0.014428
0.000000
0.000000
0.000000
0.014428
0.000000
0.000000
0.000000
0.005036
0.00000
0.00000
0.00000
Vyas, N.K.
Vyas, M.N.
Chervenak, M.C.
Bundle, D.R.
Pinto, B.M.
Quiocho, F.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
69.310
69.310
198.560
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
100
15023
15028
10.1073/pnas.2431286100
14645714
Structural basis of peptide-carbohydrate mimicry in an antibody combining site.
2003
US
Biochemistry
BICHAW
0033
0006-2960
41
13575
13586
10.1021/bi0261387
Molecular recognition of oligosaccharide epitopes by a monoclonal Fab sepcific for Shigella flexneri Y lipopolysaccharide: X-ray structures and thermodynamics.
2002
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
231
133
136
10.1006/jmbi.1993.1262
Preliminary crystallographic analysis of a Fab specific for the O-antigen of Shigella flexneri cell surface lipopoysaccharide with and without bound saccharides
1993
10.2210/pdb1pz5/pdb
pdb_00001pz5
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
mirrors
IMAGE PLATE
RIGAKU RAXIS IV
SINGLE WAVELENGTH
M
x-ray
1
0.948
1.0
X4A
NSLS
0.948
SYNCHROTRON
NSLS BEAMLINE X4A
23717.350
Light chain of Fab (SYA/J6)
1
nat
polymer
23563.404
Heavy chain of Fab (SYA/J6)
1
nat
polymer
976.110
Octapeptide (MDWNMHAA)
1
syn
polymer
18.015
water
511
nat
water
no
no
DVVLTQTPLSLPVRLGDQASISCRSSQSLLHSDGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI
SRVEAEDLGVYFCSQTTHVPTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ
NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
DVVLTQTPLSLPVRLGDQASISCRSSQSLLHSDGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI
SRVEAEDLGVYFCSQTTHVPTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ
NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
A
polypeptide(L)
no
no
EVKVEESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSS
VYLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVK
WNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTVICNVAHPASKVDLIKEISGP
EVKVEESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSS
VYLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVK
WNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTVICNVAHPASKVDLIKEISGP
B
polypeptide(L)
no
no
MDWNMHAA
MDWNMHAA
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
sample
10090
spleen
Mus musculus
BALB/C
house mouse
Mus
sample
10090
spleen
Mus musculus
BALB/C
1
2.47
50.19
VAPOR DIFFUSION
6.5
MPD, potassium phoshphate, pH 6.5, VAPOR DIFFUSION, temperature 277.0K
277.0
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Atomic model
Data collection
Database references
Refinement description
1
0
2003-11-18
1
1
2008-04-29
1
2
2011-07-13
1
3
2011-11-16
1
4
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Unliganded form of the Fab
Oligosaccharide bound form of the Fab
Oligosaccharide bound form of the Fab
SEQUENCE
No database reference sequence was found for the
proteins in this structure at the time of processing.
RCSB
Y
RCSB
2003-07-09
REL
HOH
water
The octapeptide was synthesized as its carboxamide (Alberta peptide Institure, Edmonton, Canada)
sample
1M71
PDB ENTRY 1M71
PDB
experimental model
HOH
3
4
HOH
HOH
212
A
HOH
6
4
HOH
HOH
213
A
HOH
17
4
HOH
HOH
214
A
HOH
19
4
HOH
HOH
215
A
HOH
20
4
HOH
HOH
216
A
HOH
21
4
HOH
HOH
217
A
HOH
24
4
HOH
HOH
218
A
HOH
27
4
HOH
HOH
219
A
HOH
29
4
HOH
HOH
220
A
HOH
30
4
HOH
HOH
221
A
HOH
32
4
HOH
HOH
222
A
HOH
33
4
HOH
HOH
223
A
HOH
34
4
HOH
HOH
224
A
HOH
35
4
HOH
HOH
225
A
HOH
36
4
HOH
HOH
226
A
HOH
37
4
HOH
HOH
227
A
HOH
38
4
HOH
HOH
228
A
HOH
41
4
HOH
HOH
229
A
HOH
42
4
HOH
HOH
230
A
HOH
43
4
HOH
HOH
231
A
HOH
44
4
HOH
HOH
232
A
HOH
46
4
HOH
HOH
233
A
HOH
47
4
HOH
HOH
234
A
HOH
52
4
HOH
HOH
235
A
HOH
53
4
HOH
HOH
236
A
HOH
56
4
HOH
HOH
237
A
HOH
57
4
HOH
HOH
238
A
HOH
58
4
HOH
HOH
239
A
HOH
60
4
HOH
HOH
240
A
HOH
62
4
HOH
HOH
241
A
HOH
63
4
HOH
HOH
242
A
HOH
66
4
HOH
HOH
243
A
HOH
68
4
HOH
HOH
244
A
HOH
69
4
HOH
HOH
245
A
HOH
72
4
HOH
HOH
