0.015259
0.008810
0.000000
0.000000
0.017619
0.000000
0.000000
0.000000
0.042501
0.00000
0.00000
0.00000
Di Costanzo, L.
Geremia, S.
Randaccio, L.
Nastri, F.
Maglio, O.
Lombardi, A.
Pavone, V.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
120.00
65.536
65.536
23.529
C2 H4 O
44.053
ACETYL GROUP
non-polymer
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C30 H28 Co N4 O4 5
567.501
CO(III)-(DEUTEROPORPHYRIN IX)
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
GW
J.Biol.Inorg.Chem.
JJBCFA
2154
0949-8257
9
1017
1027
10.1007/s00775-004-0600-x
15551102
Miniaturized heme proteins: crystal structure of Co(III)-mimochrome IV.
2004
To be Published
0353
"Design of a new mimochrome with unique topology"
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
MIRRORS
IMAGE PLATE
2001-04-21
MARRESEARCH
SI 111
SINGLE WAVELENGTH
M
x-ray
1
1.000
1.0
1.604
1.0
1.606
1.0
1.612
1.0
5.2R
ELETTRA
1.000, 1.604, 1.606, 1.612
SYNCHROTRON
ELETTRA BEAMLINE 5.2R
1125.240
MIMOCHROME IV, MINIATURIZED METALLOPROTEIN
2
syn
polymer
35.453
CHLORIDE ION
1
syn
non-polymer
567.501
CO(III)-(DEUTEROPORPHYRIN IX)
1
syn
non-polymer
18.015
water
67
nat
water
no
yes
(ACE)ESQLHSNKR(NH2)
XESQLHSNKRX
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
1
2.70
55.0
FOUR DATA SET WHERE COLLECTED WITH VAWELENGHT 1.000(A) 1.606(A),1.612(A)
EVAPORATION
water and 2-propanol, EVAPORATION
software
pdbx_unobs_or_zero_occ_atoms
struct_conn
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Refinement description
Advisory
Data collection
Derived calculations
1
0
2004-12-14
1
1
2008-04-29
1
2
2011-07-13
1
3
2017-10-11
1
4
2018-06-27
_software.name
RCSB
Y
RCSB
2003-07-09
REL
REL
CL
CHLORIDE ION
DEU
CO(III)-(DEUTEROPORPHYRIN IX)
HOH
water
Chemically synthesized
sample
CL
68
2
CL
CL
68
A
DEU
19
3
DEU
DEU
101
A
HOH
1
4
HOH
HOH
102
A
HOH
2
4
HOH
HOH
103
A
HOH
3
4
HOH
HOH
104
A
HOH
4
4
HOH
HOH
105
A
HOH
5
4
HOH
HOH
106
A
HOH
6
4
HOH
HOH
107
A
HOH
10
4
HOH
HOH
108
A
HOH
12
4
HOH
HOH
109
A
HOH
14
4
HOH
HOH
110
A
HOH
16
4
HOH
HOH
111
A
HOH
19
4
HOH
HOH
112
A
HOH
20
4
HOH
HOH
113
A
HOH
21
4
HOH
HOH
114
A
HOH
22
4
HOH
HOH
115
A
HOH
23
4
HOH
HOH
116
A
HOH
24
4
HOH
HOH
117
A
HOH
25
4
HOH
HOH
118
A
HOH
27
4
HOH
HOH
119
A
HOH
28
4
HOH
HOH
120
A
HOH
29
4
HOH
HOH
121
A
HOH
30
4
HOH
HOH
122
A
HOH
37
4
HOH
HOH
123
A
HOH
40
4
HOH
HOH
124
A
HOH
43
4
HOH
HOH
125
A
HOH
46
4
HOH
HOH
126
A
HOH
47
4
HOH
