0.009788 0.000000 0.007385 0.000000 0.017621 0.000000 0.000000 0.000000 0.016727 0.00000 0.00000 0.00000 Stetefeld, J. Alexandrescu, A.T. Maciejewski, M.W. Jenny, M. Rathgeb-Szabo, K. Schulthess, T. Landwehr, R. Frank, S. Ruegg, M.A. Kammerer, R.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 127.04 90.00 102.169 56.751 74.889 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK STRUCTURE STRUE6 2005 0969-2126 12 503 515 10.1016/j.str.2004.02.001 15016366 Modulation of agrin function by alternative splicing and Ca2+ binding. 2004 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M x-ray 1 1.0 1.0 BW7B EMBL/DESY, Hamburg 1.0 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B 22052.047 Agrin 2 man polymer 18.015 water 75 nat water no no EKVIIEKAAGDAEAIAFDGRTYMEYHNAVTKSHLSNEIPAEKALQSNHFELSIKTEATQGLILWSGKGLERSDYIALAIV DGFVQMMYDLGSKPVVLRSTVPINTNHWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQLDTDGALWLGGMERLSVAHK LPKAYSTGFIGCIRDVIVDRQELHLVEDALNNPTILHCSAK EKVIIEKAAGDAEAIAFDGRTYMEYHNAVTKSHLSNEIPAEKALQSNHFELSIKTEATQGLILWSGKGLERSDYIALAIV DGFVQMMYDLGSKPVVLRSTVPINTNHWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQLDTDGALWLGGMERLSVAHK LPKAYSTGFIGCIRDVIVDRQELHLVEDALNNPTILHCSAK A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n chicken Gallus Escherichia sample Basal Lamina Domain AGRN 9031 Gallus gallus 562 Escherichia coli 1.96 37.37 VAPOR DIFFUSION, HANGING DROP 6.5 PEG 8000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 276K 276 repository Initial release Version format compliance Version format compliance 1 0 2004-04-13 1 1 2008-04-29 1 2 2011-07-13 G3 domain of agrin with B11 insert and with calcium G3 domain of agrin with B8 insert and with calcium NMR structure of the B0 isoform of the agrin G3 domain in its Ca2+ bound state SEQUENCE the c-terminal agrin domain has alternative splice variants, we solved the structure of B11 (1pz7) and B8 with (1pz8) and without (1pz9) calcium, therefore the sequence-file conatins either 11 or 8 residues more than the so called B0-insert, the insert starts at TKS- and ends at EKA, B11:PDALDYPAEPS B8:HLSNEIPA however, not all the splice-residues are detectable in the electron density map RCSB Y RCSB 2003-07-10 REL HOH water HOH 2 2 HOH HOH 202 A HOH 6 2 HOH HOH 203 A HOH 7 2 HOH HOH 204 A HOH 8 2 HOH HOH 205 A HOH 9 2 HOH HOH 206 A HOH 11 2 HOH HOH 207 A HOH 13 2 HOH HOH 208 A HOH 16 2 HOH HOH 209 A HOH 21 2 HOH HOH 210 A HOH 24 2 HOH HOH 211 A HOH 27 2 HOH HOH 212 A HOH 29 2 HOH HOH 213 A HOH 33 2 HOH HOH 214 A HOH 36 2 HOH HOH 215 A HOH 38 2 HOH HOH 216 A HOH 40 2 HOH HOH 217 A HOH 46 2 HOH HOH 218 A HOH 50 2 HOH HOH 219 A HOH 