246
A
HOH
74
4
HOH
HOH
247
A
HOH
78
4
HOH
HOH
248
A
HOH
79
4
HOH
HOH
249
A
HOH
81
4
HOH
HOH
250
A
HOH
82
4
HOH
HOH
251
A
HOH
83
4
HOH
HOH
252
A
HOH
86
4
HOH
HOH
253
A
HOH
87
4
HOH
HOH
254
A
HOH
92
4
HOH
HOH
255
A
HOH
93
4
HOH
HOH
256
A
HOH
94
4
HOH
HOH
257
A
HOH
96
4
HOH
HOH
258
A
HOH
98
4
HOH
HOH
259
A
HOH
100
4
HOH
HOH
260
A
HOH
101
4
HOH
HOH
261
A
HOH
103
4
HOH
HOH
262
A
HOH
104
4
HOH
HOH
263
A
HOH
105
4
HOH
HOH
264
A
HOH
106
4
HOH
HOH
265
A
HOH
107
4
HOH
HOH
266
A
HOH
109
4
HOH
HOH
267
A
HOH
110
4
HOH
HOH
268
A
HOH
114
4
HOH
HOH
269
A
HOH
116
4
HOH
HOH
270
A
HOH
117
4
HOH
HOH
271
A
HOH
118
4
HOH
HOH
272
A
HOH
121
4
HOH
HOH
273
A
HOH
124
4
HOH
HOH
274
A
HOH
125
4
HOH
HOH
275
A
HOH
126
4
HOH
HOH
276
A
HOH
128
4
HOH
HOH
277
A
HOH
129
4
HOH
HOH
278
A
HOH
130
4
HOH
HOH
279
A
HOH
131
4
HOH
HOH
280
A
HOH
132
4
HOH
HOH
281
A
HOH
133
4
HOH
HOH
282
A
HOH
134
4
HOH
HOH
283
A
HOH
138
4
HOH
HOH
284
A
HOH
139
4
HOH
HOH
285
A
HOH
140
4
HOH
HOH
286
A
HOH
141
4
HOH
HOH
287
A
HOH
142
4
HOH
HOH
288
A
HOH
145
4
HOH
HOH
289
A
HOH
149
4
HOH
HOH
290
A
HOH
150
4
HOH
HOH
291
A
HOH
151
4
HOH
HOH
292
A
HOH
154
4
HOH
HOH
293
A
HOH
155
4
HOH
HOH
294
A
HOH
157
4
HOH
HOH
295
A
HOH
158
4
HOH
HOH
296
A
HOH
159
4
HOH
HOH
297
A
HOH
160
4
HOH
HOH
298
A
HOH
162
4
HOH
HOH
299
A
HOH
165
4
HOH
HOH
300
A
HOH
167
4
HOH
HOH
301
A
HOH
171
4
HOH
HOH
302
A
HOH
172
4
HOH
HOH
303
A
HOH
175
4
HOH
HOH
304
A
HOH
177
4
HOH
HOH
305
A
HOH
182
4
HOH
HOH
306
A
HOH
183
4
HOH
HOH
307
A
HOH
186
4
HOH
HOH
308
A
HOH
187
4
HOH
HOH
309
A
HOH
188
4
HOH
HOH
310
A
HOH
189
4
HOH
HOH
311
A
HOH
190
4
HOH
HOH
312
A
HOH
191
4
HOH
HOH
313
A
HOH
192
4
HOH
HOH
314
A
HOH
195
4
HOH
HOH
315
A
HOH
197
4
HOH
HOH
316
A
HOH
198
4
HOH
HOH
317
A
HOH
199
4
HOH
HOH
318
A
HOH
202
4
HOH
HOH
319
A
HOH
203
4
HOH
HOH
320
A
HOH
208
4
HOH
HOH
321
A
HOH
209
4
HOH
HOH
322
A
HOH
210
4
HOH
HOH
323
A
HOH
211
4
HOH
HOH
324
A
HOH
212
4
HOH
HOH
325
A
HOH
214
4
HOH
HOH
326
A
HOH
216
4
HOH
HOH
327
A
HOH
217
4
HOH
HOH
328
A
HOH
218
4
HOH
HOH
329
A
HOH
219
4
HOH
HOH
330
A
HOH
220
4
HOH
HOH
331
A
HOH
222
4
HOH
HOH
332
A
HOH
223
4
HOH
HOH
333
A
HOH
226
4
HOH
HOH
334
A
HOH
227
4
HOH
HOH
335
A
HOH
235
4
HOH
HOH
336
A
HOH
236
4
HOH
HOH
337
A
HOH
237
4
HOH
HOH
338
A
HOH
238
4
HOH
HOH
339
A
HOH
240
4
HOH
HOH
340
A
HOH
241
4
HOH
HOH
341
A
HOH
242
4
HOH
HOH
342
A
HOH
244
4
HOH
HOH
343
A
HOH
245
4
HOH
HOH
344
A
HOH
246
4
HOH
HOH
345
A
HOH
250
4
HOH
HOH
346
A
HOH
251
4
HOH
HOH
347
A
HOH
252
4
HOH
HOH
348
A
HOH
253
4
HOH
HOH
349
A
HOH
256
4
HOH
HOH
350
A
HOH
258
4
HOH
HOH
351
A
HOH
259
4
HOH
HOH
352
A
HOH
262
4
HOH
HOH
353
A
HOH
264
4
HOH
HOH
354
A
HOH
265
4
HOH
HOH
355
A
HOH
269
4
HOH
HOH
356
A
HOH
270
4
HOH
HOH
357
A
HOH
273
4
HOH
HOH
358
A
HOH
274
4
HOH
HOH
359
A
HOH
277
4
HOH
HOH
360
A
HOH
278
4
HOH
HOH
361
A
HOH
279
4
HOH
HOH
362
A
HOH
280
4
HOH
HOH
363
A
HOH
281
4
HOH
HOH
364
A
HOH
282
4
HOH
HOH
365
A
HOH
284
4
HOH
HOH
366
A
HOH
285
4
HOH
HOH
367
A
HOH
289
4
HOH
HOH
368
A
HOH
290
4
HOH
HOH
369
A
HOH
291
4
HOH
HOH
370
A
HOH
293
4
HOH
HOH
371
A
HOH
294
4
HOH
HOH
372
A
HOH
297
4
HOH
HOH
373
A
HOH
299
4
HOH
HOH
374
A
HOH
302
4
HOH
HOH
375
A
HOH
307
4
HOH
HOH
376
A
HOH
309
4
HOH
HOH
377
A
HOH
310
4
HOH
HOH
378
A
HOH
312
4
HOH
HOH
379
A
HOH
313
4
HOH
HOH
380
A
HOH
314
4
HOH
HOH
381
A
HOH
315
4
HOH
HOH
382
A
HOH
318
4
HOH
HOH
383
A
HOH
319
4
HOH
HOH
384
A
HOH
320
4
HOH
HOH
385
A
HOH
321
4
HOH
HOH
386
A
HOH
322
4
HOH
HOH
387
A
HOH
329
4
HOH
HOH
388
A
HOH
332
4
HOH
HOH
389
A
HOH
334
4
HOH
HOH
390
A
HOH
335
4
HOH
HOH
391
A
HOH
339
4
HOH
HOH
392
A
HOH
341
4
HOH
HOH
393
A
HOH
342
4
HOH
HOH
394
A
HOH
344
4
HOH
HOH
395
A
HOH
346
4
HOH
HOH
396
A
HOH
348
4
HOH
HOH
397
A
HOH
354
4
HOH
HOH
398
A
HOH
356
4
HOH
HOH
399
A
HOH
357
4
HOH
HOH
400
A
HOH
358
4
HOH
HOH
401
A
HOH
362
4
HOH
HOH
402
A
HOH
365
4
HOH
HOH
403
A
HOH
369
4
HOH
HOH
404
A
HOH
370
4
HOH
HOH
405
A
HOH
371
4
HOH
HOH
406
A
HOH
373
4
HOH
HOH
407
A
HOH
374
4
HOH
HOH
408
A
HOH
376
4
HOH
HOH
409
A
HOH
378
4
HOH
