0.023419
0.013521
0.000000
0.000000
0.027042
0.000000
0.000000
0.000000
0.008554
0.00000
0.00000
0.00000
Prudencio, M.
Rohovec, J.
Peters, J.A.
Tocheva, E.
Boulanger, M.J.
Murphy, M.E.
Hupkes, H.J.
Kosters, W.
Impagliazzo, A.
Ubbink, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
42.700
42.700
116.900
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Y 2
88.906
YTTRIUM ION
non-polymer
C18 H33 N5 O8 S2
511.613
7,10,13-TRI(CARBOXYMETHYL)-5,15-DIOXO-4,7,10,13,16-PENTAAZA-1,19-DITHIANONADECANE
non-polymer
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
S
N
305
N
O
N
306
N
O
N
307
N
O
N
308
N
O
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
R
C
N
314
N
O
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
N
337
N
O
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
N
355
N
C
N
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
Y
N
370
N
O
N
371
N
C
N
372
N
O
N
373
N
C
N
374
N
N
N
375
N
C
N
376
N
C
N
377
N
N
N
378
N
C
N
379
N
C
N
380
N
N
N
381
N
C
N
382
N
C
N
383
N
S
N
384
N
O
N
385
N
C
N
386
N
C
N
387
N
O
N
388
N
O
N
389
N
C
N
390
N
C
N
391
N
N
N
392
N
C
N
393
N
C
N
394
N
O
N
395
N
O
N
396
N
C
N
397
N
C
N
398
N
O
N
399
N
N
N
400
N
C
N
401
N
C
N
402
N
S
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
doub
N
326
N
sing
Y
327
N
doub
N
328
N
sing
Y
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
doub
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
doub
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
GE
Chemistry
0947-6539
10
3252
3260
10.1002/chem.200306019
15224334
A caged lanthanide complex as a paramagnetic shift agent for protein NMR.
2004
10.2210/pdb1py0/pdb
pdb_00001py0
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
Osmic confocal max-flux optical mirrors
IMAGE PLATE
2003-03-16
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU300
13489.726
Pseudoazurin
E51C, E54C
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
88.906
YTTRIUM ION
1
syn
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
511.613
7,10,13-TRI(CARBOXYMETHYL)-5,15-DIOXO-4,7,10,13,16-PENTAAZA-1,19-DITHIANONADECANE
1
syn
non-polymer
18.015
water
71
nat
water
Cupredoxin, Blue copper protein
no
no
ASENIEVHMLNKGAEGAMVFEPAYIKANPGDTVTFIPVDKGHNVESIKDMIPCGACKFKSKINENYVLTVTQPGAYLVKC
TPHYAMGMIALIAVGDSPANLDQIVSAKKPKIVQERLEKVIASAK