51 2 HOH HOH 220 A HOH 57 2 HOH HOH 221 A HOH 61 2 HOH HOH 222 A HOH 62 2 HOH HOH 223 A HOH 63 2 HOH HOH 224 A HOH 64 2 HOH HOH 225 A HOH 65 2 HOH HOH 226 A HOH 67 2 HOH HOH 227 A HOH 72 2 HOH HOH 228 A HOH 73 2 HOH HOH 229 A HOH 74 2 HOH HOH 230 A HOH 75 2 HOH HOH 231 A HOH 76 2 HOH HOH 232 A HOH 78 2 HOH HOH 233 A HOH 79 2 HOH HOH 234 A HOH 81 2 HOH HOH 235 A HOH 83 2 HOH HOH 236 A HOH 85 2 HOH HOH 237 A HOH 88 2 HOH HOH 238 A HOH 89 2 HOH HOH 239 A HOH 1 2 HOH HOH 202 B HOH 3 2 HOH HOH 203 B HOH 4 2 HOH HOH 204 B HOH 5 2 HOH HOH 205 B HOH 12 2 HOH HOH 206 B HOH 14 2 HOH HOH 207 B HOH 15 2 HOH HOH 208 B HOH 17 2 HOH HOH 209 B HOH 19 2 HOH HOH 210 B HOH 20 2 HOH HOH 211 B HOH 25 2 HOH HOH 212 B HOH 26 2 HOH HOH 213 B HOH 28 2 HOH HOH 214 B HOH 30 2 HOH HOH 215 B HOH 31 2 HOH HOH 216 B HOH 32 2 HOH HOH 217 B HOH 35 2 HOH HOH 218 B HOH 37 2 HOH HOH 219 B HOH 39 2 HOH HOH 220 B HOH 41 2 HOH HOH 221 B HOH 42 2 HOH HOH 222 B HOH 43 2 HOH HOH 223 B HOH 47 2 HOH HOH 224 B HOH 49 2 HOH HOH 225 B HOH 54 2 HOH HOH 226 B HOH 56 2 HOH HOH 227 B HOH 58 2 HOH HOH 228 B HOH 66 2 HOH HOH 229 B HOH 68 2 HOH HOH 230 B HOH 69 2 HOH HOH 231 B HOH 70 2 HOH HOH 232 B HOH 71 2 HOH HOH 233 B HOH 77 2 HOH HOH 234 B HOH 80 2 HOH HOH 235 B HOH 84 2 HOH HOH 236 B HOH 86 2 HOH HOH 237 B HOH 87 2 HOH HOH 238 B n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A n 7 7 A n 8 8 A n 9 9 A GLY 10 n 10 GLY 10 A ASP 11 n 11 ASP 11 A ALA 12 n 12 ALA 12 A GLU 13 n 13 GLU 13 A ALA 14 n 14 ALA 14 A ILE 15 n 15 ILE 15 A ALA 16 n 16 ALA 16 A PHE 17 n 17 PHE 17 A ASP 18 n 18 ASP 18 A GLY 19 n 19 GLY 19 A ARG 20 n 20 ARG 20 A THR 21 n 21 THR 21 A TYR 22 n 22 TYR 22 A MET 23 n 23 MET 23 A GLU 24 n 24 GLU 24 A TYR 25 n 25 TYR 25 A HIS 26 n 26 HIS 26 A ASN 27 n 27 ASN 27 A ALA 28 n 28 ALA 28 A VAL 29 n 29 VAL 29 A THR 30 n 30 THR 30 A LYS 31 n 31 LYS 31 A SER 32 n 32 SER 32 A HIS 33 n 33 HIS 33 A LEU 34 n 34 LEU 34 A n 35 35 A n 36 36 A n 37 37 A n 38 38 A n 39 39 A ALA 40 n 40 ALA 40 A GLU 41 n 41 GLU 41 A LYS 42 n 42 LYS 42 A ALA 43 n 43 ALA 43 A LEU 44 n 44 LEU 44 A GLN 45 n 45 GLN 45 A SER 46 n 46 SER 46 A ASN 47 n 47 ASN 47 A HIS 48 n 48 HIS 48 A PHE 49 n 49 PHE 49 A GLU 50 n 50 GLU 50 A LEU 51 n 51 LEU 51 A SER 52 n 52 SER 52 A ILE 53 n 53 ILE 53 A LYS 54 n 54 LYS 54 A THR 55 n 55 THR 55 A GLU 56 n 56 GLU 56 A ALA 57 n 57 ALA 57 A THR 58 n 58 THR 58 A GLN 59 n 59 GLN 59 A GLY 60 n 60 GLY 60 A LEU 61 n 61 LEU 61 A ILE 62 n 62 ILE 62 A LEU 63 n 63 LEU 63 A TRP 64 n 64 TRP 64 A SER 65 n 65 SER 65 A GLY 66 n 66 GLY 66 A LYS 67 n 67 LYS 67 A GLY 68 n 68 GLY 68 A LEU 69 n 69 LEU 69 A GLU 70 n 70 GLU 70 A ARG 71 n 71 ARG 71 A SER 72 n 