0.018587
0.000000
0.000000
0.000000
0.010799
0.000000
0.000000
0.000000
0.005724
0.00000
0.00000
0.00000
CIS PROLINE - PRO A 49
CIS PROLINE - PRO B 49
Marmorstein, R.
Harrison, S.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
53.800
92.600
174.700
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
S
C
N
288
N
C
N
289
N
C
N
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
C
N
335
N
N
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
N
357
N
C
N
358
N
S
N
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
N
N
396
S
C
N
397
N
C
N
398
N
O
N
399
N
C
N
400
N
C
N
401
N
C
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
N
N
413
S
C
N
414
N
C
N
415
N
O
N
416
N
C
N
417
N
O
N
418
N
O
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
N
N
427
S
C
N
428
N
C
N
429
N
O
N
430
R
C
N
431
N
O
N
432
N
C
N
433
N
O
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
N
N
444
S
C
N
445
N
C
N
446
N
O
N
447
N
C
Y
448
N
C
Y
449
N
C
Y
450
N
C
Y
451
N
C
Y
452
N
C
Y
453
N
C
N
454
N
O
N
455
N
O
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
N
N
468
S
C
N
469
N
C
N
470
N
O
N
471
N
C
N
472
N
C
N
473
N
C
N
474
N
O
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
Y
376
N
doub
Y
377
N
sing
Y
378
N
sing
N
379
N
sing
Y
380
N
doub
N
381
N
sing
Y
382
N
doub
N
383
N
sing
Y
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
doub
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
doub
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
doub
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
Y
445
N
doub
Y
446
N
sing
Y
447
N
sing
N
448
N
sing
Y
449
N
doub
N
450
N
sing
Y
451
N
doub
N
452
N
sing
Y
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
doub
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
US
Genes Dev.
GEDEEP
2056
0890-9369
8
2504
2512
7958913
Crystal structure of a PPR1-DNA complex: DNA recognition by proteins containing a Zn2Cys6 binuclear cluster.
1994
UK
Nature
NATUAS
0006
0028-0836
356
408
DNA Recognition by GAL4: Structure of a Protein-DNA Complex
1992
10.2210/pdb1pyi/pdb
pdb_00001pyi
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
AREA DETECTOR
1993-10-09
XENTRONICS
M
x-ray
1
1.0
4280.792
DNA (5'-D(*TP*CP*GP*GP*CP*AP*AP*TP*TP*GP*CP*CP*GP*A)-3')
2
syn
polymer
10956.896
PROTEIN (PYRIMIDINE PATHWAY REGULATOR 1)
2
man
polymer
65.409
ZINC ION
4
syn
non-polymer
18.015
water
1
nat
water
no
no
(DT)(DC)(DG)(DG)(DC)(DA)(DA)(DT)(DT)(DG)(DC)(DC)(DG)(DA)
TCGGCAATTGCCGA
D,E
polydeoxyribonucleotide
no
no
MKSRTACKRCRLKKIKCDQEFPSCKRCAKLEVPCVSLDPATGKDVPRSYVFFLEDRLAVMMRVLKEYGVDPTKIRGNIPA
TSDDEPFDLKKYSSVS
MKSRTACKRCRLKKIKCDQEFPSCKRCAKLEVPCVSLDPATGKDVPRSYVFFLEDRLAVMMRVLKEYGVDPTKIRGNIPA
TSDDEPFDLKKYSSVS
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
baker's yeast
Saccharomyces
Escherichia
sample
YSCPPR1 (ACCESSION X01739)
4932
Saccharomyces cerevisiae
BL21 (PLYSS)
YSCPPR1 (ACCESSION X01739)
562
Escherichia coli
PRSETA
3.53
55.0000
-14.254
1
20
D
1
E
28
9.502
D_DT1:DA28_E
1
-0.452
0.097
0.155
-0.112
-18.479
1
19
D
2
E
27
3.604
D_DC2:DG27_E
2
-4.519
0.767
0.459
-0.303
-17.141
1
19
D
3
E
26
5.933
D_DG3:DC26_E
3
-23.805
-0.892
-0.104
-0.177
-21.763
1
19
D
4
E
25
-5.751
D_DG4:DC25_E
