0.019685
0.000000
0.000000
0.000000
0.015015
0.000000
0.000000
0.000000
0.010132
0.000000
0.000000
0.000000
Silvaggi, N.R.
Josephine, H.R.
Pratt, R.F.
Kelly, J.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
50.800
66.600
98.700
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C19 H27 N4 O9 S -1
487.504
(6R,7R)-3-[(ACETYLOXY)METHYL]-7-{[(6S)-6-(GLYCYLAMINO)-7-OXIDO-7-OXOHEPTANOYL]AMINO}-8-OXO-5-THIA-1-AZABICYCLO[4.2.0]OCTANE-2-CARBOXYLATE
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
C
N
138
N
O
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
S
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
O
N
158
N
O
N
159
N
N
N
160
R
C
N
161
S
C
N
162
N
C
N
163
N
O
N
164
N
N
N
165
N
C
N
166
N
O
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
C
N
171
S
C
N
172
N
C
N
173
N
O
N
174
N
O
N
175
N
N
N
176
N
C
N
177
N
O
N
178
N
C
N
179
N
N
N
180
N
O
N
181
N
C
N
182
N
O
N
183
N
C
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
N
N
212
S
C
N
213
N
C
N
214
N
O
N
215
N
C
Y
216
N
C
Y
217
N
N
Y
218
N
C
Y
219
N
C
Y
220
N
N
N
221
N
O
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
O
N
233
N
H
N
234
N
H
N
235
N
N
N
236
S
C
N
237
N
C
N
238
N
O
N
239
S
C
N
240
N
C
N
241
N
C
N
242
N
C
N
243
N
O
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
N
N
258
S
C
N
259
N
C
N
260
N
O
N
261
N
C
N
262
N
C
N
263
N
C
N
264
N
C
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
C
N
286
N
C
N
287
N
N
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
N
309
N
C
N
310
N
S
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
N
N
325
S
C
N
326
N
C
N
327
N
O
N
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
N
C
N
352
N
C
N
353
N
C
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
N
C
N
369
N
O
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
R
C
N
383
N
O
N
384
N
C
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
N
N
396
S
C
N
397
N
C
N
398
N
O
N
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
N
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
N
N
423
S
C
N
424
N
C
N
425
N
O
N
426
N
C
Y
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
C
N
433
N
O
N
434
N
O
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
N
N
447
S
C
N
448
N
C
N
449
N
O
N
450
N
C
N
451
N
C
N
452
N
C
N
453
N
O
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
Y
214
N
sing
Y
215
N
doub
Y
216
N
doub
N
217
N
sing
Y
218
N
sing
N
219
N
sing
Y
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
doub
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
Y
322
N
doub
Y
323
N
sing
Y
324
N
sing
N
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
Y
391
N
doub
Y
392
N
sing
Y
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
sing
Y
400
N
doub
N
401
N
sing
Y
402
N
doub
N
403
N
sing
Y
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
Y
419
N
doub
Y
420
N
sing
Y
421
N
sing
N
422
N
sing
Y
423
N
doub
N
424
N
sing
Y
425
N
doub
N
426
N
sing
Y
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
doub
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
345
521
533
10.1016/j.jmb.2004.10.076
15581896
Crystal structures of complexes between the R61 DD-peptidase and peptidoglycan-mimetic beta-lactams: a non-covalent complex with a "perfect penicillin"
2005
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
322
111
122
10.1016/S0022-2836(02)00742-8
Structures of Two Kinetic Intermediates Reveal Species Specificity of Penicillin-Binding Proteins
2002
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
98
1427
1431
10.1073/pnas.98.4.1427
A 1.2-A Snapshot of the Final Step of Bacterial Cell Wall Biosynthesis
2001
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
254
223
236
10.1006/jmbi.1995.0613
The Refined Crystallographic Structure of a Dd-Peptidase Penicillin-Target Enzyme at 1.6 A Resolution
1995
10.2210/pdb1pw8/pdb
pdb_00001pw8
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
100.0
1
MIRRORS
CCD
2003-04-12
BRANDEIS - B4
SI(111)
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
X12C
NSLS
1.00
1.00
SYNCHROTRON
NSLS BEAMLINE X12C
37422.574
D-alanyl-D-alanine carboxypeptidase
3.4.16.4
DD-PEPTIDASE
1
nat
polymer
487.504
(6R,7R)-3-[(ACETYLOXY)METHYL]-7-{[(6S)-6-(GLYCYLAMINO)-7-OXIDO-7-OXOHEPTANOYL]AMINO}-8-OXO-5-THIA-1-AZABICYCLO[4.2.0]OCTANE-2-CARBOXYLATE
1
syn
non-polymer
92.094
GLYCEROL
2
syn
non-polymer
18.015
water
487
nat
water
DD-peptidase, DD-carboxypeptidase
no
no
ADLPAPDDTGLQAVLHTALSQGAPGAMVRVDDNGTIHQLSEGVADRATGRAITTTDRFRVGSVTKSFSAVVLLQLVDEGK
LDLDASVNTYLPGLLPDDRITVRQVMSHRSGLYDYTNDMFAQTVPGFESVRNKVFSYQDLITLSLKHGVTNAPGAAYSYS
NTNFVVAGMLIEKLTGHSVATEYQNRIFTPLNLTDTFYVHPDTVIPGTHANGYLTPDEAGGALVDSTEQTVSWAQSAGAV
ISSTQDLDTFFSALMSGQLMSAAQLAQMQQWTTVNSTQGYGLGLRRRDLSCGISVYGHTGTVQGYYTYAFASKDGKRSVT
ALANTSNNVNVLNTMARTLESAFCGKPTT
ADLPAPDDTGLQAVLHTALSQGAPGAMVRVDDNGTIHQLSEGVADRATGRAITTTDRFRVGSVTKSFSAVVLLQLVDEGK
LDLDASVNTYLPGLLPDDRITVRQVMSHRSGLYDYTNDMFAQTVPGFESVRNKVFSYQDLITLSLKHGVTNAPGAAYSYS
NTNFVVAGMLIEKLTGHSVATEYQNRIFTPLNLTDTFYVHPDTVIPGTHANGYLTPDEAGGALVDSTEQTVSWAQSAGAV
ISSTQDLDTFFSALMSGQLMSAAQLAQMQQWTTVNSTQGYGLGLRRRDLSCGISVYGHTGTVQGYYTYAFASKDGKRSVT
ALANTSNNVNVLNTMARTLESAFCGKPTT
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Streptomyces
sample
31952
Streptomyces sp.
R61
1
1.91
44.86
VAPOR DIFFUSION, HANGING DROP
6.80
20% PEG 8000, 50mM Sodium Phosphate, pH 6.80, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
298.0
software
struct_conn
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Source and taxonomy
Version format compliance
Data collection
Derived calculations
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2004-07-13
1
1
2008-04-29
1
2
2011-07-13
1
3
2019-07-24
1
4
2023-08-16
_software.classification
_software.name
_struct_conn.pdbx_leaving_atom_flag
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal Structure Of Phosphonate-Inhibited D-Ala-D-Ala Peptidase Reveals An Analog Of A Tetrahedral Transition State
Michaelis Complex Of Streptomyces R61 Dd-Peptidase With A Specific Peptidoglycan Substrate Fragment
Complex Of Streptomyces R61 Dd-Peptidase With The Products Of A Specific Peptidoglycan Substrate Fragment
ACYL FORM OF LIGAND H2A
The ligand H2A in this structure is in its acylated
form. The acylation reaction resulted in the removal
of the covalent bond between atoms N5 and C8 of H2A
400, and the formation of the covalent bond between
atom OG of SER 62 and atom C8 of H2A 400.