HOH
410
A
HOH
380
4
HOH
HOH
411
A
HOH
381
4
HOH
HOH
412
A
HOH
383
4
HOH
HOH
413
A
HOH
385
4
HOH
HOH
414
A
HOH
389
4
HOH
HOH
415
A
HOH
390
4
HOH
HOH
416
A
HOH
394
4
HOH
HOH
417
A
HOH
396
4
HOH
HOH
418
A
HOH
397
4
HOH
HOH
419
A
HOH
398
4
HOH
HOH
420
A
HOH
401
4
HOH
HOH
421
A
HOH
402
4
HOH
HOH
422
A
HOH
403
4
HOH
HOH
423
A
HOH
406
4
HOH
HOH
424
A
HOH
408
4
HOH
HOH
425
A
HOH
409
4
HOH
HOH
426
A
HOH
412
4
HOH
HOH
427
A
HOH
413
4
HOH
HOH
428
A
HOH
415
4
HOH
HOH
429
A
HOH
418
4
HOH
HOH
430
A
HOH
419
4
HOH
HOH
431
A
HOH
424
4
HOH
HOH
432
A
HOH
427
4
HOH
HOH
433
A
HOH
428
4
HOH
HOH
434
A
HOH
432
4
HOH
HOH
435
A
HOH
435
4
HOH
HOH
436
A
HOH
436
4
HOH
HOH
437
A
HOH
437
4
HOH
HOH
438
A
HOH
438
4
HOH
HOH
439
A
HOH
441
4
HOH
HOH
440
A
HOH
443
4
HOH
HOH
441
A
HOH
444
4
HOH
HOH
442
A
HOH
445
4
HOH
HOH
443
A
HOH
446
4
HOH
HOH
444
A
HOH
451
4
HOH
HOH
445
A
HOH
454
4
HOH
HOH
446
A
HOH
456
4
HOH
HOH
447
A
HOH
458
4
HOH
HOH
448
A
HOH
459
4
HOH
HOH
449
A
HOH
461
4
HOH
HOH
450
A
HOH
462
4
HOH
HOH
451
A
HOH
463
4
HOH
HOH
452
A
HOH
465
4
HOH
HOH
453
A
HOH
467
4
HOH
HOH
454
A
HOH
468
4
HOH
HOH
455
A
HOH
469
4
HOH
HOH
456
A
HOH
471
4
HOH
HOH
457
A
HOH
473
4
HOH
HOH
458
A
HOH
474
4
HOH
HOH
459
A
HOH
476
4
HOH
HOH
460
A
HOH
478
4
HOH
HOH
461
A
HOH
479
4
HOH
HOH
462
A
HOH
480
4
HOH
HOH
463
A
HOH
481
4
HOH
HOH
464
A
HOH
485
4
HOH
HOH
465
A
HOH
490
4
HOH
HOH
466
A
HOH
491
4
HOH
HOH
467
A
HOH
497
4
HOH
HOH
468
A
HOH
499
4
HOH
HOH
469
A
HOH
503
4
HOH
HOH
470
A
HOH
505
4
HOH
HOH
471
A
HOH
507
4
HOH
HOH
472
A
HOH
511
4
HOH
HOH
473
A
HOH
9
4
HOH
HOH
214
B
HOH
15
4
HOH
HOH
215
B
HOH
16
4
HOH
HOH
216
B
HOH
18
4
HOH
HOH
217
B
HOH
22
4
HOH
HOH
218
B
HOH
23
4
HOH
HOH
219
B
HOH
25
4
HOH
HOH
220
B
HOH
26
4
HOH
HOH
221
B
HOH
28
4
HOH
HOH
222
B
HOH
31
4
HOH
HOH
223
B
HOH
39
4
HOH
HOH
224
B
HOH
40
4
HOH
HOH
225
B
HOH
45
4
HOH
HOH
226
B
HOH
48
4
HOH
HOH
227
B
HOH
49
4
HOH
HOH
228
B
HOH
50
4
HOH
HOH
229
B
HOH
51
4
HOH
HOH
230
B
HOH
54
4
HOH
HOH
231
B
HOH
55
4
HOH
HOH
232
B
HOH
59
4
HOH
HOH
233
B
HOH
61
4
HOH
HOH
234
B
HOH
64
4
HOH
HOH
235
B
HOH
65
4
HOH
HOH
236
B
HOH
67
4
HOH
HOH
237
B
HOH
70
4
HOH
HOH
238
B
HOH
71
4
HOH
HOH
239
B
HOH
73
4
HOH
HOH
240
B
HOH
75
4
HOH
HOH
241
B
HOH
76
4
HOH
HOH
242
B
HOH
77
4
HOH
HOH
243
B
HOH
80
4
HOH
HOH
244
B
HOH
84
4
HOH
HOH
245
B
HOH
85
4
HOH
HOH
246
B
HOH
88
4
HOH
HOH
247
B
HOH
89
4
HOH
HOH
248
B
HOH
90
4
HOH
HOH
249
B
HOH
91
4
HOH
HOH
250
B
HOH
95
4
HOH
HOH
251
B
HOH
97
4
HOH
HOH
252
B
HOH
99
4
HOH
HOH
253
B
HOH
102
4
HOH
HOH
254
B
HOH
108
4
HOH
HOH
255
B
HOH
111
4
HOH
HOH
256
B
HOH
112
4
HOH
HOH
257
B
HOH
113
4
HOH
HOH
258
B
HOH
115
4
HOH
HOH
259
B
HOH
119
4
HOH
HOH
260
B
HOH
120
4
HOH
HOH
261
B
HOH
122
4
HOH
HOH
262
B
HOH
123
4
HOH
HOH
263
B
HOH
127
4
HOH
HOH
264
B
HOH
135
4
HOH
HOH
265
B
HOH
136
4
HOH
HOH
266
B
HOH
137
4
HOH
HOH
267
B
HOH
143
4
HOH
HOH
268
B
HOH
144
4
HOH
HOH
269
B
HOH
146
4
HOH
HOH
270
B
HOH
147
4
HOH
HOH
271
B
HOH
148
4
HOH
HOH
272
B
HOH
152
4
HOH
HOH
273
B
HOH
153
4
HOH
HOH
274
B
HOH
156
4
HOH
HOH
275
B
HOH
161
4
HOH
HOH
276
B
HOH
163
4
HOH
HOH
277
B
HOH
164
4
HOH
HOH
278
B
HOH
166
4
HOH
HOH
279
B
HOH
168
4
HOH
HOH
280
B
HOH
169
4
HOH
HOH
281
B
HOH
170
4
HOH
HOH
282
B
HOH
173
4
HOH
HOH
283
B
HOH
174
4
HOH
HOH
284
B
HOH
176
4
HOH
HOH
285
B
HOH
178
4
HOH
HOH
286
B
HOH
179
4
HOH
HOH
287
B
HOH
180
4
HOH
HOH
288
B
HOH
181
4
HOH
HOH
289
B
HOH
184
4
HOH
HOH
290
B
HOH
185
4
HOH
HOH
291
B
HOH
193
4
HOH
HOH
292
B
HOH
194
4
HOH
HOH
293
B
HOH
196
4
HOH
HOH
294
B
HOH
200
4
HOH
HOH
295
B
HOH
201
4
HOH
HOH
296
B
HOH
204
4
HOH
HOH
297
B
HOH
205
4
HOH
HOH
298
B
HOH
206
4
HOH
HOH
299
B
HOH
207
4
HOH
HOH
300
B
HOH
213
4
HOH
HOH
301
B
HOH
215
4
HOH
HOH
302
B
HOH
221
4
HOH
HOH
303
B
HOH
224
4
HOH
HOH
304
B
HOH
225
4
HOH
HOH
305
B
HOH
228
4
HOH
HOH
306
B
HOH
229
4
HOH
HOH
307
B
HOH
230
4
HOH
HOH
308
B
HOH
231
4
HOH
HOH
309
B
HOH
232
4
HOH
HOH
310
B
HOH
233
4
HOH
HOH
311
B
HOH
234
4
HOH
HOH
312
B
HOH
239
4
HOH
HOH
313
B
HOH
243
4
HOH
HOH
314
B
HOH
247
4
HOH
HOH
