1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Broadhurst, R.W. Nietlispach, D. Wheatcroft, M.P. Leadlay, P.F. Weissman, K.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Chem.Biol. CBOLE2 2050 1074-5521 10 723 731 10.1016/S1074-5521(03)00156-X 12954331 The structure of docking domains in modular polyketide synthases. 2003 10.2210/pdb1pzr/pdb pdb_00001pzr 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 C-terminal fragment of DEBS2 fused to N-terminal fragment of DEBS3 6842.579 Erythronolide synthase 2.3.1.94 RESIDUES 61-120 2 man polymer ORF 2, 6-deoxyerythronolide B synthase II, DEBS 2/ORF 3, 6-deoxyerythronolide B synthase III, DEBS 3 no no ASDDELFSMLDQRFGGGEDLLMSGDNGMTEEKLRRYLKRTVTELDSVTARLREVEHRAGE ASDDELFSMLDQRFGGGEDLLMSGDNGMTEEKLRRYLKRTVTELDSVTARLREVEHRAGE A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Saccharopolyspora Escherichia sample ERYA 1836 Saccharopolyspora erythraea 562 Escherichia coli BL21-CODONPLUS PLASMID pGEX4T-3 database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2004-02-24 1 1 2008-04-29 1 2 2011-07-13 1 3 2022-03-02 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name Structure of fused docking domains from the erythromycin polyketide synthase (DEBS), a model for the interaction between DEBS 2 and DEBS 3: The A domain SEQUENCE LEU 81 and MET 82 form a linker between the C-terminal fragment of DEBS2 and the N-terminal fragment of DEBS3 RCSB Y RCSB 2003-07-14 REL REL The structure was determined using triple-resonance NMR spectroscopy. Intermolecular contacts were obtained from an X-filtered NOESY experiment on a mixed-labeled sample. structures with the lowest energy 100 7 3D_15N-separated_NOESY 3D_13C-separated_NOESY 3D_13C_15N_X-filtered_13C-separated_NOESY 100mM phosphate buffer NA 6.5 ambient 298 K the structures are based on a total of 1754 restraints: 1618 NOE-derived distance restraints, 78 dihedral angle restraints, 58 distance restraints from hydrogen bonds. simulated annealing 1 closest to the average 1mM DOCK23 U-15N,13C: 100mM phosphate buffer NA: trace amounts of sodium azide, AEBSF protease inhibitor cocktail and TSP 1H shift reference: 90% H2O, 10% D2O 90% H2O/10% D2O 1mM DOCK23 (50% U-15N,13C: 50% unlabeled): 100mM phosphate buffer NA: trace amounts of sodium azide, AEBSF protease inhibitor cocktail and TSP 1H shift reference: 90% H2O, 10% D2O 90% H2O/10% D2O Boucher processing Azara 1.0 Kraulis data analysis ANSIG 3.3 Brunger structure solution CNS 1.0 Brunger refinement CNS 1.0 500 Bruker DRX 800 Bruker DRX ALA 61 n 1 ALA 61 A SER 62 n 2 SER 62 A ASP 63 n 3 ASP 63 A ASP 64 n 4 ASP 64 A GLU 65 n 5 GLU 65 A LEU 66 n 6 LEU 66 A PHE 67 n 7 PHE 67 A SER 68 n 8 SER 68 A MET 69 n 9 MET 69 A LEU 70 n 10 LEU 70 A ASP 71 n 11 ASP 71 A GLN 72 n 12 GLN 72 A ARG 73 n 13 ARG 73 A PHE 74 n 14 PHE 74 A GLY 75 n 15 GLY 75 A GLY 76 n 16 GLY 76 A GLY 77 n 17 GLY 77 A GLU 78 n 18 GLU 78 A