0.030303
0.000000
0.000000
0.000000
0.023585
0.000000
0.000000
0.000000
0.020121
0.00000
0.00000
0.00000
Martinez, J.C.
Viguera, A.R.
Berisio, R.
Wilmanns, M.
Mateo, P.L.
Filmonov, V.V.
Serrano, L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
33.000
42.400
49.700
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
38
549
559
10.1021/bi981515u
9888794
Thermodynamic analysis of alpha-spectrin SH3 and two of its circular permutants with different loop lengths: discerning the reasons for rapid folding in proteins.
1999
10.2210/pdb1pwt/pdb
pdb_00001pwt
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
287
1
IMAGE PLATE
MAR scanner 180 mm plate
M
x-ray
1
1.5418
1.0
1.5418
OTHER
7042.095
ALPHA SPECTRIN
SH3 DOMAIN
MGTG INSTEAD OF MDETG AT THE N-TERMINUS
1
nat
polymer
18.015
water
88
nat
water
PWT
no
no
MGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD
MGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
chicken
Gallus
sample
CYTOSKELETON
9031
BRAIN
Gallus gallus
1
2.5
50
4
pH 4
diffrn_source
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Refinement description
1
0
1999-05-11
1
1
2008-03-04
1
2
2011-07-13
1
3
2018-04-04
1
4
2023-08-09
_diffrn_source.type
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Y
BNL
1998-10-06
REL
HOH
water
1SHG
PDB
experimental model
HOH
1
2
HOH
HOH
62
A
HOH
2
2
HOH
HOH
63
A
HOH
3
2
HOH
HOH
64
A
HOH
4
2
HOH
HOH
65
A
HOH
5
2
HOH
HOH
66
A
HOH
6
2
HOH
HOH
67
A
HOH
7
2
HOH
HOH
68
A
HOH
8
2
HOH
HOH
69
A
HOH
9
2
HOH
HOH
70
A
HOH
10
2
HOH
HOH
71
A
HOH
11
2
HOH
HOH
72
A
HOH
12
2
HOH
HOH
73
A
HOH
13
2
HOH
HOH
74
A
HOH
14
2
HOH
HOH
75
A
HOH
15
2
HOH
HOH
76
A
HOH
16
2
HOH
HOH
77
A
HOH
17
2
HOH
HOH
78
A
HOH
18
2
HOH
HOH
79
A
HOH
19
2
HOH
HOH
80
A
HOH
20
2
HOH
HOH
81
A
HOH
21
2
HOH
HOH
82
A
HOH
22
2
HOH
HOH
83
A
HOH
23
2
HOH
HOH
84
A
HOH
24
2
HOH
HOH
85
A
HOH
25
2
HOH
HOH
86
A
HOH
26
2
HOH
HOH
87
A
HOH
27
2
HOH
HOH
88
A
HOH
28
2
HOH
HOH
89
A
HOH
29
2
HOH
HOH
90
A
HOH
30
2
HOH
HOH
91
A
HOH
31
2
HOH
HOH
92
A
HOH
32
2
HOH
HOH
93
A
HOH
33
2
HOH
HOH
94
A
HOH
34
2
HOH
HOH
95
A
HOH
35
2
HOH
HOH
96
A
HOH
36
2
HOH
HOH
97
A
HOH
37
2
HOH
HOH
98
A
HOH
38
2
HOH
HOH
99
A
HOH
39
2
HOH
HOH
