0.009160 0.005289 0.000000 0.000000 0.010577 0.000000 0.000000 0.000000 0.011034 0.00000 0.00000 0.00000 Mac Sweeney, A. Lange, R. D'Arcy, A. Douangamath, A. Surivet, J.-P. Oefner, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 109.168 109.168 90.630 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C6 H8 O7 192.124 CITRIC ACID non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C4 H10 N O5 P 183.100 3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID FOSMIDOMYCIN non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C21 H30 N7 O17 P3 745.421 NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N C N 75 N O N 76 N O N 77 N C N 78 N C N 79 N O N 80 N C N 81 N C N 82 N O N 83 N O N 84 N C N 85 N O N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 R C N 97 N C N 98 N O N 99 N C N 100 N S N 101 N O N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N O N 110 N N N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N P N 117 N O N 118 N O N 119 N O N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N N N 131 S C N 132 N C N 133 N O N 134 N C N 135 N C N 136 N C N 137 N O N 138 N N N 139 N O N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N N N 151 S C N 152 N C N 153 N O N 154 N C N 155 N C N 156 N C N 157 N O N 158 N O N 159 N O N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 N C N 171 N C N 172 N O N 173 N O N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N N N 180 S C N 181 N C N 182 N O N 183 N C Y 184 N C Y 185 N N Y 186 N C Y 187 N C Y 188 N N N 189 N O N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N O N 201 N H N 202 N H N 203 N N N 204 S C N 205 N C N 206 N O N 207 S C N 208 N C N 209 N C N 210 N C N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N N N 226 S C N 227 N C N 228 N O N 229 N C N 230 N C N 231 N C N 232 N C N 233 N O N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C N 252 N C N 253 N C N 254 N C N 255 N N N 256 N O N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N N N 273 S C N 274 N C N 275 N O N 276 N C N 277 N C N 278 N S N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N N N 293 S C N 294 N C N 295 N O N 296 N O N 297 N C N 298 N C N 299 N SE N 300 N C N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 S P N 313 N O N 314 N O N 315 N O N 316 N C N 317 R C N 318 N O N 319 R C N 320 N O N 321 R C N 322 N O N 323 R C Y 324 N N Y 325 N C Y 326 N N Y 327 N C Y 328 N C N 329 N N Y 330 N N Y 331 N C Y 332 N N Y 333 N C N 334 N O N 335 S P N 336 N O N 337 N O N 338 N O N 339 N C N 340 R C N 341 N O N 342 S C N 343 N O N 344 R C N 345 N O N 346 R C N 347 N N N 348 N C N 349 N C N 350 N C N 351 N O N 352 N N N 353 N C N 354 N C N 355 N C N 356 N P N 357 N O N 358 N O N 359 N O N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N N N 391 S C N 392 N C N 393 N O N 394 N C Y 395 N C Y 396 N C Y 397 N C Y 398 N C Y 399 N C Y 400 N C N 401 N O N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N N N 414 S C N 415 N C N 416 N O N 417 N C N 418 N C N 419 N C N 420 N O N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N N N 431 S C N 432 N C N 433 N O N 434 N C N 435 N O N 436 N O N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N N N 445 S C N 446 N C N 447 N O N 448 R C N 449 N O N 450 N C N 451 N O N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N N N 462 S C N 463 N C N 464 N O N 465 N C Y 466 N C Y 467 N C Y 468 N C Y 469 N N Y 470 N C Y 471 N C Y 472 N C Y 473 N C Y 474 N C N 475 N O N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N N N 489 S C N 490 N C N 491 N O N 492 N C Y 493 N C Y 494 N C Y 495 N C Y 496 N C Y 497 N C Y 498 N C N 499 N O N 500 N O N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N N N 513 S C N 514 N C N 515 N O N 516 N C N 517 N C N 518 N C N 519 N O N 520 N H N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N doub N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N doub N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N doub N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N doub N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N sing N 177 N sing N 178 N sing N 179 N sing Y 180 N sing Y 181 N doub Y 182 N doub N 183 N sing Y 184 N sing N 185 N sing Y 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N doub N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N doub N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing Y 319 N sing