ASP 79 n 19 ASP 79 A LEU 80 n 20 LEU 80 A LEU 81 n 21 LEU 81 A MET 82 n 22 MET 82 A SER 83 n 23 SER 83 A GLY 84 n 24 GLY 84 A ASP 85 n 25 ASP 85 A ASN 86 n 26 ASN 86 A GLY 87 n 27 GLY 87 A MET 88 n 28 MET 88 A THR 89 n 29 THR 89 A GLU 90 n 30 GLU 90 A GLU 91 n 31 GLU 91 A LYS 92 n 32 LYS 92 A LEU 93 n 33 LEU 93 A ARG 94 n 34 ARG 94 A ARG 95 n 35 ARG 95 A TYR 96 n 36 TYR 96 A LEU 97 n 37 LEU 97 A LYS 98 n 38 LYS 98 A ARG 99 n 39 ARG 99 A THR 100 n 40 THR 100 A VAL 101 n 41 VAL 101 A THR 102 n 42 THR 102 A GLU 103 n 43 GLU 103 A LEU 104 n 44 LEU 104 A ASP 105 n 45 ASP 105 A SER 106 n 46 SER 106 A VAL 107 n 47 VAL 107 A THR 108 n 48 THR 108 A ALA 109 n 49 ALA 109 A ARG 110 n 50 ARG 110 A LEU 111 n 51 LEU 111 A ARG 112 n 52 ARG 112 A GLU 113 n 53 GLU 113 A VAL 114 n 54 VAL 114 A GLU 115 n 55 GLU 115 A HIS 116 n 56 HIS 116 A ARG 117 n 57 ARG 117 A ALA 118 n 58 ALA 118 A GLY 119 n 59 GLY 119 A GLU 120 n 60 GLU 120 A ALA 61 n 1 ALA 61 B SER 62 n 2 SER 62 B ASP 63 n 3 ASP 63 B ASP 64 n 4 ASP 64 B GLU 65 n 5 GLU 65 B LEU 66 n 6 LEU 66 B PHE 67 n 7 PHE 67 B SER 68 n 8 SER 68 B MET 69 n 9 MET 69 B LEU 70 n 10 LEU 70 B ASP 71 n 11 ASP 71 B GLN 72 n 12 GLN 72 B ARG 73 n 13 ARG 73 B PHE 74 n 14 PHE 74 B GLY 75 n 15 GLY 75 B GLY 76 n 16 GLY 76 B GLY 77 n 17 GLY 77 B GLU 78 n 18 GLU 78 B ASP 79 n 19 ASP 79 B LEU 80 n 20 LEU 80 B LEU 81 n 21 LEU 81 B MET 82 n 22 MET 82 B SER 83 n 23 SER 83 B GLY 84 n 24 GLY 84 B ASP 85 n 25 ASP 85 B ASN 86 n 26 ASN 86 B GLY 87 n 27 GLY 87 B MET 88 n 28 MET 88 B THR 89 n 29 THR 89 B GLU 90 n 30 GLU 90 B GLU 91 n 31 GLU 91 B LYS 92 n 32 LYS 92 B LEU 93 n 33 LEU 93 B ARG 94 n 34 ARG 94 B ARG 95 n 35 ARG 95 B TYR 96 n 36 TYR 96 B LEU 97 n 37 LEU 97 B LYS 98 n 38 LYS 98 B ARG 99 n 39 ARG 99 B THR 100 n 40 THR 100 B VAL 101 n 41 VAL 101 B THR 102 n 42 THR 102 B GLU 103 n 43 GLU 103 B LEU 104 n 44 LEU 104 B ASP 105 n 45 ASP 105 B SER 106 n 46 SER 106 B VAL 107 n 47 VAL 107 B THR 108 n 48 THR 108 B ALA 109 n 49 ALA 109 B ARG 110 n 50 ARG 110 B LEU 111 n 51 LEU 111 B ARG 112 n 52 ARG 112 B GLU 113 n 53 GLU 113 B VAL 114 n 54 VAL 114 B GLU 115 n 55 GLU 115 B HIS 116 n 56 HIS 116 B ARG 117 n 57 ARG 117 B ALA 118 n 58 ALA 118 B GLY 119 n 59 GLY 119 B GLU 120 n 60 GLU 120 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 2 A A HZ HG22 PHE THR 74 100 1.33 2 A B HG21 HG13 VAL VAL 107 107 1.34 7 B B HD13 HD2 LEU TYR 70 96 1.35 1 A GLU 78 -170.62 -151.80 1 A ASP 79 -152.11 -49.77 1 A SER 83 56.84 -153.13 1 A ASP 85 -169.99 49.66 1 A MET 88 -153.69 -152.98 1 A HIS 116 -67.85 -77.15 1 A ALA 118 60.51 -139.07 1 B GLU 78 -169.38 -151.99 1 B ASP 79 -149.41 -47.42 1 B SER 83 58.06 -147.92 1 B ASP 85 -171.11 42.98 1 B MET 88 -153.06 -149.51 1 B ALA 118 62.56 -142.22 2 A GLU 78 66.70 -72.31 2 A LEU 81 -70.80 -139.15 2 A MET 82 -175.49 -41.25 2 A ASP 85 -168.70 53.10 2 A GLU 115 -71.15 -113.36 2 A HIS 116 52.54 93.32 2 B GLU 78 70.67 -60.35 2 B LEU 81 -69.89 -139.88 2 B MET 82 -173.75 -42.22 2 B ASP 85 -170.52 49.84 2 B GLU 115 -74.19 -120.57 2 B HIS 116 59.63 103.64 3 A GLU 78 56.48 158.12 3 A ASP 79 175.20 -65.78 3 A MET 82 -164.46 -50.65 3 A SER 83 65.82 142.69 3 A ASP 85 -150.20 53.36 3 A SER 106 -90.33 -60.68 3 A GLU 115 -67.55 -107.31 3 A ARG 117 177.20 -27.17 3 A ALA 118 59.67 -135.61 3 B GLU 78 62.77 140.86 3 B ASP 79 -171.58 -52.95 3 B MET 82 -170.13 -47.31 3 B SER 83 62.62 143.93 3 B GLU 115 -75.18 -118.90 3 B ARG 117 177.14 -32.79 3 B ALA 118 61.40 -139.45 4 A ASP 79 174.08 -68.19 4 A LEU 80 64.83 140.93 4 A MET 82 75.38 -45.01 4 A ASP 85 -172.90 46.12 4 A ASN 86 -149.18 -153.44 4 A MET 88 -152.66 -150.70 4 A HIS 116 -59.43 -86.34 4 B ASP 79 -172.31 -57.05 4 B LEU 80 60.53 136.25 4 B MET 82 74.17 -45.61 4 B ASP 85 -169.76 -34.18 4 B ASN 86 -72.76 -149.15 4 B MET 88 -152.53 -143.09 4 B HIS 116 -62.96 -79.06 5 A GLU 78 38.44 -145.18 5 A ASP 79 178.19 -57.00 5 A MET 82 75.20 -56.80 5 A SER 83 -66.41 -147.80 5 A ASP 85 -170.01 65.44 5 A ASN 86 72.00 132.81 5 A MET 88 -56.90 -157.91 5 A ARG 117 -147.52 50.30 5 A ALA 118 52.53 -139.82 5 B GLU 78 41.99 -149.58 5 B ASP 79 179.80 -46.63 5 B MET 82 74.51 -54.21 5 B SER 83 -70.47 -144.57 5 B ASP 85 -157.28 -43.69 5 B ASN 86 177.58 128.99 5 B MET 88 -75.81 -149.56 5 B ARG 117 -153.38 47.40 5 B ALA 118 55.08 -142.63 6 A GLU 78 -64.59 -151.23 6 A ASP 79 -177.86 -59.87 6 A SER 83 66.57 140.52 6 A ASP 85 -175.47 57.21 6 A ASN 86 -65.14 -154.99 6 A ARG 117 -147.77 53.71 6 A ALA 118 53.15 -144.19 6 B GLU 78 -68.87 -152.42 6 B ASP 79 -176.92 -54.42 6 B SER 83 65.49 135.60 6 B ASP 85 -178.01 55.08 6 B ASN 86 -63.97 -153.86 6 B ARG 117 -152.68 50.27 6 B ALA 118 56.02 -145.03 7 A GLU 78 -63.28 -144.09 7 A ASP 79 -175.97 -55.37 7 A SER 83 58.35 -148.82 7 A ASP 85 -166.96 48.57 7 A ASN 86 60.82 130.58 7 A HIS 116 -60.92 -77.95 7 A ALA 118 59.47 -139.63 7 B GLU 78 -68.20 -144.41 7 B ASP 79 -176.99 -50.40 7 B SER 83 58.37 -142.78 7 B ASP 85 -170.05 48.73 7 B ASN 86 64.84 135.69 7 B ALA 118 60.99 -142.95 Structure of fused docking domains from the erythromycin polyketide synthase (DEBS), a model for the interaction between DEBS2 and DEBS3: the B domain 1 N N 1 N N A SER 62 A SER 2 HELX_P A GLY 76 A GLY 16 1 1 15 A MET 88 A MET 28 HELX_P A ALA 118 A ALA 58 1 2 31 B SER 62 B SER 2 HELX_P B GLY 76 B GLY 16 1 3 15 B MET 88 B MET 28 HELX_P B ALA 118 B ALA 58 1 4 31 TRANSFERASE FOUR HELIX BUNDLE, HOMODIMER, TRANSFERASE ERY2_SACER UNP 1 3548 Q03132 ASDDELFSMLDQRFGGGEDLLMSGDNGMTEEKLRRYLKRTVTELDSVTARLREVEHRAGE ERY3_SACER UNP 1 2 Q03133 SGDNGMTEEKLRRYLKRTVTELDSVTARLREVEHRAGE 3548 3567 1PZR 61 80 Q03132 A 1 1 20 2 39 1PZR 83 120 Q03133 A 2 23 60 3548 3567 1PZR 61 80 Q03132 B 1 1 20 2 39 1PZR 83 120 Q03133 B 2 23 60 1 SEE REMARK 999 LEU 81 1PZR A Q03132 21 1 SEE REMARK 999 MET 82 1PZR A Q03132 22 3 SEE REMARK 999 LEU 81 1PZR B Q03132 21 3 SEE REMARK 999 MET 82 1PZR B Q03132 22