
2077
5
HOH
HOH
2077
A
HOH
2078
5
HOH
HOH
2078
A
HOH
2079
5
HOH
HOH
2079
A
HOH
2080
5
HOH
HOH
2080
A
HOH
2081
5
HOH
HOH
2081
A
HOH
2082
5
HOH
HOH
2082
A
HOH
2083
5
HOH
HOH
2083
A
HOH
2084
5
HOH
HOH
2084
A
HOH
2085
5
HOH
HOH
2085
A
HOH
2086
5
HOH
HOH
2086
A
HOH
2087
5
HOH
HOH
2087
A
HOH
2088
5
HOH
HOH
2088
A
HOH
2089
5
HOH
HOH
2089
A
HOH
2090
5
HOH
HOH
2090
A
HOH
2091
5
HOH
HOH
2091
A
HOH
2092
5
HOH
HOH
2092
A
HOH
2093
5
HOH
HOH
2093
A
HOH
2094
5
HOH
HOH
2094
A
HOH
2095
5
HOH
HOH
2095
A
HOH
2096
5
HOH
HOH
2096
A
HOH
2097
5
HOH
HOH
2097
A
HOH
2098
5
HOH
HOH
2098
A
HOH
2099
5
HOH
HOH
2099
A
HOH
2100
5
HOH
HOH
2100
A
HOH
2101
5
HOH
HOH
2101
A
HOH
2102
5
HOH
HOH
2102
A
HOH
2103
5
HOH
HOH
2103
A
HOH
2104
5
HOH
HOH
2104
A
HOH
2105
5
HOH
HOH
2105
A
HOH
2106
5
HOH
HOH
2106
A
HOH
2107
5
HOH
HOH
2107
A
HOH
2108
5
HOH
HOH
2108
A
HOH
2109
5
HOH
HOH
2109
A
HOH
2110
5
HOH
HOH
2110
A
HOH
2111
5
HOH
HOH
2111
A
HOH
2112
5
HOH
HOH
2112
A
HOH
2113
5
HOH
HOH
2113
A
HOH
2114
5
HOH
HOH
2114
A
HOH
2115
5
HOH
HOH
2115
A
HOH
2116
5
HOH
HOH
2116
A
HOH
2117
5
HOH
HOH
2117
A
HOH
2118
5
HOH
HOH
2118
A
HOH
2119
5
HOH
HOH
2119
A
HOH
2120
5
HOH
HOH
2120
A
HOH
2121
5
HOH
HOH
2121
A
HOH
2122
5
HOH
HOH
2122
A
HOH
2123
5
HOH
HOH
2123
A
HOH
2124
5
HOH
HOH
2124
A
HOH
2125
5
HOH
HOH
2125
A
HOH
2126
5
HOH
HOH
2126
A
HOH
2127
5
HOH
HOH
2127
A
HOH
2128
5
HOH
HOH
2128
A
HOH
2129
5
HOH
HOH
2129
A
HOH
2130
5
HOH
HOH
2130
A
HOH
2131
5
HOH
HOH
2131
A
HOH
2132
5
HOH
HOH
2132
A
HOH
2133
5
HOH
HOH
2133
A
HOH
2134
5
HOH
HOH
2134
A
HOH
2135
5
HOH
HOH
2135
A
HOH
2136
5
HOH
HOH
2136
A
HOH
2137
5
HOH
HOH
2137
A
HOH
2138
5
HOH
HOH
2138
A
HOH
2139
5
HOH
HOH
2139
A
HOH
2140
5
HOH
HOH
2140
A
HOH
2141
5
HOH
HOH
2141
A
HOH
2142
5
HOH
HOH
2142
A
HOH
2143
5
HOH
HOH
2143
A
HOH
2144
5
HOH
HOH
2144
A
HOH
2145
5
HOH
HOH
2145
A
HOH
2146
5
HOH
HOH
2146
A
HOH
2147
5
HOH
HOH
2147
A
HOH
2148
5
HOH
HOH
2148
A
HOH
2149
5
HOH
HOH
2149
A
HOH
2150
5
HOH
HOH
2150
A
HOH
2151
5
HOH
HOH
2151
A
HOH
2152
5
HOH
HOH
2152
A
HOH
2153
5
HOH
HOH
2153
A
HOH
2154
5
HOH
HOH
2154
A
HOH
2155
5
HOH
HOH
2155
A
HOH
2156
5
HOH
HOH
2156
A
HOH
2157
5
HOH
HOH
2157
A
HOH
2158
5
HOH
HOH
2158
A
HOH
2159
5
HOH
HOH
2159
A
HOH
2160
5
HOH
HOH
2160
A
HOH
2161
5
HOH
HOH
2161
A
HOH
2162
5
HOH
HOH
2162
A
HOH
2163
5
HOH
HOH
2163
A
HOH
2164
5
HOH
HOH
2164
A
HOH
2165
5
HOH
HOH
2165
A
HOH
2166
5
HOH
HOH
2166
A
HOH
2167
5
HOH
HOH
2167
A
HOH
2168
5
HOH
HOH
2168
A
HOH
2169
5
HOH
HOH
2169
A
HOH
2170
5
HOH
HOH
2170
A
HOH
2171
5
HOH
HOH
2171
A
HOH
2172
5
HOH
HOH
2172
A
HOH
2173
5
HOH
HOH
2173
A
HOH
2174
5
HOH
HOH
2174
A
HOH
2175
5
HOH
HOH
2175
A
HOH
2176
5
HOH
HOH
2176
A
HOH
2177
5
HOH
HOH
2177
A
HOH
2178
5
HOH
HOH
2178
A
HOH
2179
5
HOH
HOH
2179
A
HOH
2180
5
HOH
HOH
2180
A
HOH
2181
5
HOH
HOH
2181
A
HOH
2182
5
HOH
HOH
2182
A
HOH
2183
5
HOH
HOH
2183
A
HOH
2184
5
HOH
HOH
2184
A
HOH
2185
5
HOH
HOH
2185
A
HOH
2186
5
HOH
HOH
2186
A
HOH
2187
5
HOH
HOH
2187
A
HOH
2188
5
HOH
HOH
2188
A
HOH
2189
5
HOH
HOH
2189
A
HOH
2190
5
HOH
HOH
2190
A
HOH
2191
5
HOH
HOH
2191
A
HOH
2192
5
HOH
HOH
2192
A
HOH
2193
5
HOH
HOH
2193
A
HOH
2194
5
HOH
HOH
2194
A
HOH
2195
5
HOH
HOH
2195
A
HOH
2196
5
HOH
HOH
2196
A
HOH
2197
5
HOH
HOH
2197
A
HOH
2198
5
HOH