HOH
127
A
HOH
48
4
HOH
HOH
128
A
HOH
51
4
HOH
HOH
129
A
HOH
52
4
HOH
HOH
130
A
HOH
55
4
HOH
HOH
131
A
HOH
56
4
HOH
HOH
132
A
HOH
61
4
HOH
HOH
133
A
HOH
62
4
HOH
HOH
134
A
HOH
65
4
HOH
HOH
135
A
HOH
66
4
HOH
HOH
136
A
HOH
7
4
HOH
HOH
11
B
HOH
8
4
HOH
HOH
12
B
HOH
9
4
HOH
HOH
13
B
HOH
11
4
HOH
HOH
14
B
HOH
13
4
HOH
HOH
15
B
HOH
15
4
HOH
HOH
16
B
HOH
17
4
HOH
HOH
17
B
HOH
18
4
HOH
HOH
18
B
HOH
26
4
HOH
HOH
19
B
HOH
31
4
HOH
HOH
20
B
HOH
32
4
HOH
HOH
21
B
HOH
33
4
HOH
HOH
22
B
HOH
34
4
HOH
HOH
23
B
HOH
35
4
HOH
HOH
24
B
HOH
36
4
HOH
HOH
25
B
HOH
38
4
HOH
HOH
26
B
HOH
39
4
HOH
HOH
27
B
HOH
41
4
HOH
HOH
28
B
HOH
42
4
HOH
HOH
29
B
HOH
44
4
HOH
HOH
30
B
HOH
45
4
HOH
HOH
31
B
HOH
49
4
HOH
HOH
32
B
HOH
50
4
HOH
HOH
33
B
HOH
53
4
HOH
HOH
34
B
HOH
54
4
HOH
HOH
35
B
HOH
57
4
HOH
HOH
36
B
HOH
58
4
HOH
HOH
37
B
HOH
59
4
HOH
HOH
38
B
HOH
60
4
HOH
HOH
39
B
HOH
63
4
HOH
HOH
40
B
HOH
64
4
HOH
HOH
41
B
HOH
67
4
HOH
HOH
42
B
ACE
0
n
1
ACE
0
A
GLU
1
n
2
GLU
1
A
SER
2
n
3
SER
2
A
GLN
3
n
4
GLN
3
A
LEU
4
n
5
LEU
4
A
HIS
5
n
6
HIS
5
A
SER
6
n
7
SER
6
A
ASN
7
n
8
ASN
7
A
LYS
8
n
9
LYS
8
A
ARG
9
n
10
ARG
9
A
NH2
10
n
11
NH2
10
A
ACE
0
n
1
ACE
0
B
GLU
1
n
2
GLU
1
B
SER
2
n
3
SER
2
B
GLN
3
n
4
GLN
3
B
LEU
4
n
5
LEU
4
B
HIS
5
n
6
HIS
5
B
SER
6
n
7
SER
6
B
ASN
7
n
8
ASN
7
B
LYS
8
n
9
LYS
8
B
ARG
9
n
10
ARG
9
B
NH2
10
n
11
NH2
10
B
0.17
0.185
0.179
0.188
314
396
5.000
5.0
6269
author_defined_assembly
2
dimeric
software_defined_assembly
PISA
4
tetrameric
3460
-46
3500
A
HIS
5
A
NE2
HIS
6
1_555
A
DEU
101
D
CO
DEU
1_555
A
DEU
101
D
NA
DEU
1_555
91.3
A
HIS
5
A
NE2
HIS
6
1_555
A
DEU
101
D
CO
DEU
1_555
A
DEU
101
D
NB
DEU
1_555
89.1
A
DEU
101
D
NA
DEU
1_555
A
DEU
101
D
CO
DEU
1_555
A
DEU
101
D
NB
DEU
1_555
89.2
A
HIS
5
A
NE2
HIS
6
1_555
A
DEU
101
D
CO
DEU
1_555
A
DEU
101
D
NC
DEU
1_555
89.4
A
DEU
101
D
NA
DEU
1_555
A
DEU
101
D
CO
DEU
1_555
A
DEU
101
D
NC
DEU
1_555
179.3
A
DEU
101
D
NB
DEU
1_555
A
DEU
101
D
CO
DEU
1_555
A
DEU
101
D
NC
DEU
1_555
90.6
A
HIS
5
A
NE2
HIS
6
1_555
A
DEU
101
D
CO
DEU
1_555
A
DEU
101
D
ND
DEU
1_555
89.7
A
DEU
101
D
NA
DEU
1_555
A
DEU
101
D
CO
DEU
1_555
A
DEU
101
D
ND
DEU
1_555
89.8
A
DEU
101
D
NB
DEU
1_555
A
DEU
101
D
CO
DEU
1_555
A
DEU
101
D
ND
DEU
1_555
178.5
A
DEU
101
D
NC
DEU
1_555
A
DEU
101
D
CO
DEU
1_555
A
DEU
101
D
ND
DEU
1_555
90.4
A
HIS
5
A
NE2
HIS
6
1_555
A
DEU
101
D
CO
DEU
1_555
B
HIS
5
B
NE2
HIS
6
1_555
177.1
A
DEU
101
D
NA
DEU
1_555
A
DEU