MISSING LIGAND H2A ATOMS
The following atoms are missing in the coordinate
file for ligand CSC 400 in this structure:
O1
C1
O2
C26
RCSB
Y
RCSB
2003-07-01
REL
REL
H2A
(6R,7R)-3-[(ACETYLOXY)METHYL]-7-{[(6S)-6-(GLYCYLAMINO)-7-OXIDO-7-OXOHEPTANOYL]AMINO}-8-OXO-5-THIA-1-AZABICYCLO[4.2.0]OCTANE-2-CARBOXYLATE
GOL
GLYCEROL
HOH
water
3PTE
PDB
experimental model
H2A
400
2
H2A
H2A
400
A
GOL
500
3
GOL
GOL
500
A
GOL
501
3
GOL
GOL
501
A
HOH
2001
4
HOH
HOH
2001
A
HOH
2002
4
HOH
HOH
2002
A
HOH
2003
4
HOH
HOH
2003
A
HOH
2004
4
HOH
HOH
2004
A
HOH
2005
4
HOH
HOH
2005
A
HOH
2006
4
HOH
HOH
2006
A
HOH
2007
4
HOH
HOH
2007
A
HOH
2008
4
HOH
HOH
2008
A
HOH
2009
4
HOH
HOH
2009
A
HOH
2010
4
HOH
HOH
2010
A
HOH
2011
4
HOH
HOH
2011
A
HOH
2012
4
HOH
HOH
2012
A
HOH
2013
4
HOH
HOH
2013
A
HOH
2014
4
HOH
HOH
2014
A
HOH
2015
4
HOH
HOH
2015
A
HOH
2016
4
HOH
HOH
2016
A
HOH
2017
4
HOH
HOH
2017
A
HOH
2018
4
HOH
HOH
2018
A
HOH
2019
4
HOH
HOH
2019
A
HOH
2020
4
HOH
HOH
2020
A
HOH
2021
4
HOH
HOH
2021
A
HOH
2022
4
HOH
HOH
2022
A
HOH
2023
4
HOH
HOH
2023
A
HOH
2024
4
HOH
HOH
2024
A
HOH
2025
4
HOH
HOH
2025
A
HOH
2026
4
HOH
HOH
2026
A
HOH
2027
4
HOH
HOH
2027
A
HOH
2028
4
HOH
HOH
2028
A
HOH
2029
4
HOH
HOH
2029
A
HOH
2030
4
HOH
HOH
2030
A
HOH
2031
4
HOH
HOH
2031
A
HOH
2032
4
HOH
HOH
2032
A
HOH
2033
4
HOH
HOH
2033
A
HOH
2034
4
HOH
HOH
2034
A
HOH
2035
4
HOH
HOH
2035
A
HOH
2036
4
HOH
HOH
2036
A
HOH
2037
4
HOH
HOH
2037
A
HOH
2038
4
HOH
HOH
2038
A
HOH
2039
4
HOH
HOH
2039
A
HOH
2040
4
HOH
HOH
2040
A
HOH
2041
4
HOH
HOH
2041
A
HOH
2042
4
HOH
HOH
2042
A
HOH
2043
4
HOH
HOH
2043
A
HOH
2044
4
HOH
HOH
2044
A
HOH
2045
4
HOH
HOH
2045
A
HOH
2046
4
HOH
HOH
2046
A
HOH
2047
4
HOH
HOH
2047
A
HOH
2048
4
HOH
HOH
2048
A
HOH
2049
4
HOH
HOH
2049
A
HOH
2050
4
HOH
HOH
2050
A
HOH
2051
4
HOH
HOH
2051
A
HOH
2052
4
HOH
HOH
2052
A
HOH
2053
4
HOH
HOH
2053
A
HOH
2054
4
HOH
HOH
2054
A
HOH
2055
4
HOH
HOH
2055
A
HOH
2056
4
HOH
HOH
2056
A
HOH
2057
4
HOH
HOH
2057
A
HOH
2058
4
HOH
HOH
2058
A
HOH
2059
4
HOH
HOH
2059
A
HOH
2060
4
HOH
HOH
2060
A
HOH
2061
4
HOH
HOH
2061
A
HOH
2062
4
HOH
HOH
2062
A
HOH
2063
4
HOH
HOH
2063
A
HOH
2064
4
HOH
HOH
2064
A
HOH
2065
4
HOH
HOH
2065
A
HOH
2066
4
HOH
HOH
2066
A
HOH
2067
4
HOH
HOH
2067
A
HOH
2068
4
HOH
HOH
2068
A
HOH
2069
4
HOH
HOH
2069
A
HOH
2070
4
HOH
HOH
2070
A
HOH
2071
4
HOH
HOH
2071
A
HOH
2072
4
HOH
HOH
2072
A
HOH
2073
4
HOH
HOH
2073
A
HOH
2074
4
HOH
HOH
2074
A
HOH
2075
4
HOH
HOH
2075
A
HOH
2076
4
HOH
HOH
2076
A
HOH
2077
4
HOH
HOH
2077
A
HOH
2078
4
HOH
HOH
2078
A
HOH
2079
4
HOH
HOH
2079
A
HOH
2080
4
HOH
HOH
2080
A
HOH
2081
4
HOH
HOH
2081
A
HOH
2082
4
HOH
HOH
2082
A
HOH
2083
4
HOH
HOH
2083
A
HOH
2084
4
HOH
HOH
2084
A
HOH
2085
4
HOH
HOH
2085
A
HOH
2086
4
HOH
HOH
2086
A
HOH
2087
4
HOH
HOH
2087
A
HOH
2088
4
HOH
HOH
2088
A
HOH
2089
4
HOH
HOH
2089
A
HOH
2090
4
HOH
HOH
2090
A
HOH
2091
4
HOH
HOH
2091
A
HOH
2092
4
HOH
HOH
2092
A
HOH
2093
4
HOH
HOH
2093
A
HOH
2094
4
HOH
HOH
2094
A
HOH
2095
4
HOH
HOH
2095
A
HOH
2096
4
HOH
HOH
2096
A
HOH
2097
4
HOH
HOH
2097
A
HOH
2098
4
HOH
HOH
2098
A
HOH
2099
4
HOH
HOH
2099
A
HOH
2100
4
HOH
HOH
2100
A
HOH
2101
4
HOH
HOH
2101
A
HOH
2102
4
HOH
HOH
2102
A
HOH
2103
4
HOH
HOH
2103
A
HOH
2104
4
HOH
HOH
2104
A
HOH
2105
4
HOH
HOH
2105
A
HOH
2106
4
HOH
HOH
2106
A
HOH
2107
4
HOH
HOH
2107
A
HOH
2108
4
HOH
HOH
2108
A
HOH
2109
4
HOH
HOH
2109
A
HOH
2110
4
HOH
HOH
2110
A
HOH
2111
4
HOH
HOH
2111
A
HOH
2112
4
HOH
HOH
2112
A
HOH
2113
4
HOH
HOH
2113
A
HOH
2114
4
HOH
HOH
2114
A
HOH
2115
4
HOH
HOH
2115
A
HOH
2116
4
HOH
HOH
2116
A
HOH
2117
4
HOH
HOH
2117
A
HOH
2118
4
HOH
HOH
2118
A
HOH
2119
4
HOH
HOH
2119
A
HOH
2120
4
HOH
HOH
2120
A
HOH
2121
4
HOH
HOH
2121
A
HOH
2122
4
HOH
HOH
2122
A
HOH
2123
4
HOH
HOH
2123
A
HOH
2124
4
HOH
HOH
2124
A
HOH
2125
4
HOH
HOH
2125
A
HOH
2126
4
HOH
HOH
2126
A
HOH
2127
4
HOH
HOH
2127
A
HOH
2128
4
HOH
HOH
2128
A
HOH
2129
4
HOH
HOH
2129
A
HOH
2130
4
HOH
HOH
2130
A
HOH
2131
4
HOH
HOH
2131
A
HOH
2132
4
HOH
HOH
2132
A
HOH
2133
4
HOH
HOH
2133
A
HOH
2134
4
HOH
HOH
2134
A
HOH
2135
4
HOH
HOH
2135
A
HOH
2136
4
HOH
HOH
2136
A
HOH
2137
4
HOH
HOH
2137
A
HOH
2138