Y 320 N sing Y 321 N doub N 322 N sing Y 323 N sing Y 324 N sing Y 325 N doub N 326 N sing Y 327 N doub N 328 N sing N 329 N sing Y 330 N sing Y 331 N doub N 332 N sing Y 333 N sing N 334 N sing N 335 N doub N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N doub N 360 N sing N 361 N sing N 362 N sing N 363 N doub N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N doub N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N doub N 385 N sing N 386 N sing N 387 N sing N 388 N sing Y 389 N doub Y 390 N sing Y 391 N sing N 392 N sing Y 393 N doub N 394 N sing Y 395 N doub N 396 N sing Y 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N doub N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N doub N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N doub N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N doub N 454 N sing N 455 N sing N 456 N sing N 457 N sing Y 458 N doub Y 459 N sing Y 460 N sing N 461 N sing Y 462 N doub Y 463 N sing Y 464 N sing N 465 N sing Y 466 N sing Y 467 N doub N 468 N sing Y 469 N doub N 470 N sing Y 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N doub N 482 N sing N 483 N sing N 484 N sing N 485 N sing Y 486 N doub Y 487 N sing Y 488 N sing N 489 N sing Y 490 N doub N 491 N sing Y 492 N doub N 493 N sing Y 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N doub N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 345 115 127 10.1016/j.jmb.2004.10.030 15567415 The crystal structure of E.coli 1-deoxy-D-xylulose-5-phosphate reductoisomerase in a ternary complex with the antimalarial compound fosmidomycin and NADPH reveals a tight-binding closed enzyme conformation. 2005 10.2210/pdb1q0h/pdb pdb_00001q0h 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 Osmic mirrors IMAGE PLATE 2003-03-01 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE ENRAF-NONIUS FR571 45295.875 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 1 man polymer 183.100 3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID 1 syn non-polymer 745.421 NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE 1 syn non-polymer 192.124 CITRIC ACID 1 syn non-polymer 18.015 water 265 nat water DXP reductoisomerase, 1-deoxyxylulose-5-phosphate reductoisomerase, IspC no yes HHHHHHSG(MSE)KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTR(MSE)VEQCLEFSPRYAV(MSE)DDEA SAKLLKT(MSE)LQQQGSRTEVLSGQQAACD(MSE)AALEDVDQV(MSE)AAIVGAAGLLPTLAAIRAGKTILLANKESL VTCGRLF(MSE)DAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLAT (MSE)TPDQACRHPNWS(MSE)GRKISVDSAT(MSE)(MSE)NKGLEYIEARWLFNASASQ(MSE)EVLIHPQSVIHS (MSE)VRYQDGSVLAQLGEPD(MSE)RTPIAHT(MSE)AWPNRVNSGVKPLDFCKLSALTFAAPDYDRYPCLKLA(MSE) EAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAALNLSVLEK(MSE)D(MSE)REPQCVDDVLSVDANAREVARKEV (MSE)RLAS HHHHHHSGMKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQ GSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILLANKESLVTCGRLFMDAVKQSKAQLLPVDSE HNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEY IEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSGVKPLDFCKLSALTFAAPDY DRYPCLKLAMEAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAALNLSVLEKMDMREPQCVDDVLSVDANAREVARKE VMRLAS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia Escherichia coli sample DXR 562 Escherichia coli 469008 Escherichia coli BL21(DE3) BL21(DE3) PLASMID pDS-6hisNdeI 1 3.44 64.26 VAPOR DIFFUSION, HANGING DROP 5.0 2.6M NaCl, 0.1M Acetate-HCl pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 pdbx_unobs_or_zero_occ_atoms chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_unobs_or_zero_occ_atoms struct_conn struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond repository Initial release Version format compliance Derived calculations Version format compliance Advisory Data collection Advisory Data collection Database references Derived calculations Refinement description Data collection 1 0 2004-07-20 1 1 2008-04-29 1 2 2011-07-13 1 3 2018-10-03 1 4 2023-08-16 1 5 2023-11-15 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _chem_comp_atom.atom_id _chem_comp_bond.atom_id_2 Crystal structure of DXR in complex with fosmidomycin Crystal structure of DXR in complex with the substrate 1-deoxy-D-xylulose-5-phosphate RCSB Y RCSB 2003-07-16 REL REL FOM 3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE CIT CITRIC ACID HOH water 1K5H PDB ENTRY 1K5H (NADPH binding domain) PDB experimental model FFF 