101
D
CO
DEU
1_555
B
HIS
5
B
NE2
HIS
6
1_555
89.9
A
DEU
101
D
NB
DEU
1_555
A
DEU
101
D
CO
DEU
1_555
B
HIS
5
B
NE2
HIS
6
1_555
93.6
A
DEU
101
D
NC
DEU
1_555
A
DEU
101
D
CO
DEU
1_555
B
HIS
5
B
NE2
HIS
6
1_555
89.4
A
DEU
101
D
ND
DEU
1_555
A
DEU
101
D
CO
DEU
1_555
B
HIS
5
B
NE2
HIS
6
1_555
87.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.5000000000
0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
12_544
x,x-y-1,-z-1/3
crystal symmetry operation
32.7680000000
-56.7558408624
-7.8430000000
1
A
CL
68
C
CL
1
B
HOH
18
F
HOH
1
B
HOH
31
F
HOH
1
A
O1D
DEU
101
D
O1D
DEU
1
1
N
1
A
O2A
DEU
101
D
O2A
DEU
1
1
N
1
A
A
NZ
CGD
LYS
DEU
8
101
1.34
1
B
A
NZ
CGA
LYS
DEU
8
101
1.38
ANISOTROPIC REFINEMENT FOR COBALT AND CHLORIDE IONS. NO GEOMETRIC OR ADP RESTRAINTS APPLIED TO COBALT ATOM.
0.179
0.173
1.25
16.4
314
7651
7651
5.0
RANDOM
1
FREE R
4
2
MAD on the cobalt edge
1.25
16.4
67
265
38
0
160
0.010
2.60
1.250
16.4
1PYZ
8061
0.093
1
15.0
15.0
94.4
0.636
1.25
1.32
3.1
1
9.4
86.4
data reduction
MOSFLM
data scaling
SCALA
phasing
MLPHARE
model building
RSPS
FROM CCP4.SHELXL FOR THE REFINEMEN
refinement
SHELX
VERSION 97-1
refinement
SHELXL-97
MIMOCHROME IV, MINIATURIZED METALLOPROTEIN
CRYSTALLOGRAPHIC STRUCTURE OF MIMOCHROME IV
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
SER
2
A
SER
3
HELX_P
A
ARG
9
A
ARG
10
1
1
8
B
SER
2
B
SER
3
HELX_P
B
ARG
9
B
ARG
10
1
2
8
covale
1.323
A
ACE
0
A
C
ACE
1
1_555
A
GLU
1
A
N
GLU
2
1_555
covale
1.316
A
ARG
9
A
C
ARG
10
1_555
A
NH2
10
A
N
NH2
11
1_555
covale
1.309
B
ACE
0
B
C
ACE
1
1_555
B
GLU
1
B
N
GLU
2
1_555
covale
1.332
B
ARG
9
B
C
ARG
10
1_555
B
NH2
10
B
N
NH2
11
1_555
metalc
1.982
A
HIS
5
A
NE2
HIS
6
1_555
A
DEU
101
D
CO
DEU
1_555
metalc
1.925
B
HIS
5
B
NE2
HIS
6
1_555
A
DEU
101
D
CO
DEU
1_555
METAL BINDING PROTEIN
MINIATURIZED METALLOPROTEIN, MAD ON THE COBALT EDGE, METAL BINDING PROTEIN
1PYZ
PDB
1
1PYZ
0
10
1PYZ
0
10
1PYZ
A
1
1
11
0
10
1PYZ
0
10
1PYZ
B
1
1
11
BINDING SITE FOR RESIDUE CL A 68
Software
4
BINDING SITE FOR RESIDUE DEU A 101
Software
10
A
LYS
8
A
LYS
9
4
12_544
A
LYS
8
A
LYS
9
4
1_555
B
LYS
8
B
LYS
9
4
12_544
B
LYS
8
B
LYS
9
4
1_555
A
ACE
0
A
ACE
1
10
11_555
A
HIS
5
A
HIS
6
10
1_555
A
LYS
8
A
LYS
9
10
1_555
A
ARG
9
A
ARG
10
10
1_555
A
HOH
103
E
HOH
10
1_555
A
HOH
104
E
HOH
10
1_555
B
GLU
1
B
GLU
2
10
8_435
B
HIS
5
B
HIS
6
10
1_555
B
LYS
8
B
LYS
9
10
1_555
B
ARG
9
B
ARG
10
10
8_435
181
P 64 2 2