0.009162
0.005290
0.000000
0.000000
0.010580
0.000000
0.000000
0.000000
0.010955
0.00000
0.00000
0.00000
Mac Sweeney, A.
Lange, R.
D'Arcy, A.
Douangamath, A.
Surivet, J.-P.
Oefner, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
109.144
109.144
91.285
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C4 H10 N O5 P
183.100
3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID
FOSMIDOMYCIN
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C21 H30 N7 O17 P3
745.421
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
P
N
96
N
O
N
97
N
O
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
N
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
N
N
130
S
C
N
131
N
C
N
132
N
O
N
133
N
C
N
134
N
C
N
135
N
C
N
136
N
O
N
137
N
O
N
138
N
O
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
N
N
149
N
C
N
150
N
C
N
151
N
O
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
N
C
Y
163
N
C
Y
164
N
N
Y
165
N
C
Y
166
N
C
Y
167
N
N
N
168
N
O
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
N
N
183
S
C
N
184
N
C
N
185
N
O
N
186
S
C
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
O
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
N
N
205
S
C
N
206
N
C
N
207
N
O
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
N
N
227
S
C
N
228
N
C
N
229
N
O
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
N
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
S
N
258
N
C
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
S
P
N
272
N
O
N
273
N
O
N
274
N
O
N
275
N
C
N
276
R
C
N
277
N
O
N
278
R
C
N
279
N
O
N
280
R
C
N
281
N
O
N
282
R
C
Y
283
N
N
Y
284
N
C
Y
285
N
N
Y
286
N
C
Y
287
N
C
N
288
N
N
Y
289
N
N
Y
290
N
C
Y
291
N
N
Y
292
N
C
N
293
N
O
N
294
S
P
N
295
N
O
N
296
N
O
N
297
N
O
N
298
N
C
N
299
R
C
N
300
N
O
N
301
S
C
N
302
N
O
N
303
R
C
N
304
N
O
N
305
R
C
N
306
N
N
N
307
N
C
N
308
N
C
N
309
N
C
N
310
N
O
N
311
N
N
N
312
N
C
N
313
N
C
N
314
N
C
N
315
N
P
N
316
N
O
N
317
N
O
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
N
N
390
S
C
N
391
N
C
N
392
N
O
N
393
N
C
N
394
N
O
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
N
N
404
S
C
N
405
N
C
N
406
N
O
N
407
R
C
N
408
N
O
N
409
N
C
N
410
N
O
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
N
N
421
S
C
N
422
N
C
N
423
N
O
N
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
C
Y
428
N
N
Y
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
C
N
434
N
O
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
N
N
448
S
C
N
449
N
C
N
450
N
O
N
451
N
C
Y
452
N
C
Y
453
N
C
Y
454
N
C
Y
455
N
C
Y
456
N
C
Y
457
N
C
N
458
N
O
N
459
N
O
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
N
N
472
S
C
N
473
N
C
N
474
N
O
N
475
N
C
N
476
N
C
N
477
N
C
N
478
N
O
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
Y
160
N
sing
Y
161
N
doub
Y
162
N
doub
N
163
N
sing
Y
164
N
sing
N
165
N
sing
Y
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
Y
280
N
sing
Y
281
N
sing
Y
282
N
doub
N
283
N
sing
Y
284
N
sing
Y
285
N
sing
Y
286
N
doub
N
287
N
sing
Y
288
N
doub
N
289
N
sing
N
290
N
sing
Y
291
N
sing
Y
292
N
doub
N
293
N
sing
Y
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
doub
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
Y
350
N
doub
Y
351
N
sing
Y
352
N
sing
N
353
N
sing
Y
354
N
doub
N
355
N
sing
Y
356
N
doub
N
357
N
sing
Y
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
Y
419
N
doub
Y
420
N
sing
Y
421
N
sing
N
422
N
sing
Y
423
N
doub
Y
424
N
sing
Y
425
N
sing
N
426
N
sing
Y
427
N
sing
Y
428
N
doub
N
429
N
sing
Y
430
N
doub
N
431
N
sing
Y
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
doub
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
Y
447
N
doub
Y
448
N
sing
Y
449
N
sing
N
450
N
sing
Y
451
N
doub
N
452
N
sing
Y
453
N
doub
N
454
N
sing
Y
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
doub
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
345
115
127
10.1016/j.jmb.2004.10.030
15567415
The crystal structure of E.coli 1-deoxy-D-xylulose-5-phosphate reductoisomerase in a ternary complex with the antimalarial compound fosmidomycin and NADPH reveals a tight-binding closed enzyme conformation.