HOH
2198
A
HOH
2199
5
HOH
HOH
2199
A
HOH
2200
5
HOH
HOH
2200
A
HOH
2201
5
HOH
HOH
2201
A
HOH
2202
5
HOH
HOH
2202
A
HOH
2203
5
HOH
HOH
2203
A
HOH
2204
5
HOH
HOH
2204
A
HOH
2205
5
HOH
HOH
2205
A
HOH
2206
5
HOH
HOH
2206
A
HOH
2207
5
HOH
HOH
2207
A
HOH
2208
5
HOH
HOH
2208
A
HOH
2209
5
HOH
HOH
2209
A
HOH
2210
5
HOH
HOH
2210
A
HOH
2211
5
HOH
HOH
2211
A
HOH
2212
5
HOH
HOH
2212
A
HOH
2213
5
HOH
HOH
2213
A
HOH
2214
5
HOH
HOH
2214
A
HOH
2215
5
HOH
HOH
2215
A
HOH
2216
5
HOH
HOH
2216
A
HOH
2217
5
HOH
HOH
2217
A
HOH
2218
5
HOH
HOH
2218
A
HOH
2219
5
HOH
HOH
2219
A
HOH
2220
5
HOH
HOH
2220
A
HOH
2221
5
HOH
HOH
2221
A
HOH
2222
5
HOH
HOH
2222
A
HOH
2223
5
HOH
HOH
2223
A
HOH
2224
5
HOH
HOH
2224
A
HOH
2225
5
HOH
HOH
2225
A
HOH
2226
5
HOH
HOH
2226
A
HOH
2227
5
HOH
HOH
2227
A
HOH
2228
5
HOH
HOH
2228
A
HOH
2229
5
HOH
HOH
2229
A
HOH
2230
5
HOH
HOH
2230
A
HOH
2231
5
HOH
HOH
2231
A
HOH
2232
5
HOH
HOH
2232
A
HOH
2233
5
HOH
HOH
2233
A
HOH
2234
5
HOH
HOH
2234
A
HOH
2235
5
HOH
HOH
2235
A
HOH
2236
5
HOH
HOH
2236
A
HOH
2237
5
HOH
HOH
2237
A
HOH
2238
5
HOH
HOH
2238
A
HOH
2239
5
HOH
HOH
2239
A
HOH
2240
5
HOH
HOH
2240
A
HOH
2241
5
HOH
HOH
2241
A
HOH
2242
5
HOH
HOH
2242
A
HOH
2243
5
HOH
HOH
2243
A
HOH
2244
5
HOH
HOH
2244
A
HOH
2245
5
HOH
HOH
2245
A
HOH
2246
5
HOH
HOH
2246
A
HOH
2247
5
HOH
HOH
2247
A
HOH
2248
5
HOH
HOH
2248
A
HOH
2249
5
HOH
HOH
2249
A
HOH
2250
5
HOH
HOH
2250
A
HOH
2251
5
HOH
HOH
2251
A
HOH
2252
5
HOH
HOH
2252
A
HOH
2253
5
HOH
HOH
2253
A
HOH
2254
5
HOH
HOH
2254
A
HOH
2255
5
HOH
HOH
2255
A
HOH
2256
5
HOH
HOH
2256
A
HOH
2257
5
HOH
HOH
2257
A
HOH
2258
5
HOH
HOH
2258
A
HOH
2259
5
HOH
HOH
2259
A
HOH
2260
5
HOH
HOH
2260
A
HOH
2261
5
HOH
HOH
2261
A
HOH
2262
5
HOH
HOH
2262
A
HOH
2263
5
HOH
HOH
2263
A
HOH
2264
5
HOH
HOH
2264
A
HOH
2265
5
HOH
HOH
2265
A
HOH
2266
5
HOH
HOH
2266
A
HOH
2267
5
HOH
HOH
2267
A
HOH
2268
5
HOH
HOH
2268
A
HOH
2269
5
HOH
HOH
2269
A
HOH
2270
5
HOH
HOH
2270
A
HOH
2271
5
HOH
HOH
2271
A
HOH
2272
5
HOH
HOH
2272
A
HOH
2273
5
HOH
HOH
2273
A
HOH
2274
5
HOH
HOH
2274
A
HOH
2275
5
HOH
HOH
2275
A
HOH
2276
5
HOH
HOH
2276
A
HOH
2277
5
HOH
HOH
2277
A
HOH
2278
5
HOH
HOH
2278
A
HOH
2279
5
HOH
HOH
2279
A
HOH
2280
5
HOH
HOH
2280
A
HOH
2281
5
HOH
HOH
2281
A
HOH
2282
5
HOH
HOH
2282
A
HOH
2283
5
HOH
HOH
2283
A
HOH
2284
5
HOH
HOH
2284
A
HOH
2285
5
HOH
HOH
2285
A
HOH
2286
5
HOH
HOH
2286
A
HOH
2287
5
HOH
HOH
2287
A
HOH
2288
5
HOH
HOH
2288
A
HOH
2289
5
HOH
HOH
2289
A
HOH
2290
5
HOH
HOH
2290
A
HOH
2291
5
HOH
HOH
2291
A
HOH
2292
5
HOH
HOH
2292
A
HOH
2293
5
HOH
HOH
2293
A
HOH
2294
5
HOH
HOH
2294
A
HOH
2295
5
HOH
HOH
2295
A
HOH
2296
5
HOH
HOH
2296
A
HOH
2297
5
HOH
HOH
2297
A
HOH
2298
5
HOH
HOH
2298
A
HOH
2299
5
HOH
HOH
2299
A
HOH
2300
5
HOH
HOH
2300
A
HOH
2301
5
HOH
HOH
2301
A
HOH
2302
5
HOH
HOH
2302
A
HOH
2303
5
HOH
HOH
2303
A
HOH
2304
5
HOH
HOH
2304
A
HOH
2305
5
HOH
HOH
2305
A
HOH
2306
5
HOH
HOH
2306
A
HOH
2307
5
HOH
HOH
2307
A
HOH
2308
5
HOH
HOH
2308
A
HOH
2309
5
HOH
HOH
2309
A
HOH
2310
5
HOH
HOH
2310
A
HOH
2311
5
HOH
HOH
2311
A
HOH
2312
5
HOH
HOH
2312
A
HOH
2313
5
HOH
HOH
2313
A
HOH
2314
5
HOH
HOH
2314
A
HOH
2316
5
HOH
HOH
2316
A
HOH
2317
5
HOH
HOH
2317
A
HOH
2318
5
HOH
HOH
2318
A
HOH
2319
5
HOH
HOH
2319
A
HOH
2320
5
HOH
HOH
2320
A
HOH