72 SER 72 A ASP 73 n 73 ASP 73 A TYR 74 n 74 TYR 74 A ILE 75 n 75 ILE 75 A ALA 76 n 76 ALA 76 A LEU 77 n 77 LEU 77 A ALA 78 n 78 ALA 78 A ILE 79 n 79 ILE 79 A VAL 80 n 80 VAL 80 A ASP 81 n 81 ASP 81 A GLY 82 n 82 GLY 82 A PHE 83 n 83 PHE 83 A VAL 84 n 84 VAL 84 A GLN 85 n 85 GLN 85 A MET 86 n 86 MET 86 A MET 87 n 87 MET 87 A TYR 88 n 88 TYR 88 A ASP 89 n 89 ASP 89 A LEU 90 n 90 LEU 90 A GLY 91 n 91 GLY 91 A SER 92 n 92 SER 92 A LYS 93 n 93 LYS 93 A PRO 94 n 94 PRO 94 A VAL 95 n 95 VAL 95 A VAL 96 n 96 VAL 96 A LEU 97 n 97 LEU 97 A ARG 98 n 98 ARG 98 A SER 99 n 99 SER 99 A THR 100 n 100 THR 100 A VAL 101 n 101 VAL 101 A PRO 102 n 102 PRO 102 A ILE 103 n 103 ILE 103 A ASN 104 n 104 ASN 104 A THR 105 n 105 THR 105 A ASN 106 n 106 ASN 106 A HIS 107 n 107 HIS 107 A TRP 108 n 108 TRP 108 A THR 109 n 109 THR 109 A HIS 110 n 110 HIS 110 A ILE 111 n 111 ILE 111 A LYS 112 n 112 LYS 112 A ALA 113 n 113 ALA 113 A TYR 114 n 114 TYR 114 A ARG 115 n 115 ARG 115 A VAL 116 n 116 VAL 116 A GLN 117 n 117 GLN 117 A ARG 118 n 118 ARG 118 A GLU 119 n 119 GLU 119 A GLY 120 n 120 GLY 120 A SER 121 n 121 SER 121 A LEU 122 n 122 LEU 122 A GLN 123 n 123 GLN 123 A VAL 124 n 124 VAL 124 A GLY 125 n 125 GLY 125 A ASN 126 n 126 ASN 126 A GLU 127 n 127 GLU 127 A ALA 128 n 128 ALA 128 A PRO 129 n 129 PRO 129 A ILE 130 n 130 ILE 130 A THR 131 n 131 THR 131 A GLY 132 n 132 GLY 132 A SER 133 n 133 SER 133 A SER 134 n 134 SER 134 A PRO 135 n 135 PRO 135 A LEU 136 n 136 LEU 136 A GLY 137 n 137 GLY 137 A ALA 138 n 138 ALA 138 A THR 139 n 139 THR 139 A GLN 140 n 140 GLN 140 A LEU 141 n 141 LEU 141 A ASP 142 n 142 ASP 142 A THR 143 n 143 THR 143 A ASP 144 n 144 ASP 144 A GLY 145 n 145 GLY 145 A ALA 146 n 146 ALA 146 A LEU 147 n 147 LEU 147 A TRP 148 n 148 TRP 148 A LEU 149 n 149 LEU 149 A GLY 150 n 150 GLY 150 A GLY 151 n 151 GLY 151 A MET 152 n 152 MET 152 A GLU 153 n 153 GLU 153 A ARG 154 n 154 ARG 154 A LEU 155 n 155 LEU 155 A SER 156 n 156 SER 156 A VAL 157 n 157 VAL 157 A ALA 158 n 158 ALA 158 A HIS 159 n 159 HIS 159 A LYS 160 n 160 LYS 160 A LEU 161 n 161 LEU 161 A PRO 162 n 162 PRO 162 A LYS 163 n 163 LYS 163 A ALA 164 n 164 ALA 164 A TYR 165 n 165 TYR 165 A SER 166 n 166 SER 166 A THR 167 n 167 THR 167 A GLY 168 n 168 GLY 168 A PHE 169 n 169 PHE 169 A ILE 170 n 170 ILE 170 A GLY 171 n 171 GLY 171 A CYS 172 n 172 CYS 172 A ILE 173 n 173 ILE 173 A ARG 174 n 174 ARG 174 A ASP 175 n 175 ASP 175 A VAL 176 n 176 VAL 176 A ILE 177 n 177 ILE 177 A VAL 178 n 178 VAL 178 A ASP 179 n 179 ASP 179 A ARG 180 n 180 ARG 180 A GLN 181 n 181 GLN 181 A GLU 182 n 182 GLU 182 A LEU 183 n 183 LEU 183 A HIS 184 n 184 HIS 184 A LEU 185 n 185 LEU 185 