4
HOH
HOH
2138
A
HOH
2139
4
HOH
HOH
2139
A
HOH
2140
4
HOH
HOH
2140
A
HOH
2141
4
HOH
HOH
2141
A
HOH
2142
4
HOH
HOH
2142
A
HOH
2143
4
HOH
HOH
2143
A
HOH
2144
4
HOH
HOH
2144
A
HOH
2145
4
HOH
HOH
2145
A
HOH
2146
4
HOH
HOH
2146
A
HOH
2147
4
HOH
HOH
2147
A
HOH
2148
4
HOH
HOH
2148
A
HOH
2149
4
HOH
HOH
2149
A
HOH
2150
4
HOH
HOH
2150
A
HOH
2151
4
HOH
HOH
2151
A
HOH
2152
4
HOH
HOH
2152
A
HOH
2153
4
HOH
HOH
2153
A
HOH
2154
4
HOH
HOH
2154
A
HOH
2155
4
HOH
HOH
2155
A
HOH
2156
4
HOH
HOH
2156
A
HOH
2157
4
HOH
HOH
2157
A
HOH
2158
4
HOH
HOH
2158
A
HOH
2159
4
HOH
HOH
2159
A
HOH
2160
4
HOH
HOH
2160
A
HOH
2161
4
HOH
HOH
2161
A
HOH
2162
4
HOH
HOH
2162
A
HOH
2163
4
HOH
HOH
2163
A
HOH
2164
4
HOH
HOH
2164
A
HOH
2165
4
HOH
HOH
2165
A
HOH
2166
4
HOH
HOH
2166
A
HOH
2167
4
HOH
HOH
2167
A
HOH
2168
4
HOH
HOH
2168
A
HOH
2169
4
HOH
HOH
2169
A
HOH
2170
4
HOH
HOH
2170
A
HOH
2171
4
HOH
HOH
2171
A
HOH
2172
4
HOH
HOH
2172
A
HOH
2173
4
HOH
HOH
2173
A
HOH
2174
4
HOH
HOH
2174
A
HOH
2175
4
HOH
HOH
2175
A
HOH
2176
4
HOH
HOH
2176
A
HOH
2177
4
HOH
HOH
2177
A
HOH
2178
4
HOH
HOH
2178
A
HOH
2179
4
HOH
HOH
2179
A
HOH
2180
4
HOH
HOH
2180
A
HOH
2181
4
HOH
HOH
2181
A
HOH
2182
4
HOH
HOH
2182
A
HOH
2183
4
HOH
HOH
2183
A
HOH
2184
4
HOH
HOH
2184
A
HOH
2185
4
HOH
HOH
2185
A
HOH
2186
4
HOH
HOH
2186
A
HOH
2187
4
HOH
HOH
2187
A
HOH
2188
4
HOH
HOH
2188
A
HOH
2189
4
HOH
HOH
2189
A
HOH
2190
4
HOH
HOH
2190
A
HOH
2191
4
HOH
HOH
2191
A
HOH
2192
4
HOH
HOH
2192
A
HOH
2193
4
HOH
HOH
2193
A
HOH
2194
4
HOH
HOH
2194
A
HOH
2195
4
HOH
HOH
2195
A
HOH
2196
4
HOH
HOH
2196
A
HOH
2197
4
HOH
HOH
2197
A
HOH
2198
4
HOH
HOH
2198
A
HOH
2199
4
HOH
HOH
2199
A
HOH
2200
4
HOH
HOH
2200
A
HOH
2201
4
HOH
HOH
2201
A
HOH
2202
4
HOH
HOH
2202
A
HOH
2203
4
HOH
HOH
2203
A
HOH
2204
4
HOH
HOH
2204
A
HOH
2205
4
HOH
HOH
2205
A
HOH
2206
4
HOH
HOH
2206
A
HOH
2207
4
HOH
HOH
2207
A
HOH
2208
4
HOH
HOH
2208
A
HOH
2209
4
HOH
HOH
2209
A
HOH
2210
4
HOH
HOH
2210
A
HOH
2211
4
HOH
HOH
2211
A
HOH
2212
4
HOH
HOH
2212
A
HOH
2213
4
HOH
HOH
2213
A
HOH
2214
4
HOH
HOH
2214
A
HOH
2215
4
HOH
HOH
2215
A
HOH
2216
4
HOH
HOH
2216
A
HOH
2217
4
HOH
HOH
2217
A
HOH
2218
4
HOH
HOH
2218
A
HOH
2219
4
HOH
HOH
2219
A
HOH
2220
4
HOH
HOH
2220
A
HOH
2221
4
HOH
HOH
2221
A
HOH
2222
4
HOH
HOH
2222
A
HOH
2223
4
HOH
HOH
2223
A
HOH
2224
4
HOH
HOH
2224
A
HOH
2225
4
HOH
HOH
2225
A
HOH
2226
4
HOH
HOH
2226
A
HOH
2227
4
HOH
HOH
2227
A
HOH
2228
4
HOH
HOH
2228
A
HOH
2229
4
HOH
HOH
2229
A
HOH
2230
4
HOH
HOH
2230
A
HOH
2231
4
HOH
HOH
2231
A
HOH
2232
4
HOH
HOH
2232
A
HOH
2233
4
HOH
HOH
2233
A
HOH
2234
4
HOH
HOH
2234
A
HOH
2235
4
HOH
HOH
2235
A
HOH
2236
4
HOH
HOH
2236
A
HOH
2237
4
HOH
HOH
2237
A
HOH
2238
4
HOH
HOH
2238
A
HOH
2239
4
HOH
HOH
2239
A
HOH
2240
4
HOH
HOH
2240
A
HOH
2241
4
HOH
HOH
2241
A
HOH
2242
4
HOH
HOH
2242
A
HOH
2243
4
HOH
HOH
2243
A
HOH
2244
4
HOH
HOH
2244
A
HOH
2245
4
HOH
HOH
2245
A
HOH
2246
4
HOH
HOH
2246
A
HOH
2247
4
HOH
HOH
2247
A
HOH
2248
4
HOH
HOH
2248
A
HOH
2249
4
HOH
HOH
2249
A
HOH
2250
4
HOH
HOH
2250
A
HOH
2251
4
HOH
HOH
2251
A
HOH
2252
4
HOH
HOH
2252
A
HOH
2253
4
HOH
HOH
2253
A
HOH
2254
4
HOH
HOH
2254
A
HOH
2255
4
HOH
HOH
2255
A
HOH
2256
4
HOH
HOH
2256
A
HOH
2257
4
HOH
HOH
2257
A
HOH
2258
4
HOH
HOH
2258
A
HOH
2259
4
HOH
HOH
2259
A
HOH
2260
4
HOH
HOH
2260
A
HOH
2261
4
HOH
HOH
2261
A
HOH
2262
4
HOH
HOH
2262
A
HOH
2263
4
HOH
HOH
2263
A
HOH
2264
4
HOH
HOH
2264
A
HOH
2265
4
HOH
HOH
2265
A
HOH
2266
4
HOH
HOH
2266
A
HOH
2267
4
HOH
HOH
2267
A
HOH
2268
4
HOH
HOH
2268
A
HOH
2269
4
HOH
HOH
2269
A
HOH
2270
4
HOH
HOH
2270
A
HOH
2271
4
HOH
HOH
2271
A
HOH
2272
4
HOH
HOH
2272
A
HOH
2273
4
HOH
HOH
2273
A
HOH
2274
4
HOH
HOH
2274
A
HOH
2275
4
HOH
HOH
2275
A
HOH
2276
4
HOH
HOH
2276
A
HOH
2277
4
HOH
HOH
2277
A
HOH
2278
4
HOH
HOH
2278
A
HOH
2279
4
HOH
HOH
2279
A
HOH
2280
4
HOH
HOH
2280
A
HOH
2281
4
HOH
HOH
2281
A
HOH
2282
4
HOH
HOH
2282
A
HOH
2283
4
HOH
HOH
2283
A
HOH
2284
4
HOH
HOH
2284
A
HOH
2285
4
HOH
HOH
2285
A
HOH
2286
4
HOH
HOH
2286
A
HOH
2287
4
HOH
HOH
2287
A
HOH
2288
4
HOH
HOH
2288
A
HOH
2289
4
HOH
HOH
2289
A
HOH
2290
4
HOH
HOH
2290
A
HOH
2291
4
HOH
HOH
2291