100 2 FOM FOM 400 A NDP 350 3 NDP NDP 401 A CIT 379 4 CIT CIT 402 A HOH 1 5 HOH HOH 403 A HOH 2 5 HOH HOH 404 A HOH 3 5 HOH HOH 405 A HOH 4 5 HOH HOH 406 A HOH 5 5 HOH HOH 407 A HOH 6 5 HOH HOH 408 A HOH 7 5 HOH HOH 409 A HOH 8 5 HOH HOH 410 A HOH 9 5 HOH HOH 411 A HOH 10 5 HOH HOH 412 A HOH 11 5 HOH HOH 413 A HOH 12 5 HOH HOH 414 A HOH 13 5 HOH HOH 415 A HOH 14 5 HOH HOH 416 A HOH 15 5 HOH HOH 417 A HOH 16 5 HOH HOH 418 A HOH 17 5 HOH HOH 419 A HOH 18 5 HOH HOH 420 A HOH 19 5 HOH HOH 421 A HOH 20 5 HOH HOH 422 A HOH 21 5 HOH HOH 423 A HOH 22 5 HOH HOH 424 A HOH 23 5 HOH HOH 425 A HOH 24 5 HOH HOH 426 A HOH 25 5 HOH HOH 427 A HOH 26 5 HOH HOH 428 A HOH 27 5 HOH HOH 429 A HOH 28 5 HOH HOH 430 A HOH 29 5 HOH HOH 431 A HOH 30 5 HOH HOH 432 A HOH 31 5 HOH HOH 433 A HOH 32 5 HOH HOH 434 A HOH 33 5 HOH HOH 435 A HOH 34 5 HOH HOH 436 A HOH 35 5 HOH HOH 437 A HOH 36 5 HOH HOH 438 A HOH 37 5 HOH HOH 439 A HOH 38 5 HOH HOH 440 A HOH 39 5 HOH HOH 441 A HOH 40 5 HOH HOH 442 A HOH 41 5 HOH HOH 443 A HOH 42 5 HOH HOH 444 A HOH 43 5 HOH HOH 445 A HOH 44 5 HOH HOH 446 A HOH 45 5 HOH HOH 447 A HOH 46 5 HOH HOH 448 A HOH 47 5 HOH HOH 449 A HOH 48 5 HOH HOH 450 A HOH 49 5 HOH HOH 451 A HOH 50 5 HOH HOH 452 A HOH 51 5 HOH HOH 453 A HOH 52 5 HOH HOH 454 A HOH 53 5 HOH HOH 455 A HOH 54 5 HOH HOH 456 A HOH 55 5 HOH HOH 457 A HOH 56 5 HOH HOH 458 A HOH 57 5 HOH HOH 459 A HOH 58 5 HOH HOH 460 A HOH 59 5 HOH HOH 461 A HOH 60 5 HOH HOH 462 A HOH 61 5 HOH HOH 463 A HOH 62 5 HOH HOH 464 A HOH 63 5 HOH HOH 465 A HOH 64 5 HOH HOH 466 A HOH 65 5 HOH HOH 467 A HOH 66 5 HOH HOH 468 A HOH 67 5 HOH HOH 469 A HOH 68 5 HOH HOH 470 A HOH 69 5 HOH HOH 471 A HOH 70 5 HOH HOH 472 A HOH 71 5 HOH HOH 473 A HOH 72 5 HOH HOH 474 A HOH 73 5 HOH HOH 475 A HOH 74 5 HOH HOH 476 A HOH 75 5 HOH HOH 477 A HOH 76 5 HOH HOH 478 A HOH 77 5 HOH HOH 479 A HOH 78 5 HOH HOH 480 A HOH 79 5 HOH HOH 481 A HOH 80 5 HOH HOH 482 A HOH 81 5 HOH HOH 483 A HOH 82 5 HOH HOH 484 A HOH 83 5 HOH HOH 485 A HOH 84 5 HOH HOH 486 A HOH 85 5 HOH HOH 487 A HOH 86 5 HOH HOH 488 A HOH 87 5 HOH HOH 489 A HOH 88 5 HOH HOH 490 A HOH 89 5 HOH HOH 491 A HOH 90 5 HOH HOH 492 A HOH 91 5 HOH HOH 493 A HOH 92 5 HOH HOH 494 A HOH 93 5 HOH HOH 495 A HOH 94 5 HOH HOH 496 A HOH 95 5 HOH HOH 497 A HOH 96 5 HOH HOH 498 A HOH 97 5 HOH HOH 499 A HOH 98 5 HOH HOH 500 A HOH 99 5 HOH HOH 501 A HOH 100 5 HOH HOH 502 A HOH 101 5 HOH HOH 503 A HOH 102 5 HOH HOH 504 A HOH 103 5 HOH HOH 505 A HOH 104 5 HOH HOH 506 A HOH 105 5 HOH HOH 507 A HOH 106 5 HOH HOH 508 A HOH 107 5 HOH HOH 509 A HOH 108 5 HOH HOH 510 A HOH 109 5 HOH HOH 511 A HOH 110 5 HOH HOH 512 A HOH 111 5 HOH HOH 513 A HOH 112 5 HOH HOH 514 A HOH 113 5 HOH HOH 515 A HOH 114 5 HOH HOH 516 A HOH 115 5 HOH HOH 517 A HOH 116 5 HOH HOH 518 A HOH 117 5 HOH HOH 519 A HOH 118 5 HOH HOH 520 A HOH 119 5 HOH HOH 521 A HOH 120 5 HOH HOH 522 A HOH 121 5 HOH HOH 523 A HOH 122 5 HOH HOH 524 A HOH 123 5 HOH HOH 525 A HOH 124 5 HOH HOH 526 A HOH 125 5 HOH HOH 527 A HOH 126 5 HOH HOH 528 A HOH 127 5 HOH HOH 529 A HOH 128 5 HOH HOH 530 A HOH 129 5 HOH HOH 531 A HOH 130 5 HOH HOH 532 A HOH 131 5 HOH HOH 533 A HOH 132 5 HOH HOH 534 A HOH 133 5 HOH HOH 535 A HOH 134 5 HOH HOH 536 A HOH 135 5 HOH HOH 537 A HOH 136 5 HOH HOH 538 A HOH 137 5 HOH HOH 539 A HOH 138 5 HOH HOH 540 A HOH 139 5 HOH HOH 541 A HOH 140 5 HOH HOH 542 A HOH 141 5 HOH HOH 543 A HOH 142 5 HOH HOH 544 A HOH 143 5 HOH HOH 545 A HOH 144 5 HOH HOH 546 A HOH 145 5 HOH HOH 547 A HOH 146 5 HOH HOH 548 A HOH 147 5 HOH HOH 549 A HOH 148 5 HOH HOH 550 A HOH 149 5 HOH HOH 551 A HOH 150 5 HOH HOH 552 A HOH 151 5 HOH HOH 553 A HOH 152 5 HOH HOH 554 A HOH 153 5 HOH HOH 555 A HOH 154 5 HOH HOH 556 A HOH 155 5 HOH HOH 557 A HOH 156 5 HOH HOH 558 A HOH 157 5 HOH HOH 559 A HOH 158 5 HOH HOH 560 A HOH 159 5 HOH HOH 561 A HOH 160 5 HOH HOH 562 A HOH 161 5 HOH HOH 563 A HOH 162 5 HOH HOH 564 A HOH 163 5 HOH HOH 565 A HOH 164 5 HOH HOH 566 A HOH 165 5 HOH HOH 567 A HOH 166 5 HOH HOH 568 A HOH 167 5 HOH HOH 569 A HOH 168 5 HOH HOH 570 A HOH 169 5 HOH HOH 571 A HOH 170 5 HOH HOH 572 A HOH 171 5 HOH HOH 573 A HOH 172 5 HOH HOH 574 A HOH 173 5 HOH HOH 575 A HOH 174 5 HOH HOH 576 A HOH 175 5 HOH HOH 577 A HOH 176 5 HOH HOH 578 A HOH 177 5 HOH HOH 579 A HOH 178 5 HOH HOH 580 A HOH 179 5 HOH HOH 581 A HOH 180 5 HOH HOH 582 A HOH 181 5 HOH HOH 583 A HOH 182 5 HOH HOH 584 A HOH 183 5 HOH HOH 585 A HOH 184 5 HOH HOH 586 A HOH 185 5 HOH