0.010591
0.000000
0.000000
0.000000
0.008275
0.000000
0.000000
0.000000
0.020809
0.00000
0.00000
0.00000
Yoon, H.J.
Lee, S.K.
Kim, H.L.
Kim, H.W.
Kim, H.W.
Lee, J.Y.
Mikami, B.
Suh, S.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
94.417
120.844
48.057
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C19 H35 N3 O5
385.498
ACTINONIN
2-[(FORMYL-HYDROXY-AMINO)-METHYL]-HEPTANOIC ACID [1-(2-HYDROXYMETHYL-PYRROLIDINE-1-CARBONYL)-2-METHYL-PROPYL]-AMIDE
non-polymer
C3 H7 N O4 S
153.157
n
3-SULFINOALANINE
S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
Proteins
PSFGEY
0867
0887-3585
57
639
642
10.1002/prot.20231
15382235
Crystal structure of peptide deformylase from Staphylococcus aureus in complex with actinonin, a naturally occurring antibacterial agent
2004
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
2003-06-21
RIGAKU RAXIS IV
SINGLE WAVELENGTH
M
x-ray
1
1.072
1.0
BL38B1
SPring-8
1.072
SYNCHROTRON
SPRING-8 BEAMLINE BL38B1
21692.713
Peptide deformylase
3.5.1.88
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
385.498
ACTINONIN
1
syn
non-polymer
18.015
water
249
nat
water
PDF
no
yes
MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDD
GSGKSYDYMLVNPKIVSHSVQEAYLPTGEG(CSD)LSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEI
DHLNGVMFYDHIDKDHPLQPHTDAVEVLEHHHHHH
MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDD
GSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLN
GVMFYDHIDKDHPLQPHTDAVEVLEHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Staphylococcus
Escherichia
sample
SA1100
1280
Staphylococcus aureus
562
Escherichia coli
SA113
plasmid
pET-21a
2.80
55.69
VAPOR DIFFUSION, HANGING DROP
8.5
PEG4000, MgCl2, Tris-HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 296K
296
repository
Initial release
Version format compliance
Version format compliance
Other
Version format compliance
1
0
2004-07-23
1
1
2008-04-29
1
2
2011-07-13
1
3
2017-02-08
RCSB
Y
PDBJ
2003-07-23
REL
REL
ZN
ZINC ION
BB2
ACTINONIN
HOH
water
ZN2
350
2
ZN
ZN
350
A
ACT
301
3
BB2
BB2
301
A
TIP
501
