1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Broadhurst, R.W. Nietlispach, D. Wheatcroft, M.P. Leadlay, P.F. Weissman, K.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Chem.Biol. CBOLE2 2050 1074-5521 10 723 731 10.1016/S1074-5521(03)00156-X 12954331 The structure of docking domains in modular polyketide synthases. 2003 10.2210/pdb1pzq/pdb pdb_00001pzq 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 6428.874 Erythronolide synthase 2.3.1.94 C-terminal fragment L1G, F2S 2 man polymer Insertion of GS at N-terminus ORF 2, 6-deoxyerythronolide B synthase II, DEBS 2 no no GSAASPAVDIGDRLDELEKALEALSAEDGHDDVGQRLESLLRRWNSRRADAPSTSAISED GSAASPAVDIGDRLDELEKALEALSAEDGHDDVGQRLESLLRRWNSRRADAPSTSAISED A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Saccharopolyspora Escherichia sample ERYA 1836 Saccharopolyspora erythraea 562 Escherichia coli BL21-CODONPLUS PLASMID pGEX4T-3 database_2 pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2004-02-24 1 1 2008-04-29 1 2 2011-07-13 1 3 2022-03-02 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details Structure of fused docking domains from the erythromycin polyketide synthase (DEBS), a model for the interaction between DEBS 2 and DEBS 3: the B domain RCSB Y RCSB 2003-07-14 REL REL The structure was determined using triple-resonance NMR spectroscopy. Intermolecular contacts were obtained from an X-filtered NOESY experiment on a mixed-labeled sample. structures with the lowest energy 40 8 3D_15N-separated_NOESY 3D_13C-separated_NOESY 3D_13C_15N_X-filtered_13C-separated_NOESY 100mM phosphate buffer NA 6.5 ambient 298 K the structures are based on a total of 1811 restraints: 1709 NOE-derived distance constraints, 60 dihedral angle restraints, 42 distance restraints from hydrogen bonds. simulated annealing 1 closest to the average 1mM DOCK23 U-15N,13C: 100mM phosphate buffer NA: trace amounts of sodium azide, AEBSF protease inhibitor cocktail and TSP 1H shift reference: 90% H2O, 10% D2O 90% H2O/10% D2O 1mM DOCK23 (50% U-15N,13C: 50% unlabeled): 100mM phosphate buffer NA: trace amounts of sodium azide, AEBSF protease inhibitor cocktail and TSP 1H shift reference: 90% H2O, 10% D2O 90% H2O/10% D2O Kraulis data analysis ANSIG 3.3 Brunger structure solution CNS 1.0 Brunger refinement CNS 1.0 500 Bruker DRX 800 Bruker DRX GLY 1 n 1 GLY 1 A SER 2 n 2 SER 2 A ALA 3 n 3 ALA 3 A ALA 4 n 4 ALA 4 A SER 5 n 5 SER 5 A PRO 6 n 6 PRO 6 A ALA 7 n 7 ALA 7 A VAL 8 n 8 VAL 8 A ASP 9 n 9 ASP 9 A ILE 10 n 10 ILE 10 A GLY 11 n 11 GLY 11 A ASP 12 n 12 ASP 12 A ARG 13 n 13 ARG 13 A LEU 14 n 14 LEU 14 A ASP 15 n 15 ASP 15 A GLU 16 n 16 GLU 16 A LEU 17 n 17 LEU 17 A GLU 18 n 18 GLU 18 A LYS 19 n 19 LYS 19 A ALA 20 n 20 ALA 20 A