ASENIEVHMLNKGAEGAMVFEPAYIKANPGDTVTFIPVDKGHNVESIKDMIPCGACKFKSKINENYVLTVTQPGAYLVKC
TPHYAMGMIALIAVGDSPANLDQIVSAKKPKIVQERLEKVIASAK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Alcaligenes
S-6
Escherichia
Escherichia coli
sample
511
Alcaligenes faecalis
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
Plasmid
pET24c
1
2.28
46.07
VAPOR DIFFUSION, HANGING DROP
6.5
2.4M ammonium sulfate, 50mM sodium phosphate buffer, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
291
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Data collection
Refinement description
1
0
2004-12-07
1
1
2008-04-29
1
2
2011-07-13
1
3
2021-10-27
1
4
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2003-07-07
REL
ZN
ZINC ION
Y1
YTTRIUM ION
SO4
SULFATE ION
YMA
7,10,13-TRI(CARBOXYMETHYL)-5,15-DIOXO-4,7,10,13,16-PENTAAZA-1,19-DITHIANONADECANE
HOH
water
1PAZ
PDB entry 1PAZ
PDB
experimental model
ZN
121
2
ZN
ZN
124
A
Y
122
3
Y1
Y1
125
A
SO4
123
4
SO4
SO4
126
A
YMA
195
5
YMA
YMA
195
A
HOH
124
6
HOH
HOH
196
A
HOH
125
6
HOH
HOH
197
A
HOH
126
6
HOH
HOH
198
A
HOH
127
6
HOH
HOH
199
A
HOH
128
6
HOH
HOH
200
A
HOH
129
6
HOH
HOH
201
A
HOH
130
6
HOH
HOH
202
A
HOH
131
6
HOH
HOH
203
A
HOH
132
6
HOH
HOH
204
A
HOH
133
6
HOH
HOH
205
A
HOH
134
6
HOH
HOH
206
A
HOH
135
6
HOH
HOH
207
A
HOH
136
6
HOH
HOH
208
A
HOH
137
6
HOH
HOH
209
A
HOH
138
6
HOH
HOH
210
A
HOH
139
6
HOH
HOH
211
A
HOH
140
6
HOH
HOH
212
A
HOH
141
6
HOH
HOH
213
A
HOH
142
6
HOH
HOH
214
A
HOH
143
6
HOH
HOH
215
A
HOH
144
6
HOH
HOH
216
A
HOH
145
6
HOH
HOH
217
A
HOH
146
6
HOH
HOH
218
A
HOH
147
6
HOH
HOH
219
A
HOH
148
6
HOH
HOH
220
A
HOH
149
6
HOH
HOH
221
A
HOH
150
6
HOH
HOH
222
A
HOH
151
6
HOH
HOH
223
A
HOH
152
6
HOH
HOH
224
A
HOH
153
6
HOH
HOH
225
A
HOH
154
6
HOH
HOH
226
A
HOH
155
6
HOH
HOH
227
A
HOH
156
6
HOH
HOH
228
A
HOH
157
6
HOH
HOH
229
A
HOH
158
6
HOH
HOH
230
A
HOH
159
6
HOH
HOH
231
A
HOH
160
6
HOH
HOH
232
A
HOH
161
6
HOH
HOH
233
A
HOH
162
6
HOH
HOH
234
A
HOH
163
6
HOH
HOH
235
A
HOH
164
6
HOH
HOH
236
A
HOH
165
6
HOH
HOH
237
A
HOH
166
6
HOH
HOH
238
A
HOH
167
6
HOH
HOH
239
A
HOH
168
6
HOH
HOH
240
A
HOH
169
6
HOH
HOH
241
A
HOH
170
6
HOH
HOH
242
A
HOH
171
6
HOH
HOH
243
A
HOH
172
6
HOH
HOH
244
A
HOH
173
6
HOH
HOH
245
A
HOH
174
6
HOH
HOH
246
A
HOH
175
6
HOH
HOH
247
A
HOH
176
6
HOH
HOH
248
A
HOH
177
6
HOH
HOH
249
A
HOH
178
6
HOH
HOH
250
A
HOH
179