2321
5
HOH
HOH
2321
A
HOH
2322
5
HOH
HOH
2322
A
HOH
2323
5
HOH
HOH
2323
A
HOH
2324
5
HOH
HOH
2324
A
HOH
2325
5
HOH
HOH
2325
A
HOH
2326
5
HOH
HOH
2326
A
HOH
2327
5
HOH
HOH
2327
A
HOH
2328
5
HOH
HOH
2328
A
HOH
2329
5
HOH
HOH
2329
A
HOH
2330
5
HOH
HOH
2330
A
HOH
2331
5
HOH
HOH
2331
A
HOH
2332
5
HOH
HOH
2332
A
HOH
2333
5
HOH
HOH
2333
A
HOH
2334
5
HOH
HOH
2334
A
HOH
2335
5
HOH
HOH
2335
A
HOH
2336
5
HOH
HOH
2336
A
HOH
2337
5
HOH
HOH
2337
A
HOH
2338
5
HOH
HOH
2338
A
HOH
2339
5
HOH
HOH
2339
A
HOH
2340
5
HOH
HOH
2340
A
HOH
2341
5
HOH
HOH
2341
A
HOH
2342
5
HOH
HOH
2342
A
HOH
2343
5
HOH
HOH
2343
A
HOH
2344
5
HOH
HOH
2344
A
HOH
2345
5
HOH
HOH
2345
A
HOH
2346
5
HOH
HOH
2346
A
HOH
2347
5
HOH
HOH
2347
A
HOH
2348
5
HOH
HOH
2348
A
HOH
2349
5
HOH
HOH
2349
A
HOH
2350
5
HOH
HOH
2350
A
HOH
2351
5
HOH
HOH
2351
A
HOH
2352
5
HOH
HOH
2352
A
HOH
2353
5
HOH
HOH
2353
A
HOH
2354
5
HOH
HOH
2354
A
HOH
2355
5
HOH
HOH
2355
A
HOH
2356
5
HOH
HOH
2356
A
HOH
2357
5
HOH
HOH
2357
A
HOH
2358
5
HOH
HOH
2358
A
HOH
2359
5
HOH
HOH
2359
A
HOH
2360
5
HOH
HOH
2360
A
HOH
2361
5
HOH
HOH
2361
A
HOH
2362
5
HOH
HOH
2362
A
HOH
2363
5
HOH
HOH
2363
A
HOH
2364
5
HOH
HOH
2364
A
HOH
2365
5
HOH
HOH
2365
A
HOH
2366
5
HOH
HOH
2366
A
HOH
2367
5
HOH
HOH
2367
A
HOH
2368
5
HOH
HOH
2368
A
HOH
2369
5
HOH
HOH
2369
A
HOH
2370
5
HOH
HOH
2370
A
HOH
2371
5
HOH
HOH
2371
A
HOH
2372
5
HOH
HOH
2372
A
HOH
2373
5
HOH
HOH
2373
A
HOH
2374
5
HOH
HOH
2374
A
HOH
2375
5
HOH
HOH
2375
A
HOH
2376
5
HOH
HOH
2376
A
HOH
2377
5
HOH
HOH
2377
A
HOH
2378
5
HOH
HOH
2378
A
HOH
2379
5
HOH
HOH
2379
A
HOH
2380
5
HOH
HOH
2380
A
HOH
2381
5
HOH
HOH
2381
A
HOH
2382
5
HOH
HOH
2382
A
HOH
2383
5
HOH
HOH
2383
A
HOH
2384
5
HOH
HOH
2384
A
HOH
2385
5
HOH
HOH
2385
A
HOH
2386
5
HOH
HOH
2386
A
HOH
2387
5
HOH
HOH
2387
A
HOH
2388
5
HOH
HOH
2388
A
HOH
2389
5
HOH
HOH
2389
A
HOH
2390
5
HOH
HOH
2390
A
HOH
2391
5
HOH
HOH
2391
A
HOH
2392
5
HOH
HOH
2392
A
HOH
2393
5
HOH
HOH
2393
A
HOH
2394
5
HOH
HOH
2394
A
HOH
2395
5
HOH
HOH
2395
A
HOH
2396
5
HOH
HOH
2396
A
HOH
2397
5
HOH
HOH
2397
A
HOH
2398
5
HOH
HOH
2398
A
HOH
2399
5
HOH
HOH
2399
A
HOH
2400
5
HOH
HOH
2400
A
HOH
2401
5
HOH
HOH
2401
A
HOH
2402
5
HOH
HOH
2402
A
HOH
2403
5
HOH
HOH
2403
A
HOH
2404
5
HOH
HOH
2404
A
HOH
2405
5
HOH
HOH
2405
A
HOH
2406
5
HOH
HOH
2406
A
HOH
2407
5
HOH
HOH
2407
A
HOH
2408
5
HOH
HOH
2408
A
HOH
2409
5
HOH
HOH
2409
A
HOH
2410
5
HOH
HOH
2410
A
HOH
2411
5
HOH
HOH
2411
A
HOH
2412
5
HOH
HOH
2412
A
HOH
2413
5
HOH
HOH
2413
A
HOH
2414
5
HOH
HOH
2414
A
HOH
2415
5
HOH
HOH
2415
A
HOH
2416
5
HOH
HOH
2416
A
HOH
2417
5
HOH
HOH
2417
A
HOH
2418
5
HOH
HOH
2418
A
HOH
2419
5
HOH
HOH
2419
A
HOH
2420
5
HOH
HOH
2420
A
HOH
2421
5
HOH
HOH
2421
A
HOH
2422
5
HOH
HOH
2422
A
HOH
2423
5
HOH
HOH
2423
A
HOH
2424
5
HOH
HOH
2424
A
HOH
2425
5
HOH
HOH
2425
A
HOH
2426
5
HOH
HOH
2426
A
HOH
2427
5
HOH
HOH
2427
A
HOH
2428
5
HOH
HOH
2428
A
HOH
2429
5
HOH
HOH
2429
A
HOH
2430
5
HOH
HOH
2430
A
HOH
2431
5
HOH
HOH
2431
A
HOH
2432
5
HOH
HOH
2432
A
HOH
2433
5
HOH
HOH
2433
A
HOH
2434
5
HOH
HOH
2434
A
HOH
2435
5
HOH
HOH
2435
A
HOH
2436
5
HOH
HOH
2436
A
HOH
2437
5
HOH
HOH
2437
A
HOH
2438
5
HOH
HOH
2438
A
HOH
2439
5
HOH
HOH
2439
A
HOH
2440
5
HOH
HOH
2440
A
HOH
2441
5
HOH
HOH
2441
A
HOH
2442
5
HOH