LEU 21 n 21 LEU 21 A GLU 22 n 22 GLU 22 A ALA 23 n 23 ALA 23 A LEU 24 n 24 LEU 24 A SER 25 n 25 SER 25 A ALA 26 n 26 ALA 26 A GLU 27 n 27 GLU 27 A ASP 28 n 28 ASP 28 A GLY 29 n 29 GLY 29 A HIS 30 n 30 HIS 30 A ASP 31 n 31 ASP 31 A ASP 32 n 32 ASP 32 A VAL 33 n 33 VAL 33 A GLY 34 n 34 GLY 34 A GLN 35 n 35 GLN 35 A ARG 36 n 36 ARG 36 A LEU 37 n 37 LEU 37 A GLU 38 n 38 GLU 38 A SER 39 n 39 SER 39 A LEU 40 n 40 LEU 40 A LEU 41 n 41 LEU 41 A ARG 42 n 42 ARG 42 A ARG 43 n 43 ARG 43 A TRP 44 n 44 TRP 44 A ASN 45 n 45 ASN 45 A SER 46 n 46 SER 46 A ARG 47 n 47 ARG 47 A ARG 48 n 48 ARG 48 A ALA 49 n 49 ALA 49 A ASP 50 n 50 ASP 50 A ALA 51 n 51 ALA 51 A PRO 52 n 52 PRO 52 A SER 53 n 53 SER 53 A THR 54 n 54 THR 54 A SER 55 n 55 SER 55 A ALA 56 n 56 ALA 56 A ILE 57 n 57 ILE 57 A SER 58 n 58 SER 58 A GLU 59 n 59 GLU 59 A ASP 60 n 60 ASP 60 A GLY 1 n 1 GLY 1 B SER 2 n 2 SER 2 B ALA 3 n 3 ALA 3 B ALA 4 n 4 ALA 4 B SER 5 n 5 SER 5 B PRO 6 n 6 PRO 6 B ALA 7 n 7 ALA 7 B VAL 8 n 8 VAL 8 B ASP 9 n 9 ASP 9 B ILE 10 n 10 ILE 10 B GLY 11 n 11 GLY 11 B ASP 12 n 12 ASP 12 B ARG 13 n 13 ARG 13 B LEU 14 n 14 LEU 14 B ASP 15 n 15 ASP 15 B GLU 16 n 16 GLU 16 B LEU 17 n 17 LEU 17 B GLU 18 n 18 GLU 18 B LYS 19 n 19 LYS 19 B ALA 20 n 20 ALA 20 B LEU 21 n 21 LEU 21 B GLU 22 n 22 GLU 22 B ALA 23 n 23 ALA 23 B LEU 24 n 24 LEU 24 B SER 25 n 25 SER 25 B ALA 26 n 26 ALA 26 B GLU 27 n 27 GLU 27 B ASP 28 n 28 ASP 28 B GLY 29 n 29 GLY 29 B HIS 30 n 30 HIS 30 B ASP 31 n 31 ASP 31 B ASP 32 n 32 ASP 32 B VAL 33 n 33 VAL 33 B GLY 34 n 34 GLY 34 B GLN 35 n 35 GLN 35 B ARG 36 n 36 ARG 36 B LEU 37 n 37 LEU 37 B GLU 38 n 38 GLU 38 B SER 39 n 39 SER 39 B LEU 40 n 40 LEU 40 B LEU 41 n 41 LEU 41 B ARG 42 n 42 ARG 42 B ARG 43 n 43 ARG 43 B TRP 44 n 44 TRP 44 B ASN 45 n 45 ASN 45 B SER 46 n 46 SER 46 B ARG 47 n 47 ARG 47 B ARG 48 n 48 ARG 48 B ALA 49 n 49 ALA 49 B ASP 50 n 50 ASP 50 B ALA 51 n 51 ALA 51 B PRO 52 n 52 PRO 52 B SER 53 n 53 SER 53 B THR 54 n 54 THR 54 B SER 55 n 55 SER 55 B ALA 56 n 56 ALA 56 B ILE 57 n 57 ILE 57 B SER 58 n 58 SER 58 B GLU 59 n 59 GLU 59 B ASP 60 n 60 ASP 60 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A O H ASP GLY 9 11 1.58 2 A B HA HE LEU ARG 17 13 1.26 3 A A O H LEU ASN 41 45 1.59 4 A B H HB2 ALA ALA 7 20 1.32 4 A A O H ASP GLY 9 11 1.59 4 A A O H LEU ASN 41 45 1.60 5 A A O H LEU ASN 41 45 1.60 6 A A O H LEU ASN 41 45 1.59 6 A A O H ASP GLY 9 11 1.60 7 A A O H ASP GLY 9 11 1.60 8 A B HH11 HB3 ARG ALA 13 20 1.26 8 A A O H ASP GLY 9 11 1.58 1 A ALA 4 -172.99 -139.57 1 A SER 5 64.50 128.19 1 A PRO 6 -71.38 -167.39 1 A ILE 10 55.40 -50.28 1 A SER 25 -47.21 84.18 1 A ASP 28 -162.30 52.21 1 A HIS 30 -75.45 44.60 1 A ASP 50 -67.25 84.19 1 A THR 54 -165.60 -41.15 1 A SER 55 -163.10 -49.42 1 B ALA 4 -174.01 -139.78 1 B SER 5 63.59 127.02 1 B PRO 6 -68.70 -159.01 1 B ASP 9 76.94 -12.87 1 B ILE 10 69.58 -40.82 1 B SER 25 -54.75 86.60 1 B ASP 28 -159.09 60.83 1 B HIS 30 -74.46 37.65 1 B ASP 50 -62.16 93.47 1 B ALA 51 -172.32 134.16 1 B THR 54 -164.87 -41.27 1 B SER 55 -162.90 -49.54 2 A SER 2 -79.05 43.94 2 A SER 5 -174.80 57.35 2 A ILE 10 45.93 -59.61 2 A SER 25 -46.54 84.06 2 A ASP 28 -162.60 52.08 2 A HIS 30 -75.18 44.96 2 A ALA 51 -177.68 132.76 2 A SER 53 -177.13 -140.24 2 A THR 54 -175.55 136.32 2 A ALA 56 -176.35 -138.28 2 A ILE 57 -174.14 136.27 2 A SER 58 -173.39 -44.92 2 A GLU 59 -172.45 135.79 2 B SER 2 -78.89 43.10 2 B SER 5 -171.14 53.85 2 B ASP 9 69.19 -0.88 2 B ILE 10 60.95 -58.36 2 B SER 25 -53.10 86.47 2 B ASP 28 -162.49 60.30 2 B HIS 30 -75.40 41.07 2 B ALA 51 -179.40 130.74 2 B SER 53 -176.48 -140.31 2 B THR 54 -175.40 136.81 2 B ALA 56 -176.60 -138.84 2 B ILE 57 -175.54 136.59 2 B SER 58 -172.92 -43.16 2 B GLU 59 -172.36 136.90 3 A SER 2 64.56 134.96 3 A ALA 3 -173.47 -139.24 3 A PRO 6 -65.93 -166.70 3 A ILE 10 58.19 -44.55 3 A SER 25 -47.27 85.80 3 A ASP 28 -160.79 51.27 3 A HIS 30 -75.24 43.90 3 A ALA 51 -168.16 62.26 3 A PRO 52 -67.59 -135.24 3 A SER 53 -168.83 51.92 3 A THR 54 -167.60 -39.60 3 A SER 58 -69.99 -138.68 3 A GLU 59 -150.67 44.24 3 B SER 2 64.68 133.43 3 B ALA 3 -172.97 -139.20 3 B PRO 6 -64.74 -159.62 3 B ASP 9 78.12 -9.29 3 B ILE 10 70.50 -41.06 3 B SER 25 -49.41 82.08 3 B ASP 28 -154.39 56.46 3 B HIS 30 -74.46 35.63 3 B ALA 51 -172.32 58.97 3 B PRO 52 -65.36 -134.81 3 B SER 53 -168.88 51.70 3 B THR 54 -167.84 -39.70 3 B SER 58 -68.82 -137.83 3 B GLU 59 -151.68 44.66 4 A SER 2 -69.19 -141.18 4 A ALA 3 -173.23 134.41 4 A ALA 4 -80.05 44.70 4 A ILE 10 52.29 -52.58 4 A SER 25 -46.84 79.51 4 A ALA 26 45.05 28.11 4 A ASP 28 -154.55 50.08 4 A HIS 30 -76.84 43.82 4 A ASP 50 -82.12 47.92 4 A SER 55 -170.90 44.17 4 A ALA 56 -79.44 44.57 4 A SER 58 -69.23 -137.30 4 B SER 2 -68.66 -139.30 4 B ALA 3 -174.79 135.17 4 B ALA 4 -77.63 39.38 4 B ASP 9 77.60 -4.80 4 B ILE 10 67.03 -48.28 4 B SER 25 -51.21 79.62 4 B ASP 28 -147.50 54.99 4 B HIS 30 -74.93 35.85 4 B ASP 50 -79.84 47.25 4 B SER 53 -75.96 49.67 4 B SER 55 -171.39 44.19 4 B ALA 56 -79.68 45.06 4 B SER 58 -68.67 -138.13 5 A ALA 3 57.90 -138.42 5 A ALA 4 -172.16 -140.34 5 A SER 5 -175.62 56.47 5 A ASP 9 80.31 -1.62 5 A ILE 10 59.11 -42.24 5 A SER 25 -45.98 85.50 5 A ASP 28 -162.91 51.74 5 A HIS 30 -75.10 46.28 5 A ASP 50 -67.30 82.85 5 A ALA 56 -170.20 -45.48 5 A ILE 57 -175.55 135.27 5 B ALA 3 57.87 -137.84 5 B ALA 4 -173.14 -138.74 5 B SER 5 -172.34 57.12 5 B ASP 9 83.40 -12.38 5 B ILE 10 71.36 -39.33 5 B SER 25 -48.66 82.39 5 B ASP 28 -157.87 60.24 5 B HIS 30 -74.44 39.53 5 B ASP 50 -62.68 86.87 5 B ALA 56 -170.35 -45.95 5 B ILE 57 -175.68 135.52 6 A SER 2 -171.86 46.79 6 A ALA 4 -79.66 47.37 6 A ILE 10 56.18 -45.88 6 A SER 25 -47.12 86.27 6 A ASP 28 -161.80 50.98 6 A HIS 30 -74.95 45.14 6 A ASP 50 -78.60 46.28 6 A ALA 51 -171.76 133.29 6 A PRO 52 -77.23 44.11 6 A SER 55 -171.30 137.38 6 A SER 58 -171.68 45.27 6 B SER 2 -163.37 44.08 6 B ALA 4 -78.72 43.37 6 B ASP 9 79.39 -7.31 6 B ILE 10 69.09 -46.51 6 B SER 25 -48.39 80.42 6 B ASP 28 -154.35 54.27 6 B HIS 30 -74.69 39.11 6 B ASP 50 -76.81 46.00 6 B ALA 51 -170.69 132.44 6 B PRO 52 -77.03 44.55 6 B SER 55 -171.78 136.93 6 B SER 58 -174.38 43.11 7 A SER 2 -173.89 -44.60 7 A SER 5 -175.47 135.24 7 A ILE 10 55.32 -50.02 7 A SER 25 -46.00 82.53 7 A ALA 26 44.15 29.41 7 A ASP 28 -157.23 50.43 7 A HIS 30 -76.22 45.84 7 A ASP 50 -80.00 48.45 7 A SER 53 56.43 -135.47 7 A THR 54 -163.25 -45.63 7 A SER 55 -174.03 43.58 7 A ALA 56 -79.20 44.97 7 A SER 58 56.86 -138.79 7 B SER 2 -173.94 -44.12 7 B SER 5 -173.56 131.88 7 B ASP 9 80.02 -5.29 7 B ILE 10 68.31 -41.81 7 B SER 25 -48.70 82.64 7 B ASP 28 -153.61 55.68 7 B HIS 30 -74.97 39.42 7 B ASP 50 -77.93 49.38 7 B SER 53 57.44 -135.44 7 B THR 54 -162.74 -46.10 7 B SER 55 -174.38 43.52 7 B ALA 56 -78.94 44.97 7 B SER 58 56.88 -138.63 8 A ALA 3 -172.92 47.99 8 A SER 5 -172.37 133.03 8 A ILE 10 51.79 -53.99 8 A SER 25 -47.18 81.38 8 A ALA 26 45.01 28.58 8 A ASP 28 -155.40 50.19 8 A HIS 30 -76.69 43.99 8 A ASP 50 -79.78 45.82 8 A ALA 51 -173.05 134.93 8 A THR 54 -163.06 -44.56 8 A SER 55 -173.00 134.32 8 A ALA 56 65.12 134.39 8 A SER 58 -174.28 -45.75 8 B ALA 3 -172.60 46.27 8 B ALA 4 -171.74 136.13 8 B SER 5 -172.68 131.97 8 B PRO 6 -65.46 -162.94 8 B ASP 9 75.67 -9.10 8 B ILE 10 67.93 -41.30 8 B SER 25 -49.73 81.49 8 B ASP 28 -150.60 54.19 8 B HIS 30 -74.99 37.80 8 B ASP 50 -77.63 45.46 8 B ALA 51 -171.77 134.03 8 B THR 54 -163.40 -48.32 8 B ALA 56 63.27 137.01 8 B SER 58 -173.92 -46.34 Structure of fused docking domains from the erythromycin polyketide synthase (DEBS), a model for the interaction between DEBS 2 and DEBS 3: The A domain 1 N N 1 N N A ILE 10 A ILE 10 HELX_P A SER 25 A SER 25 1 1 16 A HIS 30 A HIS 30 HELX_P A ASP 50 A ASP 50 1 2 21 B ILE 10 B ILE 10 HELX_P B SER 25 B SER 25 1 3 16 B HIS 30 B HIS 30 HELX_P B ASP 50 B ASP 50 1 4 21 TRANSFERASE FOUR HELIX BUNDLE, HOMODIMER, TRANSFERASE ERYA2_SACER UNP 1 3488 Q03132 LFAASPAVDIGDRLDELEKALEALSAEDGHDDVGQRLESLLRRWNSRRADAPSTSAISED 3490 3547 1PZQ 3 60 Q03132 A 1 3 60 3490 3547 1PZQ 3 60 Q03132 B 1 3 60 1 cloning artifact GLY 1 1PZQ A Q03132 UNP 1 1 cloning artifact SER 2 1PZQ A Q03132 UNP 2 2 cloning artifact GLY 1 1PZQ B Q03132 UNP 1 2 cloning artifact SER 2 1PZQ B Q03132 UNP 2