315
B
HOH
248
4
HOH
HOH
316
B
HOH
249
4
HOH
HOH
317
B
HOH
254
4
HOH
HOH
318
B
HOH
255
4
HOH
HOH
319
B
HOH
257
4
HOH
HOH
320
B
HOH
260
4
HOH
HOH
321
B
HOH
261
4
HOH
HOH
322
B
HOH
263
4
HOH
HOH
323
B
HOH
266
4
HOH
HOH
324
B
HOH
267
4
HOH
HOH
325
B
HOH
268
4
HOH
HOH
326
B
HOH
271
4
HOH
HOH
327
B
HOH
272
4
HOH
HOH
328
B
HOH
275
4
HOH
HOH
329
B
HOH
276
4
HOH
HOH
330
B
HOH
283
4
HOH
HOH
331
B
HOH
286
4
HOH
HOH
332
B
HOH
287
4
HOH
HOH
333
B
HOH
288
4
HOH
HOH
334
B
HOH
292
4
HOH
HOH
335
B
HOH
295
4
HOH
HOH
336
B
HOH
296
4
HOH
HOH
337
B
HOH
298
4
HOH
HOH
338
B
HOH
300
4
HOH
HOH
339
B
HOH
301
4
HOH
HOH
340
B
HOH
303
4
HOH
HOH
341
B
HOH
304
4
HOH
HOH
342
B
HOH
305
4
HOH
HOH
343
B
HOH
306
4
HOH
HOH
344
B
HOH
308
4
HOH
HOH
345
B
HOH
311
4
HOH
HOH
346
B
HOH
316
4
HOH
HOH
347
B
HOH
317
4
HOH
HOH
348
B
HOH
323
4
HOH
HOH
349
B
HOH
324
4
HOH
HOH
350
B
HOH
325
4
HOH
HOH
351
B
HOH
326
4
HOH
HOH
352
B
HOH
327
4
HOH
HOH
353
B
HOH
328
4
HOH
HOH
354
B
HOH
330
4
HOH
HOH
355
B
HOH
331
4
HOH
HOH
356
B
HOH
333
4
HOH
HOH
357
B
HOH
337
4
HOH
HOH
358
B
HOH
338
4
HOH
HOH
359
B
HOH
340
4
HOH
HOH
360
B
HOH
343
4
HOH
HOH
361
B
HOH
345
4
HOH
HOH
362
B
HOH
347
4
HOH
HOH
363
B
HOH
349
4
HOH
HOH
364
B
HOH
350
4
HOH
HOH
365
B
HOH
351
4
HOH
HOH
366
B
HOH
352
4
HOH
HOH
367
B
HOH
353
4
HOH
HOH
368
B
HOH
355
4
HOH
HOH
369
B
HOH
359
4
HOH
HOH
370
B
HOH
360
4
HOH
HOH
371
B
HOH
361
4
HOH
HOH
372
B
HOH
363
4
HOH
HOH
373
B
HOH
364
4
HOH
HOH
374
B
HOH
366
4
HOH
HOH
375
B
HOH
367
4
HOH
HOH
376
B
HOH
368
4
HOH
HOH
377
B
HOH
372
4
HOH
HOH
378
B
HOH
375
4
HOH
HOH
379
B
HOH
377
4
HOH
HOH
380
B
HOH
379
4
HOH
HOH
381
B
HOH
382
4
HOH
HOH
382
B
HOH
384
4
HOH
HOH
383
B
HOH
386
4
HOH
HOH
384
B
HOH
387
4
HOH
HOH
385
B
HOH
388
4
HOH
HOH
386
B
HOH
391
4
HOH
HOH
387
B
HOH
392
4
HOH
HOH
388
B
HOH
393
4
HOH
HOH
389
B
HOH
395
4
HOH
HOH
390
B
HOH
399
4
HOH
HOH
391
B
HOH
400
4
HOH
HOH
392
B
HOH
404
4
HOH
HOH
393
B
HOH
405
4
HOH
HOH
394
B
HOH
407
4
HOH
HOH
395
B
HOH
410
4
HOH
HOH
396
B
HOH
411
4
HOH
HOH
397
B
HOH
414
4
HOH
HOH
398
B
HOH
416
4
HOH
HOH
399
B
HOH
417
4
HOH
HOH
400
B
HOH
420
4
HOH
HOH
401
B
HOH
421
4
HOH
HOH
402
B
HOH
422
4
HOH
HOH
403
B
HOH
423
4
HOH
HOH
404
B
HOH
425
4
HOH
HOH
405
B
HOH
426
4
HOH
HOH
406
B
HOH
429
4
HOH
HOH
407
B
HOH
430
4
HOH
HOH
408
B
HOH
431
4
HOH
HOH
409
B
HOH
433
4
HOH
HOH
410
B
HOH
434
4
HOH
HOH
411
B
HOH
439
4
HOH
HOH
412
B
HOH
442
4
HOH
HOH
413
B
HOH
447
4
HOH
HOH
414
B
HOH
448
4
HOH
HOH
415
B
HOH
449
4
HOH
HOH
416
B
HOH
450
4
HOH
HOH
417
B
HOH
452
4
HOH
HOH
418
B
HOH
453
4
HOH
HOH
419
B
HOH
455
4
HOH
HOH
420
B
HOH
457
4
HOH
HOH
421
B
HOH
460
4
HOH
HOH
422
B
HOH
464
4
HOH
HOH
423
B
HOH
466
4
HOH
HOH
424
B
HOH
470
4
HOH
HOH
425
B
HOH
472
4
HOH
HOH
426
B
HOH
475
4
HOH
HOH
427
B
HOH
477
4
HOH
HOH
428
B
HOH
482
4
HOH
HOH
429
B
HOH
483
4
HOH
HOH
430
B
HOH
484
4
HOH
HOH
431
B
HOH
486
4
HOH
HOH
432
B
HOH
487
4
HOH
HOH
433
B
HOH
488
4
HOH
HOH
434
B
HOH
489
4
HOH
HOH
435
B
HOH
492
4
HOH
HOH
436
B
HOH
493
4
HOH
HOH
437
B
HOH
494
4
HOH
HOH
438
B
HOH
495
4
HOH
HOH
439
B
HOH
496
4
HOH
HOH
440
B
HOH
498
4
HOH
HOH
441
B
HOH
500
4
HOH
HOH
442
B
HOH
502
4
HOH
HOH
443
B
HOH
504
4
HOH
HOH
444
B
HOH
506
4
HOH
HOH
445
B
HOH
508
4
HOH
HOH
446
B
HOH
509
4
HOH
HOH
447
B
HOH
510
4
HOH
HOH
448
B
HOH
1
4
HOH
HOH
9
C
HOH
2
4
HOH
HOH
10
C
HOH
4
4
HOH
HOH
11
C
HOH
5
4
HOH
HOH
12
C
HOH
7
4
HOH
HOH
13
C
HOH
8
4
HOH
HOH
14
C
HOH
10
4
HOH
HOH
15
C
HOH
11
4
HOH
HOH
16
C
HOH
12
4
HOH
HOH
17
C
HOH
13
4
HOH
HOH
18
C
HOH
14
4
HOH
HOH
19
C
HOH
336
4
HOH
HOH
20
C
HOH
440
4
HOH
HOH
21
C
HOH
501
4
HOH
HOH
22
C
ASP
1
n
1
ASP
1
A
VAL
2
n
2
VAL
2
A
VAL
3
n
3
VAL
3
A
LEU
4
n
4
LEU
4
A
THR
5
n
5
THR
5
A
GLN
6
n
6
GLN
6
A
THR
7
n
7
THR
7
A
PRO
8
n
8
PRO
8
A
LEU
9
n
9
LEU
9
A
SER
10
n
10
SER
10
A
LEU
11
n
11
LEU
11
A
PRO
12
n
12
PRO
12
A
VAL
13
n
13
VAL
13
A
ARG
14
n
14
ARG
14
A
LEU
15
n
15
LEU
15
A
GLY
16
n
16
GLY
16
A
ASP
17
n
17
ASP
17
A
GLN
18
n
18
GLN
18
A
ALA
19
n
19
ALA
19
A
SER
20
n
20
SER
20
A
ILE
21
n
21
ILE
21
A
SER