A
HOH
2292
4
HOH
HOH
2292
A
HOH
2293
4
HOH
HOH
2293
A
HOH
2294
4
HOH
HOH
2294
A
HOH
2295
4
HOH
HOH
2295
A
HOH
2296
4
HOH
HOH
2296
A
HOH
2297
4
HOH
HOH
2297
A
HOH
2298
4
HOH
HOH
2298
A
HOH
2299
4
HOH
HOH
2299
A
HOH
2300
4
HOH
HOH
2300
A
HOH
2301
4
HOH
HOH
2301
A
HOH
2302
4
HOH
HOH
2302
A
HOH
2303
4
HOH
HOH
2303
A
HOH
2304
4
HOH
HOH
2304
A
HOH
2305
4
HOH
HOH
2305
A
HOH
2306
4
HOH
HOH
2306
A
HOH
2307
4
HOH
HOH
2307
A
HOH
2308
4
HOH
HOH
2308
A
HOH
2309
4
HOH
HOH
2309
A
HOH
2310
4
HOH
HOH
2310
A
HOH
2311
4
HOH
HOH
2311
A
HOH
2312
4
HOH
HOH
2312
A
HOH
2313
4
HOH
HOH
2313
A
HOH
2314
4
HOH
HOH
2314
A
HOH
2315
4
HOH
HOH
2315
A
HOH
2316
4
HOH
HOH
2316
A
HOH
2317
4
HOH
HOH
2317
A
HOH
2318
4
HOH
HOH
2318
A
HOH
2319
4
HOH
HOH
2319
A
HOH
2320
4
HOH
HOH
2320
A
HOH
2321
4
HOH
HOH
2321
A
HOH
2322
4
HOH
HOH
2322
A
HOH
2323
4
HOH
HOH
2323
A
HOH
2324
4
HOH
HOH
2324
A
HOH
2325
4
HOH
HOH
2325
A
HOH
2326
4
HOH
HOH
2326
A
HOH
2327
4
HOH
HOH
2327
A
HOH
2328
4
HOH
HOH
2328
A
HOH
2329
4
HOH
HOH
2329
A
HOH
2330
4
HOH
HOH
2330
A
HOH
2331
4
HOH
HOH
2331
A
HOH
2332
4
HOH
HOH
2332
A
HOH
2333
4
HOH
HOH
2333
A
HOH
2334
4
HOH
HOH
2334
A
HOH
2335
4
HOH
HOH
2335
A
HOH
2336
4
HOH
HOH
2336
A
HOH
2337
4
HOH
HOH
2337
A
HOH
2338
4
HOH
HOH
2338
A
HOH
2339
4
HOH
HOH
2339
A
HOH
2340
4
HOH
HOH
2340
A
HOH
2341
4
HOH
HOH
2341
A
HOH
2342
4
HOH
HOH
2342
A
HOH
2343
4
HOH
HOH
2343
A
HOH
2344
4
HOH
HOH
2344
A
HOH
2345
4
HOH
HOH
2345
A
HOH
2346
4
HOH
HOH
2346
A
HOH
2347
4
HOH
HOH
2347
A
HOH
2348
4
HOH
HOH
2348
A
HOH
2349
4
HOH
HOH
2349
A
HOH
2350
4
HOH
HOH
2350
A
HOH
2351
4
HOH
HOH
2351
A
HOH
2352
4
HOH
HOH
2352
A
HOH
2353
4
HOH
HOH
2353
A
HOH
2354
4
HOH
HOH
2354
A
HOH
2355
4
HOH
HOH
2355
A
HOH
2356
4
HOH
HOH
2356
A
HOH
2357
4
HOH
HOH
2357
A
HOH
2358
4
HOH
HOH
2358
A
HOH
2359
4
HOH
HOH
2359
A
HOH
2360
4
HOH
HOH
2360
A
HOH
2361
4
HOH
HOH
2361
A
HOH
2362
4
HOH
HOH
2362
A
HOH
2363
4
HOH
HOH
2363
A
HOH
2364
4
HOH
HOH
2364
A
HOH
2365
4
HOH
HOH
2365
A
HOH
2366
4
HOH
HOH
2366
A
HOH
2367
4
HOH
HOH
2367
A
HOH
2368
4
HOH
HOH
2368
A
HOH
2369
4
HOH
HOH
2369
A
HOH
2370
4
HOH
HOH
2370
A
HOH
2371
4
HOH
HOH
2371
A
HOH
2372
4
HOH
HOH
2372
A
HOH
2373
4
HOH
HOH
2373
A
HOH
2374
4
HOH
HOH
2374
A
HOH
2375
4
HOH
HOH
2375
A
HOH
2376
4
HOH
HOH
2376
A
HOH
2377
4
HOH
HOH
2377
A
HOH
2378
4
HOH
HOH
2378
A
HOH
2379
4
HOH
HOH
2379
A
HOH
2380
4
HOH
HOH
2380
A
HOH
2381
4
HOH
HOH
2381
A
HOH
2382
4
HOH
HOH
2382
A
HOH
2383
4
HOH
HOH
2383
A
HOH
2384
4
HOH
HOH
2384
A
HOH
2385
4
HOH
HOH
2385
A
HOH
2386
4
HOH
HOH
2386
A
HOH
2387
4
HOH
HOH
2387
A
HOH
2388
4
HOH
HOH
2388
A
HOH
2389
4
HOH
HOH
2389
A
HOH
2390
4
HOH
HOH
2390
A
HOH
2391
4
HOH
HOH
2391
A
HOH
2392
4
HOH
HOH
2392
A
HOH
2393
4
HOH
HOH
2393
A
HOH
2394
4
HOH
HOH
2394
A
HOH
2395
4
HOH
HOH
2395
A
HOH
2396
4
HOH
HOH
2396
A
HOH
2397
4
HOH
HOH
2397
A
HOH
2398
4
HOH
HOH
2398
A
HOH
2399
4
HOH
HOH
2399
A
HOH
2400
4
HOH
HOH
2400
A
HOH
2401
4
HOH
HOH
2401
A
HOH
2402
4
HOH
HOH
2402
A
HOH
2403
4
HOH
HOH
2403
A
HOH
2404
4
HOH
HOH
2404
A
HOH
2405
4
HOH
HOH
2405
A
HOH
2406
4
HOH
HOH
2406
A
HOH
2407
4
HOH
HOH
2407
A
HOH
2408
4
HOH
HOH
2408
A
HOH
2409
4
HOH
HOH
2409
A
HOH
2410
4
HOH
HOH
2410
A
HOH
2411
4
HOH
HOH
2411
A
HOH
2412
4
HOH
HOH
2412
A
HOH
2413
4
HOH
HOH
2413
A
HOH
2414
4
HOH
HOH
2414
A
HOH
2415
4
HOH
HOH
2415
A
HOH
2416
4
HOH
HOH
2416
A
HOH
2417
4
HOH
HOH
2417
A
HOH
2418
4
HOH
HOH
2418
A
HOH
2419
4
HOH
HOH
2419
A
HOH
2420
4
HOH
HOH
2420
A
HOH
2421
4
HOH
HOH
2421
A
HOH
2422
4
HOH
HOH
2422
A
HOH
2423
4
HOH
HOH
2423
A
HOH
2424
4
HOH
HOH
2424
A
HOH
2425
4
HOH
HOH
2425
A
HOH
2426
4
HOH
HOH
2426
A
HOH
2427
4
HOH
HOH
2427
A
HOH
2428
4
HOH
HOH
2428
A
HOH
2429
4
HOH
HOH
2429
A
HOH
2430
4
HOH
HOH
2430
A
HOH
2431
4
HOH
HOH
2431
A
HOH
2432
4
HOH
HOH
2432
A
HOH
2433
4
HOH
HOH
2433
A
HOH
2434
4
HOH
HOH
2434
A
HOH
2435
4
HOH
HOH
2435
A
HOH
2436
4
HOH
HOH
2436
A
HOH
2437
4
HOH
HOH
2437
A
HOH
2440
4
HOH
HOH
2440
A
HOH
2441
4
HOH
HOH
2441
A
HOH
2443
4
HOH
HOH
2443
A
HOH
2445
4
HOH
HOH
2445
A
HOH
2446
4
HOH
HOH
2446
A
HOH
2447
4
HOH
HOH
2447
A
HOH
2448
4
HOH
HOH
2448
A
HOH
2449
4
HOH