A VAL 186 n 186 VAL 186 A GLU 187 n 187 GLU 187 A ASP 188 n 188 ASP 188 A ALA 189 n 189 ALA 189 A LEU 190 n 190 LEU 190 A ASN 191 n 191 ASN 191 A ASN 192 n 192 ASN 192 A PRO 193 n 193 PRO 193 A THR 194 n 194 THR 194 A ILE 195 n 195 ILE 195 A LEU 196 n 196 LEU 196 A HIS 197 n 197 HIS 197 A CYS 198 n 198 CYS 198 A SER 199 n 199 SER 199 A n 200 200 A n 201 201 A n 1 1 B n 2 2 B n 3 3 B n 4 4 B n 5 5 B n 6 6 B n 7 7 B n 8 8 B n 9 9 B n 10 10 B ASP 11 n 11 ASP 11 B ALA 12 n 12 ALA 12 B GLU 13 n 13 GLU 13 B ALA 14 n 14 ALA 14 B ILE 15 n 15 ILE 15 B ALA 16 n 16 ALA 16 B PHE 17 n 17 PHE 17 B ASP 18 n 18 ASP 18 B GLY 19 n 19 GLY 19 B ARG 20 n 20 ARG 20 B THR 21 n 21 THR 21 B TYR 22 n 22 TYR 22 B MET 23 n 23 MET 23 B GLU 24 n 24 GLU 24 B TYR 25 n 25 TYR 25 B HIS 26 n 26 HIS 26 B ASN 27 n 27 ASN 27 B ALA 28 n 28 ALA 28 B VAL 29 n 29 VAL 29 B THR 30 n 30 THR 30 B LYS 31 n 31 LYS 31 B SER 32 n 32 SER 32 B HIS 33 n 33 HIS 33 B LEU 34 n 34 LEU 34 B n 35 35 B n 36 36 B n 37 37 B n 38 38 B PRO 39 n 39 PRO 39 B ALA 40 n 40 ALA 40 B GLU 41 n 41 GLU 41 B LYS 42 n 42 LYS 42 B ALA 43 n 43 ALA 43 B LEU 44 n 44 LEU 44 B GLN 45 n 45 GLN 45 B SER 46 n 46 SER 46 B ASN 47 n 47 ASN 47 B HIS 48 n 48 HIS 48 B PHE 49 n 49 PHE 49 B GLU 50 n 50 GLU 50 B LEU 51 n 51 LEU 51 B SER 52 n 52 SER 52 B ILE 53 n 53 ILE 53 B LYS 54 n 54 LYS 54 B THR 55 n 55 THR 55 B GLU 56 n 56 GLU 56 B ALA 57 n 57 ALA 57 B THR 58 n 58 THR 58 B GLN 59 n 59 GLN 59 B GLY 60 n 60 GLY 60 B LEU 61 n 61 LEU 61 B ILE 62 n 62 ILE 62 B LEU 63 n 63 LEU 63 B TRP 64 n 64 TRP 64 B SER 65 n 65 SER 65 B GLY 66 n 66 GLY 66 B LYS 67 n 67 LYS 67 B GLY 68 n 68 GLY 68 B LEU 69 n 69 LEU 69 B GLU 70 n 70 GLU 70 B ARG 71 n 71 ARG 71 B SER 72 n 72 SER 72 B ASP 73 n 73 ASP 73 B TYR 74 n 74 TYR 74 B ILE 75 n 75 ILE 75 B ALA 76 n 76 ALA 76 B LEU 77 n 77 LEU 77 B ALA 78 n 78 ALA 78 B ILE 79 n 79 ILE 79 B VAL 80 n 80 VAL 80 B ASP 81 n 81 ASP 81 B GLY 82 n 82 GLY 82 B PHE 83 n 83 PHE 83 B VAL 84 n 84 VAL 84 B GLN 85 n 85 GLN 85 B MET 86 n 86 MET 86 B MET 87 n 87 MET 87 B TYR 88 n 88 TYR 88 B ASP 89 n 89 ASP 89 B LEU 90 n 90 LEU 90 B GLY 91 n 91 GLY 91 B SER 92 n 92 SER 92 B LYS 93 n 93 LYS 93 B PRO 94 n 94 PRO 94 B VAL 95 n 95 VAL 95 B VAL 96 n 96 VAL 96 B LEU 97 n 97 LEU 97 B ARG 98 n 98 ARG 98 B SER 99 n 99 SER 99 B THR 100 n 100 THR 100 B VAL 101 n 101 VAL 101 B PRO 102 n 102 PRO 102 B ILE 103 n 103 ILE 103 B ASN 104 n 104 ASN 104 B THR 105 n 105 THR 105 B ASN 106 n 106 ASN 106 B HIS 107 n 107 HIS 107 B TRP 108 n 108 TRP 108 B THR 109 n 109 THR 109 B HIS 110 n 110 HIS 110 B ILE 111 n 111 ILE 111 B LYS 112 n 112 LYS 112 B ALA 113 n 113 ALA 113 B TYR 114 n 114 TYR 114 B ARG 115 n 