4
HOH
HOH
501
A
TIP
502
4
HOH
HOH
502
A
TIP
503
4
HOH
HOH
503
A
TIP
504
4
HOH
HOH
504
A
TIP
505
4
HOH
HOH
505
A
TIP
506
4
HOH
HOH
506
A
TIP
507
4
HOH
HOH
507
A
TIP
508
4
HOH
HOH
508
A
TIP
509
4
HOH
HOH
509
A
TIP
510
4
HOH
HOH
510
A
TIP
511
4
HOH
HOH
511
A
TIP
512
4
HOH
HOH
512
A
TIP
513
4
HOH
HOH
513
A
TIP
514
4
HOH
HOH
514
A
TIP
515
4
HOH
HOH
515
A
TIP
516
4
HOH
HOH
516
A
TIP
517
4
HOH
HOH
517
A
TIP
518
4
HOH
HOH
518
A
TIP
519
4
HOH
HOH
519
A
TIP
520
4
HOH
HOH
520
A
TIP
521
4
HOH
HOH
521
A
TIP
522
4
HOH
HOH
522
A
TIP
523
4
HOH
HOH
523
A
TIP
524
4
HOH
HOH
524
A
TIP
525
4
HOH
HOH
525
A
TIP
526
4
HOH
HOH
526
A
TIP
527
4
HOH
HOH
527
A
TIP
528
4
HOH
HOH
528
A
TIP
530
4
HOH
HOH
530
A
TIP
531
4
HOH
HOH
531
A
TIP
532
4
HOH
HOH
532
A
TIP
533
4
HOH
HOH
533
A
TIP
534
4
HOH
HOH
534
A
TIP
535
4
HOH
HOH
535
A
TIP
536
4
HOH
HOH
536
A
TIP
537
4
HOH
HOH
537
A
TIP
538
4
HOH
HOH
538
A
TIP
539
4
HOH
HOH
539
A
TIP
540
4
HOH
HOH
540
A
TIP
541
4
HOH
HOH
541
A
TIP
542
4
HOH
HOH
542
A
TIP
543
4
HOH
HOH
543
A
TIP
544
4
HOH
HOH
544
A
TIP
545
4
HOH
HOH
545
A
TIP
546
4
HOH
HOH
546
A
TIP
547
4
HOH
HOH
547
A
TIP
548
4
HOH
HOH
548
A
TIP
549
4
HOH
HOH
549
A
TIP
550
4
HOH
HOH
550
A
TIP
551
4
HOH
HOH
551
A
TIP
552
4
HOH
HOH
552
A
TIP
553
4
HOH
HOH
553
A
TIP
554
4
HOH
HOH
554
A
TIP
556
4
HOH
HOH
556
A
TIP
557
4
HOH
HOH
557
A
TIP
558
4
HOH
HOH
558
A
TIP
560
4
HOH
HOH
560
A
TIP
561
4
HOH
HOH
561
A
TIP
562
4
HOH
HOH
562
A
TIP
563
4
HOH
HOH
563
A
TIP
564
4
HOH
HOH
564
A
TIP
565
4
HOH
HOH
565
A
TIP
567
4
HOH
HOH
567
A
TIP
568
4
HOH
HOH
568
A
TIP
569
4
HOH
HOH
569
A
TIP
570
4
HOH
HOH
570
A
TIP
571
4
HOH
HOH
571
A
TIP
572
4
HOH
HOH
572
A
TIP
573
4
HOH
HOH
573
A
TIP
574
4
HOH
HOH
574
A
TIP
575
4
HOH
HOH
575
A
TIP
577
4
HOH
HOH
577
A
TIP
578
4
HOH
HOH
578
A
TIP
579
4
HOH
HOH
579
A
TIP
580
4
HOH
HOH
580
A
TIP
581
4
HOH
HOH
581
A
TIP
582
4
HOH
HOH
582
A
TIP
583
4
HOH
HOH
583
A
TIP
584
4
HOH
HOH
584
A
TIP
585
4
HOH
HOH
585
A
TIP
586
4
HOH
HOH
586
A
TIP
587
4
HOH
HOH
587
A
TIP
588
4
HOH
HOH
588
A
TIP
589
4
HOH
HOH
589
A
TIP
590
4
HOH
HOH
590
A
TIP
591