HOH
2449
A
HOH
2450
4
HOH
HOH
2450
A
HOH
2451
4
HOH
HOH
2451
A
HOH
2452
4
HOH
HOH
2452
A
HOH
2454
4
HOH
HOH
2454
A
HOH
2455
4
HOH
HOH
2455
A
HOH
2456
4
HOH
HOH
2456
A
HOH
2457
4
HOH
HOH
2457
A
HOH
2458
4
HOH
HOH
2458
A
HOH
2459
4
HOH
HOH
2459
A
HOH
2460
4
HOH
HOH
2460
A
HOH
2461
4
HOH
HOH
2461
A
HOH
2462
4
HOH
HOH
2462
A
HOH
2463
4
HOH
HOH
2463
A
HOH
2464
4
HOH
HOH
2464
A
HOH
2465
4
HOH
HOH
2465
A
HOH
2466
4
HOH
HOH
2466
A
HOH
2467
4
HOH
HOH
2467
A
HOH
2468
4
HOH
HOH
2468
A
HOH
2469
4
HOH
HOH
2469
A
HOH
2471
4
HOH
HOH
2471
A
HOH
2472
4
HOH
HOH
2472
A
HOH
2473
4
HOH
HOH
2473
A
HOH
2474
4
HOH
HOH
2474
A
HOH
2475
4
HOH
HOH
2475
A
HOH
2476
4
HOH
HOH
2476
A
HOH
2477
4
HOH
HOH
2477
A
HOH
2478
4
HOH
HOH
2478
A
HOH
2479
4
HOH
HOH
2479
A
HOH
2480
4
HOH
HOH
2480
A
HOH
2481
4
HOH
HOH
2481
A
HOH
2482
4
HOH
HOH
2482
A
HOH
2483
4
HOH
HOH
2483
A
HOH
2484
4
HOH
HOH
2484
A
HOH
2485
4
HOH
HOH
2485
A
HOH
2487
4
HOH
HOH
2487
A
HOH
2488
4
HOH
HOH
2488
A
HOH
2490
4
HOH
HOH
2490
A
HOH
2491
4
HOH
HOH
2491
A
HOH
2492
4
HOH
HOH
2492
A
HOH
2493
4
HOH
HOH
2493
A
HOH
2498
4
HOH
HOH
2498
A
HOH
2502
4
HOH
HOH
2502
A
n
1
1
A
n
2
2
A
LEU
3
n
3
LEU
3
A
PRO
4
n
4
PRO
4
A
ALA
5
n
5
ALA
5
A
PRO
6
n
6
PRO
6
A
ASP
7
n
7
ASP
7
A
ASP
8
n
8
ASP
8
A
THR
9
n
9
THR
9
A
GLY
10
n
10
GLY
10
A
LEU
11
n
11
LEU
11
A
GLN
12
n
12
GLN
12
A
ALA
13
n
13
ALA
13
A
VAL
14
n
14
VAL
14
A
LEU
15
n
15
LEU
15
A
HIS
16
n
16
HIS
16
A
THR
17
n
17
THR
17
A
ALA
18
n
18
ALA
18
A
LEU
19
n
19
LEU
19
A
SER
20
n
20
SER
20
A
GLN
21
n
21
GLN
21
A
GLY
22
n
22
GLY
22
A
ALA
23
n
23
ALA
23
A
PRO
24
n
24
PRO
24
A
GLY
25
n
25
GLY
25
A
ALA
26
n
26
ALA
26
A
MET
27
n
27
MET
27
A
VAL
28
n
28
VAL
28
A
ARG
29
n
29
ARG
29
A
VAL
30
n
30
VAL
30
A
ASP
31
n
31
ASP
31
A
ASP
32
n
32
ASP
32
A
ASN
33
n
33
ASN
33
A
GLY
34
n
34
GLY
34
A
THR
35
n
35
THR
35
A
ILE
36
n
36
ILE
36
A
HIS
37
n
37
HIS
37
A
GLN
38
n
38
GLN
38
A
LEU
39
n
39
LEU
39
A
SER
40
n
40
SER
40
A
GLU
41
n
41
GLU
41
A
GLY
42
n
42
GLY
42
A
VAL
43
n
43
VAL
43
A
ALA
44
n
44
ALA
44
A
ASP
45
n
45
ASP
45
A
ARG
46
n
46
ARG
46
A
ALA
47
n
47
ALA
47
A
THR
48
n
48
THR
48
A
GLY
49
n
49
GLY
49
A
ARG
50
n
50
ARG
50
A
ALA
51
n
51
ALA
51
A
ILE
52
n
52
ILE
52
A
THR
53
n
53
THR
53
A
THR
54
n
54
THR
54
A
THR
55
n
55
THR
55
A
ASP
56
n
56
ASP
56
A
ARG
57
n
57
ARG
57
A
PHE
58
n
58
PHE
58
A
ARG
59
n
59
ARG
59
A
VAL
60
n
60
VAL
60
A
GLY
61
n
61
GLY
61
A
SER
62
n
62
SER
62
A
VAL
63
n
63
VAL
63
A
THR
64
n
64
THR
64
A
LYS
65
n
65
LYS
65
A
SER
66
n
66
SER
66
A
PHE
67
n
67
PHE
67
A
SER
68
n
68
SER
68
A
ALA
69
n
69
ALA
69
A
VAL
70
n
70
VAL
70
A
VAL
71
n
71
VAL
71
A
LEU
72
n
72
LEU
72
A
LEU
73
n
73
LEU
73
A
GLN
74
n
74
GLN
74
A
LEU
75
n
75
LEU
75
A
VAL
76
n
76
VAL
76
A
ASP
77
n
77
ASP
77
A
GLU
78
n
78
GLU
78
A
GLY
79
n
79
GLY
79
A
LYS
80
n
80
LYS
80
A
LEU
81
n
81
LEU
81
A
ASP
82
n
82
ASP
82
A
LEU
83
n
83
LEU
83
A
ASP
84
n
84
ASP
84
A
ALA
85
n
85
ALA
85
A
SER
86
n
86
SER
86
A
VAL
87
n
87
VAL
87
A
ASN
88
n
88
ASN
88
A
THR
89
n
89
THR
89
A
TYR
90
n
90
TYR
90
A
LEU
91
n
91
LEU
91
A
PRO
92
n
92
PRO
92
A
GLY
93
n
93
GLY
93
A
LEU
94
n
94
LEU
94
A
LEU
95
n
95
LEU
95
A
PRO
96
n
96
PRO
96
A
ASP
97
n
97
ASP
97
A
ASP
98
n
98
ASP
98
A
ARG
99
n
99
ARG
99
A
ILE
100
n
100
ILE
100
A
THR
101
n
101
THR
101
A
VAL
102
n
102
VAL
102
A
ARG
103
n
103
ARG
103
A
GLN
104
n
104
GLN
104
A
VAL
105
n
105
VAL
105
A
MET
106
n
106
MET
106
A
SER
107
n
107
SER
107
A
HIS
108
n
108
HIS
108
A
ARG
109
n
109
ARG
109
A
SER
110
n
110
SER
110
A
GLY
111
n
111
GLY
111
A
LEU
112
n
112
LEU
112
A
TYR
113
n
113
TYR
113
A
ASP
114
n
114
ASP
114
A
TYR
115
n
115
TYR
115
A
THR
116
n
116
THR
116
A
ASN
117
n
117
ASN
117
A
ASP
118
n
118
ASP
118
A
MET
119
n
119
MET
119
A
PHE
120
n
120
PHE
120
A
ALA
121
n
121
ALA
121
A
GLN
122
n
122
GLN
122
A
THR
123
n
123
THR
123
A
VAL
124
n
124
VAL
124
A
PRO
125
n
125
PRO
125
A
GLY
126
n
126
GLY
126
A
PHE
127
n
127
PHE
127
A
GLU
128
n
128
GLU
128
A
SER
129
n
129
SER
129
A
VAL
130
n
130
VAL
130
A
ARG
131
n
131
ARG
131
A
ASN
132
n
132
ASN
132
A
LYS
133
n
133
LYS
133
A
VAL
134
n
134
VAL
134
A
PHE
135
n
135
PHE
135