HOH
2442
A
HOH
2443
5
HOH
HOH
2443
A
HOH
2444
5
HOH
HOH
2444
A
HOH
2445
5
HOH
HOH
2445
A
HOH
2446
5
HOH
HOH
2446
A
HOH
2447
5
HOH
HOH
2447
A
HOH
2448
5
HOH
HOH
2448
A
HOH
2449
5
HOH
HOH
2449
A
HOH
2450
5
HOH
HOH
2450
A
HOH
2451
5
HOH
HOH
2451
A
HOH
2452
5
HOH
HOH
2452
A
HOH
2453
5
HOH
HOH
2453
A
HOH
2454
5
HOH
HOH
2454
A
HOH
2455
5
HOH
HOH
2455
A
HOH
2456
5
HOH
HOH
2456
A
HOH
2457
5
HOH
HOH
2457
A
HOH
2458
5
HOH
HOH
2458
A
HOH
2459
5
HOH
HOH
2459
A
HOH
2460
5
HOH
HOH
2460
A
HOH
2461
5
HOH
HOH
2461
A
HOH
2462
5
HOH
HOH
2462
A
HOH
2463
5
HOH
HOH
2463
A
HOH
2464
5
HOH
HOH
2464
A
HOH
2465
5
HOH
HOH
2465
A
HOH
2466
5
HOH
HOH
2466
A
HOH
2467
5
HOH
HOH
2467
A
HOH
2468
5
HOH
HOH
2468
A
HOH
2469
5
HOH
HOH
2469
A
HOH
2470
5
HOH
HOH
2470
A
HOH
2471
5
HOH
HOH
2471
A
HOH
2472
5
HOH
HOH
2472
A
HOH
2473
5
HOH
HOH
2473
A
HOH
2548
5
HOH
HOH
2548
A
n
1
1
A
n
2
2
A
LEU
3
n
3
LEU
3
A
PRO
4
n
4
PRO
4
A
ALA
5
n
5
ALA
5
A
PRO
6
n
6
PRO
6
A
ASP
7
n
7
ASP
7
A
ASP
8
n
8
ASP
8
A
THR
9
n
9
THR
9
A
GLY
10
n
10
GLY
10
A
LEU
11
n
11
LEU
11
A
GLN
12
n
12
GLN
12
A
ALA
13
n
13
ALA
13
A
VAL
14
n
14
VAL
14
A
LEU
15
n
15
LEU
15
A
HIS
16
n
16
HIS
16
A
THR
17
n
17
THR
17
A
ALA
18
n
18
ALA
18
A
LEU
19
n
19
LEU
19
A
SER
20
n
20
SER
20
A
GLN
21
n
21
GLN
21
A
GLY
22
n
22
GLY
22
A
ALA
23
n
23
ALA
23
A
PRO
24
n
24
PRO
24
A
GLY
25
n
25
GLY
25
A
ALA
26
n
26
ALA
26
A
MET
27
n
27
MET
27
A
VAL
28
n
28
VAL
28
A
ARG
29
n
29
ARG
29
A
VAL
30
n
30
VAL
30
A
ASP
31
n
31
ASP
31
A
ASP
32
n
32
ASP
32
A
ASN
33
n
33
ASN
33
A
GLY
34
n
34
GLY
34
A
THR
35
n
35
THR
35
A
ILE
36
n
36
ILE
36
A
HIS
37
n
37
HIS
37
A
GLN
38
n
38
GLN
38
A
LEU
39
n
39
LEU
39
A
SER
40
n
40
SER
40
A
GLU
41
n
41
GLU
41
A
GLY
42
n
42
GLY
42
A
VAL
43
n
43
VAL
43
A
ALA
44
n
44
ALA
44
A
ASP
45
n
45
ASP
45
A
ARG
46
n
46
ARG
46
A
ALA
47
n
47
ALA
47
A
THR
48
n
48
THR
48
A
GLY
49
n
49
GLY
49
A
ARG
50
n
50
ARG
50
A
ALA
51
n
51
ALA
51
A
ILE
52
n
52
ILE
52
A
THR
53
n
53
THR
53
A
THR
54
n
54
THR
54
A
THR
55
n
55
THR
55
A
ASP
56
n
56
ASP
56
A
ARG
57
n
57
ARG
57
A
PHE
58
n
58
PHE
58
A
ARG
59
n
59
ARG
59
A
VAL
60
n
60
VAL
60
A
GLY
61
n
61
GLY
61
A
SER
62
n
62
SER
62
A
VAL
63
n
63
VAL
63
A
THR
64
n
64
THR
64
A
LYS
65
n
65
LYS
65
A
SER
66
n
66
SER
66
A
PHE
67
n
67
PHE
67
A
SER
68
n
68
SER
68
A
ALA
69
n
69
ALA
69
A
VAL
70
n
70
VAL
70
A
VAL
71
n
71
VAL
71
A
LEU
72
n
72
LEU
72
A
LEU
73
n
73
LEU
73
A
GLN
74
n
74
GLN
74
A
LEU
75
n
75
LEU
75
A
VAL
76
n
76
VAL
76
A
ASP
77
n
77
ASP
77
A
GLU
78
n
78
GLU
78
A
GLY
79
n
79
GLY
79
A
LYS
80
n
80
LYS
80
A
LEU
81
n
81
LEU
81
A
ASP
82
n
82
ASP
82
A
LEU
83
n
83
LEU
83
A
ASP
84
n
84
ASP
84
A
ALA
85
n
85
ALA
85
A
SER
86
n
86
SER
86
A
VAL
87
n
87
VAL
87
A
ASN
88
n
88
ASN
88
A
THR
89
n
89
THR
89
A
TYR
90
n
90
TYR
90
A
LEU
91
n
91
LEU
91
A
PRO
92
n
92
PRO
92
A
GLY
93
n
93
GLY
93
A
LEU
94
n
94
LEU
94
A
LEU
95
n
95
LEU
95
A
PRO
96
n
96
PRO
96
A
ASP
97
n
97
ASP
97
A
ASP
98
n
98
ASP
98
A
ARG
99
n
99
ARG
99
A
ILE
100
n
100
ILE
100
A
THR
101
n
101
THR
101
A
VAL
102
n
102
VAL
102
A
ARG
103
n
103
ARG
103
A
GLN
104
n
104
GLN
104
A
VAL
105
n
105
VAL
105
A
MET
106
n
106
MET
106
A
SER
107
n
107
SER
107
A
HIS
108
n
108
HIS
108
A
ARG
109
n
109
ARG
109
A
SER
110
n
110
SER
110
A
GLY
111
n
111
GLY
111