22
n
22
SER
22
A
CYS
23
n
23
CYS
23
A
ARG
24
n
24
ARG
24
A
SER
25
n
25
SER
25
A
SER
26
n
26
SER
26
A
GLN
27
n
27
GLN
27
A
SER
27
n
28
A
SER
27
A
LEU
27
n
29
B
LEU
27
A
LEU
27
n
30
C
LEU
27
A
HIS
27
n
31
D
HIS
27
A
SER
27
n
32
E
SER
27
A
ASP
28
n
33
ASP
28
A
GLY
29
n
34
GLY
29
A
ASN
30
n
35
ASN
30
A
THR
31
n
36
THR
31
A
TYR
32
n
37
TYR
32
A
LEU
33
n
38
LEU
33
A
HIS
34
n
39
HIS
34
A
TRP
35
n
40
TRP
35
A
TYR
36
n
41
TYR
36
A
LEU
37
n
42
LEU
37
A
GLN
38
n
43
GLN
38
A
LYS
39
n
44
LYS
39
A
PRO
40
n
45
PRO
40
A
GLY
41
n
46
GLY
41
A
GLN
42
n
47
GLN
42
A
SER
43
n
48
SER
43
A
PRO
44
n
49
PRO
44
A
LYS
45
n
50
LYS
45
A
LEU
46
n
51
LEU
46
A
LEU
47
n
52
LEU
47
A
ILE
48
n
53
ILE
48
A
TYR
49
n
54
TYR
49
A
LYS
50
n
55
LYS
50
A
VAL
51
n
56
VAL
51
A
SER
52
n
57
SER
52
A
ASN
53
n
58
ASN
53
A
ARG
54
n
59
ARG
54
A
PHE
55
n
60
PHE
55
A
SER
56
n
61
SER
56
A
GLY
57
n
62
GLY
57
A
VAL
58
n
63
VAL
58
A
PRO
59
n
64
PRO
59
A
ASP
60
n
65
ASP
60
A
ARG
61
n
66
ARG
61
A
PHE
62
n
67
PHE
62
A
SER
63
n
68
SER
63
A
GLY
64
n
69
GLY
64
A
SER
65
n
70
SER
65
A
GLY
66
n
71
GLY
66
A
SER
67
n
72
SER
67
A
GLY
68
n
73
GLY
68
A
THR
69
n
74
THR
69
A
ASP
70
n
75
ASP
70
A
PHE
71
n
76
PHE
71
A
THR
72
n
77
THR
72
A
LEU
73
n
78
LEU
73
A
LYS
74
n
79
LYS
74
A
ILE
75
n
80
ILE
75
A
SER
76
n
81
SER
76
A
ARG
77
n
82
ARG
77
A
VAL
78
n
83
VAL
78
A
GLU
79
n
84
GLU
79
A
ALA
80
n
85
ALA
80
A
GLU
81
n
86
GLU
81
A
ASP
82
n
87
ASP
82
A
LEU
83
n
88
LEU
83
A
GLY
84
n
89
GLY
84
A
VAL
85
n
90
VAL
85
A
TYR
86
n
91
TYR
86
A
PHE
87
n
92
PHE
87
A
CYS
88
n
93
CYS
88
A
SER
89
n
94
SER
89
A
GLN
90
n
95
GLN
90
A
THR
91
n
96
THR
91
A
THR
92
n
97
THR
92
A
HIS
93
n
98
HIS
93
A
VAL
94
n
99
VAL
94
A
PRO
95
n
100
PRO
95
A
THR
97
n
101
THR
97
A
PHE
98
n
102
PHE
98
A
GLY
99
n
103
GLY
99
A
GLY
100
n
104
GLY
100
A
GLY
101
n
105
GLY
101
A
THR
102
n
106
THR
102
A
LYS
103
n
107
LYS
103
A
LEU
104
n
108
LEU
104
A
GLU
105
n
109
GLU
105
A
ILE
106
n
110
ILE
106
A
LYS
107
n
111
LYS
107
A
ARG
108
n
112
ARG
108
A
ALA
109
n
113
ALA
109
A
ASP
110
n
114
ASP
110
A
ALA
111
n
115
ALA
111
A
ALA
112
n
116
ALA
112
A
PRO
113
n
117
PRO
113
A
THR
114
n
118
THR
114
A
VAL
115
n
119
VAL
115
A
SER
116
n
120
SER
116
A
ILE
117
n
121
ILE
117
A
PHE
118
n
122
PHE
118
A
PRO
119
n
123
PRO
119
A
PRO
120
n
124
PRO
120
A
SER
121
n
125
SER
121
A
SER
122
n
126
SER
122
A
GLU
123
n
127
GLU
123
A
GLN
124
n
128
GLN
124
A
LEU
125
n
129
LEU
125
A
THR
126
n
130
THR
126
A
SER
127
n
131
SER
127
A
GLY
128
n
132
GLY
128
A
GLY
129
n
133
GLY
129
A
ALA
130
n
134
ALA
130
A
SER
131
n
135
SER
131
A
VAL
132
n
136
VAL
132
A
VAL
133
n
137
VAL
133
A
CYS
134
n
138
CYS
134
A
PHE
135
n
139
PHE
135
A
LEU
136
n
140
LEU
136
A
ASN
137
n
141
ASN
137
A
ASN
138
n
142
ASN
138
A
PHE
139
n
143
PHE
139
A
TYR
140
n
144
TYR
140
A
PRO
141
n
145
PRO
141
A
LYS
142
n
146
LYS
142
A
ASP
143
n
147
ASP
143
A
ILE
144
n
148
ILE
144
A
ASN
145
n
149
ASN
145
A
VAL
146
n
150
VAL
146
A
LYS
147
n
151
LYS
147
A
TRP
148
n
152
TRP
148
A
LYS
149
n
153
LYS
149
A
ILE
150
n
154
ILE
150
A
ASP
151
n
155
ASP
151
A
GLY
152
n
156
GLY
152
A
SER
153
n
157
SER
153
A
GLU
154
n
158
GLU
154
A
ARG
155
n
159
ARG
155
A
GLN
156
n
160
GLN
156
A
ASN
157
n
161
ASN
157
A
GLY
158
n
162
GLY
158
A
VAL
159
n
163
VAL
159
A
LEU
160
n
164
LEU
160
A
ASN
161
n
165
ASN
161
A
SER
162
n
166
SER
162
A
TRP
163
n
167
TRP
163
A
THR
164
n
168
THR
164
A
ASP
165
n
169
ASP
165
A
GLN
166
n
170
GLN
166
A
ASP
167
n
171
ASP
167
A
SER
168
n
172
SER
168
A
LYS
169
n
173
LYS
169
A
ASP
170
n
174
ASP
170
A
SER
171
n
175
SER
171
A
THR
172
n
176
THR
172
A
TYR
173
n
177
TYR
173
A
SER
174
n
178
SER
174
A
MET
175
n
179
MET
175
A
SER
176
n
180
SER
176
A
SER
177
n
181
SER
177
A
THR
178
n
182
THR
178
A
LEU
179
n
183
LEU
179
A
THR
180
n
184
THR
180
A
LEU
181
n
185
LEU
181
A
THR
182
n
186
THR
182
A
LYS
183
n
187
LYS
183
A
ASP
184
n
188
ASP
184
A
GLU
185
n
189
GLU
185
A
TYR
186
n
190
TYR
186
A
GLU
187
n
191
GLU
187
A
ARG
188
n
192
ARG
188
A
HIS
189
n
193
HIS
189
A
ASN
190
n
194
ASN
190
A
SER
191