4
HOH
HOH
591
A
TIP
592
4
HOH
HOH
592
A
TIP
593
4
HOH
HOH
593
A
TIP
594
4
HOH
HOH
594
A
TIP
595
4
HOH
HOH
595
A
TIP
596
4
HOH
HOH
596
A
TIP
597
4
HOH
HOH
597
A
TIP
598
4
HOH
HOH
598
A
TIP
600
4
HOH
HOH
600
A
TIP
601
4
HOH
HOH
601
A
TIP
602
4
HOH
HOH
602
A
TIP
603
4
HOH
HOH
603
A
TIP
604
4
HOH
HOH
604
A
TIP
605
4
HOH
HOH
605
A
TIP
606
4
HOH
HOH
606
A
TIP
607
4
HOH
HOH
607
A
TIP
608
4
HOH
HOH
608
A
TIP
609
4
HOH
HOH
609
A
TIP
610
4
HOH
HOH
610
A
TIP
611
4
HOH
HOH
611
A
TIP
612
4
HOH
HOH
612
A
TIP
613
4
HOH
HOH
613
A
TIP
614
4
HOH
HOH
614
A
TIP
615
4
HOH
HOH
615
A
TIP
617
4
HOH
HOH
617
A
TIP
618
4
HOH
HOH
618
A
TIP
619
4
HOH
HOH
619
A
TIP
620
4
HOH
HOH
620
A
TIP
622
4
HOH
HOH
622
A
TIP
623
4
HOH
HOH
623
A
TIP
624
4
HOH
HOH
624
A
TIP
626
4
HOH
HOH
626
A
TIP
627
4
HOH
HOH
627
A
TIP
628
4
HOH
HOH
628
A
TIP
629
4
HOH
HOH
629
A
TIP
630
4
HOH
HOH
630
A
TIP
631
4
HOH
HOH
631
A
TIP
632
4
HOH
HOH
632
A
TIP
633
4
HOH
HOH
633
A
TIP
634
4
HOH
HOH
634
A
TIP
635
4
HOH
HOH
635
A
TIP
636
4
HOH
HOH
636
A
TIP
637
4
HOH
HOH
637
A
TIP
638
4
HOH
HOH
638
A
TIP
639
4
HOH
HOH
639
A
TIP
640
4
HOH
HOH
640
A
TIP
641
4
HOH
HOH
641
A
TIP
642
4
HOH
HOH
642
A
TIP
643
4
HOH
HOH
643
A
TIP
644
4
HOH
HOH
644
A
TIP
645
4
HOH
HOH
645
A
TIP
646
4
HOH
HOH
646
A
TIP
647
4
HOH
HOH
647
A
TIP
648
4
HOH
HOH
648
A
TIP
649
4
HOH
HOH
649
A
TIP
650
4
HOH
HOH
650
A
TIP
651
4
HOH
HOH
651
A
TIP
652
4
HOH
HOH
652
A
TIP
653
4
HOH
HOH
653
A
TIP
654
4
HOH
HOH
654
A
TIP
655
4
HOH
HOH
655
A
TIP
656
4
HOH
HOH
656
A
TIP
657
4
HOH
HOH
657
A
TIP
658
4
HOH
HOH
658
A
TIP
660
4
HOH
HOH
660
A
TIP
661
4
HOH
HOH
661
A
TIP
662
4
HOH
HOH
662
A
TIP
665
4
HOH
HOH
665
A
TIP
667
4
HOH
HOH
667
A
TIP
668
4
HOH
HOH
668
A
TIP
670
4
HOH
HOH
670
A
TIP
671
4
HOH
HOH
671
A
TIP
672
4
HOH
HOH
672
A
TIP
673
4
HOH
HOH
673
A
TIP
674
4
HOH
HOH
674
A
TIP
675
4
HOH
HOH
675
A
TIP
676
4
HOH
HOH
676
A
TIP
677
4
HOH
HOH
677
A
TIP
678
4
HOH
HOH
678
A
TIP
679
4
HOH
HOH
679
A
TIP
680
4
HOH
HOH
680
A
TIP
681
4
HOH
HOH
681
A
TIP
682
4
HOH
HOH
682
A
TIP
683
4
HOH
HOH
683
A
TIP
684
4
HOH
HOH
684
A
TIP
685