100
A
HOH
40
2
HOH
HOH
101
A
HOH
41
2
HOH
HOH
102
A
HOH
42
2
HOH
HOH
103
A
HOH
43
2
HOH
HOH
104
A
HOH
44
2
HOH
HOH
105
A
HOH
46
2
HOH
HOH
106
A
HOH
47
2
HOH
HOH
107
A
HOH
48
2
HOH
HOH
108
A
HOH
49
2
HOH
HOH
109
A
HOH
50
2
HOH
HOH
110
A
HOH
51
2
HOH
HOH
111
A
HOH
53
2
HOH
HOH
112
A
HOH
54
2
HOH
HOH
113
A
HOH
55
2
HOH
HOH
114
A
HOH
56
2
HOH
HOH
115
A
HOH
57
2
HOH
HOH
116
A
HOH
58
2
HOH
HOH
117
A
HOH
59
2
HOH
HOH
118
A
HOH
60
2
HOH
HOH
119
A
HOH
61
2
HOH
HOH
120
A
HOH
62
2
HOH
HOH
121
A
HOH
63
2
HOH
HOH
122
A
HOH
64
2
HOH
HOH
123
A
HOH
65
2
HOH
HOH
124
A
HOH
66
2
HOH
HOH
125
A
HOH
67
2
HOH
HOH
126
A
HOH
68
2
HOH
HOH
127
A
HOH
69
2
HOH
HOH
128
A
HOH
70
2
HOH
HOH
129
A
HOH
71
2
HOH
HOH
130
A
HOH
72
2
HOH
HOH
131
A
HOH
73
2
HOH
HOH
132
A
HOH
74
2
HOH
HOH
133
A
HOH
75
2
HOH
HOH
134
A
HOH
76
2
HOH
HOH
135
A
HOH
77
2
HOH
HOH
136
A
HOH
78
2
HOH
HOH
137
A
HOH
79
2
HOH
HOH
138
A
HOH
80
2
HOH
HOH
139
A
HOH
81
2
HOH
HOH
140
A
HOH
82
2
HOH
HOH
141
A
HOH
83
2
HOH
HOH
142
A
HOH
84
2
HOH
HOH
143
A
HOH
85
2
HOH
HOH
144
A
HOH
86
2
HOH
HOH
145
A
HOH
87
2
HOH
HOH
146
A
HOH
88
2
HOH
HOH
147
A
HOH
89
2
HOH
HOH
148
A
HOH
90
2
HOH
HOH
149
A
MET
1
n
1
MET
1
A
GLY
2
n
2
GLY
2
A
THR
3
n
3
THR
3
A
GLY
4
n
4
GLY
4
A
LYS
5
n
5
LYS
5
A
GLU
6
n
6
GLU
6
A
LEU
7
n
7
LEU
7
A
VAL
8
n
8
VAL
8
A
LEU
9
n
9
LEU
9
A
ALA
10
n
10
ALA
10
A
LEU
11
n
11
LEU
11
A
TYR
12
n
12
TYR
12
A
ASP
13
n
13
ASP
13
A
TYR
14
n
14
TYR
14
A
GLN
15
n
15
GLN
15
A
GLU
16
n
16
GLU
16
A
LYS
17
n
17
LYS
17
A
SER
18
n
18
SER
18
A
PRO
19
n
19
PRO
19
A
ARG
20
n
20
ARG
20
A
GLU
21
n
21
GLU
21
A
VAL
22
n
22
VAL
22
A
THR
23
n
23
THR
23
A
MET
24
n
24
MET
24
A
LYS
25
n
25
LYS
25
A
LYS
26
n
26
LYS
26
A
GLY
27
n
27
GLY
27
A
ASP
28
n
28
ASP
28
A
ILE
29
n
29
ILE
29
A
LEU
30
n
30
LEU
30
A
THR
31
n
31
THR
31
A
LEU
32
n
32
LEU
32
A
LEU
33
n
33
LEU
33
A
ASN
34
n
34
ASN
34
A
SER
35
n
35
SER
35
A
THR
36
n
36
THR
36
A
ASN
37
n
37
ASN
37
A
LYS
38
n
38
LYS
38
A
ASP
39
n
39
ASP
39
A
TRP
40
n
40
TRP
40
A
TRP
41
n
41
TRP
41
A
LYS
42
n
42
LYS
42
A
VAL
43
n
43
VAL
43
A
GLU
44
n
44
GLU
44
A
VAL
45
n
45
VAL
45
A
ASN
46
n
46
ASN
46
A
ASP
47
n
47
ASP
47
A
ARG
48
n
48
ARG
48
A
GLN
49
n
49
GLN
49
A
GLY
50
n
50
GLY