4
-0.489
-0.386
-1.436
-0.390
4.743
1
D
6
E
23
17.279
D_DA6:DT23_E
5
-11.987
-1.075
0.069
0.174
5.091
1
20
D
7
E
22
1.739
D_DA7:DT22_E
6
-32.221
1.142
0.003
-0.362
-3.118
1
20
D
8
E
21
5.637
D_DT8:DA21_E
7
-9.170
0.084
0.012
-0.445
-32.105
1
19
D
10
E
19
-1.094
D_DG10:DC19_E
8
-10.890
-0.243
-1.023
-0.063
4.348
1
19
D
11
E
18
-5.210
D_DC11:DG18_E
9
3.401
0.269
-0.027
-0.411
-0.728
1
19
D
12
E
17
-4.301
D_DC12:DG17_E
10
-15.509
0.434
0.114
-0.605
1.840
1
19
D
13
E
16
-0.729
D_DG13:DC16_E
11
4.587
-0.807
0.167
-0.598
-4.497
1
20
D
14
E
15
-8.102
D_DA14:DT15_E
12
-2.919
-0.904
-0.175
-0.480
3.433
37.810
D
D
1
2
12.131
E
E
28
27
3.467
7.808
-0.390
0.132
DD_DT1DC2:DG27DA28_EE
1
-0.995
1.546
37.011
-0.868
0.465
2.872
31.223
D
D
2
3
0.750
E
E
27
26
3.023
0.403
-1.392
1.113
DD_DC2DG3:DC26DG27_EE
2
3.404
-6.337
31.039
1.999
3.171
3.937
37.408
D
D
3
4
3.904
E
E
26
25
3.804
2.496
1.123
0.529
DD_DG3DG4:DC25DC26_EE
3
4.618
-7.223
37.051
0.434
-1.029
5.870
68.389
D
D
4
6
12.858
E
E
25
23
5.693
14.322
0.046
1.817
DD_DG4DA6:DT23DC25_EE
4
-10.658
9.568
66.293
0.650
-0.761
3.282
46.564
D
D
6
7
-10.690
E
E
23
22
3.483
-8.407
-0.805
0.680
DD_DA6DA7:DT22DT23_EE
5
1.905
-2.423
45.803
1.597
1.186
3.277
27.511
D
D
7
8
-1.394
E
E
22
21
3.273
-0.663
0.565
-0.624
DD_DA7DT8:DA21DT22_EE
6
-0.453
0.952
27.499
-1.150
-1.300
7.325
79.741
D
D
8
10
4.492
E
E
21
19
7.414
5.745
-0.374
0.055
DD_DT8DG10:DC19DA21_EE
7
9.862
-7.710
79.056
-0.304
0.888
1.987
33.461
D
D
10
11
9.919
E
E
19
18
2.212
5.631
0.550
-0.015
DD_DG10DC11:DG18DC19_EE
8
-8.084
14.240
32.018
-0.636
-1.832
3.487
35.199
D
D
11
12
-9.596
E
E
18
17
3.583
-5.777
-1.775
0.740
DD_DC11DC12:DG17DG18_EE
9
-1.455
2.417
34.707
2.161
2.699
3.418
25.911
D
D
12
13
-6.385
E
E
17
16
3.335
-2.854
1.932
0.451
DD_DC12DG13:DC16DG17_EE
10
2.225
-4.979
25.661
1.824
-3.669
3.070
31.926
D
D
13
14
24.410
E
E
16
15
3.511
13.044
-0.690
-0.257
DD_DG13DA14:DT15DC16_EE
11
1.868
-3.495
29.144
-2.965
1.612
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
1995-02-27
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
BNL
1995-01-04
REL
REL
ZN
ZINC ION
HOH
water
ZN
21
3
ZN
ZN
21
A
ZN
22
3
ZN
ZN
22
A
ZN
321
3
ZN
ZN
321
B
ZN
322
3
ZN
ZN
322
B
HOH
501
4
HOH
HOH
501
E
T
1
n
1
DT
1
D
C
2
n
2
DC
2
D
G
3
n
3
DG
3
D
G
4
n
4
DG
4
D
C
5
n
5
DC
5
D
A
6
n
6
DA
6
D
A
7
n
7
DA
7
D
T
8
n
8
DT
8
D
T
9
n
9
DT
9
D
G
10
n
10
DG
10
D
C
11
n
11
DC
11
D
C
12
n
12
DC
12
D
G
13
n
13
DG
13
D
A
14
n
14
DA
14
D
T
15
n
1
DT
15
E
C
16
n
2
DC
16
E
G
17
n
3
DG
17
E
G
18
n
4
DG
18
E
C
19
n
5
DC
19
E
A
20
n
6
DA
20
E
A
21
n
7
DA
21
E
T
22
n
8
DT
22
E
T
23
n
9
DT
23
E
G
24
n
10
DG
24
E
C
25
n
11
DC
25
E
C
26
n
12
DC
26
E
G
27
n
13
DG
27
E
A
28
n
14
DA
28
E
n
1
28
A
n
2
29
A
SER
30
n
3
SER
30
A
ARG
31
n
4
ARG
31
A
THR
32
n
5
THR
32
A
ALA
33
n
6
ALA
33
A
CYS
34
n
7
CYS
34
A
LYS
35
n
8
LYS
35
A
ARG
36
n
9
ARG
36
A
CYS
37
n
10
CYS
37
A
ARG
38
n
11
ARG
38
A
LEU
39
n
12
LEU
39
A
LYS
40
n
13
LYS
40
A
LYS
41
n
14
LYS
41
A
ILE
42
n
15
ILE
42
A
LYS
43
n
16
LYS
43
A
CYS
44
n
17
CYS
44
A
ASP
45
n
18
ASP
45
A
GLN
46
n
19
GLN
46
A
GLU
47
n
20
GLU
47
A
PHE
48
n
21
PHE
48
A
PRO
49
n
22
PRO
49
A
SER
50
n
23
SER
50
A
CYS
51
n
24
CYS
51
A
LYS
52
n
25