4
HOH
HOH
685
A
TIP
686
4
HOH
HOH
686
A
TIP
687
4
HOH
HOH
687
A
TIP
688
4
HOH
HOH
688
A
TIP
689
4
HOH
HOH
689
A
TIP
690
4
HOH
HOH
690
A
TIP
691
4
HOH
HOH
691
A
TIP
692
4
HOH
HOH
692
A
TIP
693
4
HOH
HOH
693
A
TIP
694
4
HOH
HOH
694
A
TIP
695
4
HOH
HOH
695
A
TIP
696
4
HOH
HOH
696
A
TIP
697
4
HOH
HOH
697
A
TIP
698
4
HOH
HOH
698
A
TIP
699
4
HOH
HOH
699
A
TIP
700
4
HOH
HOH
700
A
TIP
701
4
HOH
HOH
701
A
TIP
702
4
HOH
HOH
702
A
TIP
703
4
HOH
HOH
703
A
TIP
704
4
HOH
HOH
704
A
TIP
705
4
HOH
HOH
705
A
TIP
706
4
HOH
HOH
706
A
TIP
707
4
HOH
HOH
707
A
TIP
708
4
HOH
HOH
708
A
TIP
709
4
HOH
HOH
709
A
TIP
710
4
HOH
HOH
710
A
TIP
711
4
HOH
HOH
711
A
TIP
712
4
HOH
HOH
712
A
TIP
713
4
HOH
HOH
713
A
TIP
714
4
HOH
HOH
714
A
TIP
715
4
HOH
HOH
715
A
TIP
716
4
HOH
HOH
716
A
TIP
717
4
HOH
HOH
717
A
TIP
718
4
HOH
HOH
718
A
TIP
719
4
HOH
HOH
719
A
TIP
720
4
HOH
HOH
720
A
TIP
721
4
HOH
HOH
721
A
TIP
722
4
HOH
HOH
722
A
TIP
723
4
HOH
HOH
723
A
TIP
724
4
HOH
HOH
724
A
TIP
725
4
HOH
HOH
725
A
TIP
726
4
HOH
HOH
726
A
TIP
727
4
HOH
HOH
727
A
TIP
730
4
HOH
HOH
730
A
TIP
731
4
HOH
HOH
731
A
TIP
732
4
HOH
HOH
732
A
TIP
733
4
HOH
HOH
733
A
TIP
734
4
HOH
HOH
734
A
TIP
735
4
HOH
HOH
735
A
TIP
736
4
HOH
HOH
736
A
TIP
737
4
HOH
HOH
737
A
TIP
738
4
HOH
HOH
738
A
TIP
739
4
HOH
HOH
739
A
TIP
740
4
HOH
HOH
740
A
TIP
742
4
HOH
HOH
742
A
TIP
743
4
HOH
HOH
743
A
TIP
744
4
HOH
HOH
744
A
TIP
745
4
HOH
HOH
745
A
TIP
746
4
HOH
HOH
746
A
TIP
747
4
HOH
HOH
747
A
TIP
748
4
HOH
HOH
748
A
TIP
749
4
HOH
HOH
749
A
TIP
750
4
HOH
HOH
750
A
TIP
752
4
HOH
HOH
752
A
TIP
753
4
HOH
HOH
753
A
TIP
754
4
HOH
HOH
754
A
TIP
755
4
HOH
HOH
755
A
TIP
756
4
HOH
HOH
756
A
TIP
757
4
HOH
HOH
757
A
TIP
758
4
HOH
HOH
758
A
TIP
759
4
HOH
HOH
759
A
TIP
760
4
HOH
HOH
760
A
TIP
761
4
HOH
HOH
761
A
TIP
762
4
HOH
HOH
762
A
TIP
764
4
HOH
HOH
764
A
TIP
765
4
HOH
HOH
765
A
TIP
766
4
HOH
HOH
766
A
TIP
767
4
HOH
HOH
767
A
TIP
768
4
HOH
HOH
768
A
MET
1
n
1
MET
1
A
LEU
2
n
2
LEU
2
A
THR
3
n
3
THR
3
A
MET
4
n
4
MET
4
A
LYS
5
n
5
LYS
5
A
ASP
6
n
6
ASP
6
A
ILE
7
n
7
ILE
7
A
ILE
8
n
8
ILE
8
A
ARG
9