6
HOH
HOH
251
A
HOH
180
6
HOH
HOH
252
A
HOH
181
6
HOH
HOH
253
A
HOH
182
6
HOH
HOH
254
A
HOH
183
6
HOH
HOH
255
A
HOH
184
6
HOH
HOH
256
A
HOH
185
6
HOH
HOH
257
A
HOH
186
6
HOH
HOH
258
A
HOH
187
6
HOH
HOH
259
A
HOH
188
6
HOH
HOH
260
A
HOH
189
6
HOH
HOH
261
A
HOH
190
6
HOH
HOH
262
A
HOH
191
6
HOH
HOH
263
A
HOH
192
6
HOH
HOH
264
A
HOH
193
6
HOH
HOH
265
A
HOH
194
6
HOH
HOH
266
A
ALA
-1
n
1
ALA
-1
A
SER
0
n
2
SER
0
A
GLU
1
n
3
GLU
1
A
ASN
2
n
4
ASN
2
A
ILE
3
n
5
ILE
3
A
GLU
4
n
6
GLU
4
A
VAL
5
n
7
VAL
5
A
HIS
6
n
8
HIS
6
A
MET
7
n
9
MET
7
A
LEU
8
n
10
LEU
8
A
ASN
9
n
11
ASN
9
A
LYS
10
n
12
LYS
10
A
GLY
11
n
13
GLY
11
A
ALA
12
n
14
ALA
12
A
GLU
13
n
15
GLU
13
A
GLY
14
n
16
GLY
14
A
ALA
15
n
17
ALA
15
A
MET
16
n
18
MET
16
A
VAL
17
n
19
VAL
17
A
PHE
18
n
20
PHE
18
A
GLU
19
n
21
GLU
19
A
PRO
20
n
22
PRO
20
A
ALA
21
n
23
ALA
21
A
TYR
22
n
24
TYR
22
A
ILE
23
n
25
ILE
23
A
LYS
24
n
26
LYS
24
A
ALA
25
n
27
ALA
25
A
ASN
26
n
28
ASN
26
A
PRO
27
n
29
PRO
27
A
GLY
28
n
30
GLY
28
A
ASP
29
n
31
ASP
29
A
THR
30
n
32
THR
30
A
VAL
31
n
33
VAL
31
A
THR
32
n
34
THR
32
A
PHE
33
n
35
PHE
33
A
ILE
34
n
36
ILE
34
A
PRO
35
n
37
PRO
35
A
VAL
36
n
38
VAL
36
A
ASP
37
n
39
ASP
37
A
LYS
38
n
40
LYS
38
A
GLY
39
n
41
GLY
39
A
HIS
40
n
42
HIS
40
A
ASN
41
n
43
ASN
41
A
VAL
42
n
44
VAL
42
A
GLU
43
n
45
GLU
43
A
SER
44
n
46
SER
44
A
ILE
45
n
47
ILE
45
A
LYS
46
n
48
LYS
46
A
ASP
47
n
49
ASP
47
A
MET
48
n
50
MET
48
A
ILE
49
n
51
ILE
49
A
PRO
50
n
52
PRO
50
A
CYS
51
n
53
CYS
51
A
GLY
52
n
54
GLY
52
A
ALA
53
n
55
ALA
53
A
CYS
54
n
56
CYS
54
A
LYS
55
n
57
LYS
55
A
PHE
56
n
58
PHE
56
A
LYS
57
n
59
LYS
57
A
SER
58
n
60
SER
58
A
LYS
59
n
61
LYS
59
A
ILE
60
n
62
ILE
60
A
ASN
61
n
63
ASN
61
A
GLU
62
n
64
GLU
62
A
ASN
63
n
65
ASN
63
A
TYR
64
n
66
TYR
64
A
VAL
65
n
67
VAL
65
A
LEU
66
n
68
LEU
66
A
THR
67
n
69
THR
67
A
VAL
68
n
70
VAL
68
A
THR
69
n
71
THR
69
A
GLN
70
n
72
GLN
70
A
PRO
71
n
73
PRO
71
A
GLY
72
n
74
GLY
72
A
ALA
73
n
75
ALA
73
A
TYR
74
n
76
TYR
74
A
LEU
75
n
77
LEU
75
A
VAL
76
n
78
VAL
76
A
LYS
77
n
79
LYS
77
A
CYS
78
n
80
CYS
78
A
THR
79
n
81
THR
79
A
PRO
80
n
82
PRO
80
A
HIS
81
n
83
HIS
81
A
TYR
82
n
84
TYR
82
A
ALA
83
n
85
ALA
83
A
MET
84
n
86
MET
84
A
GLY
85
n
87
GLY
85
A
MET
86
n
88
MET
86
A
ILE
87
n
89
ILE
87
A
ALA
88
n
90
ALA
88
A
LEU
89
n
91
LEU
89
A
ILE
90
n
92
ILE
90
A
ALA
91
n
93
ALA