A
LEU
112
n
112
LEU
112
A
TYR
113
n
113
TYR
113
A
ASP
114
n
114
ASP
114
A
TYR
115
n
115
TYR
115
A
THR
116
n
116
THR
116
A
ASN
117
n
117
ASN
117
A
ASP
118
n
118
ASP
118
A
MET
119
n
119
MET
119
A
PHE
120
n
120
PHE
120
A
ALA
121
n
121
ALA
121
A
GLN
122
n
122
GLN
122
A
THR
123
n
123
THR
123
A
VAL
124
n
124
VAL
124
A
PRO
125
n
125
PRO
125
A
GLY
126
n
126
GLY
126
A
PHE
127
n
127
PHE
127
A
GLU
128
n
128
GLU
128
A
SER
129
n
129
SER
129
A
VAL
130
n
130
VAL
130
A
ARG
131
n
131
ARG
131
A
ASN
132
n
132
ASN
132
A
LYS
133
n
133
LYS
133
A
VAL
134
n
134
VAL
134
A
PHE
135
n
135
PHE
135
A
SER
136
n
136
SER
136
A
TYR
137
n
137
TYR
137
A
GLN
138
n
138
GLN
138
A
ASP
139
n
139
ASP
139
A
LEU
140
n
140
LEU
140
A
ILE
141
n
141
ILE
141
A
THR
142
n
142
THR
142
A
LEU
143
n
143
LEU
143
A
SER
144
n
144
SER
144
A
LEU
145
n
145
LEU
145
A
LYS
146
n
146
LYS
146
A
HIS
147
n
147
HIS
147
A
GLY
148
n
148
GLY
148
A
VAL
149
n
149
VAL
149
A
THR
150
n
150
THR
150
A
ASN
151
n
151
ASN
151
A
ALA
152
n
152
ALA
152
A
PRO
153
n
153
PRO
153
A
GLY
154
n
154
GLY
154
A
ALA
155
n
155
ALA
155
A
ALA
156
n
156
ALA
156
A
TYR
157
n
157
TYR
157
A
SER
158
n
158
SER
158
A
TYR
159
n
159
TYR
159
A
SER
160
n
160
SER
160
A
ASN
161
n
161
ASN
161
A
THR
162
n
162
THR
162
A
ASN
163
n
163
ASN
163
A
PHE
164
n
164
PHE
164
A
VAL
165
n
165
VAL
165
A
VAL
166
n
166
VAL
166
A
ALA
167
n
167
ALA
167
A
GLY
168
n
168
GLY
168
A
MET
169
n
169
MET
169
A
LEU
170
n
170
LEU
170
A
ILE
171
n
171
ILE
171
A
GLU
172
n
172
GLU
172
A
LYS
173
n
173
LYS
173
A
LEU
174
n
174
LEU
174
A
THR
175
n
175
THR
175
A
GLY
176
n
176
GLY
176
A
HIS
177
n
177
HIS
177
A
SER
178
n
178
SER
178
A
VAL
179
n
179
VAL
179
A
ALA
180
n
180
ALA
180
A
THR
181
n
181
THR
181
A
GLU
182
n
182
GLU
182
A
TYR
183
n
183
TYR
183
A
GLN
184
n
184
GLN
184
A
ASN
185
n
185
ASN
185
A
ARG
186
n
186
ARG
186
A
ILE
187
n
187
ILE
187
A
PHE
188
n
188
PHE
188
A
THR
189
n
189
THR
189
A
PRO
190
n
190
PRO
190
A
LEU
191
n
191
LEU
191
A
ASN
192
n
192
ASN
192
A
LEU
193
n
193
LEU
193
A
THR
194
n
194
THR
194
A
ASP
195
n
195
ASP
195
A
THR
196
n
196
THR
196
A
PHE
197
n
197
PHE
197
A
TYR
198
n
198
TYR
198
A
VAL
199
n
199
VAL
199
A
HIS
200
n
200
HIS
200
A
PRO
201
n
201
PRO
201
A
ASP
202
n
202
ASP
202
A
THR
203
n
203
THR
203
A
VAL
204
n
204
VAL
204
A
ILE
205
n
205
ILE
205
A
PRO
206
n
206
PRO
206
A
GLY
207
n
207
GLY
207
A
THR
208
n
208
THR
208
A
HIS
209
n
209
HIS
209
A
ALA
210
n
210
ALA
210
A
ASN
211
n
211
ASN
211
A
GLY
212
n
212
GLY
212
A
TYR
213
n
213
TYR
213
A
LEU
214
n
214
LEU
214
A
THR
215
n
215
THR
215
A
PRO
216
n
216
PRO
216
A
ASP
217
n
217
ASP
217
A
GLU
218
n
218
GLU
218
A
ALA
219
n
219
ALA
219
A
GLY
220
n
220
GLY
220
A
GLY
221
n
221
GLY
221
A
ALA
222
n
222
ALA
222
A
LEU
223
n
223
LEU
223
A
VAL
224
n
224
VAL
224
A
ASP
225
n
225
ASP
225
A
SER
226
n
226
SER
226
A
THR
227
n
227
THR
227
A
GLU
228
n
228
GLU
228
A
GLN
229
n
229
GLN
229
A
THR
230
n
230
THR
230
A
VAL
231
n
231
VAL
231
A
SER
232
n
232
SER
232
A
TRP
233
n
233
TRP
233
A
ALA
234
n
234
ALA
234
A
GLN
235
n
235
GLN
235
A
SER
236
n
236
SER
236
A
ALA
237
n
237
ALA
237
A
GLY
238
n
238
GLY
238
A
ALA
239
n
239
ALA
239
A
VAL
240
n
240
VAL
240
A
ILE
241
n
241
ILE
241
A
SER
242
n
242
SER
242
A
SER
243
n
