0.015259 0.008810 0.000000 0.000000 0.017619 0.000000 0.000000 0.000000 0.042501 0.00000 0.00000 0.00000 Di Costanzo, L. Geremia, S. Randaccio, L. Nastri, F. Maglio, O. Lombardi, A. Pavone, V. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 24 90.00 90.00 120.00 65.536 65.536 23.529 C2 H4 O 44.053 ACETYL GROUP non-polymer C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C30 H28 Co N4 O4 5 567.501 CO(III)-(DEUTEROPORPHYRIN IX) non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking H2 N 16.023 AMINO GROUP non-polymer C3 H7 N O3 105.093 y SERINE L-peptide linking GW J.Biol.Inorg.Chem. JJBCFA 2154 0949-8257 9 1017 1027 10.1007/s00775-004-0600-x 15551102 Miniaturized heme proteins: crystal structure of Co(III)-mimochrome IV. 2004 To be Published 0353 "Design of a new mimochrome with unique topology" 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 MIRRORS IMAGE PLATE 2001-04-21 MARRESEARCH SI 111 SINGLE WAVELENGTH M x-ray 1 1.000 1.0 1.604 1.0 1.606 1.0 1.612 1.0 5.2R ELETTRA 1.000, 1.604, 1.606, 1.612 SYNCHROTRON ELETTRA BEAMLINE 5.2R 1125.240 MIMOCHROME IV, MINIATURIZED METALLOPROTEIN 2 syn polymer 35.453 CHLORIDE ION 1 syn non-polymer 567.501 CO(III)-(DEUTEROPORPHYRIN IX) 1 syn non-polymer 18.015 water 67 nat water no yes (ACE)ESQLHSNKR(NH2) XESQLHSNKRX A,B polypeptide(L) n n n n n n n n n n n 1 2.70 55.0 FOUR DATA SET WHERE COLLECTED WITH VAWELENGHT 1.000(A) 1.606(A),1.612(A) EVAPORATION water and 2-propanol, EVAPORATION software pdbx_unobs_or_zero_occ_atoms struct_conn repository Initial release Version format compliance Derived calculations Version format compliance Refinement description Advisory Data collection Derived calculations 1 0 2004-12-14 1 1 2008-04-29 1 2 2011-07-13 1 3 2017-10-11 1 4 2018-06-27 _software.name RCSB Y RCSB 2003-07-09 REL REL CL CHLORIDE ION DEU CO(III)-(DEUTEROPORPHYRIN IX) HOH water Chemically synthesized sample CL 68 2 CL CL 68 A DEU 19 3 DEU DEU 101 A HOH 1 4 HOH HOH 102 A HOH 2 4 HOH HOH 103 A HOH 3 4 HOH HOH 104 A HOH 4 4 HOH HOH 105 A HOH 5 4 HOH HOH 106 A HOH 6 4 HOH HOH 107 A HOH 10 4 HOH HOH 108 A HOH 12 4 HOH HOH 109 A HOH 14 4 HOH HOH 110 A HOH 16 4 HOH HOH 111 A HOH 19 4 HOH HOH 112 A HOH 20 4 HOH HOH 113 A HOH 21 4 HOH HOH 114 A HOH 22 4 HOH HOH 115 A HOH 23 4 HOH HOH 116 A HOH 24 4 HOH HOH 117 A HOH 25 4 HOH HOH 118 A HOH 27 4 HOH HOH 119 A HOH 28 4 HOH HOH 120 A HOH 29 4 HOH HOH 121 A HOH 30 4 HOH HOH 122 A HOH 37 