LYS
52
A
ARG
53
n
26
ARG
53
A
CYS
54
n
27
CYS
54
A
ALA
55
n
28
ALA
55
A
LYS
56
n
29
LYS
56
A
LEU
57
n
30
LEU
57
A
GLU
58
n
31
GLU
58
A
VAL
59
n
32
VAL
59
A
PRO
60
n
33
PRO
60
A
CYS
61
n
34
CYS
61
A
VAL
62
n
35
VAL
62
A
SER
63
n
36
SER
63
A
LEU
64
n
37
LEU
64
A
ASP
65
n
38
ASP
65
A
PRO
66
n
39
PRO
66
A
ALA
67
n
40
ALA
67
A
THR
68
n
41
THR
68
A
GLY
69
n
42
GLY
69
A
LYS
70
n
43
LYS
70
A
ASP
71
n
44
ASP
71
A
VAL
72
n
45
VAL
72
A
PRO
73
n
46
PRO
73
A
ARG
74
n
47
ARG
74
A
SER
75
n
48
SER
75
A
TYR
76
n
49
TYR
76
A
VAL
77
n
50
VAL
77
A
PHE
78
n
51
PHE
78
A
PHE
79
n
52
PHE
79
A
LEU
80
n
53
LEU
80
A
GLU
81
n
54
GLU
81
A
ASP
82
n
55
ASP
82
A
ARG
83
n
56
ARG
83
A
LEU
84
n
57
LEU
84
A
ALA
85
n
58
ALA
85
A
VAL
86
n
59
VAL
86
A
MET
87
n
60
MET
87
A
MET
88
n
61
MET
88
A
ARG
89
n
62
ARG
89
A
VAL
90
n
63
VAL
90
A
LEU
91
n
64
LEU
91
A
LYS
92
n
65
LYS
92
A
GLU
93
n
66
GLU
93
A
TYR
94
n
67
TYR
94
A
GLY
95
n
68
GLY
95
A
VAL
96
n
69
VAL
96
A
ASP
97
n
70
ASP
97
A
PRO
98
n
71
PRO
98
A
THR
99
n
72
THR
99
A
LYS
100
n
73
LYS
100
A
ILE
101
n
74
ILE
101
A
ARG
102
n
75
ARG
102
A
GLY
103
n
76
GLY
103
A
ASN
104
n
77
ASN
104
A
ILE
105
n
78
ILE
105
A
PRO
106
n
79
PRO
106
A
ALA
107
n
80
ALA
107
A
THR
108
n
81
THR
108
A
SER
109
n
82
SER
109
A
ASP
110
n
83
ASP
110
A
ASP
111
n
84
ASP
111
A
GLU
112
n
85
GLU
112
A
PRO
113
n
86
PRO
113
A
PHE
114
n
87
PHE
114
A
ASP
115
n
88
ASP
115
A
LEU
116
n
89
LEU
116
A
LYS
117
n
90
LYS
117
A
n
91
118
A
n
92
119
A
n
93
120
A
n
94
121
A
n
95
122
A
n
96
123
A
n
1
28
B
n
2
29
B
SER
30
n
3
SER
30
B
ARG
31
n
4
ARG
31
B
THR
32
n
5
THR
32
B
ALA
33
n
6
ALA
33
B
CYS
34
n
7
CYS
34
B
LYS
35
n
8
LYS
35
B
ARG
36
n
9
ARG
36
B
CYS
37
n
10
CYS
37
B
ARG
38
n
11
ARG
38
B
LEU
39
n
12
LEU
39
B
LYS
40
n
13
LYS
40
B
LYS
41
n
14
LYS
41
B
ILE
42
n
15
ILE
42
B
LYS
43
n
16
LYS
43
B
CYS
44
n
17
CYS
44
B
ASP
45
n
18
ASP
45
B
GLN
46
n
19
GLN
46
B
GLU
47
n
20
GLU
47
B
PHE
48
n
21
PHE
48
B
PRO
49
n
22
PRO
49
B
SER
50
n
23
SER
50
B
CYS
51
n
24
CYS
51
B
LYS
52
n
25
LYS
52
B
ARG
53
n
26
ARG
53
B
CYS
54
n
27
CYS
54
B
ALA
55
n
28
ALA
55
B
LYS
56
n
29
LYS
56
B
LEU
57
n
30
LEU
57
B
GLU
58
n
31
GLU
58
B
VAL
59
n
32
VAL
59
B
PRO
60
n
33
PRO
60
B
CYS
61
n
34
CYS
61
B
VAL
62
n
35
VAL
62
B
SER
63
n
36
SER
63
B
LEU
64
n
37
LEU
64
B
ASP
65
n
38
ASP
65
B
PRO
66
n
39
PRO
66
B
ALA
67
n
40
ALA
67
B
THR
68
n
41
THR
68
B
GLY
69
n
42
GLY
69
B
LYS
70
n
43
LYS
70
B
ASP
71
n
44
ASP
71
B
VAL
72
n
45
VAL
72
B
PRO
73
n
46
PRO
73
B
ARG
74
n
47
ARG
74
B
SER
75
n
48
SER
75
B
TYR
76
n
49
TYR
76
B
VAL
77
n
50
VAL
77
B
PHE
78
n
51
PHE
78
B
PHE
79
n
52
PHE
79
B
LEU
80
n
53
LEU
80
B
GLU
81
n
54
GLU
81
B
ASP
82
n
55
ASP
82
B
ARG
83
n
56
ARG
83
B
LEU
84
n
57
LEU
84
B
ALA
85
n
58
ALA
85
B
VAL
86
n
59
VAL
86
B
MET
87
n
60
MET
87
B
MET
88
n
61
MET
88
B
ARG
89
n
62
ARG
89
B
VAL
90
n
63
VAL
90
B
LEU
91
n
64
LEU
91
B
LYS
92
n
65
LYS
92
B
GLU
93
n
66
GLU
93
B
TYR
94
n
67
TYR
94
B
GLY
95
n
68
GLY
95
B
VAL
96
n
69
VAL
96
B
ASP
97
n
70
ASP
97
B
PRO
98
n
71
PRO
98
B
THR
99
n
72
THR
99
B
n
73
100
B
n
74
101
B
n
75
102
B
n
76
103
B
n
77
104
B
n
78
105
B
n
79
106
B
n
80
107
B
n
81
108
B
n
82
109
B
n
83
110
B
n
84
111
B
n
85
112
B
n
86
113
B
n
87
114
B
n
88
115
B
n
89
116
B
n
90
117
B
n
91