HOH 587 A HOH 186 5 HOH HOH 588 A HOH 187 5 HOH HOH 589 A HOH 188 5 HOH HOH 590 A HOH 189 5 HOH HOH 591 A HOH 190 5 HOH HOH 592 A HOH 191 5 HOH HOH 593 A HOH 192 5 HOH HOH 594 A HOH 193 5 HOH HOH 595 A HOH 194 5 HOH HOH 596 A HOH 195 5 HOH HOH 597 A HOH 196 5 HOH HOH 598 A HOH 197 5 HOH HOH 599 A HOH 198 5 HOH HOH 600 A HOH 199 5 HOH HOH 601 A HOH 200 5 HOH HOH 602 A HOH 201 5 HOH HOH 603 A HOH 202 5 HOH HOH 604 A HOH 203 5 HOH HOH 605 A HOH 204 5 HOH HOH 606 A HOH 205 5 HOH HOH 607 A HOH 206 5 HOH HOH 608 A HOH 207 5 HOH HOH 609 A HOH 208 5 HOH HOH 610 A HOH 209 5 HOH HOH 611 A HOH 210 5 HOH HOH 612 A HOH 211 5 HOH HOH 613 A HOH 212 5 HOH HOH 614 A HOH 213 5 HOH HOH 615 A HOH 214 5 HOH HOH 616 A HOH 215 5 HOH HOH 617 A HOH 216 5 HOH HOH 618 A HOH 217 5 HOH HOH 619 A HOH 218 5 HOH HOH 620 A HOH 219 5 HOH HOH 621 A HOH 220 5 HOH HOH 622 A HOH 221 5 HOH HOH 623 A HOH 222 5 HOH HOH 624 A HOH 223 5 HOH HOH 625 A HOH 224 5 HOH HOH 626 A HOH 225 5 HOH HOH 627 A HOH 226 5 HOH HOH 628 A HOH 227 5 HOH HOH 629 A HOH 228 5 HOH HOH 630 A HOH 229 5 HOH HOH 631 A HOH 230 5 HOH HOH 632 A HOH 231 5 HOH HOH 633 A HOH 232 5 HOH HOH 634 A HOH 233 5 HOH HOH 635 A HOH 234 5 HOH HOH 636 A HOH 235 5 HOH HOH 637 A HOH 236 5 HOH HOH 638 A HOH 237 5 HOH HOH 639 A HOH 238 5 HOH HOH 640 A HOH 239 5 HOH HOH 641 A HOH 240 5 HOH HOH 642 A HOH 241 5 HOH HOH 643 A HOH 242 5 HOH HOH 644 A HOH 243 5 HOH HOH 645 A HOH 244 5 HOH HOH 646 A HOH 245 5 HOH HOH 647 A HOH 246 5 HOH HOH 648 A HOH 247 5 HOH HOH 649 A HOH 248 5 HOH HOH 650 A HOH 249 5 HOH HOH 651 A HOH 250 5 HOH HOH 652 A HOH 251 5 HOH HOH 653 A HOH 252 5 HOH HOH 654 A HOH 253 5 HOH HOH 655 A HOH 254 5 HOH HOH 656 A HOH 255 5 HOH HOH 657 A HOH 256 5 HOH HOH 658 A HOH 257 5 HOH HOH 659 A HOH 258 5 HOH HOH 660 A HOH 259 5 HOH HOH 661 A HOH 260 5 HOH HOH 662 A HOH 261 5 HOH HOH 663 A HOH 262 5 HOH HOH 664 A HOH 263 5 HOH HOH 665 A HOH 264 5 HOH HOH 666 A HOH 265 5 HOH HOH 667 A n 1 -7 A n 2 -6 A n 3 -5 A n 4 -4 A n 5 -3 A n 6 -2 A n 7 -1 A n 8 0 A MSE 1 n 9 MSE 1 A LYS 2 n 10 LYS 2 A GLN 3 n 11 GLN 3 A LEU 4 n 12 LEU 4 A THR 5 n 13 THR 5 A ILE 6 n 14 ILE 6 A LEU 7 n 15 LEU 7 A GLY 8 n 16 GLY 8 A SER 9 n 17 SER 9 A THR 10 n 18 THR 10 A GLY 11 n 19 GLY 11 A SER 12 n 20 SER 12 A ILE 13 n 21 ILE 13 A GLY 14 n 22 GLY 14 A CYS 15 n 23 CYS 15 A SER 16 n 24 SER 16 A THR 17 n 25 THR 17 A LEU 18 n 26 LEU 18 A ASP 19 n 27 ASP 19 A VAL 20 n 28 VAL 20 A VAL 21 n 29 VAL 21 A ARG 22 n 30 ARG 22 A HIS 23 n 31 HIS 23 A ASN 24 n 32 ASN 24 A PRO 25 n 33 PRO 25 A GLU 26 n 34 GLU 26 A HIS 27 n 35 HIS 27 A PHE 28 n 36 PHE 28 A ARG 29 n 37 ARG 29 A VAL 30 n 38 VAL 30 A VAL 31 n 39 VAL 31 A ALA 32 n 40 ALA 32 A LEU 33 n 41 LEU 33 A VAL 34 n 42 VAL 34 A ALA 35 n 43 ALA 35 A GLY 36 n 44 GLY 36 A LYS 37 n 45 LYS 37 A ASN 38 n 46 ASN 38 A VAL 39 n 47 VAL 39 A THR 40 n 48 THR 40 A ARG 41 n 49 ARG 41 A MSE 42 n 50 MSE 42 A VAL 43 n 51 VAL 43 A GLU 44 n 52 GLU 44 A GLN 45 n 53 GLN 45 A CYS 46 n 54 CYS 46 A LEU 47 n 55 LEU 47 A GLU 48 n 56 GLU 48 A PHE 49 n 57 PHE 49 A SER 50 n 58 SER 50 A PRO 51 n 59 PRO 51 A ARG 52 n 60 ARG 52 A TYR 53 n 61 TYR 53 A ALA 54 n 62 ALA 54 A VAL 55 n 63 VAL 55 A MSE 56 n 64 MSE 56 A ASP 57 n 65 ASP 57 A ASP 58 n 66 ASP 58 A GLU 59 n 67 GLU 59 A ALA 60 n 68 ALA 60 A SER 61 n 69 SER 61 A ALA 62 n 70 ALA 62 A LYS 63 n 71 LYS 63 A LEU 64 n 72 LEU 64 A LEU 65 n 73 LEU 65 A LYS 66 n 74 LYS 66 A THR 67 n 75 THR 67 A MSE 68 n 76 MSE 68 A LEU 69 n 77 LEU 69 A GLN 70 n 78 GLN 70 A GLN 71 n 79 GLN 71 A GLN 72 n 80 GLN 72 A GLY 73 n 81 GLY 73 A SER 74 n 82 SER 74 A ARG 75 n 83 ARG 75 A THR 76 n 84 THR 76 A GLU 77 n 85 GLU 77 A VAL 78 n 86 VAL 78 A LEU 79 n 87 LEU 79 A SER 80 n 88 SER 80 A GLY 81 n 89 GLY 81 A GLN 82 n 90 GLN 82 A GLN 83 n 91 GLN 83 A ALA 84 n 92 ALA 84 A ALA 85 n 93 ALA 85 A CYS 86 n 94 CYS 86 A ASP 87 n 95 ASP 87 A MSE 88 n 96 MSE 88 A ALA 89 n 97 ALA 89 A ALA 90 n 98 ALA 90 A LEU 91 n 99 LEU 91 A GLU 92 n 100 GLU 92 A ASP 93 n 101 ASP 93 A VAL 94 n 102 VAL 94 A ASP 95 n 103 ASP 95 A GLN 96 n 104 GLN 96 A VAL 97 n 105 VAL 97 A MSE 98 n 106 MSE 98 A ALA 99 n 107 ALA 99 A ALA 100 n 108 ALA 100 A ILE 101 n 109 ILE 101 A VAL 102 n 110 VAL 102 A GLY 103 n 111 GLY 103 A ALA 104 n 112 ALA 104 A ALA 105 n 113 ALA 105 A GLY 106 n 114 GLY 106 A LEU 107 n 115 LEU 107 A LEU 108 n 116 LEU 108 A PRO 109 n 117 PRO 109 A THR 110 n 118 THR 110 A LEU 111 n 119 LEU 111 A ALA 112 n 120 ALA 112 A ALA 113 n 