2005
10.2210/pdb1q0l/pdb
pdb_00001q0l
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
Osmic mirrors
IMAGE PLATE
2002-10-28
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
ENRAF-NONIUS FR571
44404.879
1-deoxy-D-xylulose 5-phosphate reductoisomerase
1.1.1.267
1
man
polymer
183.100
3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID
1
syn
non-polymer
745.421
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
1
syn
non-polymer
18.015
water
91
nat
water
DXP reductoisomerase, 1-deoxyxylulose-5-phosphate reductoisomerase, IspC
no
no
HHHHHHSGMKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQ
GSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILLANKESLVTCGRLFMDAVKQSKAQLLPVDSE
HNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEY
IEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSGVKPLDFCKLSALTFAAPDY
DRYPCLKLAMEAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAALNLSVLEKMDMREPQCVDDVLSVDANAREVARKE
VMRLAS
HHHHHHSGMKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQ
GSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILLANKESLVTCGRLFMDAVKQSKAQLLPVDSE
HNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEY
IEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSGVKPLDFCKLSALTFAAPDY
DRYPCLKLAMEAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAALNLSVLEKMDMREPQCVDDVLSVDANAREVARKE
VMRLAS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
Escherichia coli
sample
DXR
562
Escherichia coli
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PLASMID
pDS-6hisNdeI
1
3.53
65.20
Microbatch under oil
6.5
25% P3350, 200mM Li2SO4, 100mM Bis-Tris pH 6.5, Microbatch under oil, temperature 298K
298
pdbx_unobs_or_zero_occ_atoms
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_unobs_or_zero_occ_atoms
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Advisory
Data collection
Advisory
Data collection
Database references
Derived calculations
Refinement description
1
0
2004-07-20
1
1
2008-04-29
1
2
2011-07-13
1
3
2018-10-03
1
4
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal structure of selenomethionine-labelled DXR in complex with fosmidomycin
Crystal structure of DXR in complex with the substrate 1-deoxy-D-xylulose-5-phosphate
RCSB
Y
RCSB
2003-07-16
REL
REL
FOM
3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID
NDP
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
HOH
water
1K5H
PDB ENTRY 1K5H (NADPH binding domain)
PDB
experimental model
FFF
100
2
FOM
FOM
399
A
NDP
350
3
NDP
NDP
400
A
HOH
1
4
HOH
HOH
401
A
HOH
2
4
HOH
HOH
402
A
HOH
3
4
HOH
HOH
403
A
HOH
4
4
HOH
HOH
404
A
HOH
5
4
HOH
HOH
405
A
HOH
6
4
HOH
HOH
406
A
HOH
7
4
HOH
HOH
407
A
HOH
8
4
HOH
HOH
408
A
HOH
9
4
HOH
HOH
409
A
HOH
10
4
HOH
HOH
410
A
HOH
11
4
HOH
HOH
411
A
HOH
12
4
HOH
HOH
412
A
HOH
13
4
HOH
HOH
413
A