243
SER
243
A
THR
244
n
244
THR
244
A
GLN
245
n
245
GLN
245
A
ASP
246
n
246
ASP
246
A
LEU
247
n
247
LEU
247
A
ASP
248
n
248
ASP
248
A
THR
249
n
249
THR
249
A
PHE
250
n
250
PHE
250
A
PHE
251
n
251
PHE
251
A
SER
252
n
252
SER
252
A
ALA
253
n
253
ALA
253
A
LEU
254
n
254
LEU
254
A
MET
255
n
255
MET
255
A
SER
256
n
256
SER
256
A
GLY
257
n
257
GLY
257
A
GLN
258
n
258
GLN
258
A
LEU
259
n
259
LEU
259
A
MET
260
n
260
MET
260
A
SER
261
n
261
SER
261
A
ALA
262
n
262
ALA
262
A
ALA
263
n
263
ALA
263
A
GLN
264
n
264
GLN
264
A
LEU
265
n
265
LEU
265
A
ALA
266
n
266
ALA
266
A
GLN
267
n
267
GLN
267
A
MET
268
n
268
MET
268
A
GLN
269
n
269
GLN
269
A
GLN
270
n
270
GLN
270
A
TRP
271
n
271
TRP
271
A
THR
272
n
272
THR
272
A
THR
273
n
273
THR
273
A
VAL
274
n
274
VAL
274
A
ASN
275
n
275
ASN
275
A
SER
276
n
276
SER
276
A
THR
277
n
277
THR
277
A
GLN
278
n
278
GLN
278
A
GLY
279
n
279
GLY
279
A
TYR
280
n
280
TYR
280
A
GLY
281
n
281
GLY
281
A
LEU
282
n
282
LEU
282
A
GLY
283
n
283
GLY
283
A
LEU
284
n
284
LEU
284
A
ARG
285
n
285
ARG
285
A
ARG
286
n
286
ARG
286
A
ARG
287
n
287
ARG
287
A
ASP
288
n
288
ASP
288
A
LEU
289
n
289
LEU
289
A
SER
290
n
290
SER
290
A
CYS
291
n
291
CYS
291
A
GLY
292
n
292
GLY
292
A
ILE
293
n
293
ILE
293
A
SER
294
n
294
SER
294
A
VAL
295
n
295
VAL
295
A
TYR
296
n
296
TYR
296
A
GLY
297
n
297
GLY
297
A
HIS
298
n
298
HIS
298
A
THR
299
n
299
THR
299
A
GLY
300
n
300
GLY
300
A
THR
301
n
301
THR
301
A
VAL
302
n
302
VAL
302
A
GLN
303
n
303
GLN
303
A
GLY
304
n
304
GLY
304
A
TYR
305
n
305
TYR
305
A
TYR
306
n
306
TYR
306
A
THR
307
n
307
THR
307
A
TYR
308
n
308
TYR
308
A
ALA
309
n
309
ALA
309
A
PHE
310
n
310
PHE
310
A
ALA
311
n
311
ALA
311
A
SER
312
n
312
SER
312
A
LYS
313
n
313
LYS
313
A
ASP
314
n
314
ASP
314
A
GLY
315
n
315
GLY
315
A
LYS
316
n
316
LYS
316
A
ARG
317
n
317
ARG
317
A
SER
318
n
318
SER
318
A
VAL
319
n
319
VAL
319
A
THR
320
n
320
THR
320
A
ALA
321
n
321
ALA
321
A
LEU
322
n
322
LEU
322
A
ALA
323
n
323
ALA
323
A
ASN
324
n
324
ASN
324
A
THR
325
n
325
THR
325
A
SER
326
n
326
SER
326
A
ASN
327
n
327
ASN
327
A
ASN
328
n
328
ASN
328
A
VAL
329
n
329
VAL
329
A
ASN
330
n
330
ASN
330
A
VAL
331
n
331
VAL
331
A
LEU
332
n
332
LEU
332
A
ASN
333
n
333
ASN
333
A
THR
334
n
334
THR
334
A
MET
335
n
335
MET
335
A
ALA
336
n
336
ALA
336
A
ARG
337
n
337
ARG
337
A
THR
338
n
338
THR
338
A
LEU
339
n
339
LEU
339
A
GLU
340
n
340
GLU
340
A
SER
341
n
341
SER
341
A
ALA
342
n
342
ALA
342
A
PHE
343
n
343
PHE
343
A
CYS
344
n
344
CYS
344
A
GLY
345
n
345
GLY
345
A
LYS
346
n
346
LYS
346
A
PRO
347
n
347
PRO
347
A
n
348
348
A
n
349
349
A
0.117
0.1214
0.1115
0.1158
0.145
0.1514
4609
5125
5.0
5.0
91725
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
THR
35
A
O
THR
35
A
N
ASP
32
A
N
ASP
32
A
N
ASP
31
A
N
ASP
31
A
O
SER
318
A
O
SER
318
A
O
VAL
319
A
O
VAL
319
A
N
PHE
310
A
N
PHE
310
A
O
TYR
305
A
O
TYR
305
A
N
VAL
302
A
N
VAL
302
A
O
GLY
297
A
O
GLY
297
A
N
ARG
285
A
N
ARG
285
A
O
ARG
286
A
O
ARG
286
A
N
GLY
279
A
N
GLY
279
A
O
TYR
280
A
O
TYR
280
A
N
THR
272
A
N
THR
272
A
N
PHE
58
A
N
PHE
58
A
O
SER
242
A
O
SER
242
A
O
VAL
224
A
O
VAL
224
A
N
LEU
214
A
N
LEU
214
A
N
TYR
213
A
N
TYR
213
A
O
SER
326
A
O
SER
326
1
A
ALA
1
A
ALA
1
1
Y
1
A
ASP
2
A
ASP
2