121 ALA 113 A ILE 114 n 122 ILE 114 A ARG 115 n 123 ARG 115 A ALA 116 n 124 ALA 116 A GLY 117 n 125 GLY 117 A LYS 118 n 126 LYS 118 A THR 119 n 127 THR 119 A ILE 120 n 128 ILE 120 A LEU 121 n 129 LEU 121 A LEU 122 n 130 LEU 122 A ALA 123 n 131 ALA 123 A ASN 124 n 132 ASN 124 A LYS 125 n 133 LYS 125 A GLU 126 n 134 GLU 126 A SER 127 n 135 SER 127 A LEU 128 n 136 LEU 128 A VAL 129 n 137 VAL 129 A THR 130 n 138 THR 130 A CYS 131 n 139 CYS 131 A GLY 132 n 140 GLY 132 A ARG 133 n 141 ARG 133 A LEU 134 n 142 LEU 134 A PHE 135 n 143 PHE 135 A MSE 136 n 144 MSE 136 A ASP 137 n 145 ASP 137 A ALA 138 n 146 ALA 138 A VAL 139 n 147 VAL 139 A LYS 140 n 148 LYS 140 A GLN 141 n 149 GLN 141 A SER 142 n 150 SER 142 A LYS 143 n 151 LYS 143 A ALA 144 n 152 ALA 144 A GLN 145 n 153 GLN 145 A LEU 146 n 154 LEU 146 A LEU 147 n 155 LEU 147 A PRO 148 n 156 PRO 148 A VAL 149 n 157 VAL 149 A ASP 150 n 158 ASP 150 A SER 151 n 159 SER 151 A GLU 152 n 160 GLU 152 A HIS 153 n 161 HIS 153 A ASN 154 n 162 ASN 154 A ALA 155 n 163 ALA 155 A ILE 156 n 164 ILE 156 A PHE 157 n 165 PHE 157 A GLN 158 n 166 GLN 158 A SER 159 n 167 SER 159 A LEU 160 n 168 LEU 160 A PRO 161 n 169 PRO 161 A GLN 162 n 170 GLN 162 A PRO 163 n 171 PRO 163 A ILE 164 n 172 ILE 164 A GLN 165 n 173 GLN 165 A HIS 166 n 174 HIS 166 A ASN 167 n 175 ASN 167 A LEU 168 n 176 LEU 168 A GLY 169 n 177 GLY 169 A TYR 170 n 178 TYR 170 A ALA 171 n 179 ALA 171 A ASP 172 n 180 ASP 172 A LEU 173 n 181 LEU 173 A GLU 174 n 182 GLU 174 A GLN 175 n 183 GLN 175 A ASN 176 n 184 ASN 176 A GLY 177 n 185 GLY 177 A VAL 178 n 186 VAL 178 A VAL 179 n 187 VAL 179 A SER 180 n 188 SER 180 A ILE 181 n 189 ILE 181 A LEU 182 n 190 LEU 182 A LEU 183 n 191 LEU 183 A THR 184 n 192 THR 184 A GLY 185 n 193 GLY 185 A SER 186 n 194 SER 186 A GLY 187 n 195 GLY 187 A GLY 188 n 196 GLY 188 A PRO 189 n 197 PRO 189 A PHE 190 n 198 PHE 190 A ARG 191 n 199 ARG 191 A GLU 192 n 200 GLU 192 A THR 193 n 201 THR 193 A PRO 194 n 202 PRO 194 A LEU 195 n 203 LEU 195 A ARG 196 n 204 ARG 196 A ASP 197 n 205 ASP 197 A LEU 198 n 206 LEU 198 A ALA 199 n 207 ALA 199 A THR 200 n 208 THR 200 A MSE 201 n 209 MSE 201 A THR 202 n 210 THR 202 A PRO 203 n 211 PRO 203 A ASP 204 n 212 ASP 204 A GLN 205 n 213 GLN 205 A ALA 206 n 214 ALA 206 A CYS 207 n 215 CYS 207 A ARG 208 n 216 ARG 208 A HIS 209 n 217 HIS 209 A PRO 210 n 218 PRO 210 A ASN 211 n 219 ASN 211 A TRP 212 n 220 TRP 212 A SER 213 n 221 SER 213 A MSE 214 n 222 MSE 214 A GLY 215 n 223 GLY 215 A ARG 216 n 224 ARG 216 A LYS 217 n 225 LYS 217 A ILE 218 n 226 ILE 218 A SER 219 n 227 SER 219 A VAL 220 n 228 VAL 220 A ASP 221 n 229 ASP 221 A SER 222 n 230 SER 222 A ALA 223 n 231 ALA 223 A THR 224 n 232 THR 224 A MSE 225 n 233 MSE 225 A MSE 226 n 234 MSE 226 A ASN 227 n 235 ASN 227 A LYS 228 n 236 LYS 228 A GLY 229 n 237 GLY 229 A LEU 230 n 238 LEU 230 A GLU 231 n 239 GLU 231 A TYR 232 n 240 TYR 232 A ILE 233 n 241 ILE 233 A GLU 234 n 242 GLU 234 A ALA 235 n 243 ALA 235 A ARG 236 n 244 ARG 236 A TRP 237 n 245 TRP 237 A LEU 238 n 246 LEU 238 A PHE 239 n 247 PHE 239 A ASN 240 n 248 ASN 240 A ALA 241 n 249 ALA 241 A SER 242 n 250 SER 242 A ALA 243 n 251 ALA 243 A SER 244 n 252 SER 244 A GLN 245 n 253 GLN 245 A MSE 246 n 254 MSE 246 A GLU 247 n 255 GLU 247 A VAL 248 n 256 VAL 248 A LEU 249 n 257 LEU 249 A ILE 250 n 258 ILE 250 A HIS 251 n 259 HIS 251 A PRO 252 n 260 PRO 252 A GLN 253 n 261 GLN 253 A SER 254 n 262 SER 254 A VAL 255 n 263 VAL 255 A ILE 256 n 264 ILE 256 A HIS 257 n 265 HIS 257 A SER 258 n 266 SER 258 A MSE 259 n 267 MSE 259 A VAL 260 n 268 VAL 260 A ARG 261 n 269 ARG 261 A TYR 262 n 270 TYR 262 A GLN 263 n 271 GLN 263 A ASP 264 n 272 ASP 264 A GLY 265 n 273 GLY 265 A SER 266 n 274 SER 266 A VAL 267 n 275 VAL 267 A LEU 268 n 276 LEU 268 A ALA 269 n 277 ALA 269 A GLN 270 n 278 GLN 270 A LEU 271 n 279 LEU 271 A GLY 272 n 280 GLY 272 A GLU 273 n 281 GLU 273 A PRO 274 n 282 PRO 274 A ASP 275 n 283 ASP 275 A MSE 276 n 284 MSE 276 A ARG 277 n 285 ARG 277 A THR 278 n 286 THR 278 A PRO 279 n 287 PRO 279 A ILE 280 n 288 ILE 280 A ALA 281 n 289 ALA 281 A HIS 282 n 290 HIS 282 A THR 283 n 291 THR 283 A MSE 284 n 292 MSE 284 A ALA 285 n 293 ALA 285 A TRP 286 n 294 TRP 286 A PRO 287 n 295 PRO 287 A ASN 288 n 296 ASN 288 A ARG 289 n 297 ARG 289 A VAL 290 n 298 VAL 290 A ASN 291 n 299 ASN 291 A SER 292 n 300 SER 292 A GLY 293 n 301 GLY 293 A VAL 294 n 302 VAL 294 A LYS 295 n 303 LYS 295 A PRO 296 n 