118
B
n
92
119
B
n
93
120
B
n
94
121
B
n
95
122
B
n
96
123
B
author_defined_assembly
4
tetrameric
A
CYS
34
C
SG
CYS
7
1_555
A
ZN
21
E
ZN
ZN
1_555
A
CYS
51
C
SG
CYS
24
1_555
99.7
A
CYS
34
C
SG
CYS
7
1_555
A
ZN
21
E
ZN
ZN
1_555
A
CYS
54
C
SG
CYS
27
1_555
102.3
A
CYS
51
C
SG
CYS
24
1_555
A
ZN
21
E
ZN
ZN
1_555
A
CYS
54
C
SG
CYS
27
1_555
115.8
A
CYS
34
C
SG
CYS
7
1_555
A
ZN
21
E
ZN
ZN
1_555
A
CYS
61
C
SG
CYS
34
1_555
119.1
A
CYS
51
C
SG
CYS
24
1_555
A
ZN
21
E
ZN
ZN
1_555
A
CYS
61
C
SG
CYS
34
1_555
100.9
A
CYS
54
C
SG
CYS
27
1_555
A
ZN
21
E
ZN
ZN
1_555
A
CYS
61
C
SG
CYS
34
1_555
118.2
A
CYS
34
C
SG
CYS
7
1_555
A
ZN
22
F
ZN
ZN
1_555
A
CYS
37
C
SG
CYS
10
1_555
93.6
A
CYS
34
C
SG
CYS
7
1_555
A
ZN
22
F
ZN
ZN
1_555
A
CYS
44
C
SG
CYS
17
1_555
126.9
A
CYS
37
C
SG
CYS
10
1_555
A
ZN
22
F
ZN
ZN
1_555
A
CYS
44
C
SG
CYS
17
1_555
120.4
A
CYS
34
C
SG
CYS
7
1_555
A
ZN
22
F
ZN
ZN
1_555
A
CYS
51
C
SG
CYS
24
1_555
98.1
A
CYS
37
C
SG
CYS
10
1_555
A
ZN
22
F
ZN
ZN
1_555
A
CYS
51
C
SG
CYS
24
1_555
117.2
A
CYS
44
C
SG
CYS
17
1_555
A
ZN
22
F
ZN
ZN
1_555
A
CYS
51
C
SG
CYS
24
1_555
100.0
B
CYS
34
D
SG
CYS
7
1_555
B
ZN
321
G
ZN
ZN
1_555
B
CYS
51
D
SG
CYS
24
1_555
98.5
B
CYS
34
D
SG
CYS
7
1_555
B
ZN
321
G
ZN
ZN
1_555
B
CYS
54
D
SG
CYS
27
1_555
96.1
B
CYS
51
D
SG
CYS
24
1_555
B
ZN
321
G
ZN
ZN
1_555
B
CYS
54
D
SG
CYS
27
1_555
99.5
B
CYS
34
D
SG
CYS
7
1_555
B
ZN
321
G
ZN
ZN
1_555
B
CYS
61
D
SG
CYS
34
1_555
115.5
B
CYS
51
D
SG
CYS
24
1_555
B
ZN
321
G
ZN
ZN
1_555
B
CYS
61
D
SG
CYS
34
1_555
116.1
B
CYS
54
D
SG
CYS
27
1_555
B
ZN
321
G
ZN
ZN
1_555
B
CYS
61
D
SG
CYS
34
1_555
126.2
B
CYS
34
D
SG
CYS
7
1_555
B
ZN
322
H
ZN
ZN
1_555
B
CYS
37
D
SG
CYS
10
1_555
97.2
B
CYS
34
D
SG
CYS
7
1_555
B
ZN
322
H
ZN
ZN
1_555
B
CYS
44
D
SG
CYS
17
1_555
114.1
B
CYS
37
D
SG
CYS
10
1_555
B
ZN
322
H
ZN
ZN
1_555
B
CYS
44
D
SG
CYS
17
1_555
108.6
B
CYS
34
D
SG
CYS
7
1_555
B
ZN
322
H
ZN
ZN
1_555
B
CYS
51
D
SG
CYS
24
1_555
99.7
B
CYS
37
D
SG
CYS
10
1_555
B
ZN
322
H
ZN
ZN
1_555
B
CYS
51
D
SG
CYS
24
1_555
135.9
B
CYS
44
D
SG
CYS
17
1_555
B
ZN
322
H
ZN
ZN
1_555
B
CYS
51
D
SG
CYS
24
1_555
100.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
SER
63
C
O
SER
36
A
N
VAL
72
C
N
VAL
45
1
A
MET
28
C
MET
1
1
Y
1
A
LYS
29
C
LYS
2
1
Y
1
A
LYS
118
C
LYS
91
1
Y
1
A
TYR
119
C
TYR
92
1
Y
1
A
SER
120
C
SER
93
1
Y
1
A
SER
121
C
SER
94
1
Y
1
A
VAL
122
C
VAL
95
1
Y
1
A
SER
123
C
SER
96
1
Y
1
B
MET
28
D
MET
1
1
Y
1
B
LYS
29
D
LYS
2
1
Y
1
B
LYS
100
D
LYS
73
1
Y
1
B
ILE
101
D
ILE
74
1
Y
1
B
ARG
102
D
ARG
75
1
Y
1
B
GLY
103
D
GLY
76
1
Y
1
B
ASN
104
D
ASN
77
1
Y
1
B
ILE
105
D
ILE
78
1
Y
1
B
PRO
106
D
PRO
79
1
Y
1
B
ALA
107
D
ALA
80
1
Y
1
B
THR
108
D
THR
81
1
Y
1
B
SER
109
D
SER
82
1
Y
1
B
ASP
110
D
ASP
83
1
Y
1
B
ASP
111
D
ASP
84
1
Y
1
B
GLU
112
D
GLU
85
1
Y
1
B
PRO
113
D
PRO
86
1
Y
1
B
PHE
114
D
PHE
87
1
Y
1
B
ASP
115
D
ASP
88
1
Y
1
B
LEU
116
D
LEU
89
1
Y
1
B
LYS
117
D
LYS
90
1
Y
1
B
LYS
118
D
LYS
91
1
Y
1
B
TYR
119
D
TYR
92
1
Y
1
B
SER
120
D
SER
93
1
Y
1
B
SER
121
D
SER
94
1
Y
1
B
VAL
122
D
VAL
95
1
Y
1
B
SER
123
D
SER
96
1
Y
1
D
DG
3
0.056
SIDE CHAIN
1
D
DT
9
0.093
SIDE CHAIN
1
A
ASN
104
0.098
SIDE CHAIN
1
A
ASP
111
0.074
SIDE CHAIN
1
-5.04
0.80
102.40
97.36
D
D
D
C3'
C2'
C1'
DT
DT
DT
1
1