A
SER
136
n
136
SER
136
A
TYR
137
n
137
TYR
137
A
GLN
138
n
138
GLN
138
A
ASP
139
n
139
ASP
139
A
LEU
140
n
140
LEU
140
A
ILE
141
n
141
ILE
141
A
THR
142
n
142
THR
142
A
LEU
143
n
143
LEU
143
A
SER
144
n
144
SER
144
A
LEU
145
n
145
LEU
145
A
LYS
146
n
146
LYS
146
A
HIS
147
n
147
HIS
147
A
GLY
148
n
148
GLY
148
A
VAL
149
n
149
VAL
149
A
THR
150
n
150
THR
150
A
ASN
151
n
151
ASN
151
A
ALA
152
n
152
ALA
152
A
PRO
153
n
153
PRO
153
A
GLY
154
n
154
GLY
154
A
ALA
155
n
155
ALA
155
A
ALA
156
n
156
ALA
156
A
TYR
157
n
157
TYR
157
A
SER
158
n
158
SER
158
A
TYR
159
n
159
TYR
159
A
SER
160
n
160
SER
160
A
ASN
161
n
161
ASN
161
A
THR
162
n
162
THR
162
A
ASN
163
n
163
ASN
163
A
PHE
164
n
164
PHE
164
A
VAL
165
n
165
VAL
165
A
VAL
166
n
166
VAL
166
A
ALA
167
n
167
ALA
167
A
GLY
168
n
168
GLY
168
A
MET
169
n
169
MET
169
A
LEU
170
n
170
LEU
170
A
ILE
171
n
171
ILE
171
A
GLU
172
n
172
GLU
172
A
LYS
173
n
173
LYS
173
A
LEU
174
n
174
LEU
174
A
THR
175
n
175
THR
175
A
GLY
176
n
176
GLY
176
A
HIS
177
n
177
HIS
177
A
SER
178
n
178
SER
178
A
VAL
179
n
179
VAL
179
A
ALA
180
n
180
ALA
180
A
THR
181
n
181
THR
181
A
GLU
182
n
182
GLU
182
A
TYR
183
n
183
TYR
183
A
GLN
184
n
184
GLN
184
A
ASN
185
n
185
ASN
185
A
ARG
186
n
186
ARG
186
A
ILE
187
n
187
ILE
187
A
PHE
188
n
188
PHE
188
A
THR
189
n
189
THR
189
A
PRO
190
n
190
PRO
190
A
LEU
191
n
191
LEU
191
A
ASN
192
n
192
ASN
192
A
LEU
193
n
193
LEU
193
A
THR
194
n
194
THR
194
A
ASP
195
n
195
ASP
195
A
THR
196
n
196
THR
196
A
PHE
197
n
197
PHE
197
A
TYR
198
n
198
TYR
198
A
VAL
199
n
199
VAL
199
A
HIS
200
n
200
HIS
200
A
PRO
201
n
201
PRO
201
A
ASP
202
n
202
ASP
202
A
THR
203
n
203
THR
203
A
VAL
204
n
204
VAL
204
A
ILE
205
n
205
ILE
205
A
PRO
206
n
206
PRO
206
A
GLY
207
n
207
GLY
207
A
THR
208
n
208
THR
208
A
HIS
209
n
209
HIS
209
A
ALA
210
n
210
ALA
210
A
ASN
211
n
211
ASN
211
A
GLY
212
n
212
GLY
212
A
TYR
213
n
213
TYR
213
A
LEU
214
n
214
LEU
214
A
THR
215
n
215
THR
215
A
PRO
216
n
216
PRO
216
A
ASP
217
n
217
ASP
217
A
GLU
218
n
218
GLU
218
A
ALA
219
n
219
ALA
219
A
GLY
220
n
220
GLY
220
A
GLY
221
n
221
GLY
221
A
ALA
222
n
222
ALA
222
A
LEU
223
n
223
LEU
223
A
VAL
224
n
224
VAL
224
A
ASP
225
n
225
ASP
225
A
SER
226
n
226
SER
226
A
THR
227
n
227
THR
227
A
GLU
228
n
228
GLU
228
A
GLN
229
n
229
GLN
229
A
THR
230
n
230
THR
230
A
VAL
231
n
231
VAL
231
A
SER
232
n
232
SER
232
A
TRP
233
n
233
TRP
233
A
ALA
234
n
234
ALA
234
A
GLN
235
n
235
GLN
235
A
SER
236
n
236
SER
236
A
ALA
237
n
237
ALA
237
A
GLY
238
n
238
GLY
238
A
ALA
239
n
239
ALA
239
A
VAL
240
n
240
VAL
240
A
ILE
241
n
241
ILE
241
A
SER
242
n
242
SER
242
A
SER
243
n
243
SER
243
A
THR
244
n
244
THR
244
A
GLN
245
n
245
GLN
245
A
ASP
246
n
246
ASP
246
A
LEU
247
n
247
LEU
247
A
ASP
248
n
248
ASP
248
A
THR
249
n
249
THR
249
A
PHE
250
n
250
PHE
250
A
PHE
251
n
251
PHE
251
A
SER
252
n
252
SER
252
A
ALA
253
n
253
ALA
253
A
LEU
254
n
254
LEU
254
A
MET
255
n
255
MET
255
A
SER
256
n
256
SER
256
A
GLY
257
n
257
GLY
257
A
GLN
258
n
258
GLN
258
A
LEU
259
n
259
LEU
259
A
MET
260
n
260
MET
260
A
SER
261
n
261
SER
261
A
ALA
262
n
262
ALA
262
A
ALA
263
n
263
ALA
263
A
GLN
264
n
264
GLN
264
A
LEU
265
n
265
LEU
265
A
ALA
266
n
266
ALA
266
A
GLN
267
n
267
GLN
267
A
MET
268
n
268
MET
268
A
GLN
269
n
269
GLN
269
A
GLN
270
n
270
GLN
270
A
TRP
271
n
271
TRP
271
A
THR
272
n
272
THR
272
A
THR
273
n
273
THR
273
A
VAL
274
n
274
VAL
274
A
ASN
275
n
275
ASN
275
A
SER
276
n
276
SER
276
A
THR
277
n
277
THR
277
A
GLN
278
n
278
GLN
278
A
GLY
279
n
279
GLY
279
A
TYR
280
n
280
TYR
280
A
GLY
281
n
281
GLY
281
A
LEU
282
n
282
LEU
282
A
GLY
283
n
283
GLY
283
A
LEU
284
n
284
LEU
284
A
ARG
285
n
285
ARG
285
A
ARG
286
n
286
ARG
286
A
ARG
287
n
287
ARG
287
A
ASP
288
n
288
ASP
288
A
LEU
289
n
289
LEU
289
A
SER
290
n
290
SER
290
A
CYS
291
n
291
CYS
291
A
GLY
292
n
292
GLY
292
A
ILE
293
n
293
ILE
293
A
SER
294
n
294
SER
294
A
VAL
295
n
295
VAL
295
A
TYR
296
n
296
TYR
296
A
GLY
297
n
297
GLY
297
A
HIS
298
n
298
HIS
298
A
THR
299
n
299
THR
299
A
GLY
300
n
300
GLY
300
A
THR
301
n
301
THR
301
A
VAL
302
n