n
9
ARG
9
A
ASP
10
n
10
ASP
10
A
GLY
11
n
11
GLY
11
A
HIS
12
n
12
HIS
12
A
PRO
13
n
13
PRO
13
A
THR
14
n
14
THR
14
A
LEU
15
n
15
LEU
15
A
ARG
16
n
16
ARG
16
A
GLN
17
n
17
GLN
17
A
LYS
18
n
18
LYS
18
A
ALA
19
n
19
ALA
19
A
ALA
20
n
20
ALA
20
A
GLU
21
n
21
GLU
21
A
LEU
22
n
22
LEU
22
A
GLU
23
n
23
GLU
23
A
LEU
24
n
24
LEU
24
A
PRO
25
n
25
PRO
25
A
LEU
26
n
26
LEU
26
A
THR
27
n
27
THR
27
A
LYS
28
n
28
LYS
28
A
GLU
29
n
29
GLU
29
A
GLU
30
n
30
GLU
30
A
LYS
31
n
31
LYS
31
A
GLU
32
n
32
GLU
32
A
THR
33
n
33
THR
33
A
LEU
34
n
34
LEU
34
A
ILE
35
n
35
ILE
35
A
ALA
36
n
36
ALA
36
A
MET
37
n
37
MET
37
A
ARG
38
n
38
ARG
38
A
GLU
39
n
39
GLU
39
A
PHE
40
n
40
PHE
40
A
LEU
41
n
41
LEU
41
A
VAL
42
n
42
VAL
42
A
ASN
43
n
43
ASN
43
A
SER
44
n
44
SER
44
A
GLN
45
n
45
GLN
45
A
ASP
46
n
46
ASP
46
A
GLU
47
n
47
GLU
47
A
GLU
48
n
48
GLU
48
A
ILE
49
n
49
ILE
49
A
ALA
50
n
50
ALA
50
A
LYS
51
n
51
LYS
51
A
ARG
52
n
52
ARG
52
A
TYR
53
n
53
TYR
53
A
GLY
54
n
54
GLY
54
A
LEU
55
n
55
LEU
55
A
ARG
56
n
56
ARG
56
A
SER
57
n
57
SER
57
A
GLY
58
n
58
GLY
58
A
VAL
59
n
59
VAL
59
A
GLY
60
n
60
GLY
60
A
LEU
61
n
61
LEU
61
A
ALA
62
n
62
ALA
62
A
ALA
63
n
63
ALA
63
A
PRO
64
n
64
PRO
64
A
GLN
65
n
65
GLN
65
A
ILE
66
n
66
ILE
66
A
ASN
67
n
67
ASN
67
A
ILE
68
n
68
ILE
68
A
SER
69
n
69
SER
69
A
LYS
70
n
70
LYS
70
A
ARG
71
n
71
ARG
71
A
MET
72
n
72
MET
72
A
ILE
73
n
73
ILE
73
A
ALA
74
n
74
ALA
74
A
VAL
75
n
75
VAL
75
A
LEU
76
n
76
LEU
76
A
ILE
77
n
77
ILE
77
A
PRO
78
n
78
PRO
78
A
ASP
79
n
79
ASP
79
A
ASP
80
n
80
ASP
80
A
GLY
81
n
81
GLY
81
A
SER
82
n
82
SER
82
A
GLY
83
n
83
GLY
83
A
LYS
84
n
84
LYS
84
A
SER
85
n
85
SER
85
A
TYR
86
n
86
TYR
86
A
ASP
87
n
87
ASP
87
A
TYR
88
n
88
TYR
88
A
MET
89
n
89
MET
89
A
LEU
90
n
90
LEU
90
A
VAL
91
n
91
VAL
91
A
ASN
92
n
92
ASN
92
A
PRO
93
n
93
PRO
93
A
LYS
94
n
94
LYS
94
A
ILE
95
n
95
ILE
95
A
VAL
96
n
96
VAL
96
A
SER
97
n
97
SER
97
A
HIS
98
n
98
HIS
98
A
SER
99
n
99
SER
99
A
VAL
100
n
100
VAL
100
A
GLN
101
n
101
GLN
101
A
GLU
102
n
102
GLU
102
A
ALA
103
n
103
ALA
103
A
TYR
104
n
104
TYR
104
A
LEU
105
n
105
LEU