n
195
SER
191
A
TYR
192
n
196
TYR
192
A
THR
193
n
197
THR
193
A
CYS
194
n
198
CYS
194
A
GLU
195
n
199
GLU
195
A
ALA
196
n
200
ALA
196
A
THR
197
n
201
THR
197
A
HIS
198
n
202
HIS
198
A
LYS
199
n
203
LYS
199
A
THR
200
n
204
THR
200
A
SER
201
n
205
SER
201
A
THR
202
n
206
THR
202
A
SER
203
n
207
SER
203
A
PRO
204
n
208
PRO
204
A
ILE
205
n
209
ILE
205
A
VAL
206
n
210
VAL
206
A
LYS
207
n
211
LYS
207
A
SER
208
n
212
SER
208
A
PHE
209
n
213
PHE
209
A
ASN
210
n
214
ASN
210
A
ARG
211
n
215
ARG
211
A
GLU
1
n
1
GLU
1
B
VAL
2
n
2
VAL
2
B
LYS
3
n
3
LYS
3
B
VAL
4
n
4
VAL
4
B
GLU
5
n
5
GLU
5
B
GLU
6
n
6
GLU
6
B
SER
7
n
7
SER
7
B
GLY
8
n
8
GLY
8
B
GLY
9
n
9
GLY
9
B
GLY
10
n
10
GLY
10
B
LEU
11
n
11
LEU
11
B
VAL
12
n
12
VAL
12
B
GLN
13
n
13
GLN
13
B
PRO
14
n
14
PRO
14
B
GLY
15
n
15
GLY
15
B
GLY
16
n
16
GLY
16
B
SER
17
n
17
SER
17
B
MET
18
n
18
MET
18
B
LYS
19
n
19
LYS
19
B
LEU
20
n
20
LEU
20
B
SER
21
n
21
SER
21
B
CYS
22
n
22
CYS
22
B
VAL
23
n
23
VAL
23
B
ALA
24
n
24
ALA
24
B
SER
25
n
25
SER
25
B
GLY
26
n
26
GLY
26
B
PHE
27
n
27
PHE
27
B
THR
28
n
28
THR
28
B
PHE
29
n
29
PHE
29
B
SER
30
n
30
SER
30
B
ASN
31
n
31
ASN
31
B
TYR
32
n
32
TYR
32
B
TRP
33
n
33
TRP
33
B
MET
34
n
34
MET
34
B
GLU
35
n
35
GLU
35
B
TRP
36
n
36
TRP
36
B
VAL
37
n
37
VAL
37
B
ARG
38
n
38
ARG
38
B
GLN
39
n
39
GLN
39
B
SER
40
n
40
SER
40
B
PRO
41
n
41
PRO
41
B
GLU
42
n
42
GLU
42
B
LYS
43
n
43
LYS
43
B
GLY
44
n
44
GLY
44
B
LEU
45
n
45
LEU
45
B
GLU
46
n
46
GLU
46
B
TRP
47
n
47
TRP
47
B
VAL
48
n
48
VAL
48
B
ALA
49
n
49
ALA
49
B
GLU
50
n
50
GLU
50
B
ILE
51
n
51
ILE
51
B
ARG
52
n
52
ARG
52
B
LEU
52
n
53
A
LEU
52
B
LYS
52
n
54
B
LYS
52
B
SER
52
n
55
C
SER
52
B
ASN
53
n
56
ASN
53
B
ASN
54
n
57
ASN
54
B
TYR
55
n
58
TYR
55
B
ALA
56
n
59
ALA
56
B
THR
57
n
60
THR
57
B
HIS
58
n
61
HIS
58
B
TYR
59
n
62
TYR
59
B
ALA
60
n
63
ALA
60
B
GLU
61
n
64
GLU
61
B
SER
62
n
65
SER
62
B
VAL
63
n
66
VAL
63
B
LYS
64
n
67
LYS
64
B
GLY
65
n
68
GLY
65
B
ARG
66
n
69
ARG
66
B
PHE
67
n
70
PHE
67
B
THR
68
n
71
THR
68
B
ILE
69
n
72
ILE
69
B
SER
70
n
73
SER
70
B
ARG
71
n
74
ARG
71
B
ASP
72
n
75
ASP
72
B
ASP
73
n
76
ASP
73
B
SER
74
n
77
SER
74
B
LYS
75
n
78
LYS
75
B
SER
76
n
79
SER
76
B
SER
77
n
80
SER
77
B
VAL
78
n
81
VAL
78
B
TYR
79
n
82
TYR
79
B
LEU
80
n
83
LEU
80
B
GLN
81
n
84
GLN
81
B
MET
82
n
85
MET
82
B
ASN
82
n
86
A
ASN
82
B
ASN
82
n
87
B
ASN
82
B
LEU
82
n
88
C
LEU
82
B
ARG
83
n
89
ARG
83
B
ALA
84
n
90
ALA
84
B
GLU
85
n
91
GLU
85
B
ASP
86
n
92
ASP
86
B
THR
87
n
93
THR
87
B
GLY
88
n
94
GLY
88
B
ILE
89
n
95
ILE
89
B
TYR
90
n
96
TYR
90
B
TYR
91
n
97
TYR
91
B
CYS
92
n
98
CYS
92
B
THR
93
n
99
THR
93
B
ARG
94
n
100
ARG
94
B
GLY
95
n
101
GLY
95
B
GLY
96
n
102
GLY
96
B
ALA
97
n
103
ALA
97
B
VAL
98
n
104
VAL
98
B
GLY
99
n
105
GLY
99
B
ALA
100
n
106
ALA
100
B
MET
100
n
107
A
MET
100
B
ASP
101
n
108
ASP
101
B
TYR
102
n
109
TYR
102
B
TRP
103
n
110
TRP
103
B
GLY
104
n
111
GLY
104
B
GLN
105
n
112
GLN
105
B
GLY
106
n
113
GLY
106
B
THR
107
n
114
THR
107
B
SER
108
n
115
SER
108
B
VAL
109
n
116
VAL
109
B
THR
110
n
117
THR
110
B
VAL
111
n
118
VAL
111
B
SER
112
n
119
SER
112
B
SER
113
n
120
SER
113
B
ALA
114
n
121
ALA
114
B
THR
115
n
122
THR
115
B
THR
116
n
123
THR
116
B
THR
117
n
124
THR
117
B
ALA
118
n
125
ALA
118
B
PRO
119
n
126
PRO
119
B
SER
120
n
127
SER
120
B
VAL
121
n
128
VAL
121
B
TYR
122
n
129
TYR
122
B
PRO
123
n
130
PRO
123
B
LEU
124
n
131
LEU
124
B
VAL
125
n
132
VAL
125
B
PRO
126
n
133
PRO
126
B
GLY
127
n
134
GLY
127
B
CYS
128
n
135
CYS
128
B
SER
129
n
136
SER
129
B
ASP
130
n
137
ASP
130
B
THR
131
n
138
THR
131
B
SER
132
n
139
SER
132
B
GLY
133
n
140
GLY
133
B
SER
134
n
141
SER
134
B
SER
135
n
142
SER
135
B
VAL
136
n
143
VAL
136
B
THR
137
n
144
THR
137
B
LEU
138
n
145
LEU
138
B
GLY
139
n
146
GLY
139
B
CYS
140
n
147
CYS
140
B
LEU
141
n
148
LEU
141
B
VAL
142
n
149
VAL
142
B
LYS
143
n
150
LYS
143
B
GLY
144
n
151
GLY
144
B
TYR
145
n
152
TYR
145
B
PHE
146
n
153
PHE
146
B
PRO
147
n
154
PRO
147
B
GLU
148
n
155
GLU
148
B
PRO
149
n
156
PRO
149
B