115 ARG 115 B VAL 116 n 116 VAL 116 B GLN 117 n 117 GLN 117 B ARG 118 n 118 ARG 118 B GLU 119 n 119 GLU 119 B GLY 120 n 120 GLY 120 B SER 121 n 121 SER 121 B LEU 122 n 122 LEU 122 B GLN 123 n 123 GLN 123 B VAL 124 n 124 VAL 124 B GLY 125 n 125 GLY 125 B ASN 126 n 126 ASN 126 B GLU 127 n 127 GLU 127 B ALA 128 n 128 ALA 128 B PRO 129 n 129 PRO 129 B ILE 130 n 130 ILE 130 B THR 131 n 131 THR 131 B GLY 132 n 132 GLY 132 B SER 133 n 133 SER 133 B SER 134 n 134 SER 134 B PRO 135 n 135 PRO 135 B LEU 136 n 136 LEU 136 B GLY 137 n 137 GLY 137 B ALA 138 n 138 ALA 138 B THR 139 n 139 THR 139 B GLN 140 n 140 GLN 140 B LEU 141 n 141 LEU 141 B ASP 142 n 142 ASP 142 B THR 143 n 143 THR 143 B ASP 144 n 144 ASP 144 B GLY 145 n 145 GLY 145 B ALA 146 n 146 ALA 146 B LEU 147 n 147 LEU 147 B TRP 148 n 148 TRP 148 B LEU 149 n 149 LEU 149 B GLY 150 n 150 GLY 150 B GLY 151 n 151 GLY 151 B MET 152 n 152 MET 152 B GLU 153 n 153 GLU 153 B ARG 154 n 154 ARG 154 B LEU 155 n 155 LEU 155 B SER 156 n 156 SER 156 B VAL 157 n 157 VAL 157 B ALA 158 n 158 ALA 158 B HIS 159 n 159 HIS 159 B LYS 160 n 160 LYS 160 B LEU 161 n 161 LEU 161 B PRO 162 n 162 PRO 162 B LYS 163 n 163 LYS 163 B ALA 164 n 164 ALA 164 B TYR 165 n 165 TYR 165 B SER 166 n 166 SER 166 B THR 167 n 167 THR 167 B GLY 168 n 168 GLY 168 B PHE 169 n 169 PHE 169 B ILE 170 n 170 ILE 170 B GLY 171 n 171 GLY 171 B CYS 172 n 172 CYS 172 B ILE 173 n 173 ILE 173 B ARG 174 n 174 ARG 174 B ASP 175 n 175 ASP 175 B VAL 176 n 176 VAL 176 B ILE 177 n 177 ILE 177 B VAL 178 n 178 VAL 178 B ASP 179 n 179 ASP 179 B ARG 180 n 180 ARG 180 B GLN 181 n 181 GLN 181 B GLU 182 n 182 GLU 182 B LEU 183 n 183 LEU 183 B HIS 184 n 184 HIS 184 B LEU 185 n 185 LEU 185 B VAL 186 n 186 VAL 186 B GLU 187 n 187 GLU 187 B ASP 188 n 188 ASP 188 B ALA 189 n 189 ALA 189 B LEU 190 n 190 LEU 190 B ASN 191 n 191 ASN 191 B ASN 192 n 192 ASN 192 B PRO 193 n 193 PRO 193 B THR 194 n 194 THR 194 B ILE 195 n 195 ILE 195 B LEU 196 n 196 LEU 196 B HIS 197 n 197 HIS 197 B CYS 198 n 198 CYS 198 B SER 199 n 199 SER 199 B ALA 200 n 200 ALA 200 B LYS 201 n 201 LYS 201 B 1.0754 -0.1796 -0.2299 0.4367 -1.2178 2.1634 0.0201 -0.0920 0.0614 -0.1765 0.0446 0.0360 0.2115 0.0107 -0.0646 0.0251 -0.0615 0.1138 0.3917 -0.0403 0.7505 refined 18.4420 8.0650 2.1660 X-RAY DIFFRACTION 1.4322 -0.6450 -0.6150 0.3637 0.6605 1.8810 0.0238 0.1326 0.0362 0.0341 -0.0598 -0.0305 0.2263 -0.1356 0.0360 0.0362 -0.0398 0.1457 0.3332 -0.0250 0.7050 refined 2.7780 17.5130 37.4850 X-RAY DIFFRACTION A 12 A 12 A 30 A 30 X-RAY DIFFRACTION 1 A 45 A 45 A 204 C 3 X-RAY DIFFRACTION 1 B 12 B 12 B 30 B 30 X-RAY DIFFRACTION 2 B 45 B 45 B 204 D 3 X-RAY DIFFRACTION 