302
VAL
302
A
GLN
303
n
303
GLN
303
A
GLY
304
n
304
GLY
304
A
TYR
305
n
305
TYR
305
A
TYR
306
n
306
TYR
306
A
THR
307
n
307
THR
307
A
TYR
308
n
308
TYR
308
A
ALA
309
n
309
ALA
309
A
PHE
310
n
310
PHE
310
A
ALA
311
n
311
ALA
311
A
SER
312
n
312
SER
312
A
LYS
313
n
313
LYS
313
A
ASP
314
n
314
ASP
314
A
GLY
315
n
315
GLY
315
A
LYS
316
n
316
LYS
316
A
ARG
317
n
317
ARG
317
A
SER
318
n
318
SER
318
A
VAL
319
n
319
VAL
319
A
THR
320
n
320
THR
320
A
ALA
321
n
321
ALA
321
A
LEU
322
n
322
LEU
322
A
ALA
323
n
323
ALA
323
A
ASN
324
n
324
ASN
324
A
THR
325
n
325
THR
325
A
SER
326
n
326
SER
326
A
ASN
327
n
327
ASN
327
A
ASN
328
n
328
ASN
328
A
VAL
329
n
329
VAL
329
A
ASN
330
n
330
ASN
330
A
VAL
331
n
331
VAL
331
A
LEU
332
n
332
LEU
332
A
ASN
333
n
333
ASN
333
A
THR
334
n
334
THR
334
A
MET
335
n
335
MET
335
A
ALA
336
n
336
ALA
336
A
ARG
337
n
337
ARG
337
A
THR
338
n
338
THR
338
A
LEU
339
n
339
LEU
339
A
GLU
340
n
340
GLU
340
A
SER
341
n
341
SER
341
A
ALA
342
n
342
ALA
342
A
PHE
343
n
343
PHE
343
A
CYS
344
n
344
CYS
344
A
GLY
345
n
345
GLY
345
A
LYS
346
n
346
LYS
346
A
PRO
347
n
347
PRO
347
A
n
348
348
A
n
349
349
A
0.1024
0.1092
0.1007
0.1076
0.1472
0.1559
3392
3897
5.3
5.3
63940
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
HIS
37
A
O
HIS
37
A
N
VAL
30
A
N
VAL
30
A
N
ASP
31
A
N
ASP
31
A
O
SER
318
A
O
SER
318
A
O
VAL
319
A
O
VAL
319
A
N
PHE
310
A
N
PHE
310
A
O
TYR
305
A
O
TYR
305
A
N
VAL
302
A
N
VAL
302
A
O
GLY
297
A
O
GLY
297
A
N
ARG
285
A
N
ARG
285
A
O
ARG
286
A
O
ARG
286
A
N
GLY
279
A
N
GLY
279
A
O
TYR
280
A
O
TYR
280
A
N
THR
272
A
N
THR
272
A
N
PHE
58
A
N
PHE
58
A
O
SER
242
A
O
SER
242
A
O
VAL
224
A
O
VAL
224
A
N
LEU
214
A
N
LEU
214
A
N
TYR
213
A
N
TYR
213
A
O
SER
326
A
O
SER
326
1
A
O1
H2A
400
B
O1
H2A
1
1
N
1
A
C1
H2A
400
B
C1
H2A
1
1
N
1
A
O2
H2A
400
B
O2
H2A
1
1
N
1
A
C26
H2A
400
B
C26
H2A
1
1
N
1
A
ALA
1
A
ALA
1
1
Y
1
A
ASP
2
A
ASP
2
1
Y
1
A
THR
348
A
THR
348
1
Y
1
A
THR
349
A
THR
349
1
Y
1
6.65
1.10
119.40
126.05
A
A
A
NH1
CZ
NH2
ARG
ARG
ARG
29
29
29
A
A
A
N
1
-3.13
0.50
120.30
117.17
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
29
29
29
A
A
A
N
1
5.52
0.50
120.30
125.82
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
29
29
29
B
B
B
N
1
-3.53
0.50
120.30
116.77
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
29
29
29
A
A
A
N
1
5.53
0.90
118.30
123.83
A
A
A
CB
CG
OD1
ASP
ASP
ASP
31
31
31
A
A
A
N
1
6.82
0.90
118.30
125.12
A
A
A
CB
CG
OD2
ASP
ASP
ASP
31
31
31
B
B
B
N
1
-9.63
1.20
123.30
113.67
A
A
A
OE1
CD
OE2
GLU
GLU
GLU
41
41
41
N
1
-3.75
0.50
120.30
116.55
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
46
46
46
N
1
-3.58
0.50
120.30
116.72
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
50
50
50
N
1
7.04
0.90
118.30
125.34
A
A
A
CB
CG
OD1
ASP
ASP
ASP
98
98
98
A
A
A
N
1
-8.49
0.90
118.30
109.81
A
A
A
CB
CG
OD2
ASP
ASP
ASP
98
98
98
A
A
A
N
1
5.16
0.50
120.30
125.46
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
99
99
99
N
1
-4.36
0.50
120.30
115.94
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
109
109
109
N
1
-13.28
2.00
110.40
97.12
A
A
A
CB
CA
C
ASP
ASP
ASP
118
118
118
A
N
1
13.68
2.00
110.40
124.08
A
A
A
CB
CA
C
ASP
ASP
ASP
118
118
118
B
N
1
-14.06
2.10
122.30
108.24
A
A
A
C
N
CA
HIS
GLY
GLY
147
148
148
Y
1
5.86
0.80
121.30
127.16
A
A
A
CG
CD2
CE2
TYR
TYR
TYR
159
159
159
N
1
-3.10
0.50
120.30
117.20
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
186
186
186
N
1
-4.36
0.70
120.80
116.44
A
A
A
CB
CG
CD2
PHE
PHE
PHE
188
188
188
N
1
5.76
0.70
120.80
126.56
A
A
A
CB
CG
CD1
PHE
PHE
PHE
188
188
188
N
1
-5.87
0.90
118.30
112.43
A
A
A
CB
CG
OD2
ASP
ASP
ASP
195
195
195
N
1
-10.16
1.20
123.30
113.14
A
A
A
OE1
CD
OE2
GLU
GLU
GLU
218
218
218
N
1
3.22
0.50
120.30
123.52
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
285
285
285
N
1
-3.54
0.50
120.30
116.76
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
287
287
287
N
1
-5.50
0.90
118.30
112.80
A
A
A
CB
CG
OD2
ASP
ASP
ASP
314
314
314
N
1
-3.71
0.50
120.30
116.59
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