1
N
1
-5.56
0.70
108.00
102.44
D
D
D
O4'
C1'
N1
DT
DT
DT
1
1
1
N
1
-5.76
0.90
105.70
99.94
D
D
D
O5'
P
OP2
DG
DG
DG
3
3
3
N
1
4.89
0.70
119.90
124.79
D
D
D
N3
C2
N2
DG
DG
DG
3
3
3
N
1
4.96
0.30
108.30
113.26
D
D
D
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
8.40
1.20
115.70
124.10
D
D
D
C5'
C4'
C3'
DC
DC
DC
5
5
5
N
1
-6.08
0.80
105.90
99.82
D
D
D
O4'
C1'
C2'
DC
DC
DC
5
5
5
N
1
-10.99
1.60
120.90
109.91
D
D
D
P
O5'
C5'
DA
DA
DA
7
7
7
N
1
-6.59
0.70
108.00
101.41
D
D
D
O4'
C1'
N9
DA
DA
DA
7
7
7
N
1
-17.03
1.60
120.90
103.87
D
D
D
P
O5'
C5'
DT
DT
DT
8
8
8
N
1
-7.50
1.00
110.10
102.60
D
D
D
C1'
O4'
C4'
DT
DT
DT
8
8
8
N
1
-6.35
0.70
108.00
101.65
D
D
D
O4'
C1'
N1
DT
DT
DT
8
8
8
N
1
3.05
0.50
121.30
124.35
D
D
D
C6
N1
C2
DT
DT
DT
8
8
8
N
1
-5.22
0.40
104.50
99.28
D
D
D
O4'
C4'
C3'
DT
DT
DT
9
9
9
N
1
-5.47
0.80
105.90
100.43
D
D
D
O4'
C1'
C2'
DT
DT
DT
9
9
9
N
1
8.49
1.40
114.30
122.79
D
D
D
N1
C1'
C2'
DT
DT
DT
9
9
9
N
1
-4.48
0.50
121.30
116.82
D
D
D
C6
N1
C2
DT
DT
DT
9
9
9
N
1
9.38
0.60
119.90
129.28
D
D
D
N3
C4
O4
DT
DT
DT
9
9
9
N
1
-15.44
0.70
124.90
109.46
D
D
D
C5
C4
O4
DT
DT
DT
9
9
9
N
1
-17.23
0.60
119.00
101.77
D
D
D
C4
C5
C7
DT
DT
DT
9
9
9
N
1
16.69
0.60
122.90
139.59
D
D
D
C6
C5
C7
DT
DT
DT
9
9
9
N
1
-9.30
1.50
119.60
110.30
D
D
D
OP1
P
OP2
DG
DG
DG
10
10
10
N
1
8.86
1.10
109.80
118.66
D
D
D
C5'
C4'
O4'
DG
DG
DG
10
10
10
N
1
-4.04
0.60
126.00
121.96
D
D
D
N3
C4
N9
DG
DG
DG
10
10
10
N
1
-10.44
1.20
119.70
109.26
D
D
D
C3'
O3'
P
DG
DG
DC
10
10
11
Y
1
-2.46
0.40
104.50
102.04
D
D
D
O4'
C4'
C3'
DC
DC
DC
11
11
11
N
1
-6.37
0.80
102.40
96.03
D
D
D
C3'
C2'
C1'
DC
DC
DC
11
11
11
N
1
-9.70
1.20
119.70
110.00
D
D
D
C3'
O3'
P
DC
DC
DG
12
12
13
Y
1
6.54
0.30
108.30
114.84
D
D
D
O4'
C1'
N9
DG
DG
DG
13
13
13
N
1
-2.66
0.40
106.40
103.74
D
D
D
C8
N9
C4
DG
DG
DG
13
13
13
N
1
7.92
1.20
119.70
127.62
D
D
D
C3'
O3'
P
DG
DG
DA
13
13
14
Y
1
12.54
1.60
120.90
133.44
D
D
D
P
O5'
C5'
DA
DA
DA
14
14
14
N
1
-7.10
1.00
110.10
103.00
D
D
D
C1'
O4'
C4'
DA
DA
DA
14
14
14
N
1
9.34
0.30
108.30
117.64
D
D
D
O4'
C1'
N9
DA
DA
DA
14
14
14
N
1
-7.24
0.80
105.90
98.66
E
E
E
O4'
C1'
C2'
DT
DT
DT
15
15
15
N
1
-6.59
0.70
108.00
101.41
E
E
E
O4'
C1'
N1
DT
DT
DT
15
15
15
N
1
-5.31
0.70
102.20
96.89
E
E
E
C4'
C3'
C2'
DC
DC
DC
16
16
16
N
1
6.82
0.30
108.30
115.12
E
E
E
O4'
C1'
N1
DC
DC
DC
16
16
16
N
1
-11.78
1.60
120.90
109.12
E
E
E
P
O5'
C5'
DG
DG
DG
18
18
18
N
1
6.77
0.30
108.30
115.07
E
E
E
O4'
C1'
N9
DG
DG
DG
18
18
18
N
1
2.50
0.30
108.30
110.80
E
E
E
O4'
C1'
N1
DC
DC
DC
19
19
19
N
1
6.73
1.10
109.80
116.53
E
E
E
C5'
C4'
O4'
DA
DA
DA
20
20
20
N
1
-5.58
0.80
105.90
100.32
E
E
E
O4'
C1'
C2'
DA
DA
DA
21
21
21
N
1
-6.72
0.70
108.00
101.28
E
E
E
O4'
C1'
N9
DA
DA
DA
21
21
21
N
1
4.29
0.30
108.30
112.59
E
E
E
O4'
C1'
N1
DT
DT
DT
22
22
22
N
1
-4.10
0.60
123.70
119.60
E
E
E
C5
C6
N1
DT
DT
DT
22
22
22
N
1
-10.83
1.60
120.90
110.07
E
E
E
P
O5'
C5'
DT
DT
DT
23
23
23
N
1
-4.19
0.60
118.00
113.81
E
E
E
C4
C5
C6
DT
DT
DT
23
23
23
N
1
6.83
0.60
122.90
129.73
E
E
E
C6
C5
C7
DT
DT
DT
23
23
23
N
1
-7.22
0.80
109.40
102.18
E
E
E
O5'
C5'
C4'
DG
DG
DG
24
24
24
N
1
-7.04
0.80
109.40
102.36
E
E
E
O5'
C5'
C4'
DC
DC
DC
25
25
25
N
1
2.00
0.30
108.30
110.30