2 author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N PHE 17 A N PHE 17 A O GLY 171 A O GLY 171 A O ILE 177 A O ILE 177 A N GLU 50 A N GLU 50 A N PHE 49 A N PHE 49 A O ALA 113 A O ALA 113 A N VAL 116 A N VAL 116 A O GLU 119 A O GLU 119 A N LEU 122 A N LEU 122 A O ILE 130 A O ILE 130 A N PHE 17 A N PHE 17 A O GLY 171 A O GLY 171 A N VAL 178 A N VAL 178 A O GLN 181 A O GLN 181 A N MET 23 A N MET 23 A O LEU 149 A O LEU 149 A O TRP 148 A O TRP 148 A N TRP 64 A N TRP 64 A N GLY 60 A N GLY 60 A O ILE 79 A O ILE 79 A N ALA 78 A N ALA 78 A O GLN 85 A O GLN 85 A N MET 86 A N MET 86 A O LEU 97 A O LEU 97 A N LEU 44 A N LEU 44 A O LEU 141 A O LEU 141 B O ILE 130 B O ILE 130 B N LEU 122 B N LEU 122 B O SER 121 B O SER 121 B N TYR 114 B N TYR 114 B O ALA 113 B O ALA 113 B N PHE 49 B N PHE 49 B N GLU 50 B N GLU 50 B O ILE 177 B O ILE 177 B N VAL 178 B N VAL 178 B O GLN 181 B O GLN 181 B O ILE 130 B O ILE 130 B N LEU 122 B N LEU 122 B O SER 121 B O SER 121 B N TYR 114 B N TYR 114 B O ALA 113 B O ALA 113 B N PHE 49 B N PHE 49 B N GLU 50 B N GLU 50 B O ILE 177 B O ILE 177 B O GLY 171 B O GLY 171 B N PHE 17 B N PHE 17 B N ALA 14 B N ALA 14 B O CYS 198 B O CYS 198 B N TYR 25 B N TYR 25 B O LEU 147 B O LEU 147 B O TRP 148 B O TRP 148 B N TRP 64 B N TRP 64 B N GLY 60 B N GLY 60 B O ILE 79 B O ILE 79 B N ALA 76 B N ALA 76 B O MET 87 B O MET 87 B N MET 86 B N MET 86 B O LEU 97 B O LEU 97 B N LEU 44 B N LEU 44 B O LEU 141 B O LEU 141 1 B CD PRO 39 B CD PRO 39 1 Y 1 A GLU 1 A GLU 1 1 Y 1 A LYS 2 A LYS 2 1 Y 1 A VAL 3 A VAL 3 1 Y 1 A ILE 4 A ILE 4 1 Y 1 A ILE 5 A ILE 5 1 Y 1 A GLU 6 A GLU 6 1 Y 1 A LYS 7 A LYS 7 1 Y 1 A ALA 8 A ALA 8 1 Y 1 A ALA 9 A ALA 9 1 Y 1 A SER 35 A SER 35 1 Y 1 A ASN 36 A ASN 36 1 Y 1 A GLU 37 A GLU 37 1 Y 1 A ILE 38 A ILE 38 1 Y 1 A PRO 39 A PRO 39 1 Y 1 A ALA 200 A ALA 200 1 Y 1 A LYS 201 A LYS 201 1 Y 1 B GLU 1 B GLU 1 1 Y 1 B LYS 2 B LYS 2 1 Y 1 B VAL 3 B VAL 3 1 Y 1 B ILE 4 B ILE 4 1 Y 1 B ILE 5 B ILE 5 1 Y 1 B GLU 6 B GLU 6 1 Y 1 B LYS 7 B LYS 7 1 Y 1 B ALA 8 B ALA 8 1 Y 1 B ALA 9 B ALA 9 1 Y 1 B GLY 10 B GLY 10 1 Y 1 B SER 35 B SER 35 1 Y 1 B ASN 36 B ASN 36 1 Y 1 B GLU 37 B GLU 37 1 Y 1 B ILE 38 B ILE 38 1 Y 1 B B O O HOH HOH 235 236 1.99 1 5.50 0.90 118.30 123.80 A A A CB CG OD2 ASP ASP ASP 81 81 81 N 1 5.42 0.90 118.30 123.72 A A A CB CG OD2 ASP ASP ASP 175 175 175 N 1 5.94 0.90 118.30 124.24 B B B CB CG OD2 ASP ASP ASP 11 11 11 N 1 8.28 1.20 103.30 111.58 B B B N CA CB PRO PRO PRO 39 39 39 N 1 6.12 0.90 118.30 124.42 B B B CB CG OD2 ASP ASP ASP 81 81 81 N 1 5.53 0.90 118.30 123.83 B B B CB CG OD2 ASP ASP ASP 179 179 179 N 1 A ASP 11 79.17 -118.60 1 A ARG 20 -145.05 14.33 1 