1
Y
1
A
THR
348
A
THR
348
1
Y
1
A
THR
349
A
THR
349
1
Y
1
-3.97
0.50
120.30
116.33
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
50
50
50
N
1
6.15
0.90
118.30
124.45
A
A
A
CB
CG
OD1
ASP
ASP
ASP
97
97
97
N
1
-5.79
0.90
118.30
112.51
A
A
A
CB
CG
OD2
ASP
ASP
ASP
97
97
97
N
1
3.04
0.50
120.30
123.34
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
103
103
103
N
1
-4.91
0.60
121.00
116.09
A
A
A
CB
CG
CD2
TYR
TYR
TYR
137
137
137
A
A
A
N
1
4.33
0.60
121.00
125.33
A
A
A
CB
CG
CD2
TYR
TYR
TYR
137
137
137
B
B
B
N
1
5.90
0.60
121.00
126.90
A
A
A
CB
CG
CD1
TYR
TYR
TYR
137
137
137
A
A
A
N
1
7.99
0.60
121.00
128.99
A
A
A
CB
CG
CD2
TYR
TYR
TYR
159
159
159
N
1
-4.14
0.60
121.00
116.86
A
A
A
CB
CG
CD1
TYR
TYR
TYR
159
159
159
N
1
-4.78
0.70
120.80
116.02
A
A
A
CB
CG
CD2
PHE
PHE
PHE
188
188
188
N
1
4.44
0.60
121.00
125.44
A
A
A
CB
CG
CD2
TYR
TYR
TYR
280
280
280
N
1
5.30
0.50
120.30
125.60
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
286
286
286
N
1
-4.01
0.50
120.30
116.29
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
286
286
286
N
1
6.50
0.50
120.30
126.80
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
287
287
287
N
1
-4.56
0.50
120.30
115.74
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
287
287
287
N
1
-4.79
0.50
120.30
115.51
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
337
337
337
N
1
A
ILE
187
-134.19
-60.05
1
A
GLN
235
51.67
-118.56
1
A
ASN
324
-91.68
50.12
ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF) BY 0.039.
0.1514
0.1158
0.1214
0.1158
1.20
10.00
28578
5125
101939
91725
34599
5.0
94.8
RANDOM
1
FREE R
0.0
FOURIER SYNTHESIS
3PTE
ENGH AND HUBER
0.06
22
0.00
3056.50
1.20
10.00
473
3124
49
0
2602
0.032
0.031
0.000
0.0315
0.083
0.085
0.046
0.005
0.043
0.092
1.200
20.00
1PW1
104613
104613
0
2.0
0.057
1
40.4
7.7
96.6
0.221
1.20
1.24
6.2
1
4.4
93.0
refinement
SHELXL-97
data scaling
SCALEPACK
refinement
CNS
data reduction
DENZO
phasing
CNS
Non-Covalent Complex Of Streptomyces R61 DD-Peptidase With A Highly Specific Penicillin
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
5
N
N
A
ASP
7
A
ASP
7
HELX_P
A
GLN
21
A
GLN
21
1
1
15
A
VAL
63
A
VAL
63
HELX_P
A
GLU
78
A
GLU
78
1
2
16
A
SER
86
A
SER
86
HELX_P
A
LEU
91
A
LEU
91
1
3
6
A
THR
101
A
THR
101
HELX_P
A
SER
107
A
SER
107
1
4
7
A
TYR
115
A
TYR
115
HELX_P
A
PHE
120
A
PHE
120
1
5
6
A
GLN
122
A
GLN
122
HELX_P
A
ARG
131
A
ARG
131
1
6
10
A
SER
136
A
SER
136
HELX_P
A
LYS
146
A
LYS
146
1
7
11
A
SER
160
A
SER
160
HELX_P
A
GLY
176
A
GLY
176
1
8
17
A
SER
178
A
SER
178
HELX_P
A
ILE
187
A
ILE
187
1
9
10
A
ALA
234
A
ALA
234
HELX_P
A
GLY
238
A
GLY
238
5
10
5
A
SER
243
A
SER
243
HELX_P
A
SER
256
A
SER
256
1
11
14
A
SER
261
A
SER
261
HELX_P
A
GLN
269
A
GLN
269
1
12
9
A
ASN
328
A
ASN
328
HELX_P
A
CYS
344
A
CYS
344
1
13
17
disulf
2.082
A
CYS
291
A
SG
CYS
291
1_555
A
CYS
344
A
SG
CYS
344
1_555
covale
1.493
none
A
A
LYS
65
A
NZ
LYS
65
1_555
A
FOR
600
F
C
FOR
1_555
covale
1.440
none
A
A
LYS
65
A
NZ
LYS
65
1_555
A
FOR
601
G
C
FOR
1_555
covale
1.469
none
A
A
HIS
108
A
NE2
HIS
108
1_555
A
FOR
601
G
C
FOR
1_555
covale
1.520
none
A
A
TYR
159
A
CE1
TYR
159
1_555
A
FOR
600
F
C
FOR
1_555
HYDROLASE