105
A
PRO
106
n
106
PRO
106
A
THR
107
n
107
THR
107
A
GLY
108
n
108
GLY
108
A
GLU
109
n
109
GLU
109
A
GLY
110
n
110
GLY
110
A
CYO
111
n
111
CSD
111
A
LEU
112
n
112
LEU
112
A
SER
113
n
113
SER
113
A
VAL
114
n
114
VAL
114
A
ASP
115
n
115
ASP
115
A
ASP
116
n
116
ASP
116
A
ASN
117
n
117
ASN
117
A
VAL
118
n
118
VAL
118
A
ALA
119
n
119
ALA
119
A
GLY
120
n
120
GLY
120
A
LEU
121
n
121
LEU
121
A
VAL
122
n
122
VAL
122
A
HIS
123
n
123
HIS
123
A
ARG
124
n
124
ARG
124
A
HIS
125
n
125
HIS
125
A
ASN
126
n
126
ASN
126
A
ARG
127
n
127
ARG
127
A
ILE
128
n
128
ILE
128
A
THR
129
n
129
THR
129
A
ILE
130
n
130
ILE
130
A
LYS
131
n
131
LYS
131
A
ALA
132
n
132
ALA
132
A
LYS
133
n
133
LYS
133
A
ASP
134
n
134
ASP
134
A
ILE
135
n
135
ILE
135
A
GLU
136
n
136
GLU
136
A
GLY
137
n
137
GLY
137
A
ASN
138
n
138
ASN
138
A
ASP
139
n
139
ASP
139
A
ILE
140
n
140
ILE
140
A
GLN
141
n
141
GLN
141
A
LEU
142
n
142
LEU
142
A
ARG
143
n
143
ARG
143
A
LEU
144
n
144
LEU
144
A
LYS
145
n
145
LYS
145
A
GLY
146
n
146
GLY
146
A
TYR
147
n
147
TYR
147
A
PRO
148
n
148
PRO
148
A
ALA
149
n
149
ALA
149
A
ILE
150
n
150
ILE
150
A
VAL
151
n
151
VAL
151
A
PHE
152
n
152
PHE
152
A
GLN
153
n
153
GLN
153
A
HIS
154
n
154
HIS
154
A
GLU
155
n
155
GLU
155
A
ILE
156
n
156
ILE
156
A
ASP
157
n
157
ASP
157
A
HIS
158
n
158
HIS
158
A
LEU
159
n
159
LEU
159
A
ASN
160
n
160
ASN
160
A
GLY
161
n
161
GLY
161
A
VAL
162
n
162
VAL
162
A
MET
163
n
163
MET
163
A
PHE
164
n
164
PHE
164
A
TYR
165
n
165
TYR
165
A
ASP
166
n
166
ASP
166
A
HIS
167
n
167
HIS
167
A
ILE
168
n
168
ILE
168
A
ASP
169
n
169
ASP
169
A
LYS
170
n
170
LYS
170
A
ASP
171
n
171
ASP
171
A
HIS
172
n
172
HIS
172
A
PRO
173
n
173
PRO
173
A
LEU
174
n
174
LEU
174
A
GLN
175
n
175
GLN
175
A
PRO
176
n
176
PRO
176
A
HIS
177
n
177
HIS
177
A
THR
178
n
178
THR
178
A
ASP
179
n
179
ASP
179
A
ALA
180
n
180
ALA
180
A
VAL
181
n
181
VAL
181
A
GLU
182
n
182
GLU
182
A
VAL
183
n
183
VAL
183
A
LEU
184
n
184
LEU
184
A
GLU
185
n
185
GLU
185
A
HIS
186
n
186
HIS
186
A
n
187
187
A
n
188
188
A
n
189
189
A
n
190
190
A
n
191
191
A
author_defined_assembly
1