E
E
E
O4'
C1'
N1
DC
DC
DC
25
25
25
N
1
8.11
1.20
119.70
127.81
E
E
E
C3'
O3'
P
DC
DC
DC
25
25
26
Y
1
10.82
1.20
119.70
130.52
E
E
E
C3'
O3'
P
DC
DC
DG
26
26
27
Y
1
-2.49
0.40
104.50
102.01
E
E
E
O4'
C4'
C3'
DG
DG
DG
27
27
27
N
1
-11.44
1.90
109.30
97.86
E
E
E
C5'
C4'
O4'
DG
DG
DG
27
27
27
N
1
-6.36
1.00
110.10
103.74
E
E
E
C1'
O4'
C4'
DG
DG
DG
27
27
27
N
1
-6.72
0.70
102.20
95.48
E
E
E
C4'
C3'
C2'
DG
DG
DG
27
27
27
N
1
7.60
0.30
108.30
115.90
E
E
E
O4'
C1'
N9
DG
DG
DG
27
27
27
N
1
12.03
1.80
110.60
122.63
A
A
A
N
CA
CB
ARG
ARG
ARG
31
31
31
N
1
-16.50
1.80
114.00
97.50
A
A
A
CA
CB
SG
CYS
CYS
CYS
44
44
44
N
1
3.11
0.50
120.30
123.41
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
53
53
53
N
1
6.85
0.90
118.30
125.15
A
A
A
CB
CG
OD1
ASP
ASP
ASP
65
65
65
N
1
-7.24
0.90
118.30
111.06
A
A
A
CB
CG
OD2
ASP
ASP
ASP
65
65
65
N
1
-13.34
2.10
128.40
115.06
A
A
A
C
N
CD
ASP
PRO
PRO
65
66
66
Y
1
-6.15
0.90
118.30
112.15
A
A
A
CB
CG
OD2
ASP
ASP
ASP
82
82
82
N
1
-9.13
1.50
110.90
101.77
A
A
A
CA
CB
CG1
VAL
VAL
VAL
86
86
86
N
1
15.96
1.50
119.30
135.26
A
A
A
C
N
CA
ASP
PRO
PRO
97
98
98
Y
1
-29.40
2.10
128.40
99.00
A
A
A
C
N
CD
ASP
PRO
PRO
97
98
98
Y
1
-13.02
1.40
111.70
98.68
A
A
A
CA
N
CD
PRO
PRO
PRO
98
98
98
N
1
3.59
0.50
120.30
123.89
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
102
102
102
N
1
9.23
1.50
110.50
119.73
A
A
A
N
CA
CB
SER
SER
SER
109
109
109
N
1
-8.70
0.90
118.30
109.60
A
A
A
CB
CG
OD2
ASP
ASP
ASP
111
111
111
N
1
10.92
1.50
119.30
130.22
A
A
A
C
N
CA
GLU
PRO
PRO
112
113
113
Y
1
-31.03
2.10
128.40
97.37
A
A
A
C
N
CD
GLU
PRO
PRO
112
113
113
Y
1
-8.52
1.40
111.70
103.18
A
A
A
CA
N
CD
PRO
PRO
PRO
113
113
113
N
1
14.76
2.20
113.40
128.16
A
A
A
CA
CB
CG
ASP
ASP
ASP
115
115
115
N
1
22.32
2.70
111.00
133.32
A
A
A
N
CA
C
LEU
LEU
LEU
116
116
116
N
1
4.48
0.50
120.30
124.78
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
38
38
38
N
1
-21.54
2.20
120.60
99.06
B
B
B
C
N
CD
PHE
PRO
PRO
48
49
49
Y
1
11.23
1.50
110.50
121.73
B
B
B
N
CA
CB
SER
SER
SER
50
50
50
N
1
-12.18
2.00
110.40
98.22
B
B
B
N
CA
CB
LEU
LEU
LEU
57
57
57
N
1
-10.25
1.70
111.00
100.75
B
B
B
CB
CG
CD1
LEU
LEU
LEU
57
57
57
N
1
7.77
1.20
111.50
119.27
B
B
B
CB
CA
C
CYS
CYS
CYS
61
61
61
N
1
-6.77
0.90
118.30
111.53
B
B
B
CB
CG
OD1
ASP
ASP
ASP
65
65
65
N
1
5.57
0.90
118.30
123.87
B
B
B
CB
CG
OD2
ASP
ASP
ASP
65
65
65
N
1
-6.23
0.90
118.30
112.07
B
B
B
CB
CG
OD2
ASP
ASP
ASP
71
71
71
N
1
-10.59
1.40
111.70
101.11
B
B
B
CA
N
CD
PRO
PRO
PRO
73
73
73
N
1
9.81
1.50
110.50
120.31
B
B
B
N
CA
CB
SER
SER
SER
75
75
75
N
1
10.56
1.20
120.10
130.66
B
B
B
CZ
CE2
CD2
PHE
PHE
PHE
79
79
79
N
1
5.62
0.90
118.30
123.92
B
B
B
CB
CG
OD1
ASP
ASP
ASP
82
82
82
N
1
-5.85
0.90
118.30
112.45
B
B
B
CB
CG
OD2
ASP
ASP
ASP
82
82
82
N
1
-13.60
1.90
110.20
96.60
B
B
B
CB
CA
C
LEU
LEU
LEU
84
84
84
N
1
-10.33
1.70
113.30
102.97
B
B
B
CA
CB
CG
MET
MET
MET
88
88
88
N
1
-6.82
0.90
118.30
111.48
B
B
B
CB
CG
OD2
ASP
ASP
ASP
97
97
97
N
1
11.29
1.50
119.30
130.59
B
B
B
C
N
CA
ASP
PRO
PRO
97
98
98
Y
1
-24.12
2.10
128.40
104.28
B
B
B
C
N
CD
ASP
PRO
PRO
97
98
98
Y
1
D
D
O3'
C3'
DA
DA
7
7
-0.066
0.006
1.419
1.353
N
1
D
D
C1'
N1
DT
DT
8
8
-0.089
0.014
1.468
1.379
N
1
D
D
C1'
N1
DT
DT