HOH
14
4
HOH
HOH
414
A
HOH
15
4
HOH
HOH
415
A
HOH
16
4
HOH
HOH
416
A
HOH
17
4
HOH
HOH
417
A
HOH
18
4
HOH
HOH
418
A
HOH
19
4
HOH
HOH
419
A
HOH
20
4
HOH
HOH
420
A
HOH
21
4
HOH
HOH
421
A
HOH
22
4
HOH
HOH
422
A
HOH
23
4
HOH
HOH
423
A
HOH
24
4
HOH
HOH
424
A
HOH
25
4
HOH
HOH
425
A
HOH
26
4
HOH
HOH
426
A
HOH
27
4
HOH
HOH
427
A
HOH
28
4
HOH
HOH
428
A
HOH
29
4
HOH
HOH
429
A
HOH
30
4
HOH
HOH
430
A
HOH
31
4
HOH
HOH
431
A
HOH
32
4
HOH
HOH
432
A
HOH
33
4
HOH
HOH
433
A
HOH
34
4
HOH
HOH
434
A
HOH
35
4
HOH
HOH
435
A
HOH
36
4
HOH
HOH
436
A
HOH
37
4
HOH
HOH
437
A
HOH
38
4
HOH
HOH
438
A
HOH
39
4
HOH
HOH
439
A
HOH
40
4
HOH
HOH
440
A
HOH
41
4
HOH
HOH
441
A
HOH
42
4
HOH
HOH
442
A
HOH
43
4
HOH
HOH
443
A
HOH
44
4
HOH
HOH
444
A
HOH
45
4
HOH
HOH
445
A
HOH
46
4
HOH
HOH
446
A
HOH
47
4
HOH
HOH
447
A
HOH
48
4
HOH
HOH
448
A
HOH
49
4
HOH
HOH
449
A
HOH
50
4
HOH
HOH
450
A
HOH
51
4
HOH
HOH
451
A
HOH
52
4
HOH
HOH
452
A
HOH
53
4
HOH
HOH
453
A
HOH
54
4
HOH
HOH
454
A
HOH
55
4
HOH
HOH
455
A
HOH
56
4
HOH
HOH
456
A
HOH
57
4
HOH
HOH
457
A
HOH
58
4
HOH
HOH
458
A
HOH
59
4
HOH
HOH
459
A
HOH
60
4
HOH
HOH
460
A
HOH
61
4
HOH
HOH
461
A
HOH
62
4
HOH
HOH
462
A
HOH
63
4
HOH
HOH
463
A
HOH
64
4
HOH
HOH
464
A
HOH
65
4
HOH
HOH
465
A
HOH
66
4
HOH
HOH
466
A
HOH
67
4
HOH
HOH
467
A
HOH
68
4
HOH
HOH
468
A
HOH
69
4
HOH
HOH
469
A
HOH
70
4
HOH
HOH
470
A
HOH
71
4
HOH
HOH
471
A
HOH
72
4
HOH
HOH
472
A
HOH
73
4
HOH
HOH
473
A
HOH
74
4
HOH
HOH
474
A
HOH
75
4
HOH
HOH
475
A
HOH
76
4
HOH
HOH
476
A
HOH
77
4
HOH
HOH
477
A
HOH
78
4
HOH
HOH
478
A
HOH
79
4
HOH
HOH
479
A
HOH
80
4
HOH
HOH
480
A
HOH
81
4
HOH
HOH
481
A
HOH
82
4
HOH
HOH
482
A
HOH
83
4
HOH
HOH
483
A
HOH
84
4
HOH
HOH
484
A
HOH
85
4
HOH
HOH
485
A
HOH
86
4
HOH
HOH
486
A
HOH
87
4
HOH
HOH
487
A
HOH
88
4
HOH
HOH
488
A
HOH
89
4
HOH
HOH
489
A
HOH
90
4
HOH
HOH
490
A
HOH
91
4
HOH
HOH
491
A
n
1
-7
A
n
2
-6
A
n
3
-5
A
n
4
-4
A
n
5
-3
A
n
6
-2
A
n
7
-1
A
n
8
0
A
MET
1
n
9
MET
1
A
LYS
2
n
10
LYS
2
A
GLN
3
n
11
GLN
3
A
LEU
4
n
12
LEU
4
A
THR
5
n
13
THR
5
A
ILE
6
n
14
ILE
6
A
LEU
7
n
15
LEU
7
A
GLY
8
n
16
GLY
8
A
SER
9
n
17
SER
9
A
THR
10
n
18
THR
10
A
GLY
11
n
19
GLY
11
A
SER
12
n
20
SER
12
A
ILE
13
n
21
ILE
13
A
GLY
14
n
22
GLY
14
A
CYS
15
n
23
CYS
15
A
SER
16
n
24
SER
16
A
THR
17
n
25
THR
17
A
LEU
18
n
26
LEU
18
A
ASP
19
n
27
ASP
19
A
VAL
20
n
28
VAL
20
A
VAL
21
n
29
VAL
21
A
ARG
22
n
30
ARG
22
A
HIS
23
n
31
HIS
23
A
ASN
24
n
32
ASN
24
A
PRO
25
n
33
PRO
25
A
GLU
26
n
34
GLU
26
A
HIS
27
n
35
HIS
27
A
PHE
28
n
36
PHE
28
A
ARG
29
n
37
ARG
29
A
VAL
30
n
38
VAL
30
A
VAL
31
n
39
VAL
31
A
ALA
32
n
40
ALA
32
A
LEU
33
n
41
LEU
33
A
VAL
34
n
42
VAL
34
A
ALA
35
n
43
ALA
35
A
GLY
36
n
44
GLY
36
A
LYS
37
n
45
LYS
37
A
ASN
38
n
46
ASN
38
A
VAL
39
n
47
VAL
39
A
THR
40
n
48
THR
40
A
ARG
41
n
49
ARG
41
A
MET
42
n
50
MET
42
A
VAL
43
n
51
VAL
43
A
GLU
44
n
52
GLU
44