VAL
150
n
157
VAL
150
B
THR
151
n
158
THR
151
B
VAL
152
n
159
VAL
152
B
LYS
153
n
160
LYS
153
B
TRP
154
n
161
TRP
154
B
ASN
155
n
162
ASN
155
B
TYR
156
n
163
TYR
156
B
GLY
157
n
164
GLY
157
B
ALA
158
n
165
ALA
158
B
LEU
159
n
166
LEU
159
B
SER
160
n
167
SER
160
B
SER
161
n
168
SER
161
B
GLY
162
n
169
GLY
162
B
VAL
163
n
170
VAL
163
B
ARG
164
n
171
ARG
164
B
THR
165
n
172
THR
165
B
VAL
166
n
173
VAL
166
B
SER
167
n
174
SER
167
B
SER
168
n
175
SER
168
B
VAL
169
n
176
VAL
169
B
LEU
170
n
177
LEU
170
B
GLN
171
n
178
GLN
171
B
SER
172
n
179
SER
172
B
GLY
173
n
180
GLY
173
B
PHE
174
n
181
PHE
174
B
TYR
175
n
182
TYR
175
B
SER
176
n
183
SER
176
B
LEU
177
n
184
LEU
177
B
SER
178
n
185
SER
178
B
SER
179
n
186
SER
179
B
LEU
180
n
187
LEU
180
B
VAL
181
n
188
VAL
181
B
THR
182
n
189
THR
182
B
VAL
183
n
190
VAL
183
B
PRO
184
n
191
PRO
184
B
SER
185
n
192
SER
185
B
SER
186
n
193
SER
186
B
THR
187
n
194
THR
187
B
TRP
188
n
195
TRP
188
B
PRO
189
n
196
PRO
189
B
SER
190
n
197
SER
190
B
GLN
191
n
198
GLN
191
B
THR
192
n
199
THR
192
B
VAL
193
n
200
VAL
193
B
ILE
194
n
201
ILE
194
B
CYS
195
n
202
CYS
195
B
ASN
196
n
203
ASN
196
B
VAL
197
n
204
VAL
197
B
ALA
198
n
205
ALA
198
B
HIS
199
n
206
HIS
199
B
PRO
200
n
207
PRO
200
B
ALA
201
n
208
ALA
201
B
SER
202
n
209
SER
202
B
LYS
203
n
210
LYS
203
B
VAL
204
n
211
VAL
204
B
ASP
205
n
212
ASP
205
B
LEU
206
n
213
LEU
206
B
ILE
207
n
214
ILE
207
B
LYS
208
n
215
LYS
208
B
GLU
209
n
216
GLU
209
B
ILE
210
n
217
ILE
210
B
SER
211
n
218
SER
211
B
GLY
212
n
219
GLY
212
B
PRO
213
n
220
PRO
213
B
MET
1
n
1
MET
1
C
ASP
2
n
2
ASP
2
C
TRP
3
n
3
TRP
3
C
ASN
4
n
4
ASN
4
C
MET
5
n
5
MET
5
C
HIS
6
n
6
HIS
6
C
ALA
7
n
7
ALA
7
C
ALA
8
n
8
ALA
8
C
author_and_software_defined_assembly
PISA
3
trimeric
4460
-30
19500
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
5
A
N
THR
5
A
O
ARG
24
A
O
ARG
24
A
N
ILE
21
A
N
ILE
21
A
O
LEU
73
A
O
LEU
78
A
O
LYS
74
A
O
LYS
79
A
N
SER
63
A
N
SER
68
A
N
LEU
11
A
N
LEU
11
A
O
LYS
103
A
O
LYS
107
A
O
THR
102
A
O
THR
106
A
N
TYR
86
A
N
TYR
91
A
O
SER
89
A
O
SER
94
A
N
HIS
34
A
N
HIS
39
A
N
TRP
35
A
N
TRP
40
A
O
LEU
47
A
O
LEU
52
A
N
TYR
49
A
N
TYR
54
A
O
ASN
53
A
O
ASN
58
A
N
LEU
11
A
N
LEU
11
A
O
LYS
103
A
O
LYS
107
A
O
THR
102
A
O
THR
106
A
N
TYR
86
A
N
TYR
91
A
N
GLN
90
A
N
GLN
95
A
O
THR
97
A
O
THR
101
A
N
PHE
118
A
N
PHE
122
A
O
VAL
133
A
O
VAL
137
A
N
PHE
139
A
N
PHE
143
A
O
TYR
173
A
O
TYR
177
A
O
THR
178
A
O
THR
182
A
N
LEU
160
A
N
LEU
164
A
O
SER
153
A
O
SER
157
A
N
ILE
150
A
N
ILE
154
A
N
LYS
147
A
N
LYS
151
A
O
GLU
195
A
O
GLU
199
A
N
ALA
196
A
N
ALA
200
A
O
ILE
205
A
O
ILE
209
B
N
LYS
3
B
N
LYS
3
B
O
SER
25
B
O
SER
25
B
N
MET
18
B
N
MET
18
B
O
MET
82
B
O
MET
85
B
O
TYR
79
B
O
TYR
82
B
N
SER
70
B
N
SER
73
B
N
VAL
12
B
N
VAL
12
B
O
THR
110
B
O
THR
117
B
O
THR
107
B
O
THR
114
B
N
TYR
90
B
N
TYR
96
B
O
TYR
91
B
O
TYR
97
B
N
VAL
37
B
N
VAL
37
B
N
ARG
38
B
N
ARG
38
B
O
GLU
46
B
O
GLU
46
B
N
GLU
50
B
N
GLU
50
B
O
HIS
58
B
O
HIS
61
B
N
VAL
12
B
N
VAL
12
B
O
THR
110
B
O
THR
117
B
O
THR
107
B
O
THR
114
B
N
TYR
90
B
N
TYR
96
B
O
ARG
94
B
O
ARG
100
B
N
TYR
102
B
N
TYR
109
B
N
TYR
122
B
N
TYR
129
B
O
LEU
141
B
O
LEU
148
B
N
VAL
136
B
N
VAL
143
B
O
VAL
183
B
O
VAL
190
B
O
LEU
180
B
O
LEU
187
B
N
ARG
164
B
N
ARG
171
B
N
TYR
122
B
N
TYR
129
B
O
LEU
141
B
O
LEU
148
B
N
VAL
136
B
N
VAL
143
B
O
VAL
183
B
O
VAL
190
B
O
PHE
174
B
O
PHE
181
B
N
GLN
171
B
N
GLN
178
B
N
LYS
153
B
N
LYS
160
B
O
ASN
196
B
O
ASN
203
B
N
VAL
197
B
N
VAL
204
B
O
LEU
206
B
O
LEU
213
1
B
HOH
232
E
HOH
1
B
HOH
447
E
HOH
1
B
B
OG1
O
THR
HOH
131
445
0.65
1
B
B
CB
O
THR
HOH
131
445
1.72
1
11.38
1.70
123.20
134.58
B
B
B
O
C
N
PRO
PRO
GLY
126
126
127
Y
1
A
VAL
51
71.37
-49.16
1
A
PRO
141
-64.08
-178.33
1
B
MET
18
-174.48
143.88
1
B
PRO
41
-66.80
2.47
1
B
ARG
52
-95.64
-158.77
1
B
PRO
126
-47.98
107.07
1
B
CYS
128
1.87
94.88
1
B
THR
131
-60.34
94.45
1
B
SER
132
-148.59
56.07
1
B
SER
134
44.63
119.88
1
B
SER
135
-14.35
-104.69