304 PRO 296 A LEU 297 n 305 LEU 297 A ASP 298 n 306 ASP 298 A PHE 299 n 307 PHE 299 A CYS 300 n 308 CYS 300 A LYS 301 n 309 LYS 301 A LEU 302 n 310 LEU 302 A SER 303 n 311 SER 303 A ALA 304 n 312 ALA 304 A LEU 305 n 313 LEU 305 A THR 306 n 314 THR 306 A PHE 307 n 315 PHE 307 A ALA 308 n 316 ALA 308 A ALA 309 n 317 ALA 309 A PRO 310 n 318 PRO 310 A ASP 311 n 319 ASP 311 A TYR 312 n 320 TYR 312 A ASP 313 n 321 ASP 313 A ARG 314 n 322 ARG 314 A TYR 315 n 323 TYR 315 A PRO 316 n 324 PRO 316 A CYS 317 n 325 CYS 317 A LEU 318 n 326 LEU 318 A LYS 319 n 327 LYS 319 A LEU 320 n 328 LEU 320 A ALA 321 n 329 ALA 321 A MSE 322 n 330 MSE 322 A GLU 323 n 331 GLU 323 A ALA 324 n 332 ALA 324 A PHE 325 n 333 PHE 325 A GLU 326 n 334 GLU 326 A GLN 327 n 335 GLN 327 A GLY 328 n 336 GLY 328 A GLN 329 n 337 GLN 329 A ALA 330 n 338 ALA 330 A ALA 331 n 339 ALA 331 A THR 332 n 340 THR 332 A THR 333 n 341 THR 333 A ALA 334 n 342 ALA 334 A LEU 335 n 343 LEU 335 A ASN 336 n 344 ASN 336 A ALA 337 n 345 ALA 337 A ALA 338 n 346 ALA 338 A ASN 339 n 347 ASN 339 A GLU 340 n 348 GLU 340 A ILE 341 n 349 ILE 341 A THR 342 n 350 THR 342 A VAL 343 n 351 VAL 343 A ALA 344 n 352 ALA 344 A ALA 345 n 353 ALA 345 A PHE 346 n 354 PHE 346 A LEU 347 n 355 LEU 347 A ALA 348 n 356 ALA 348 A GLN 349 n 357 GLN 349 A GLN 350 n 358 GLN 350 A ILE 351 n 359 ILE 351 A ARG 352 n 360 ARG 352 A PHE 353 n 361 PHE 353 A THR 354 n 362 THR 354 A ASP 355 n 363 ASP 355 A ILE 356 n 364 ILE 356 A ALA 357 n 365 ALA 357 A ALA 358 n 366 ALA 358 A LEU 359 n 367 LEU 359 A ASN 360 n 368 ASN 360 A LEU 361 n 369 LEU 361 A SER 362 n 370 SER 362 A VAL 363 n 371 VAL 363 A LEU 364 n 372 LEU 364 A GLU 365 n 373 GLU 365 A LYS 366 n 374 LYS 366 A MSE 367 n 375 MSE 367 A ASP 368 n 376 ASP 368 A MSE 369 n 377 MSE 369 A ARG 370 n 378 ARG 370 A GLU 371 n 379 GLU 371 A PRO 372 n 380 PRO 372 A GLN 373 n 381 GLN 373 A CYS 374 n 382 CYS 374 A VAL 375 n 383 VAL 375 A ASP 376 n 384 ASP 376 A ASP 377 n 385 ASP 377 A VAL 378 n 386 VAL 378 A LEU 379 n 387 LEU 379 A SER 380 n 388 SER 380 A VAL 381 n 389 VAL 381 A ASP 382 n 390 ASP 382 A ALA 383 n 391 ALA 383 A ASN 384 n 392 ASN 384 A ALA 385 n 393 ALA 385 A ARG 386 n 394 ARG 386 A GLU 387 n 395 GLU 387 A VAL 388 n 396 VAL 388 A ALA 389 n 397 ALA 389 A ARG 390 n 398 ARG 390 A LYS 391 n 399 LYS 391 A GLU 392 n 400 GLU 392 A VAL 393 n 401 VAL 393 A MSE 394 n 402 MSE 394 A ARG 395 n 403 ARG 395 A LEU 396 n 404 LEU 396 A ALA 397 n 405 ALA 397 A SER 398 n 406 SER 398 A author_and_software_defined_assembly PISA,PQS 2 dimeric 6220 -25 30520 A MSE 1 SELENOMETHIONINE A MSE 9 MET A MSE 42 SELENOMETHIONINE A MSE 50 MET A MSE 56 SELENOMETHIONINE A MSE 64 MET A MSE 68 SELENOMETHIONINE A MSE 76 MET A MSE 88 SELENOMETHIONINE A MSE 96 MET A MSE 98 SELENOMETHIONINE A MSE 106 MET A MSE 136 SELENOMETHIONINE A MSE 144 MET A MSE 201 SELENOMETHIONINE A MSE 209 MET A MSE 214 SELENOMETHIONINE A MSE 222 MET A MSE 225 SELENOMETHIONINE A MSE 233 MET A MSE 226 SELENOMETHIONINE A MSE 234 MET A MSE 246 SELENOMETHIONINE A MSE 254 MET A MSE 259 SELENOMETHIONINE A MSE 267 MET A MSE 276 SELENOMETHIONINE A MSE 284 MET A MSE 284 SELENOMETHIONINE A MSE 292 MET A MSE 322 SELENOMETHIONINE A MSE 330 MET A MSE 367 SELENOMETHIONINE A MSE 375 MET A MSE 369 SELENOMETHIONINE A MSE 377 MET A MSE 394 SELENOMETHIONINE A MSE 402 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_556 y,x,-z+1 crystal symmetry operation 0.0000000000 0.0000000000 90.6300000000 A O LEU 79 A O LEU 87 A N ALA 54 A N ALA 62 A O VAL 55 A O VAL 63 A N ALA 35 A N ALA 43 A O ARG 29 A O ARG 37 A N LEU 4 A N LEU 12 A N LEU 7 A N LEU 15 A O MSE 98 A O MSE 106 A N ALA 99 A N ALA 107 A O LEU 121 A O LEU 129 A N ILE 120 A N ILE 128 A O LEU 147 A O LEU 155 A O GLU 247 A O GLU 255 A N LEU 183 A N LEU 191 A N LEU 182 A N LEU 190 A O MSE 259 A O MSE 267 A N VAL 260 A N VAL 268 A O LEU 268 A O LEU 276 1 A CD ARG 29 A CD ARG 37 0 Y 1 A NE ARG 29 A NE ARG 37 0 Y 1 A CZ ARG 29 A CZ ARG 37 0 Y 1 A NH1 ARG 29 A NH1 ARG 37 0 Y 1 A NH2 ARG 29 A NH2 ARG 37 0 Y 1 A C5D NDP 401 C C5D NDP 1 1 N 1 A C4D NDP 401 C C4D NDP 1 1 N 1 A O4D NDP 401 C O4D NDP 1 1 N 1 A C3D NDP 401 C C3D NDP 1 1 N 1 A O3D NDP 401 C O3D NDP 1 1 N 1 A C2D NDP 401 C C2D NDP 1 1 N 1 A O2D NDP 401 C O2D NDP 1 1 N 1 A C1D NDP 401 C C1D NDP 1 1 N 1 A N1N NDP 401 C N1N NDP 1 1 N 1 A C2N NDP 401 C C2N NDP 1 1 N 1 A C3N NDP 401 C C3N NDP 1 1 N 1 A C7N NDP 401 C C7N NDP 1 1 N 1 A O7N NDP 