91
A
VAL
92
n
94
VAL
92
A
GLY
93
n
95
GLY
93
A
ASP
94
n
96
ASP
94
A
SER
95
n
97
SER
95
A
PRO
96
n
98
PRO
96
A
ALA
97
n
99
ALA
97
A
ASN
98
n
100
ASN
98
A
LEU
99
n
101
LEU
99
A
ASP
100
n
102
ASP
100
A
GLN
101
n
103
GLN
101
A
ILE
102
n
104
ILE
102
A
VAL
103
n
105
VAL
103
A
SER
104
n
106
SER
104
A
ALA
105
n
107
ALA
105
A
LYS
106
n
108
LYS
106
A
LYS
107
n
109
LYS
107
A
PRO
108
n
110
PRO
108
A
LYS
109
n
111
LYS
109
A
ILE
110
n
112
ILE
110
A
VAL
111
n
113
VAL
111
A
GLN
112
n
114
GLN
112
A
GLU
113
n
115
GLU
113
A
ARG
114
n
116
ARG
114
A
LEU
115
n
117
LEU
115
A
GLU
116
n
118
GLU
116
A
LYS
117
n
119
LYS
117
A
VAL
118
n
120
VAL
118
A
ILE
119
n
121
ILE
119
A
ALA
120
n
122
ALA
120
A
n
123
121
A
n
124
122
A
n
125
123
A
author_defined_assembly
1
monomeric
A
HIS
40
A
ND1
HIS
42
1_555
A
ZN
124
B
ZN
ZN
1_555
A
CYS
78
A
SG
CYS
80
1_555
129.3
A
HIS
40
A
ND1
HIS
42
1_555
A
ZN
124
B
ZN
ZN
1_555
A
HIS
81
A
ND1
HIS
83
1_555
100.3
A
CYS
78
A
SG
CYS
80
1_555
A
ZN
124
B
ZN
ZN
1_555
A
HIS
81
A
ND1
HIS
83
1_555
110.4
A
HIS
40
A
ND1
HIS
42
1_555
A
ZN
124
B
ZN
ZN
1_555
A
MET
86
A
SD
MET
88
1_555
90.4
A
CYS
78
A
SG
CYS
80
1_555
A
ZN
124
B
ZN
ZN
1_555
A
MET
86
A
SD
MET
88
1_555
110.9
A
HIS
81
A
ND1
HIS
83
1_555
A
ZN
124
B
ZN
ZN
1_555
A
MET
86
A
SD
MET
88
1_555
114.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLU
19
A
O
GLU
21
A
N
HIS
6
A
N
HIS
8
A
N
VAL
5
A
N
VAL
7
A
O
THR
32
A
O
THR
34
A
N
PHE
33
A
N
PHE
35
A
O
TYR
64
A
O
TYR
66
A
N
ILE
23
A
N
ILE
25
A
O
LEU
89
A
O
LEU
91
A
O
VAL
92
A
O
VAL
94
A
N
GLY
72
A
N
GLY
74
A
O
LYS
77
A
O
LYS
79
A
N
GLU
43
A
N
GLU
45
1
A
SER
121
A
SER
123
1
Y
1
A
ALA
122
A
ALA
124
1
Y
1
A
LYS
123
A
LYS
125
1
Y
1
A
A
ALA
TYR
21
22
134.26
1
A
MET
16
55.92
78.37
28.290
0.11
0.06
0.00
0.11
0.00
-0.17
0.947
0.926
0.23182
0.19299
0.19614
2.00
37.01
573
6540
8.1
87.13
4.567
0.128
RANDOM, EXCLUDING REFLECTIONS RELATED BY TWIN OPERATOR
1
Isotropic
THROUGHOUT
MOLECULAR REPLACEMENT
0.272
0.198
0.80
0.80
1.40
PDB entry 1PAZ
BABINET MODEL WITH MASK
2.00
37.01
71
1032
40
0
921
0.016
0.022
980
1.970
2.007
1317
13.784
5.000
121
0.108
0.200
150
0.006
0.020
712
0.210
0.200
457
0.152
0.200
78
0.229
0.200
32
0.055
0.200
3
0.802
1.500
610
1.431
2.000
989
2.791
3.000
370
4.357
4.500
328
0.276
0.242
2.052
39
446
815
20
28.5
2.0
37.0
1PY0
39506
0.057
1
25.3
4.2
99.2
0.34
2.0
2.07