A
GLN
45
n
53
GLN
45
A
CYS
46
n
54
CYS
46
A
LEU
47
n
55
LEU
47
A
GLU
48
n
56
GLU
48
A
PHE
49
n
57
PHE
49
A
SER
50
n
58
SER
50
A
PRO
51
n
59
PRO
51
A
ARG
52
n
60
ARG
52
A
TYR
53
n
61
TYR
53
A
ALA
54
n
62
ALA
54
A
VAL
55
n
63
VAL
55
A
MET
56
n
64
MET
56
A
ASP
57
n
65
ASP
57
A
ASP
58
n
66
ASP
58
A
GLU
59
n
67
GLU
59
A
ALA
60
n
68
ALA
60
A
SER
61
n
69
SER
61
A
ALA
62
n
70
ALA
62
A
LYS
63
n
71
LYS
63
A
LEU
64
n
72
LEU
64
A
LEU
65
n
73
LEU
65
A
LYS
66
n
74
LYS
66
A
THR
67
n
75
THR
67
A
MET
68
n
76
MET
68
A
LEU
69
n
77
LEU
69
A
GLN
70
n
78
GLN
70
A
GLN
71
n
79
GLN
71
A
GLN
72
n
80
GLN
72
A
GLY
73
n
81
GLY
73
A
SER
74
n
82
SER
74
A
ARG
75
n
83
ARG
75
A
THR
76
n
84
THR
76
A
GLU
77
n
85
GLU
77
A
VAL
78
n
86
VAL
78
A
LEU
79
n
87
LEU
79
A
SER
80
n
88
SER
80
A
GLY
81
n
89
GLY
81
A
GLN
82
n
90
GLN
82
A
GLN
83
n
91
GLN
83
A
ALA
84
n
92
ALA
84
A
ALA
85
n
93
ALA
85
A
CYS
86
n
94
CYS
86
A
ASP
87
n
95
ASP
87
A
MET
88
n
96
MET
88
A
ALA
89
n
97
ALA
89
A
ALA
90
n
98
ALA
90
A
LEU
91
n
99
LEU
91
A
GLU
92
n
100
GLU
92
A
ASP
93
n
101
ASP
93
A
VAL
94
n
102
VAL
94
A
ASP
95
n
103
ASP
95
A
GLN
96
n
104
GLN
96
A
VAL
97
n
105
VAL
97
A
MET
98
n
106
MET
98
A
ALA
99
n
107
ALA
99
A
ALA
100
n
108
ALA
100
A
ILE
101
n
109
ILE
101
A
VAL
102
n
110
VAL
102
A
GLY
103
n
111
GLY
103
A
ALA
104
n
112
ALA
104
A
ALA
105
n
113
ALA
105
A
GLY
106
n
114
GLY
106
A
LEU
107
n
115
LEU
107
A
LEU
108
n
116
LEU
108
A
PRO
109
n
117
PRO
109
A
THR
110
n
118
THR
110
A
LEU
111
n
119
LEU
111
A
ALA
112
n
120
ALA
112
A
ALA
113
n
121
ALA
113
A
ILE
114
n
122
ILE
114
A
ARG
115
n
123
ARG
115
A
ALA
116
n
124
ALA
116
A
GLY
117
n
125
GLY
117
A
LYS
118
n
126
LYS
118
A
THR
119
n
127
THR
119
A
ILE
120
n
128
ILE
120
A
LEU
121
n
129
LEU
121
A
LEU
122
n
130
LEU
122
A
ALA
123
n
131
ALA
123
A
ASN
124
n
132
ASN
124
A
LYS
125
n
133
LYS
125
A
GLU
126
n
134
GLU
126
A
SER
127
n
135
SER
127
A
LEU
128
n
136
LEU
128
A
VAL
129
n
137
VAL
129
A
THR
130
n
138
THR
130
A
CYS
131
n
139
CYS
131
A
GLY
132
n
140
GLY
132
A
ARG
133
n
141
ARG
133
A
LEU
134
n
142
LEU
134
A
PHE
135
n
143
PHE
135
A
MET
136
n
144
MET
136
A
ASP
137
n
145
ASP
137
A
ALA
138
n
146
ALA
138
A
VAL
139
n
147
VAL
139
A
LYS
140
n
148
LYS
140
A
GLN
141
n
149
GLN
141
A
SER
142
n
150
SER
142
A
LYS
143
n
151
LYS
143
A
ALA
144
n
152
ALA
144
A
GLN
145
n
153
GLN
145
A
LEU
146
n
154
LEU
146
A
LEU
147
n
155
LEU
147
A
PRO
148
n
156
PRO
148
A
VAL
149
n
157
VAL
149
A
ASP
150
n
158
ASP
150
A
SER
151
n
159
SER
151
A
GLU
152
n
160
GLU
152
A
HIS
153
n
161
HIS
153
A
ASN
154
n
162
ASN
154
A
ALA
155
n
163
ALA
155
A
ILE
156
n
164
ILE
156
A
PHE
157
n
165
PHE
157
A
GLN
158
n
166
GLN
158
A
SER
159
n
167
SER
159
A
LEU
160
n
168
LEU
160
A
PRO
161
n
169
PRO
161
A
GLN
162
n
170
GLN
162
A
PRO
163
n
171
PRO
163
A
ILE
164
n
172
ILE
164
A
GLN
165
n
173
GLN
165
A
HIS
166
n
174
HIS
166