9
9
0.120
0.013
1.488
1.608
N
1
D
D
C2
N3
DT
DT
9
9
0.061
0.008
1.373
1.434
N
1
D
D
N3
C4
DT
DT
9
9
0.052
0.008
1.382
1.434
N
1
D
D
C4
C5
DT
DT
9
9
-0.078
0.009
1.445
1.367
N
1
D
D
C6
N1
DT
DT
9
9
0.046
0.007
1.378
1.424
N
1
D
D
O3'
C3'
DG
DG
13
13
0.099
0.013
1.435
1.534
N
1
E
E
N9
C4
DA
DA
20
20
0.036
0.006
1.374
1.410
N
1
E
E
O3'
C3'
DA
DA
21
21
-0.049
0.006
1.419
1.370
N
1
E
E
C5
C7
DT
DT
23
23
0.052
0.006
1.496
1.548
N
1
A
A
CD
OE2
GLU
GLU
58
58
0.066
0.011
1.252
1.318
N
1
B
B
CD
OE1
GLU
GLU
58
58
0.070
0.011
1.252
1.322
N
1
B
B
CD
N
PRO
PRO
73
73
0.132
0.014
1.474
1.606
N
1
B
B
CD
OE2
GLU
GLU
81
81
0.066
0.011
1.252
1.318
N
1
A
LYS
35
-37.22
-32.03
1
A
ARG
36
-67.34
-77.56
1
A
CYS
44
-34.03
116.57
1
A
GLN
46
-19.76
44.16
1
A
ALA
55
-49.24
-71.89
1
A
GLU
58
87.19
-10.11
1
A
PRO
66
-45.33
-71.46
1
A
ALA
67
-51.14
-83.25
1
A
TYR
94
-58.69
4.18
1
A
ASP
97
-149.07
-104.55
1
A
ILE
101
-117.74
-110.07
1
A
ARG
102
175.72
-67.95
1
A
ILE
105
-91.44
-61.91
1
A
ALA
107
-62.93
6.48
1
A
PHE
114
-26.77
136.84
1
A
ASP
115
72.69
-76.73
1
B
THR
32
-164.37
112.38
1
B
LYS
35
-52.64
-80.04
1
B
ASP
45
-58.99
8.13
1
B
SER
50
-169.47
111.25
1
B
GLU
93
-51.84
-7.44
1
B
VAL
96
-81.44
-144.77
1
B
ASP
97
-168.97
-139.82
0.3300000
0.2450000
3.200
10.000
35480
1
0.000
3.200
10.000
1
1826
4
568
1253
1PYI
7096
4.000
0.0640000
1
4.600
data reduction
XDS
CRYSTAL STRUCTURE OF A PPR1-DNA COMPLEX: DNA RECOGNITION BY PROTEINS CONTAINING A ZN2CYS6 BINUCLEAR CLUSTER
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
A
LYS
35
C
LYS
8
HELX_P
A
LYS
40
C
LYS
13
1
1
6
A
LYS
52
C
LYS
25
HELX_P
A
LYS
56
C
LYS
29
1
2
5
A
ARG
74
C
ARG
47
HELX_P
A
GLU
93
C
GLU
66
1
3
20
B
LYS
35
D
LYS
8
HELX_P
B
LYS
40
D
LYS
13
1
4
6
B
LYS
52
D
LYS
25
HELX_P
B
LEU
57
D
LEU
30
1
5
6
B
TYR
76
D
TYR
49
HELX_P
B
TYR
94
D
TYR
67
1
6
19
metalc
2.287
A
ZN
21
E
ZN
ZN
1_555
A
CYS
34
C
SG
CYS
7
1_555
metalc
2.430
A
ZN
21
E
ZN
ZN
1_555
A
CYS
51
C
SG
CYS
24
1_555
metalc
2.270
A
ZN
21
E
ZN
ZN
1_555
A
CYS
54
C
SG
CYS
27
1_555
metalc
2.216
A
ZN
21
E
ZN
ZN
1_555
A
CYS
61
C
SG
CYS
34
1_555
metalc
2.482
A
ZN
22
F
ZN
ZN
1_555
A
CYS
34
C
SG
CYS
7
1_555
metalc
2.210
A
ZN
22
F
ZN
ZN
1_555
A
CYS
37
C
SG
CYS
10
1_555
metalc
2.158
A
ZN
22
F
ZN
ZN
1_555
A
CYS
44
C
SG
CYS
17
1_555
metalc
2.292
A
ZN
22
F
ZN
ZN
1_555
A
CYS
51
C
SG
CYS
24
1_555
metalc
2.369
B
CYS
34
D
SG
CYS
7
1_555
B
ZN
321
G
ZN
ZN
1_555
metalc
2.309
B
CYS
34
D
SG
CYS
7
1_555
B
ZN
322
H
ZN
ZN
1_555
metalc
2.299
B
CYS
37
D
SG
CYS
10
1_555
B
ZN
322
H
ZN
ZN
1_555
metalc
2.281
B
CYS
44
D
SG
CYS
17
1_555
B
ZN
322
H
ZN
ZN
1_555
metalc
2.330
B
CYS
51
D
SG
CYS
24
1_555
B
ZN
321
G
ZN
ZN
1_555
metalc
2.349
B
CYS
51
D
SG
CYS
24
1_555
B
ZN
322
H
ZN
ZN
1_555
metalc
2.249
B
CYS
54
D
SG
CYS
27
1_555
B
ZN
321
G
ZN
ZN
1_555
metalc
2.275
B
CYS
61
D
SG
CYS
34
1_555
B
ZN
321
G
ZN
ZN
1_555
hydrog
WATSON-CRICK
D
DT
1
A
N3
DT
1
1_555
E
DA
28
B
N1
DA
14
1_555
hydrog
WATSON-CRICK
D
DT
1
A
O4
DT
1
1_555
E
DA
28
B
N6
DA
14
1_555
hydrog
WATSON-CRICK
D
DC
2
A
N3
DC
2
1_555
E
DG
27
B
N1
DG
13
1_555
hydrog
WATSON-CRICK
D
DC
2
A
N4
DC
2
1_555
E
DG
27
B
O6
DG
13
1_555
hydrog
WATSON-CRICK
D
DC
2
A
O2
DC
2
1_555
E
DG
27
B
N2
DG
13
1_555
hydrog
WATSON-CRICK