317
317
317
N
1
6.13
0.50
120.30
126.43
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
337
337
337
N
1
A
A
CD
OE1
GLU
GLU
41
41
-0.071
0.011
1.252
1.181
N
1
A
ILE
187
-133.60
-58.94
1
A
GLN
235
50.20
-118.32
1
A
ASN
324
-94.64
51.38
ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF) BY 0.031
0.1498
0.1076
0.1092
0.1076
1.30
10.00
28501
3897
73703
73703
34218
5.3
89.0
RANDOM
1
FREE R
0.0
FOURIER SYNTHESIS
3PTE
ENGH AND HUBER
0.06
14
243.00
3067.42
1.30
10.00
487
3130
41
0
2602
0.034
0.038
0.000
0.0313
0.077
0.083
0.040
0.006
0.041
0.089
1.300
50.00
1PW8
82877
82877
0.0
0.0
0.061
1
23.3
8.4
97.6
0.35
1.30
1.35
3.0
1
5.1
81.7
refinement
SHELXL-97
data scaling
SCALEPACK
refinement
CNS
data reduction
DENZO
phasing
CNS
Covalent Acyl Enzyme Complex Of The R61 DD-Peptidase with A Highly Specific Cephalosporin
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
A
ASP
7
A
ASP
7
HELX_P
A
GLN
21
A
GLN
21
1
1
15
A
VAL
63
A
VAL
63
HELX_P
A
GLU
78
A
GLU
78
1
2
16
A
SER
86
A
SER
86
HELX_P
A
LEU
91
A
LEU
91
1
3
6
A
THR
101
A
THR
101
HELX_P
A
SER
107
A
SER
107
1
4
7
A
TYR
115
A
TYR
115
HELX_P
A
PHE
120
A
PHE
120
1
5
6
A
GLN
122
A
GLN
122
HELX_P
A
ARG
131
A
ARG
131
1
6
10
A
SER
136
A
SER
136
HELX_P
A
LYS
146
A
LYS
146
1
7
11
A
SER
160
A
SER
160
HELX_P
A
GLY
176
A
GLY
176
1
8
17
A
SER
178
A
SER
178
HELX_P
A
ILE
187
A
ILE
187
1
9
10
A
ALA
234
A
ALA
234
HELX_P
A
GLY
238
A
GLY
238
5
10
5
A
SER
243
A
SER
243
HELX_P
A
SER
256
A
SER
256
1
11
14
A
SER
261
A
SER
261
HELX_P
A
GLN
269
A
GLN
269
1
12
9
A
ASN
328
A
ASN
328
HELX_P
A
CYS
344
A
CYS
344
1
13
17
disulf
2.093
A
CYS
291
A
SG
CYS
291
1_555
A
CYS
344
A
SG
CYS
344
1_555
covale
1.376
none
A
A
SER
62
A
OG
SER
62
1_555
A
H2A
400
B
C8
H2A
1_555
HYDROLASE
BETA-LACTAM, ANTIBIOTICS, PENICILLIN BINDING PROTEIN, ENZYME, PEPTIDOGLYCAN, HYDROLASE
A
HIS
200
A
HIS
200
1
A
PRO
201
A
PRO
201
-0.17
DAC_STRSR
UNP
1
32
P15555
ADLPAPDDTGLQAVLHTALSQGAPGAMVRVDDNGTIHQLSEGVADRATGRAITTTDRFRVGSVTKSFSAVVLLQLVDEGK
LDLDASVNTYLPGLLPDDRITVRQVMSHRSGLYDYTNDMFAQTVPGFESVRNKVFSYQDLITLSLKHGVTNAPGAAYSYS
NTNFVVAGMLIEKLTGHSVATEYQNRIFTPLNLTDTFYVHPDTVIPGTHANGYLTPDEAGGALVDSTEQTVSWAQSAGAV
ISSTQDLDTFFSALMSGQLMSAAQLAQMQQWTTVNSTQGYGLGLRRRDLSCGISVYGHTGTVQGYYTYAFASKDGKRSVT
ALANTSNNVNVLNTMARTLESAFCGKPTT
32
380
1PW8
1
349
P15555
A
1
1
349
8
2
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
THR
35
A
THR
35
A
GLY
42
A
GLY
42
A
GLY
25
A
GLY
25
A
ASP
32
A
ASP
32
A
ARG
317
A
ARG
317
A
ALA
323
A
ALA
323
A
TYR
305
A
TYR
305
A
ALA
311
A
ALA
311
A
SER
294
A
SER
294
A
VAL
302
A
VAL
302
A
ARG
285
A
ARG
285
A
ASP
288
A
ASP
288
A
GLN
278
A
GLN
278
A
TYR
280
A
TYR
280
A
THR
272
A
THR
272
A
ASN
275
A
ASN
275
A
PHE
58
A
PHE
58
A
ARG
59
A
ARG
59
A
ILE
241
A
ILE
241
A
SER
242
A
SER
242
A
VAL
224
A
VAL
224
A
ASP
225
A
ASP
225
A
TYR
213
A
TYR
213
A
LEU
214
A
LEU
214
A
THR
325
A
THR
325
A
SER
326
A
SER
326
BINDING SITE FOR RESIDUE H2A A 400
A
H2A
400
Software
20
BINDING SITE FOR RESIDUE GOL A 500
A
GOL
500
Software
9
BINDING SITE FOR RESIDUE GOL A 501
A
GOL
501
Software
7
A
SER
62
A
SER
62
20
1_555
A
ASP
98
A
ASP
98
20
4_546
A
ARG
99
A
ARG
99
20
4_546
A
PHE
120
A
PHE
120
20
1_555
A
THR
123
A
THR
123
20
1_555
A
TYR
159
A
TYR
159
20
1_555
A
ASN
161
A
ASN
161
20
1_555
A
LEU
214
A
LEU
214
20
1_555
A
THR
299
A
THR
299
20
1_555
A
GLY
300
A
GLY
300
20
1_555
A
THR
301
A
THR
301
20
1_555
A
GLN
303
A
GLN
303
20
1_555
A
SER
326
A
SER
326
20
1_555
A
ASN
327
A
ASN
327
20
1_555
A
GOL
500
C
GOL
20
1_555
A
HOH
2008
E
HOH
20
1_555
A
HOH
2012
E
HOH
20
4_546
A
HOH
2041
E
HOH
20
1_555
A
HOH
2244
E
HOH
20
1_555
A
HOH
2367
E
HOH
20
1_555
A
ASP
97
A
ASP
97
9
4_546
A
ARG
99
A
ARG
99
9
4_546
A
PRO
153
A
PRO
153
9
4_546
A
TYR
306
A
TYR
306
9
1_555
A
ASN
327
A
ASN
327
9
1_555
A
VAL
329
A
VAL
329
9
1_555
A
H2A
400
B
H2A
9
1_555
A
HOH
2105
E
HOH
9
1_555
A
HOH
2135
E
HOH
9
1_555
A
VAL
204
A
VAL
204
7
1_555
A
ILE
205
A
ILE
205
7
1_555
A
GLY
207
A
GLY
207
7
1_555
A
HIS
209
A
HIS
209
7
1_555
A
HOH
2028
E
HOH
7
1_555
A
HOH
2224
E
HOH
7
1_555
A
HOH
2257
E
HOH
7
1_555
19
P 21 21 21