A
ASN
167
n
175
ASN
167
A
LEU
168
n
176
LEU
168
A
GLY
169
n
177
GLY
169
A
TYR
170
n
178
TYR
170
A
ALA
171
n
179
ALA
171
A
ASP
172
n
180
ASP
172
A
LEU
173
n
181
LEU
173
A
GLU
174
n
182
GLU
174
A
GLN
175
n
183
GLN
175
A
ASN
176
n
184
ASN
176
A
GLY
177
n
185
GLY
177
A
VAL
178
n
186
VAL
178
A
VAL
179
n
187
VAL
179
A
SER
180
n
188
SER
180
A
ILE
181
n
189
ILE
181
A
LEU
182
n
190
LEU
182
A
LEU
183
n
191
LEU
183
A
THR
184
n
192
THR
184
A
GLY
185
n
193
GLY
185
A
SER
186
n
194
SER
186
A
GLY
187
n
195
GLY
187
A
GLY
188
n
196
GLY
188
A
PRO
189
n
197
PRO
189
A
PHE
190
n
198
PHE
190
A
ARG
191
n
199
ARG
191
A
GLU
192
n
200
GLU
192
A
THR
193
n
201
THR
193
A
PRO
194
n
202
PRO
194
A
LEU
195
n
203
LEU
195
A
ARG
196
n
204
ARG
196
A
ASP
197
n
205
ASP
197
A
LEU
198
n
206
LEU
198
A
ALA
199
n
207
ALA
199
A
THR
200
n
208
THR
200
A
MET
201
n
209
MET
201
A
THR
202
n
210
THR
202
A
PRO
203
n
211
PRO
203
A
ASP
204
n
212
ASP
204
A
GLN
205
n
213
GLN
205
A
ALA
206
n
214
ALA
206
A
CYS
207
n
215
CYS
207
A
ARG
208
n
216
ARG
208
A
HIS
209
n
217
HIS
209
A
PRO
210
n
218
PRO
210
A
ASN
211
n
219
ASN
211
A
TRP
212
n
220
TRP
212
A
SER
213
n
221
SER
213
A
MET
214
n
222
MET
214
A
GLY
215
n
223
GLY
215
A
ARG
216
n
224
ARG
216
A
LYS
217
n
225
LYS
217
A
ILE
218
n
226
ILE
218
A
SER
219
n
227
SER
219
A
VAL
220
n
228
VAL
220
A
ASP
221
n
229
ASP
221
A
SER
222
n
230
SER
222
A
ALA
223
n
231
ALA
223
A
THR
224
n
232
THR
224
A
MET
225
n
233
MET
225
A
MET
226
n
234
MET
226
A
ASN
227
n
235
ASN
227
A
LYS
228
n
236
LYS
228
A
GLY
229
n
237
GLY
229
A
LEU
230
n
238
LEU
230
A
GLU
231
n
239
GLU
231
A
TYR
232
n
240
TYR
232
A
ILE
233
n
241
ILE
233
A
GLU
234
n
242
GLU
234
A
ALA
235
n
243
ALA
235
A
ARG
236
n
244
ARG
236
A
TRP
237
n
245
TRP
237
A
LEU
238
n
246
LEU
238
A
PHE
239
n
247
PHE
239
A
ASN
240
n
248
ASN
240
A
ALA
241
n
249
ALA
241
A
SER
242
n
250
SER
242
A
ALA
243
n
251
ALA
243
A
SER
244
n
252
SER
244
A
GLN
245
n
253
GLN
245
A
MET
246
n
254
MET
246
A
GLU
247
n
255
GLU
247
A
VAL
248
n
256
VAL
248
A
LEU
249
n
257
LEU
249
A
ILE
250
n
258
ILE
250
A
HIS
251
n
259
HIS
251
A
PRO
252
n
260
PRO
252
A
GLN
253
n
261
GLN
253
A
SER
254
n
262
SER
254
A
VAL
255
n
263
VAL
255
A
ILE
256
n
264
ILE
256
A
HIS
257
n
265
HIS
257
A
SER
258
n
266
SER
258
A
MET
259
n
267
MET
259
A
VAL
260
n
268
VAL
260
A
ARG
261
n
269
ARG
261
A
TYR
262
n
270
TYR
262
A
GLN
263
n
271
GLN
263
A
ASP
264
n
272
ASP
264
A
GLY
265
n
273
GLY
265
A
SER
266
n
274
SER
266
A
VAL
267
n
275
VAL
267
A
LEU
268
n
276
LEU
268
A
ALA
269
n
277
ALA
269
A
GLN
270
n
278
GLN
270
A
LEU
271
n
279
LEU
271
A
GLY
272
n
280
GLY
272
A
GLU
273
n
281
GLU
273
A
PRO
274
n
282
PRO
274
A
ASP
275
n
283
ASP
275
A
MET
276
n
284
MET
276
A
ARG
277
n
285
ARG
277
A
THR
278
n
286
THR
278
A
PRO
279
n
287
PRO
279
A
ILE
280
n
288
ILE
280
A
ALA
281
n
289
ALA
281
A
HIS