D
DG
3
A
N1
DG
3
1_555
E
DC
26
B
N3
DC
12
1_555
hydrog
WATSON-CRICK
D
DG
3
A
N2
DG
3
1_555
E
DC
26
B
O2
DC
12
1_555
hydrog
WATSON-CRICK
D
DG
3
A
O6
DG
3
1_555
E
DC
26
B
N4
DC
12
1_555
hydrog
WATSON-CRICK
D
DG
4
A
N1
DG
4
1_555
E
DC
25
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
D
DG
4
A
N2
DG
4
1_555
E
DC
25
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
D
DG
4
A
O6
DG
4
1_555
E
DC
25
B
N4
DC
11
1_555
hydrog
DA-DT PAIR
D
DA
6
A
N1
DA
6
1_555
E
DT
23
B
N3
DT
9
1_555
hydrog
WATSON-CRICK
D
DA
7
A
N1
DA
7
1_555
E
DT
22
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
D
DA
7
A
N6
DA
7
1_555
E
DT
22
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
D
DT
8
A
N3
DT
8
1_555
E
DA
21
B
N1
DA
7
1_555
hydrog
WATSON-CRICK
D
DT
8
A
O4
DT
8
1_555
E
DA
21
B
N6
DA
7
1_555
hydrog
WATSON-CRICK
D
DG
10
A
N1
DG
10
1_555
E
DC
19
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
D
DG
10
A
N2
DG
10
1_555
E
DC
19
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
D
DG
10
A
O6
DG
10
1_555
E
DC
19
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
D
DC
11
A
N3
DC
11
1_555
E
DG
18
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
D
DC
11
A
N4
DC
11
1_555
E
DG
18
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
D
DC
11
A
O2
DC
11
1_555
E
DG
18
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
D
DC
12
A
N3
DC
12
1_555
E
DG
17
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
D
DC
12
A
N4
DC
12
1_555
E
DG
17
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
D
DC
12
A
O2
DC
12
1_555
E
DG
17
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
D
DG
13
A
N1
DG
13
1_555
E
DC
16
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
D
DG
13
A
N2
DG
13
1_555
E
DC
16
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
D
DG
13
A
O6
DG
13
1_555
E
DC
16
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
D
DA
14
A
N1
DA
14
1_555
E
DT
15
B
N3
DT
1
1_555
hydrog
WATSON-CRICK
D
DA
14
A
N6
DA
14
1_555
E
DT
15
B
O4
DT
1
1_555
TRANSCRIPTION/DNA
PROTEIN-DNA COMPLEX, TRANSCRIPTION-DNA COMPLEX, GAL4, ZINC FINGER, ZN2CYS6, BINUCLEAR CLUSTER, TRANSCRIPTION FACTOR
A
PHE
48
C
PHE
21
1
A
PRO
49
C
PRO
22
4.95
B
PHE
48
D
PHE
21
1
B
PRO
49
D
PRO
22
5.81
PPR1_YEAST
UNP
2
1PYI
PDB
1
29
123
1PYI
29
123
P07272
A
1
2
96
29
123
1PYI
29
123
P07272
B
1
2
96
1
14
1PYI
1
14
1PYI
D
2
1
14
15
28
1PYI
15
28
1PYI
E
2
1
14
2
anti-parallel
A
VAL
62
C
VAL
35
A
LEU
64
C
LEU
37
A
ASP
71
C
ASP
44
A
PRO
73
C
PRO
46
BINDING SITE FOR RESIDUE ZN A 21
A
ZN
21
Software
5
BINDING SITE FOR RESIDUE ZN A 22
A
ZN
22
Software
5
BINDING SITE FOR RESIDUE ZN B 321
B
ZN
321
Software
5
BINDING SITE FOR RESIDUE ZN B 322
B
ZN
322
Software
5
A
ZN
22
F
ZN
5
1_555
A
CYS
34
C
CYS
7
5
1_555
A
CYS
51
C
CYS
24
5
1_555
A
CYS
54
C
CYS
27
5
1_555
A
CYS
61
C
CYS
34
5
1_555
A
ZN
21
E
ZN
5
1_555
A
CYS
34
C
CYS
7
5
1_555
A
CYS
37
C
CYS
10
5
1_555
A
CYS
44
C
CYS
17
5
1_555
A
CYS
51
C
CYS
24
5
1_555
B
CYS
34
D
CYS
7
5
1_555
B
CYS
51
D
CYS
24
5
1_555
B
CYS
54
D
CYS
27
5
1_555
B
CYS
61
D
CYS
34
5
1_555
B
ZN
322
H
ZN
5
1_555
B
CYS
34
D
CYS
7
5
1_555
B
CYS
37
D
CYS
10
5
1_555
B
CYS
44
D
CYS
17
5
1_555
B
CYS
51
D
CYS
24
5
1_555
B
ZN
321
G
ZN
5
1_555
23
I 2 2 2