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER_REP.TOP
TOPH1NKV.CHO
20.6
1.61
0.00
0.00
1.61
0.00
-3.21
0.254
0.004
0.219
0.219
0.219
1.80
19.97
4210
42148
41694
10.1
90.8
RANDOM
1
RESTRAINED
THROUGHOUT
0.0
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1M71
Engh & Huber
FLAT MODEL
48.9066
0.352158
0.27
0.16
1.80
19.97
511
3902
0
0
3391
0.007
1.6
26.3
0.86
0.64
1.50
0.86
2.00
0.61
2.00
0.88
2.50
0.268
0.012
0.235
1.91
464
4322
2600
6
9.7
63.8
12.3
1.8
20.0
1PZ5
42148
42148
0.0
0.0
0.042
0.042
1
35.1
4
91.7
0.12
1.8
1.86
6.5
2644
0.12
3.65
58.9
refinement
CNS
1.0
data reduction
DENZO
data scaling
SCALEPACK
phasing
CNS
Structural basis of peptide-carbohydrate mimicry in an antibody combining site
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
A
GLU
79
A
GLU
84
HELX_P
A
LEU
83
A
LEU
88
5
1
5
A
SER
121
A
SER
125
HELX_P
A
SER
127
A
SER
131
5
2
7
A
LYS
183
A
LYS
187
HELX_P
A
ARG
188
A
ARG
192
1
3
6
B
THR
28
B
THR
28
HELX_P
B
TYR
32
B
TYR
32
5
4
5
B
LEU
52
B
LEU
53
HELX_P
B
ASN
54
B
ASN
57
5
5
5
A
B
GLU
61
B
GLU
64
HELX_P
B
LYS
64
B
LYS
67
5
6
4
B
ASP
73
B
ASP
76
HELX_P
B
LYS
75
B
LYS
78
5
7
3
B
ARG
83
B
ARG
89
HELX_P
B
THR
87
B
THR
93
5
8
5
B
TYR
156
B
TYR
163
HELX_P
B
ALA
158
B
ALA
165
5
9
3
B
PRO
184
B
PRO
191
HELX_P
B
TRP
188
B
TRP
195
5
10
5
B
PRO
200
B
PRO
207
HELX_P
B
LYS
203
B
LYS
210
5
11
4
disulf
2.550
A
CYS
23
A
SG
CYS
23
1_555
A
CYS
88
A
SG
CYS
93
1_555
disulf
2.690
A
CYS
134
A
SG
CYS
138
1_555
A
CYS
194
A
SG
CYS
198
1_555
disulf
2.484
B
CYS
22
B
SG
CYS
22
1_555
B
CYS
92
B
SG
CYS
98
1_555
disulf
2.386
B
CYS
140
B
SG
CYS
147
1_555
B
CYS
195
B
SG
CYS
202
1_555
IMMUNE SYSTEM
Antibody-antigen structure, peptide-carbohydrate mimicry, vaccine design, IMMUNE SYSTEM
A
THR
7
A
THR
7
1
A
PRO
8
A
PRO
8
-0.43
A
TYR
140
A
TYR
144
1
A
PRO
141
A
PRO
145
0.00
B
PHE
146
B
PHE
153
1
B
PRO
147
B
PRO
154
-0.22
B
GLU
148
B
GLU
155
1
B
PRO
149
B
PRO
156
-0.21
B
TRP
188
B
TRP
195
1
B
PRO
189
B
PRO
196
0.31
1PZ5
PDB
1
1PZ5
1PZ5
PDB
2
1PZ5
1PZ5
PDB
3
1PZ5
1
211
1PZ5
1
211
1PZ5
A
1
1
215
1
213
1PZ5
1
213
1PZ5
B
2
1
220
1
8
1PZ5
1
8
1PZ5
C
3
1
8
4
6
4
4
4
4
6
4
4
4
3
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
4
A
LEU
4
A
THR
7
A
THR
7
A
ALA
19
A
ALA
19
A
SER
25
A
SER
25
A
ASP
70
A
ASP
75
A
ILE
75
A
ILE
80
A
PHE
62
A
PHE
67
A
SER
67
A
SER
72
A
SER
10
A
SER
10
A
ARG
14
A
ARG
14
A
THR
102
A
THR
106
A
LYS
107
A
LYS
111
A
GLY
84
A
GLY
89
A
GLN
90
A
GLN
95
A
LEU
33
A
LEU
38
A
GLN
38
A
GLN
43
A
LYS
45
A
LYS
50
A
TYR
49
A
TYR
54
A
ASN
53
A
ASN
58
A
ARG
54
A
ARG
59
A
SER
10
A
SER
10
A
ARG
14
A
ARG
14
A
THR
102
A
THR
106
A
LYS
107
A
LYS
111
A
GLY
84
A
GLY
89
A
GLN
90
A
GLN
95
A
THR
97
A
THR
101
A
PHE
98
A
PHE
102
A
THR
114
A
THR
118
A
PHE
118
A
PHE
122
A
GLY
129
A
GLY
133
A
PHE
139
A
PHE
143
A
TYR
173
A
TYR
177
A
THR
182
A
THR
186
A
VAL
159
A
VAL
163
A
TRP
163
A
TRP
167
A
SER
153
A
SER
157
A
ARG
155
A
ARG
159
A
ASN
145
A
ASN
149
A
ILE
150
A
ILE
154
A
SER
191
A
SER
195
A
THR
197
A
THR
201
A
ILE
205
A
ILE
209
A
ASN
210
A
ASN
214
B
LYS
3
B
LYS
3
B
SER
7
B
SER
7
B
MET
18
B
MET
18
B
SER
25
B
SER
25
B
SER
77
B
SER
80
B
MET
82
B
MET
85
B
PHE
67
B
PHE
70
B
ASP
72
B
ASP
75
B
GLY
10
B
GLY
10
B
VAL
12
B
VAL
12
B
THR
107
B
THR
114
B
VAL
111
B
VAL
118
B
GLY
88
B
GLY
94
B
GLY
95
B
GLY
101
B
TRP
33
B
TRP
33
B
SER
40
B
SER
40
B
GLY
44
B
GLY
44
B
ILE
51
B
ILE
51
B
THR
57
B
THR
60
B
TYR
59
B
TYR
62
B
GLY
10
B
GLY
10
B
VAL
12
B
VAL
12
B
THR
107
B
THR
114
B
VAL
111
B
VAL
118
B
GLY
88
B
GLY
94
B
GLY
95
B
GLY
101
B
MET
100
B
MET
107
B
TRP
103
B
TRP
110
A
B
SER
120
B
SER
127
B
LEU
124
B
LEU
131
B
VAL
136
B
VAL
143
B
TYR
145
B
TYR
152
B
PHE
174
B
PHE
181
B
VAL
183
B
VAL
190
B
VAL
163
B
VAL
170
B
THR
165
B
THR
172
B
SER
120
B
SER
127
B
LEU
124
B
LEU
131
B
VAL
136
B
VAL
143
B
TYR
145
B
TYR
152
B
PHE
174
B
PHE
181
B
VAL
183
B
VAL
190
B
VAL
169
B
VAL
176
B
GLN
171
B
GLN
178
B
THR
151
B
THR
158
B
TRP
154
B
TRP
161
B
ILE
194
B
ILE
201
B
HIS
199
B
HIS
206
B
VAL
204
B
VAL
211
B
GLU
209
B
GLU
216
96
P 43 21 2