282
n
290
HIS
282
A
THR
283
n
291
THR
283
A
MET
284
n
292
MET
284
A
ALA
285
n
293
ALA
285
A
TRP
286
n
294
TRP
286
A
PRO
287
n
295
PRO
287
A
ASN
288
n
296
ASN
288
A
ARG
289
n
297
ARG
289
A
VAL
290
n
298
VAL
290
A
ASN
291
n
299
ASN
291
A
SER
292
n
300
SER
292
A
GLY
293
n
301
GLY
293
A
VAL
294
n
302
VAL
294
A
LYS
295
n
303
LYS
295
A
PRO
296
n
304
PRO
296
A
LEU
297
n
305
LEU
297
A
ASP
298
n
306
ASP
298
A
PHE
299
n
307
PHE
299
A
CYS
300
n
308
CYS
300
A
LYS
301
n
309
LYS
301
A
LEU
302
n
310
LEU
302
A
SER
303
n
311
SER
303
A
ALA
304
n
312
ALA
304
A
LEU
305
n
313
LEU
305
A
THR
306
n
314
THR
306
A
PHE
307
n
315
PHE
307
A
ALA
308
n
316
ALA
308
A
ALA
309
n
317
ALA
309
A
PRO
310
n
318
PRO
310
A
ASP
311
n
319
ASP
311
A
TYR
312
n
320
TYR
312
A
ASP
313
n
321
ASP
313
A
ARG
314
n
322
ARG
314
A
TYR
315
n
323
TYR
315
A
PRO
316
n
324
PRO
316
A
CYS
317
n
325
CYS
317
A
LEU
318
n
326
LEU
318
A
LYS
319
n
327
LYS
319
A
LEU
320
n
328
LEU
320
A
ALA
321
n
329
ALA
321
A
MET
322
n
330
MET
322
A
GLU
323
n
331
GLU
323
A
ALA
324
n
332
ALA
324
A
PHE
325
n
333
PHE
325
A
GLU
326
n
334
GLU
326
A
GLN
327
n
335
GLN
327
A
GLY
328
n
336
GLY
328
A
GLN
329
n
337
GLN
329
A
ALA
330
n
338
ALA
330
A
ALA
331
n
339
ALA
331
A
THR
332
n
340
THR
332
A
THR
333
n
341
THR
333
A
ALA
334
n
342
ALA
334
A
LEU
335
n
343
LEU
335
A
ASN
336
n
344
ASN
336
A
ALA
337
n
345
ALA
337
A
ALA
338
n
346
ALA
338
A
ASN
339
n
347
ASN
339
A
GLU
340
n
348
GLU
340
A
ILE
341
n
349
ILE
341
A
THR
342
n
350
THR
342
A
VAL
343
n
351
VAL
343
A
ALA
344
n
352
ALA
344
A
ALA
345
n
353
ALA
345
A
PHE
346
n
354
PHE
346
A
LEU
347
n
355
LEU
347
A
ALA
348
n
356
ALA
348
A
GLN
349
n
357
GLN
349
A
GLN
350
n
358
GLN
350
A
ILE
351
n
359
ILE
351
A
ARG
352
n
360
ARG
352
A
PHE
353
n
361
PHE
353
A
THR
354
n
362
THR
354
A
ASP
355
n
363
ASP
355
A
ILE
356
n
364
ILE
356
A
ALA
357
n
365
ALA
357
A
ALA
358
n
366
ALA
358
A
LEU
359
n
367
LEU
359
A
ASN
360
n
368
ASN
360
A
LEU
361
n
369
LEU
361
A
SER
362
n
370
SER
362
A
VAL
363
n
371
VAL
363
A
LEU
364
n
372
LEU
364
A
GLU
365
n
373
GLU
365
A
LYS
366
n
374
LYS
366
A
MET
367
n
375
MET
367
A
ASP
368
n
376
ASP
368
A
MET
369
n
377
MET
369
A
ARG
370
n
378
ARG
370
A
GLU
371
n
379
GLU
371
A
PRO
372
n
380
PRO
372
A
GLN
373
n
381
GLN
373
A
CYS
374
n
382
CYS
374
A
VAL
375
n
383
VAL
375
A
ASP
376
n
384
ASP
376
A
ASP
377
n
385
ASP
377
A
VAL
378
n
386
VAL
378
A
LEU
379
n
387
LEU
379
A
SER
380
n
388
SER
380
A
VAL
381
n
389
VAL
381
A
ASP
382
n
390
ASP
382
A
ALA
383
n
391
ALA
383
A
ASN
384
n
392
ASN
384
A
ALA
385
n
393
ALA
385
A
ARG
386
n
394
ARG
386
A
GLU
387
n
395
GLU
387
A
VAL
388
n
396
VAL
388
A
ALA
389
n
397
ALA
389
A
ARG
390
n
398
ARG
390
A
LYS
391
n
399
LYS
391
A
GLU
392
n
400
GLU
392
A
VAL
393
n
401
VAL
393
A
MET
394
n
402
MET
394
A
ARG
395
n
403
ARG
395
A
LEU
396
n
404
LEU
396
A
ALA
397
n
405