BETA-LACTAM, ANTIBIOTICS, PENICILLIN BINDING PROTEIN, ENZYME, PEPTIDOGLYCAN, HYDROLASE
A
HIS
200
A
HIS
200
1
A
PRO
201
A
PRO
201
1.62
DAC_STRSR
UNP
1
32
P15555
ADLPAPDDTGLQAVLHTALSQGAPGAMVRVDDNGTIHQLSEGVADRATGRAITTTDRFRVGSVTKSFSAVVLLQLVDEGK
LDLDASVNTYLPGLLPDDRITVRQVMSHRSGLYDYTNDMFAQTVPGFESVRNKVFSYQDLITLSLKHGVTNAPGAAYSYS
NTNFVVAGMLIEKLTGHSVATEYQNRIFTPLNLTDTFYVHPDTVIPGTHANGYLTPDEAGGALVDSTEQTVSWAQSAGAV
ISSTQDLDTFFSALMSGQLMSAAQLAQMQQWTTVNSTQGYGLGLRRRDLSCGISVYGHTGTVQGYYTYAFASKDGKRSVT
ALANTSNNVNVLNTMARTLESAFCGKPTT
32
380
1PW1
1
349
P15555
A
1
1
349
8
2
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
THR
35
A
THR
35
A
GLY
42
A
GLY
42
A
GLY
25
A
GLY
25
A
ASP
32
A
ASP
32
A
ARG
317
A
ARG
317
A
ALA
323
A
ALA
323
A
TYR
305
A
TYR
305
A
ALA
311
A
ALA
311
A
SER
294
A
SER
294
A
VAL
302
A
VAL
302
A
ARG
285
A
ARG
285
A
ASP
288
A
ASP
288
A
GLN
278
A
GLN
278
A
TYR
280
A
TYR
280
A
THR
272
A
THR
272
A
ASN
275
A
ASN
275
A
PHE
58
A
PHE
58
A
ARG
59
A
ARG
59
A
ILE
241
A
ILE
241
A
SER
242
A
SER
242
A
VAL
224
A
VAL
224
A
ASP
225
A
ASP
225
A
TYR
213
A
TYR
213
A
LEU
214
A
LEU
214
A
THR
325
A
THR
325
A
SER
326
A
SER
326
BINDING SITE FOR RESIDUE HEL A 400
A
HEL
400
Software
21
BINDING SITE FOR RESIDUE GOL A 500
A
GOL
500
Software
11
BINDING SITE FOR RESIDUE GOL A 501
A
GOL
501
Software
12
BINDING SITE FOR RESIDUE GOL A 502
A
GOL
502
Software
9
BINDING SITE FOR RESIDUE FOR A 600
A
FOR
600
Software
6
BINDING SITE FOR RESIDUE FOR A 601
A
FOR
601
Software
5
A
SER
62
A
SER
62
21
1_555
A
PHE
120
A
PHE
120
21
1_555
A
THR
123
A
THR
123
21
1_555
A
TYR
159
A
TYR
159
21
1_555
A
ASN
161
A
ASN
161
21
1_555
A
LEU
214
A
LEU
214
21
1_555
A
TRP
233
A
TRP
233
21
1_555
A
ARG
285
A
ARG
285
21
1_555
A
HIS
298
A
HIS
298
21
1_555
A
THR
299
A
THR
299
21
1_555
A
GLY
300
A
GLY
300
21
1_555
A
THR
301
A
THR
301
21
1_555
A
GLN
303
A
GLN
303
21
1_555
A
SER
326
A
SER
326
21
1_555
A
ASN
327
A
ASN
327
21
1_555
A
FOR
600
F
FOR
21
1_555
A
HOH
2013
H
HOH
21
1_555
A
HOH
2110
H
HOH
21
1_555
A
HOH
2209
H
HOH
21
1_555
A
HOH
2249
H
HOH
21
4_546
A
HOH
2271
H
HOH
21
1_555
A
LEU
19
A
LEU
19
11
1_455
A
SER
20
A
SER
20
11
1_455
A
GLN
21
A
GLN
21
11
1_455
A
GLY
22
A
GLY
22
11
1_455
A
LYS
80
A
LYS
80
11
1_555
A
GOL
501
D
GOL
11
1_555
A
HOH
2207
H
HOH
11
1_555
A
HOH
2286
H
HOH
11
1_555
A
HOH
2350
H
HOH
11
1_555
A
HOH
2365
H
HOH
11
1_555
A
HOH
2548
H
HOH
11
1_555
A
ARG
46
A
ARG
46
12
1_455
A
THR
175
A
THR
175
12
1_555
A
GLY
220
A
GLY
220
12
1_455
A
GLY
221
A
GLY
221
12
1_455
A
GOL
500
C
GOL
12
1_555
A
HOH
2024
H
HOH
12
1_455
A
HOH
2094
H
HOH
12
1_555
A
HOH
2199
H
HOH
12
1_555
A
HOH
2365
H
HOH
12
1_555
A
HOH
2369
H
HOH
12
1_555
A
HOH
2404
H
HOH
12
1_455
A
HOH
2426
H
HOH
12
1_555
A
VAL
204
A
VAL
204
9
1_555
A
ILE
205
A
ILE
205
9
1_555
A
GLY
207
A
GLY
207
9
1_555
A
HIS
209
A
HIS
209
9
1_555
A
LYS
346
A
LYS
346
9
3_645
A
HOH
2016
H
HOH
9
1_555
A
HOH
2091
H
HOH
9
1_555
A
HOH
2230
H
HOH
9
1_555
A
HOH
2360
H
HOH
9
1_555
A
LYS
65
A
LYS
65
6
1_555
A
HIS
108
A
HIS
108
6
1_555
A
TYR
159
A
TYR
159
6
1_555
A
ARG
285
A
ARG
285
6
1_555
A
HEL
400
B
HEL
6
1_555
A
FOR
601
G
FOR
6
1_555
A
LYS
65
A
LYS
65
5
1_555
A
HIS
108
A
HIS
108
5
1_555
A
TYR
159
A
TYR
159
5
1_555
A
TYR
280
A
TYR
280
5
1_555
A
FOR
600
F
FOR
5
1_555
19
P 21 21 21