5.4
815
4
99.1
refinement
REFMAC
5.1.24
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
Crystal structure of E51C/E54C Psaz from A.faecalis with CLaNP probe
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
A
HIS
81
A
HIS
83
HELX_P
A
GLY
85
A
GLY
87
5
1
5
A
ASN
98
A
ASN
100
HELX_P
A
ALA
105
A
ALA
107
1
2
8
A
PRO
108
A
PRO
110
HELX_P
A
ALA
120
A
ALA
122
1
3
13
covale
2.032
none
A
CYS
51
A
SG
CYS
53
1_555
A
YMA
195
E
S1
YMA
1_555
covale
1.990
none
A
CYS
54
A
SG
CYS
56
1_555
A
YMA
195
E
S2
YMA
1_555
metalc
2.098
A
HIS
40
A
ND1
HIS
42
1_555
A
ZN
124
B
ZN
ZN
1_555
metalc
2.287
A
CYS
78
A
SG
CYS
80
1_555
A
ZN
124
B
ZN
ZN
1_555
metalc
2.082
A
HIS
81
A
ND1
HIS
83
1_555
A
ZN
124
B
ZN
ZN
1_555
metalc
2.573
A
MET
86
A
SD
MET
88
1_555
A
ZN
124
B
ZN
ZN
1_555
ELECTRON TRANSPORT
cupredoxin, NMR probe, ELECTRON TRANSPORT
A
GLU
19
A
GLU
21
1
A
PRO
20
A
PRO
22
0.86
AZUP_ALCFA
UNP
1
24
P04377
ENIEVHMLNKGAEGAMVFEPAYIKANPGDTVTFIPVDKGHNVESIKDMIPEGAEKFKSKINENYVLTVTQPGAYLVKCTP
HYAMGMIALIAVGDSPANLDQIVSAKKPKIVQERLEKVIASAK
24
146
1PY0
1
123
P04377
A
1
3
125
1
cloning artifact
ALA
-1
1PY0
A
P04377
UNP
1
1
cloning artifact
SER
0
1PY0
A
P04377
UNP
2
1
GLU
engineered mutation
CYS
51
1PY0
A
P04377
UNP
74
53
1
GLU
engineered mutation
CYS
54
1PY0
A
P04377
UNP
77
56
4
4
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLY
14
A
GLY
16
A
GLU
19
A
GLU
21
A
ASN
2
A
ASN
4
A
GLY
11
A
GLY
13
A
ASP
29
A
ASP
31
A
PRO
35
A
PRO
37
A
TYR
64
A
TYR
66
A
VAL
68
A
VAL
70
A
TYR
22
A
TYR
24
A
ALA
25
A
ALA
27
A
ILE
87
A
ILE
89
A
VAL
92
A
VAL
94
A
GLY
72
A
GLY
74
A
LYS
77
A
LYS
79
A
GLU
43
A
GLU
45
A
SER
44
A
SER
46
BINDING SITE FOR RESIDUE ZN A 124
A
ZN
124
Software
4
BINDING SITE FOR RESIDUE Y1 A 125
A
Y1
125
Software
1
BINDING SITE FOR RESIDUE SO4 A 126
A
SO4
126
Software
4
BINDING SITE FOR RESIDUE YMA A 195
A
YMA
195
Software
9
A
HIS
40
A
HIS
42
4
1_555
A
CYS
78
A
CYS
80
4
1_555
A
HIS
81
A
HIS
83
4
1_555
A
MET
86
A
MET
88
4
1_555
A
YMA
195
E
YMA
1
1_555
A
LYS
55
A
LYS
57
4
1_555
A
PRO
108
A
PRO
110
4
6_654
A
LYS
109
A
LYS
111
4
6_654
A
HOH
224
F
HOH
4
1_555
A
CYS
51
A
CYS
53
9
1_555
A
GLY
52
A
GLY
54
9
1_555
A
ALA
53
A
ALA
55
9
1_555
A
CYS
54
A
CYS
56
9
1_555
A
ASN
63
A
ASN
65
9
5_455
A
GLU
113
A
GLU
115
9
6_654
A
GLU
116
A
GLU
118
9
6_654
A
Y1
125
C
Y1
9
1_555
A
HOH
265
F
HOH
9
1_555
170
P 65