ALA
397
A
SER
398
n
406
SER
398
A
author_and_software_defined_assembly
PISA,PQS
2
dimeric
6670
-39
30340
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_556
y,x,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
91.2850000000
A
O
LEU
79
A
O
LEU
87
A
N
ALA
54
A
N
ALA
62
A
O
VAL
55
A
O
VAL
63
A
N
LEU
33
A
N
LEU
41
A
O
ARG
29
A
O
ARG
37
A
N
LEU
4
A
N
LEU
12
A
N
LEU
7
A
N
LEU
15
A
O
MET
98
A
O
MET
106
A
N
VAL
97
A
N
VAL
105
A
O
THR
119
A
O
THR
127
A
N
ILE
120
A
N
ILE
128
A
O
LEU
147
A
O
LEU
155
A
O
LEU
249
A
O
LEU
257
A
N
LEU
183
A
N
LEU
191
A
N
LEU
182
A
N
LEU
190
A
O
MET
259
A
O
MET
267
A
N
VAL
260
A
N
VAL
268
A
O
LEU
268
A
O
LEU
276
1
A
CD
ARG
29
A
CD
ARG
37
0
Y
1
A
NE
ARG
29
A
NE
ARG
37
0
Y
1
A
CZ
ARG
29
A
CZ
ARG
37
0
Y
1
A
NH1
ARG
29
A
NH1
ARG
37
0
Y
1
A
NH2
ARG
29
A
NH2
ARG
37
0
Y
1
A
HIS
-7
A
HIS
1
1
Y
1
A
HIS
-6
A
HIS
2
1
Y
1
A
HIS
-5
A
HIS
3
1
Y
1
A
HIS
-4
A
HIS
4
1
Y
1
A
HIS
-3
A
HIS
5
1
Y
1
A
HIS
-2
A
HIS
6
1
Y
1
A
SER
-1
A
SER
7
1
Y
1
A
GLY
0
A
GLY
8
1
Y
1
18.29
2.10
111.80
130.09
A
A
A
CG
CD
NE
ARG
ARG
ARG
29
29
29
N
1
5.49
0.90
118.30
123.79
A
A
A
CB
CG
OD2
ASP
ASP
ASP
264
264
264
N
1
A
SER
50
37.57
66.30
1
A
SER
258
162.88
166.53
25.5
0.26
0.21
0.21
2.65
20
943
18739
18433
RANDOM
1
isotropic
THROUGHOUT
6
6
MOLECULAR REPLACEMENT
PDB ENTRY 1K5H (NADPH binding domain)
Engh & Huber
2.65
20
91
3180
59
0
3030
1.063
0.007
2.65
20
1Q0L
18739
18451
6
6
0.143
1
12.1
6.8
99.2
0.44
2.65
2.82
2.98
1
95.5
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
REFMAC
5.1
Crystal structure of DXR in complex with fosmidomycin
1
N
N
2
N
N
3
N
N
4
N
N
The second molecule of the biological homodimer is generated by the two-fold axis. Operation x, y, z to y, x, 1-z (non-orthogonal coordinate system)
A
GLY
11
A
GLY
19
HELX_P
A
HIS
23
A
HIS
31
1
1
13
A
ASN
38
A
ASN
46
HELX_P
A
SER
50
A
SER
58
1
2
13
A
ASP
58
A
ASP
66
HELX_P
A
GLY
73
A
GLY
81
1
3
16
A
GLY
81
A
GLY
89
HELX_P
A
ALA
89
A
ALA
97
1
4
9
A
GLY
103
A
GLY
111
HELX_P
A
ALA
105
A
ALA
113
5
5
3
A
GLY
106
A
GLY
114
HELX_P
A
ALA
116
A
ALA
124
1
6
11
A
ASN
124
A
ASN
132
HELX_P
A
GLY
132
A
GLY
140
1
7
9
A
GLY
132
A
GLY
140
HELX_P
A
SER
142
A
SER
150
1
8
11
A
ASP
150
A
ASP
158
HELX_P
A
SER
159
A
SER
167
1
9
10
A
PRO
161
A
PRO
169
HELX_P
A
HIS
166
A
HIS
174
1
10
6
A
LEU
173
A
LEU
181
HELX_P
A
ASN
176
A
ASN
184
5
11
4
A
PRO
194
A
PRO
202
HELX_P
A
MET
201
A
MET
209
5
12
8
A
THR
202
A
THR
210
HELX_P
A
CYS
207
A
CYS
215
1
13
6
A
GLY
215
A
GLY
223
HELX_P
A
MET
225
A
MET
233
1
14
11
A
MET
225
A
MET
233
HELX_P
A
PHE
239
A
PHE
247
1
15
15
A
SER
242
A
SER
250
HELX_P
A
SER
244
A
SER
252
5
16
3
A
MET
276
A
MET
284
HELX_P
A
TRP
286
A
TRP
294
1
17
11
A
ASP
298
A
ASP
306
HELX_P
A
LEU
302
A
LEU
310
5
18
5
A
TYR
315
A
TYR
323
HELX_P
A
GLY
328
A
GLY
336
1
19
14
A
GLY
328
A
GLY
336
HELX_P
A
ALA