50
A
PHE
51
n
51
PHE
51
A
VAL
52
n
52
VAL
52
A
PRO
53
n
53
PRO
53
A
ALA
54
n
54
ALA
54
A
ALA
55
n
55
ALA
55
A
TYR
56
n
56
TYR
56
A
VAL
57
n
57
VAL
57
A
LYS
58
n
58
LYS
58
A
LYS
59
n
59
LYS
59
A
LEU
60
n
60
LEU
60
A
ASP
61
n
61
ASP
61
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LYS
58
A
O
LYS
58
A
N
LEU
9
A
N
LEU
9
A
O
VAL
8
A
O
VAL
8
A
N
LEU
30
A
N
LEU
30
A
O
THR
31
A
O
THR
31
A
N
GLU
44
A
N
GLU
44
A
O
TRP
41
A
O
TRP
41
A
N
VAL
52
A
N
VAL
52
1
22.11
2.60
111.60
133.71
A
A
A
CB
CG
CD
GLN
GLN
GLN
15
15
15
B
B
B
N
1
5.48
0.90
118.30
123.78
A
A
A
CB
CG
OD1
ASP
ASP
ASP
39
39
39
N
1
-4.18
0.60
121.00
116.82
A
A
A
CB
CG
CD2
TYR
TYR
TYR
56
56
56
N
1
A
ASN
46
57.49
-101.87
22.9
THE N-TERMINUS HAD PROBABLY AN ALTERNATIVE CONFORMATION,
BUT THE DENSITY WAS NOT CLEAR ENOUGH FOR MODELLING.
0.2460000
0.1870000
0.1890000
1.77
14.5
335
7159
5
99.8
RANDOM
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
1SHG
1.77
14.5
88
592
0
0
504
0.011
0.02
0.029
0.04
0.028
0.05
1.223
2.000
2.094
2.500
1.569
2.500
2.375
2.500
0.02
0.03
0.094
0.15
0.195
0.500
0.263
0.500
0.217
0.500
3.7
5.0
15.0
15.0
48.6
20.0
15.0
18.9
1.77
15
1PWT
7163
0.0500000
1
25.1
6.1
99.8
0.2000000
1.77
1.8
5.9
96.8
phasing
AMoRE
refinement
REFMAC
data reduction
DENZO
data scaling
SCALEPACK
THERMODYNAMIC ANALYSIS OF ALPHA-SPECTRIN SH3 AND TWO OF ITS CIRCULAR PERMUTANTS WITH DIFFERENT LOOP LENGTHS: DISCERNING THE REASONS FOR RAPID FOLDING IN PROTEINS
1
N
N
2
N
N
A
ALA
54
A
ALA
54
HELX_P
A
TYR
56
A
TYR
56
5
1
3
CIRCULAR PERMUTANT
CIRCULAR PERMUTANT, SH3 DOMAIN, CYTOSKELETON
SPTA2_CHICK
UNP
1
1
P07751
MDPSGVKVLETAEDIQERRQQVLDRYHRFKELSSLRRQKLEDSYRFQFFQRDADELGKWIQEKLQIASDENYKDPSNLQG
KLQKHQAFEAEVQANSGAIVKLDETGNQMINEGHFASETIRTRLQELHRLWELLLEKMREKGVKLLQAQKLVQFLRECED
VMDWINDKEAIVTSEELGQDLEHVEVLQKKFEEFQTDLAAHEERVNEVNQFAGKLIQEQHPEEELIKSKQDEVNASWQRL
KGLAQQRQGKLFGAAEVQRFNRDVDETISWIKEKGQLMASDDFGRDLASVQALLRKHEGLERDLAAFHHKVKALCAEADR
LQQSHPINASQIQVKREELIANWEQIRTLAAERHARLNDSYRLQRFLADFRDLTSWVTEMKALINADELANDVAGAEALL
DRHQEHKGEIDAHEDSFRSADESGQALLAAGHYASDEVKEKLTILSDERSALLELWELRRQQYEQCMDLQLFYRDTEQVD
NWMSKQEAFLLNEDLGDSLDSVEALLKKHEDFEKSLSAQEEKITALDEFATKLIQNNHYAMDDVATRRDALLSRRNALHE