401 C O7N NDP 1 1 N 1 A N7N NDP 401 C N7N NDP 1 1 N 1 A C4N NDP 401 C C4N NDP 1 1 N 1 A C5N NDP 401 C C5N NDP 1 1 N 1 A C6N NDP 401 C C6N NDP 1 1 N 1 A HIS -7 A HIS 1 1 Y 1 A HIS -6 A HIS 2 1 Y 1 A HIS -5 A HIS 3 1 Y 1 A HIS -4 A HIS 4 1 Y 1 A HIS -3 A HIS 5 1 Y 1 A HIS -2 A HIS 6 1 Y 1 A SER -1 A SER 7 1 Y 1 A GLY 0 A GLY 8 1 Y 1 A A O O HOH HOH 548 567 1.67 1 A A O O HOH HOH 545 564 2.19 1 3.80 0.50 120.30 124.10 A A A NE CZ NH2 ARG ARG ARG 29 29 29 N 1 5.72 0.90 118.30 124.02 A A A CB CG OD2 ASP ASP ASP 58 58 58 N 1 5.45 0.90 118.30 123.75 A A A CB CG OD2 ASP ASP ASP 197 197 197 N 1 A SER 258 171.60 174.72 23.8 0.212 0.187 0.189 0.189 2.20 17.62 1580 32094 31219 RANDOM 1 isotropic 6 MOLECULAR REPLACEMENT PDB ENTRY 1K5H (NADPH binding domain) Engh & Huber 2.20 17.62 265 3350 55 0 3030 1.175 0.01 0.23 2.2 20 1Q0H 32094 31221 6 6 0.129 1 7.64 3.8 97.1 0.465 2.20 2.34 1.97 1 94.5 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement REFMAC 5 Crystal structure of selenomethionine-labelled DXR in complex with fosmidomycin 1 N N 2 N N 3 N N 4 N N 5 N N The second molecule of the biological homodimer is generated by the two-fold axis. Operation x, y, z to y, x, 1-z (non-orthogonal coordinate system) A GLY 11 A GLY 19 HELX_P A ASN 24 A ASN 32 1 1 14 A ASN 38 A ASN 46 HELX_P A SER 50 A SER 58 1 2 13 A ASP 58 A ASP 66 HELX_P A GLY 73 A GLY 81 1 3 16 A GLY 81 A GLY 89 HELX_P A ALA 90 A ALA 98 1 4 10 A GLY 103 A GLY 111 HELX_P A ALA 105 A ALA 113 5 5 3 A GLY 106 A GLY 114 HELX_P A ALA 116 A ALA 124 1 6 11 A ASN 124 A ASN 132 HELX_P A SER 142 A SER 150 1 7 19 A ASP 150 A ASP 158 HELX_P A SER 159 A SER 167 1 8 10 A PRO 161 A PRO 169 HELX_P A HIS 166 A HIS 174 1 9 6 A LEU 173 A LEU 181 HELX_P A ASN 176 A ASN 184 5 10 4 A PRO 194 A PRO 202 HELX_P A MSE 201 A MSE 209 5 11 8 A THR 202 A THR 210 HELX_P A ARG 208 A ARG 216 1 12 7 A GLY 215 A GLY 223 HELX_P A THR 224 A THR 232 1 13 10 A MSE 225 A MSE 233 HELX_P A PHE 239 A PHE 247 1 14 15 A SER 242 A SER 250 HELX_P A SER 244 A SER 252 5 15 3 A MSE 276 A MSE 284 HELX_P A TRP 286 A TRP 294 1 16 11 A ASP 298 A ASP 306 HELX_P A LEU 302 A LEU 310 5 17 5 A TYR 315 A TYR 323 HELX_P A GLY 328 A GLY 336 1 18 14 A GLY 328 A GLY 336 HELX_P A ALA 348 A ALA 356 1 19 21 A THR 354 A THR 362 HELX_P A MSE 367 A MSE 375 1 20 14 A CYS 374 A CYS 382 HELX_P A LEU 396 A LEU 404 1 21 23 covale 1.335 both A MSE 1 A C MSE 9 1_555 A LYS 2 A N LYS 10 1_555 covale 1.331 both A ARG 41 A C ARG 49 1_555 A MSE 42 A N MSE 50 1_555 covale 1.331 both A MSE 42 A C MSE 50 1_555 A VAL 43 A N VAL 51 1_555 covale 1.327 both A VAL 55 A C VAL 63 1_555 A MSE 56 A N MSE 64 1_555 covale 1.328 both A MSE 56 A C MSE 64 1_555 A ASP 57 A N ASP 65 1_555 covale 1.328 both A THR 67 A C THR 75 1_555 A MSE 68 A N MSE 76 1_555 covale 1.329 both A MSE 68 A C MSE 76 1_555 A LEU 69 A N LEU 77 1_555 covale 1.331 both A ASP 87 A C ASP 95 1_555 A MSE 88 A N MSE 96 1_555 covale 1.326 both A MSE 88 A C MSE 96 1_555 A ALA 89 A N ALA 97 1_555 covale 1.329 both A VAL 97 A C VAL 105 1_555 A MSE 98 A N MSE 106 1_555 covale 1.330 both A MSE 98 A C MSE 106 1_555 A ALA 99 A N ALA 107 1_555 covale 1.330 both A PHE 135 A C PHE 143 1_555 A MSE 136 A N MSE 144 1_555 covale 1.333 both A MSE 136 A C MSE 144 1_555 A ASP 137 A N ASP 145 1_555 covale 1.328 both A THR 200 A C THR 208 1_555 A MSE 201 A N MSE 209 1_555 covale 1.330 both A MSE 201 A C MSE 209 1_555 A THR 202 A N THR 210 1_555 covale 1.327 both A SER 213 A C SER 221 1_555 A MSE 214 A N MSE 222 1_555 covale 1.328 both A MSE 214 A C MSE 222 1_555 A GLY 215 A N GLY 223 1_555 covale 1.336 both A THR 224 A C THR 232 1_555 A MSE 225 A N MSE 233 1_555 covale 1.328 both A MSE 225 A C MSE 233 1_555 A MSE 226 A N MSE 234 1_555 covale 1.334 both A MSE 226 A C MSE 234 1_555 A ASN 227 A N ASN 235 1_555 covale 1.332 both A GLN 245 A C GLN 253 1_555 A MSE 246 A N MSE 254 1_555 covale 1.324 both A MSE 246 A C MSE 254 1_555 A GLU 247 A N GLU 255 1_555 covale 1.332 both A SER 258 A C SER 266 1_555 A MSE 259 A N MSE 267 1_555 covale 1.336 both A MSE 259 A C MSE 267 1_555 A VAL 260 A N VAL 268 1_555 covale 1.328 both A ASP 275 A C ASP 283 1_555 A MSE 276 A N MSE 284 1_555 covale 1.329 both A MSE 276 A C MSE 284 1_555 A ARG 277 A N ARG 285 1_555 covale 1.327 both A THR 283 A C THR 291 1_555 A MSE 284 A N MSE 292 1_555 covale 1.334 both A MSE 284 A C MSE 292 1_555 A ALA 285 A N ALA 293 1_555 covale 1.331 both A