4 HOH HOH 123 A HOH 40 4 HOH HOH 124 A HOH 43 4 HOH HOH 125 A HOH 46 4 HOH HOH 126 A HOH 47 4 HOH HOH 127 A HOH 48 4 HOH HOH 128 A HOH 51 4 HOH HOH 129 A HOH 52 4 HOH HOH 130 A HOH 55 4 HOH HOH 131 A HOH 56 4 HOH HOH 132 A HOH 61 4 HOH HOH 133 A HOH 62 4 HOH HOH 134 A HOH 65 4 HOH HOH 135 A HOH 66 4 HOH HOH 136 A HOH 7 4 HOH HOH 11 B HOH 8 4 HOH HOH 12 B HOH 9 4 HOH HOH 13 B HOH 11 4 HOH HOH 14 B HOH 13 4 HOH HOH 15 B HOH 15 4 HOH HOH 16 B HOH 17 4 HOH HOH 17 B HOH 18 4 HOH HOH 18 B HOH 26 4 HOH HOH 19 B HOH 31 4 HOH HOH 20 B HOH 32 4 HOH HOH 21 B HOH 33 4 HOH HOH 22 B HOH 34 4 HOH HOH 23 B HOH 35 4 HOH HOH 24 B HOH 36 4 HOH HOH 25 B HOH 38 4 HOH HOH 26 B HOH 39 4 HOH HOH 27 B HOH 41 4 HOH HOH 28 B HOH 42 4 HOH HOH 29 B HOH 44 4 HOH HOH 30 B HOH 45 4 HOH HOH 31 B HOH 49 4 HOH HOH 32 B HOH 50 4 HOH HOH 33 B HOH 53 4 HOH HOH 34 B HOH 54 4 HOH HOH 35 B HOH 57 4 HOH HOH 36 B HOH 58 4 HOH HOH 37 B HOH 59 4 HOH HOH 38 B HOH 60 4 HOH HOH 39 B HOH 63 4 HOH HOH 40 B HOH 64 4 HOH HOH 41 B HOH 67 4 HOH HOH 42 B ACE 0 n 1 ACE 0 A GLU 1 n 2 GLU 1 A SER 2 n 3 SER 2 A GLN 3 n 4 GLN 3 A LEU 4 n 5 LEU 4 A HIS 5 n 6 HIS 5 A SER 6 n 7 SER 6 A ASN 7 n 8 ASN 7 A LYS 8 n 9 LYS 8 A ARG 9 n 10 ARG 9 A NH2 10 n 11 NH2 10 A ACE 0 n 1 ACE 0 B GLU 1 n 2 GLU 1 B SER 2 n 3 SER 2 B GLN 3 n 4 GLN 3 B LEU 4 n 5 LEU 4 B HIS 5 n 6 HIS 5 B SER 6 n 7 SER 6 B ASN 7 n 8 ASN 7 B LYS 8 n 9 LYS 8 B ARG 9 n 10 ARG 9 B NH2 10 n 11 NH2 10 B 0.17 0.185 0.179 0.188 314 396 5.000 5.0 6269 author_defined_assembly 2 dimeric software_defined_assembly PISA 4 tetrameric 3460 -46 3500 A HIS 5 A NE2 HIS 6 1_555 A DEU 101 D CO DEU 1_555 A DEU 101 D NA DEU 1_555 91.3 A HIS 5 A NE2 HIS 6 1_555 A DEU 101 D CO DEU 1_555 A DEU 101 D NB DEU 1_555 89.1 A DEU 101 D NA DEU 1_555 A DEU 101 D CO DEU 1_555 A DEU 101 D NB DEU 1_555 89.2 A HIS 5 A NE2 HIS 6 1_555 A DEU 101 D CO DEU 1_555 A DEU 101 D NC DEU 1_555 89.4 A DEU 101 D NA DEU 1_555 A DEU 101 D CO DEU 1_555 A DEU 101 D NC DEU 1_555 179.3 A DEU 101 D NB DEU 1_555 A DEU 101 D CO DEU 1_555 A DEU 101 D NC DEU 1_555 90.6 A HIS 5 A NE2 HIS 6 1_555 A DEU 101 D CO DEU 1_555 A DEU 101 D ND DEU 1_555 89.7 A DEU 101 D NA DEU 1_555 A DEU 101 D CO DEU 1_555 A DEU 101 D ND DEU 1_555 89.8 A DEU 101 D NB DEU 1_555 A DEU 101 D CO DEU 1_555 A DEU 101 D ND DEU 1_555 178.5 A DEU 101 D NC DEU 1_555 A DEU 101 D CO DEU 1_555 A DEU 101 D ND DEU 1_555 90.4 A HIS 5 A NE2 HIS 6 1_555 A DEU 101 D CO DEU 1_555 B HIS 5 