RAMKRRAQLADSFHLQQFFRDSDELKSWVNEKMKTATDEAYKDPSNLQGKVQKHQAFEAELSANQSRIDALEKAGQKLID
VNHYASDEVAARMNEVISLWKKLLEATELKGIKLREANQQQQFNRNVEDIELWLYEVEGHLASDDYGKDLTSVQNLQKKH
ALLEADVAAHQDPIDGITIQARQFQDAGHFDADNIKKKQEALVARYEALKDPMVARKQKLADSLRLQQLFRDIEDEETWI
REKEPIAASTNRGKDLIGVQNLLKKHQALQAEIAGHEPRIKAVTQKGNAMVEEGHFAAEDVKIKLNELNQKWDSLKAKAS
QRRQDLEDSLQAQQYFADANEAQSWMREKEPIVGSTDYGKDEDSAEALLKKHEALMSDLSAYGSSIQALREQAQSCRQQV
APTDDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQSASRENLLEEQG
SIALRQEQIDNQTLITKEVGSVSLRMKQVEELYHSLLELGEKRKGMLEKSCKKFMLFREANELQQWINEKEAALTNEEVG
ADLEQVEVLQKKFDDFQKDLKANESRLKDINKVANDLESEGLMAEEVQAVEHQEVYGMMPRDETDSKTVSPWKSARMMVH
TVATFNSIKELNERWRSLQQLAEERSQLLGSADEVQRFHRDADETKEWIEEKNQALNTDNYGHDLASVQALQRNDEGFER
DLAALGDKVNSLGETAQRLIQSHPELAEDLQEKCTELNQAWSSLGKRADQRKEKLGDSHDLQRFLSDFRDLMSWINGIRG
LVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGQQLLARGHYASPEIKEKLDILDQERTDLEKAWVQRRMM
LDQCLELQLFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAVLQSFADQLIAADHYAKG
VIANRRNEVLDRWRRLKAQMIEKRSKLGESQTLQQFSRDVDEIEAWISEKLQTASDESYKDPTNIQLSKLLSKHQKHQAF
EAELHANADRIRGVIEMGNPLIERGACAGSEDAVKARLAALADQWEFLVQKSSEKSQKLKEANKQQNFNTGIKDFDFWLS
EVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAA
RRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNT
IGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAF
ETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDENSAFLQFNWKADVVESWIGEK
ENSLKTDDYGRDLSSVQTLLTKQETFDAGLQAFQQEGIANITALKDQLLAAKHIQSKAIEVRHASLMKRWNQLLANSAAR
KKKLLEAQEHFRKVEDLFLTFAKKASAFNSWFENAEEDLTDPVRCNSLEEIKALREAHDAFRSSLSSAQADFNQLAELDR
QIKSFRVASNPYTWFTMEALEETWRNLQKIIKERELELQKEQRRQEENDKLRQEFAQHANAFHQWIQETRTYLLDGSCMV
EESGTLESQLEATKRKHQEIRAMRSQLKKIEDLGAAMEEALILDNKYTEHSTVGLAQQWDQLDQLGMRMQHNLEQQIQAR
NTTGVTEEALKEFSMMFKHFDKDKSGRLNHQEFKSCLRSLGYDLPMVEEGEPDPEFESILDTVDPNRDGHVSLQEYMAFM
ISRETENVKSSEEIESAFRALSSERKPYVTKEELYQNLTREQADYCISHMKPYMDGKGRELPSAYDYIEFTRSLFVN
967
1025
1PWT
3
61
P07751
A
1
3
61
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
57
A
VAL
57
A
LYS
59
A
LYS
59
A
LEU
7
A
LEU
7
A
ALA
10
A
ALA
10
A
ILE
29
A
ILE
29
A
ASN
34
A
ASN
34
A
TRP
40
A
TRP
40
A
VAL
45
A
VAL
45
A
ARG
48
A
ARG
48
A
PRO
53
A
PRO
53
19
P 21 21 21