348
A
ALA
356
1
20
21
A
THR
354
A
THR
362
HELX_P
A
MET
367
A
MET
375
1
21
14
A
CYS
374
A
CYS
382
HELX_P
A
ARG
395
A
ARG
403
1
22
22
OXIDOREDUCTASE
OXIDOREDUCTASE
A
THR
184
A
THR
192
1
A
GLY
185
A
GLY
193
5.19
A
TRP
286
A
TRP
294
1
A
PRO
287
A
PRO
295
2.68
DXR_ECOLI
UNP
1
1
P45568
MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLS
GQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSL
PQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFN
ASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSGVKPLDFCKLSALTFAAPDYDRYPCLKL
AMEAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAALNLSVLEKMDMREPQCVDDVLSVDANAREVARKEVMRLAS
1
398
1Q0L
1
398
P45568
A
1
9
406
1
expression tag
HIS
-7
1Q0L
A
P45568
UNP
1
1
expression tag
HIS
-6
1Q0L
A
P45568
UNP
2
1
expression tag
HIS
-5
1Q0L
A
P45568
UNP
3
1
expression tag
HIS
-4
1Q0L
A
P45568
UNP
4
1
expression tag
HIS
-3
1Q0L
A
P45568
UNP
5
1
expression tag
HIS
-2
1Q0L
A
P45568
UNP
6
1
expression tag
SER
-1
1Q0L
A
P45568
UNP
7
1
expression tag
GLY
0
1Q0L
A
P45568
UNP
8
7
4
parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
A
GLU
77
A
GLU
85
A
SER
80
A
SER
88
A
TYR
53
A
TYR
61
A
MET
56
A
MET
64
A
PHE
28
A
PHE
36
A
ALA
35
A
ALA
43
A
LYS
2
A
LYS
10
A
LEU
7
A
LEU
15
A
GLN
96
A
GLN
104
A
ALA
99
A
ALA
107
A
THR
119
A
THR
127
A
LEU
122
A
LEU
130
A
LEU
146
A
LEU
154
A
PRO
148
A
PRO
156
A
MET
246
A
MET
254
A
LEU
249
A
LEU
257
A
VAL
178
A
VAL
186
A
THR
184
A
THR
192
A
ILE
256
A
ILE
264
A
TYR
262
A
TYR
270
A
VAL
267
A
VAL
275
A
LEU
271
A
LEU
279
BINDING SITE FOR RESIDUE FOM A 399
A
FOM
399
Software
14
BINDING SITE FOR RESIDUE NDP A 400
A
NDP
400
Software
27
A
SER
151
A
SER
159
14
1_555
A
GLU
152
A
GLU
160
14
1_555
A
GLY
185
A
GLY
193
14
1_555
A
SER
186
A
SER
194
14
1_555
A
GLY
187
A
GLY
195
14
1_555
A
ILE
218
A
ILE
226
14
1_555
A
SER
222
A
SER
230
14
1_555
A
ASN
227
A
ASN
235
14
1_555
A
LYS
228
A
LYS
236
14
1_555
A
GLU
231
A
GLU
239
14
1_555
A
NDP
400
C
NDP
14
1_555
A
HOH
422
D
HOH
14
1_555
A
HOH
433
D
HOH
14
1_555
A
HOH
434
D
HOH
14
1_555
A
GLY
8
A
GLY
16
27
1_555
A
THR
10
A
THR
18
27
1_555
A
GLY
11
A
GLY
19
27
1_555
A
SER
12
A
SER
20
27
1_555
A
ILE
13
A
ILE
21
27
1_555
A
ALA
35
A
ALA
43
27
1_555
A
GLY
36
A
GLY
44
27
1_555
A
LYS
37
A
LYS
45
27
1_555
A
ASN
38
A
ASN
46
27
1_555
A
ASP
57
A
ASP
65
27
1_555
A
ALA
100
A
ALA
108
27
1_555
A
ILE
101
A
ILE
109
27
1_555
A
VAL
102
A
VAL
110
27
1_555
A
ALA
105
A
ALA
113
27
1_555
A
ALA
123
A
ALA
131
27
1_555
A
ASN
124
A
ASN
132
27
1_555
A
LYS
125
A
LYS
133
27
1_555
A
GLU
126
A
GLU
134
27
1_555
A
ASP
150
A
ASP
158
27
1_555
A
MET
214
A
MET
222
27
1_555
A
GLY
215
A
GLY
223
27
1_555
A
ILE
218
A
ILE
226
27
1_555
A
MET
276
A
MET
284
27
1_555
A
FOM
399
B
FOM
27
1_555
A
HOH
403
D
HOH
27
1_555
A
HOH
460
D
HOH
27
1_555
A
HOH
483
D
HOH
27
1_555
152
P 31 2 1