ALA 321 A C ALA 329 1_555 A MSE 322 A N MSE 330 1_555 covale 1.327 both A MSE 322 A C MSE 330 1_555 A GLU 323 A N GLU 331 1_555 covale 1.331 both A LYS 366 A C LYS 374 1_555 A MSE 367 A N MSE 375 1_555 covale 1.328 both A MSE 367 A C MSE 375 1_555 A ASP 368 A N ASP 376 1_555 covale 1.334 both A ASP 368 A C ASP 376 1_555 A MSE 369 A N MSE 377 1_555 covale 1.330 both A MSE 369 A C MSE 377 1_555 A ARG 370 A N ARG 378 1_555 covale 1.332 both A VAL 393 A C VAL 401 1_555 A MSE 394 A N MSE 402 1_555 covale 1.391 both A MSE 394 A C MSE 402 1_555 A ARG 395 A N ARG 403 1_555 OXIDOREDUCTASE OXIDOREDUCTASE A THR 184 A THR 192 1 A GLY 185 A GLY 193 -3.24 A TRP 286 A TRP 294 1 A PRO 287 A PRO 295 4.88 DXR_ECOLI UNP 1 1 P45568 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLS GQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSL PQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFN ASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSGVKPLDFCKLSALTFAAPDYDRYPCLKL AMEAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAALNLSVLEKMDMREPQCVDDVLSVDANAREVARKEVMRLAS 1 398 1Q0H 1 398 P45568 A 1 9 406 1 expression tag HIS -7 1Q0H A P45568 UNP 1 1 expression tag HIS -6 1Q0H A P45568 UNP 2 1 expression tag HIS -5 1Q0H A P45568 UNP 3 1 expression tag HIS -4 1Q0H A P45568 UNP 4 1 expression tag HIS -3 1Q0H A P45568 UNP 5 1 expression tag HIS -2 1Q0H A P45568 UNP 6 1 expression tag SER -1 1Q0H A P45568 UNP 7 1 expression tag GLY 0 1Q0H A P45568 UNP 8 1 MET modified residue MSE 1 1Q0H A P45568 UNP 1 9 1 MET modified residue MSE 42 1Q0H A P45568 UNP 42 50 1 MET modified residue MSE 56 1Q0H A P45568 UNP 56 64 1 MET modified residue MSE 68 1Q0H A P45568 UNP 68 76 1 MET modified residue MSE 88 1Q0H A P45568 UNP 88 96 1 MET modified residue MSE 98 1Q0H A P45568 UNP 98 106 1 MET modified residue MSE 136 1Q0H A P45568 UNP 136 144 1 MET modified residue MSE 201 1Q0H A P45568 UNP 201 209 1 MET modified residue MSE 214 1Q0H A P45568 UNP 214 222 1 MET modified residue MSE 225 1Q0H A P45568 UNP 225 233 1 MET modified residue MSE 226 1Q0H A P45568 UNP 226 234 1 MET modified residue MSE 246 1Q0H A P45568 UNP 246 254 1 MET modified residue MSE 259 1Q0H A P45568 UNP 259 267 1 MET modified residue MSE 276 1Q0H A P45568 UNP 276 284 1 MET modified residue MSE 284 1Q0H A P45568 UNP 284 292 1 MET modified residue MSE 322 1Q0H A P45568 UNP 322 330 1 MET modified residue MSE 367 1Q0H A P45568 UNP 367 375 1 MET modified residue MSE 369 1Q0H A P45568 UNP 369 377 1 MET modified residue MSE 394 1Q0H A P45568 UNP 394 402 7 4 parallel parallel parallel parallel parallel parallel parallel anti-parallel anti-parallel A GLU 77 A GLU 85 A SER 80 A SER 88 A TYR 53 A TYR 61 A MSE 56 A MSE 64 A PHE 28 A PHE 36 A ALA 35 A ALA 43 A LYS 2 A LYS 10 A LEU 7 A LEU 15 A GLN 96 A GLN 104 A ALA 99 A ALA 107 A THR 119 A THR 127 A LEU 122 A LEU 130 A LEU 146 A LEU 154 A PRO 148 A PRO 156 A MSE 246 A MSE 254 A ILE 250 A ILE 258 A VAL 178 A VAL 186 A GLY 185 A GLY 193 A ILE 256 A ILE 264 A TYR 262 A TYR 270 A VAL 267 A VAL 275 A LEU 271 A LEU 279 BINDING SITE FOR RESIDUE FOM A 400 A FOM 400 Software 13 BINDING SITE FOR RESIDUE NDP A 401 A NDP 401 Software 23 BINDING SITE FOR RESIDUE CIT A 402 A CIT 402 Software 7 A SER 151 A SER 159 13 1_555 A GLU 152 A GLU 160 13 1_555 A GLY 185 A GLY 193 13 1_555 A SER 186 A SER 194 13 1_555 A HIS 209 A HIS 217 13 1_555 A SER 222 A SER 230 13 1_555 A ASN 227 A ASN 235 13 1_555 A LYS 228 A LYS 236 13 1_555 A GLU 231 A GLU 239 13 1_555 A MSE 276 A MSE 284 13 1_555 A HOH 415 E HOH 13 1_555 A HOH 464 E HOH 13 1_555 A HOH 653 E HOH 13 1_555 A GLY 8 A GLY 16 23 1_555 A THR 10 A THR 18 23 1_555 A GLY 11 A GLY 19 23 1_555 A SER 12 A SER 20 23 1_555 A ILE 13 A ILE 21 23 1_555 A ALA 35 A ALA 43 23 1_555 A GLY 36 A GLY 44 23 1_555 A LYS 37 A LYS 45 23 1_555 A ASN 38 A ASN 46 23 1_555 A ASP 57 A ASP 65 23 1_555 A ILE 101 A ILE 109 23 1_555 A VAL 102 A VAL 110 23 1_555 A MSE 214 A MSE 222 23 1_555 A GLY 215 A GLY 223 23 1_555 A ARG 216 A ARG 224 23 1_555 A LYS 217 A LYS 225 23 1_555 A HOH 413 E HOH 23 1_555 A HOH 429 E HOH 23 1_555 A HOH 559 E HOH 23 1_555 A HOH 581 E HOH 23 1_555 A HOH 587 E HOH 23 1_555 A HOH 618 E HOH 23 1_555 A HOH 647 E HOH 23 1_555 A CYS 15 A CYS 23 7 3_664 A ARG 41 A ARG 49 7 3_664 A ARG 352 A ARG 360 7 1_555 A ALA 397 A ALA 405 7 1_555 A SER 398 A SER 406 7 1_555 A HOH 483 E HOH 7 3_664 A HOH 629 E HOH 7 1_555 152 P 31 2 1