B NE2 HIS 6 1_555 177.1 A DEU 101 D NA DEU 1_555 A DEU 101 D CO DEU 1_555 B HIS 5 B NE2 HIS 6 1_555 89.9 A DEU 101 D NB DEU 1_555 A DEU 101 D CO DEU 1_555 B HIS 5 B NE2 HIS 6 1_555 93.6 A DEU 101 D NC DEU 1_555 A DEU 101 D CO DEU 1_555 B HIS 5 B NE2 HIS 6 1_555 89.4 A DEU 101 D ND DEU 1_555 A DEU 101 D CO DEU 1_555 B HIS 5 B NE2 HIS 6 1_555 87.6 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.5000000000 0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 12_544 x,x-y-1,-z-1/3 crystal symmetry operation 32.7680000000 -56.7558408624 -7.8430000000 1 A CL 68 C CL 1 B HOH 18 F HOH 1 B HOH 31 F HOH 1 A O1D DEU 101 D O1D DEU 1 1 N 1 A O2A DEU 101 D O2A DEU 1 1 N 1 A A NZ CGD LYS DEU 8 101 1.34 1 B A NZ CGA LYS DEU 8 101 1.38 ANISOTROPIC REFINEMENT FOR COBALT AND CHLORIDE IONS. NO GEOMETRIC OR ADP RESTRAINTS APPLIED TO COBALT ATOM. 0.179 0.173 1.25 16.4 314 7651 7651 5.0 RANDOM 1 FREE R 4 2 MAD on the cobalt edge 1.25 16.4 67 265 38 0 160 0.010 2.60 1.250 16.4 1PYZ 8061 0.093 1 15.0 15.0 94.4 0.636 1.25 1.32 3.1 1 9.4 86.4 data reduction MOSFLM data scaling SCALA phasing MLPHARE model building RSPS FROM CCP4.SHELXL FOR THE REFINEMEN refinement SHELX VERSION 97-1 refinement SHELXL-97 MIMOCHROME IV, MINIATURIZED METALLOPROTEIN CRYSTALLOGRAPHIC STRUCTURE OF MIMOCHROME IV 1 N N 1 N N 2 N N 3 N N 4 N N 4 N N A SER 2 A SER 3 HELX_P A ARG 9 A ARG 10 1 1 8 B SER 2 B SER 3 HELX_P B ARG 9 B ARG 10 1 2 8 covale 1.323 A ACE 0 A C ACE 1 1_555 A GLU 1 A N GLU 2 1_555 covale 1.316 A ARG 9 A C ARG 10 1_555 A NH2 10 A N NH2 11 1_555 covale 1.309 B ACE 0 B C ACE 1 1_555 B GLU 1 B N GLU 2 1_555 covale 1.332 B ARG 9 B C ARG 10 1_555 B NH2 10 B N NH2 11 1_555 metalc 1.982 A HIS 5 A NE2 HIS 6 1_555 A DEU 101 D CO DEU 1_555 metalc 1.925 B HIS 5 B NE2 HIS 6 1_555 A DEU 101 D CO DEU 1_555 METAL BINDING PROTEIN MINIATURIZED METALLOPROTEIN, MAD ON THE COBALT EDGE, METAL BINDING PROTEIN 1PYZ PDB 1 1PYZ 0 10 1PYZ 0 10 1PYZ A 1 1 11 0 10 1PYZ 0 10 1PYZ B 1 1 11 BINDING SITE FOR RESIDUE CL A 68 Software 4 BINDING SITE FOR RESIDUE DEU A 101 Software 10 A LYS 8 A LYS 9 4 12_544 A LYS 8 A LYS 9 4 1_555 B LYS 8 B LYS 9 4 12_544 B LYS 8 B LYS 9 4 1_555 A ACE 0 A ACE 1 10 11_555 A HIS 5 A HIS 6 10 1_555 A LYS 8 A LYS 9 10 1_555 A ARG 9 A ARG 10 10 1_555 A HOH 103 E HOH 10 1_555 A HOH 104 E HOH 10 1_555 B GLU 1 B GLU 2 10 8_435 B HIS 5 B HIS 6 10 1_555 B LYS 8 B LYS 9 10 1_555 B ARG 9 B ARG 10 10 8_435 181 P 64 2 2