A HIS 26 -97.36 -62.22 1 A ASN 27 61.28 108.29 1 A ALA 28 95.48 77.79 1 A VAL 29 173.01 132.78 1 A THR 30 -40.00 122.50 1 A LYS 31 -144.06 -15.81 1 A SER 32 167.48 -85.25 1 A HIS 33 -86.85 -122.36 1 A GLU 41 -48.29 177.19 1 A ALA 43 -115.36 77.84 1 A LYS 93 80.09 153.26 1 A TRP 108 -31.68 129.52 1 A GLN 117 63.83 -95.99 1 A GLU 127 -45.66 169.30 1 A ALA 138 -49.55 161.24 1 A THR 139 -144.62 -6.92 1 A GLU 153 -54.26 -85.82 1 A ARG 154 -55.83 103.41 1 A SER 156 -25.74 -53.83 1 A VAL 157 -67.15 44.86 1 A LYS 163 -38.64 -30.81 1 A VAL 186 -64.02 -74.83 1 A ASN 192 33.58 68.92 1 A HIS 197 -64.17 -178.08 1 B ALA 12 -20.76 100.97 1 B ASN 27 15.00 96.51 1 B ALA 28 100.22 98.85 1 B VAL 29 156.43 128.82 1 B THR 30 -35.70 141.39 1 B LYS 31 -155.78 -33.74 1 B SER 32 173.52 -44.31 1 B HIS 33 -132.59 -139.10 1 B ALA 40 -83.95 -83.70 1 B GLU 70 -33.24 -32.63 1 B ASP 81 42.01 23.04 1 B SER 92 -144.80 37.28 1 B LYS 93 81.83 144.16 1 B ASN 106 31.58 18.98 1 B GLN 117 51.34 -116.87 1 B GLU 127 -65.19 -174.32 1 B ALA 138 -39.20 133.20 1 B GLU 153 -28.49 -49.85 1 B ARG 154 -55.25 25.20 1 B SER 156 -147.89 35.50 1 B LEU 185 -29.23 -57.86 1 B VAL 186 -75.15 -74.04 22.696 -0.41 0.00 -3.60 0.95 0.00 -4.88 0.897 0.898 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.27105 0.2384 0.2399 2.80 20.00 394 8056 4.7 100.00 29.275 0.593 RANDOM 1 THROUGHOUT 0.00 MOLECULAR REPLACEMENT 0.467 0.80 0.80 1.40 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 2.80 20.00 75 2948 0 0 2873 0.016 0.021 2932 0.001 0.020 2652 1.605 1.946 3975 0.808 3.000 6167 2.383 3.000 368 16.994 15.000 512 0.084 0.200 453 0.005 0.020 3264 0.003 0.020 570 0.277 0.300 687 0.261 0.300 2803 0.158 0.500 203 0.165 0.500 7 0.258 0.300 58 0.308 0.300 134 0.318 0.500 14 0.756 1.500 1839 1.386 2.000 2948 1.600 3.000 1093 2.724 4.500 1027 0.361 0.335 2.871 37 574 20 2.78 30.9 1PZ9 8472 0.00 0.102 1 13.5 3.2 99.2 refinement REFMAC 5.0 data reduction MOSFLM data scaling CCP4 (SCALA) phasing AMoRE Agrin Modulation of agrin function by alternative splicing and Ca2+ binding 1 N N 1 N N 2 N N 2 N N A PRO 162 A PRO 162 HELX_P A THR 167 A THR 167 1 1 6 A HIS 184 A HIS 184 HELX_P A ALA 189 A ALA 189 1 2 6 B PRO 162 B PRO 162 HELX_P B THR 167 B THR 167 5 3 6 B HIS 184 B HIS 184 HELX_P B ALA 189 B ALA 189 1 4 6 disulf 2.043 A CYS 172 A SG CYS 172 1_555 A CYS 198 A SG CYS 198 1_555 disulf 2.059 B CYS 172 B SG CYS 172 1_555 B CYS 198 B SG CYS 198 1_555 STRUCTURAL PROTEIN Agrin, STRUCTURAL PROTEIN AGRN_CHICK UNP 1 1752 P31696 EKVIIEKAAGDAEAIAFDGRTYMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWSGKGLERSDYIAL AIVDGFVQMMYDLGSKPVVLRSTVPINTNHWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQLDTDGALWLGGMERLSV AHKLPKAYSTGFIGCIRDVIVDRQELHLVEDALNNPTILHCSAK 1752 1955 1PZ9 1 201 P31696 A 1 1 201 1752 1955 1PZ9 1 201 P31696 B 1 1 201 1 PRO SEE REMARK 999 HIS 33 1PZ9 A P31696 UNP 1784 33 1 ASP SEE REMARK 999 LEU 34 1PZ9 A P31696 UNP 1785 34 1 ALA SEE REMARK 999 SER 35 1PZ9 A P31696 UNP 1786 35 1 LEU SEE REMARK 999 ASN 36 1PZ9 A P31696 UNP 1787 36 1 ASP SEE REMARK 999 GLU 37 1PZ9 A P31696 UNP 1788 37 1 TYR SEE REMARK 999 ILE 38 1PZ9 A P31696 UNP 1789 38 1 PRO SEE REMARK 999 42 1PZ9 A P31696 UNP 1793 42 1 SER SEE REMARK 999 43 1PZ9 A P31696 UNP 1794 43 1 GLU SEE REMARK 999 44 1PZ9 A P31696 UNP 1795 44 2 PRO SEE REMARK 999 HIS 33 1PZ9 B P31696 UNP 1784 33 2 ASP SEE REMARK 999 LEU 34 1PZ9 B P31696 UNP 1785 34 2 ALA SEE REMARK 999 SER 35 1PZ9 B P31696 UNP 1786 35 2 LEU SEE REMARK 999 ASN 36 1PZ9 B P31696 UNP 1787 36 2 ASP SEE REMARK 999 GLU 37 1PZ9 B P31696 UNP 1788 37 2 TYR SEE REMARK 999 ILE 38 1PZ9 B P31696 UNP 1789 38 2 PRO SEE REMARK 999 42 1PZ9 B P31696 UNP 1793 42 2 SER SEE REMARK 999 43 1PZ9 B P31696 UNP 1794 43 2 GLU SEE REMARK 999 44 1PZ9 B P31696 UNP 1795 44 6 3 6 2 6 7 6 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ILE 15 A ILE 15 A ASP 18 A ASP 18 A ILE 170 A ILE 170 A VAL 178 A VAL 178 A SER 46 A SER 46 A LYS 54 A LYS 54 A THR 109 A THR 109 A VAL 116 A VAL 116 A GLU 119 A GLU 119 A VAL 124 A VAL 124 A ILE 130 A ILE 130 A SER 133 A SER 133 A ILE 15 A ILE 15 A ASP 18 A ASP 18 A ILE 170 A ILE 170 A VAL 178 A VAL 178 A GLN 181 A GLN 181 A GLU 182 A GLU 182 A MET 23 A MET 23 A TYR 25 A TYR 25 A LEU 147 A LEU 147 A LEU 149 A LEU 149 A GLN 59 A GLN 59 A GLY 66 A GLY 66 A TYR 74 A TYR 74 A VAL 80 A VAL 80 A PHE 83 A PHE 83 A ASP 89 A ASP 89 A VAL 95 A VAL 95 A ARG 98 A ARG 98 A ALA 43 A ALA 43 A LEU 44 A LEU 44 A LEU 141 A LEU 141 A ASP 142 A ASP 142 B ILE 130 B ILE 130 B SER 133 B SER 133 B GLU 119 B GLU 119 B LEU 122 B LEU 122 B THR 109 B THR 109 B VAL 116 B VAL 116 B SER 46 B SER 46 B LYS 54 B LYS 54 B ILE 170 B ILE 170 B VAL 178 B VAL 178 B GLN 181 B GLN 181 B GLU 182 B GLU 182 B ILE 130 B ILE 130 B SER 133 B SER 133 B GLU 119 B GLU 119 B LEU 122 B LEU 122 B THR 109 B THR 109 B VAL 116 B VAL 116 B SER 46 B SER 46 B LYS 54 B LYS 54 B ILE 170 B ILE 170 B VAL 178 B VAL 178 B ALA 14 B ALA 14 B ASP 18 B ASP 18 B HIS 197 B HIS 197 B CYS 198 B CYS 198 B MET 23 B MET 23 B TYR 25 B TYR 25 B LEU 147 B LEU 147 B LEU 149 B LEU 149 B GLY 60 B GLY 60 B SER 65 B SER 65 B TYR 74 B TYR 74 B VAL 80 B VAL 80 B PHE 83 B PHE 83 B ASP 89 B ASP 89 B VAL 95 B VAL 95 B ARG 98 B ARG 98 B LYS 42 B LYS 42 B LEU 44 B LEU 44 B LEU 141 B LEU 141 B THR 143 B THR 143 5 C 1 2 1