monomeric
A
CSD
111
A
SG
CSD
111
1_555
A
ZN
350
B
ZN
ZN
1_555
A
HIS
154
A
NE2
HIS
154
1_555
115.7
A
CSD
111
A
SG
CSD
111
1_555
A
ZN
350
B
ZN
ZN
1_555
A
HIS
158
A
NE2
HIS
158
1_555
102.1
A
HIS
154
A
NE2
HIS
154
1_555
A
ZN
350
B
ZN
ZN
1_555
A
HIS
158
A
NE2
HIS
158
1_555
101.2
A
CSD
111
A
SG
CSD
111
1_555
A
ZN
350
B
ZN
ZN
1_555
A
BB2
301
C
O2
BB2
1_555
147.2
A
HIS
154
A
NE2
HIS
154
1_555
A
ZN
350
B
ZN
ZN
1_555
A
BB2
301
C
O2
BB2
1_555
96.1
A
HIS
158
A
NE2
HIS
158
1_555
A
ZN
350
B
ZN
ZN
1_555
A
BB2
301
C
O2
BB2
1_555
77.9
A
CSD
111
A
SG
CSD
111
1_555
A
ZN
350
B
ZN
ZN
1_555
A
CSD
111
A
OD2
CSD
111
1_555
32.2
A
HIS
154
A
NE2
HIS
154
1_555
A
ZN
350
B
ZN
ZN
1_555
A
CSD
111
A
OD2
CSD
111
1_555
145.7
A
HIS
158
A
NE2
HIS
158
1_555
A
ZN
350
B
ZN
ZN
1_555
A
CSD
111
A
OD2
CSD
111
1_555
99.2
A
BB2
301
C
O2
BB2
1_555
A
ZN
350
B
ZN
ZN
1_555
A
CSD
111
A
OD2
CSD
111
1_555
115.1
A
CSD
111
A
SG
CSD
111
1_555
A
ZN
350
B
ZN
ZN
1_555
A
BB2
301
C
O4
BB2
1_555
90.4
A
HIS
154
A
NE2
HIS
154
1_555
A
ZN
350
B
ZN
ZN
1_555
A
BB2
301
C
O4
BB2
1_555
111.0
A
HIS
158
A
NE2
HIS
158
1_555
A
ZN
350
B
ZN
ZN
1_555
A
BB2
301
C
O4
BB2
1_555
136.0
A
BB2
301
C
O2
BB2
1_555
A
ZN
350
B
ZN
ZN
1_555
A
BB2
301
C
O4
BB2
1_555
69.8
A
CSD
111
A
OD2
CSD
111
1_555
A
ZN
350
B
ZN
ZN
1_555
A
BB2
301
C
O4
BB2
1_555
70.1
A
CSD
111
3-SULFINOALANINE
A
CSD
111
CYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
61
A
N
LEU
61
A
O
ALA
74
A
O
ALA
74
A
N
VAL
75
A
N
VAL
75
A
O
TYR
88
A
O
TYR
88
A
N
VAL
91
A
N
VAL
91
A
O
LYS
133
A
O
LYS
133
A
N
ALA
132
A
N
ALA
132
A
O
ILE
140
A
O
ILE
140
A
O
ARG
124
A
O
ARG
124
A
N
ALA
103
A
N
ALA
103
A
N
TYR
104
A
N
TYR
104
A
O
VAL
181
A
O
VAL
181
1
A
HOH
558
D
HOH
1
A
HIS
187
A
HIS
187
1
Y
1
A
HIS
188
A
HIS
188
1
Y
1
A
HIS
189
A
HIS
189
1
Y
1
A
HIS
190
A
HIS
190
1
Y
1
A
HIS
191
A
HIS
191
1
Y
1
A
A
O
O
HOH
HOH
766
766
1.24
1_555
3_556
1
A
A
CD1
CD1
ILE
ILE
140
140
2.15
1_555
3_556
1
A
GLU
185
-68.79
97.87
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
ACT.TOP
ION.PARAM
ACT.PARAM
20.8
2.77
0.00
0.00
-3.84
0.00
1.07
0.235
0.005
0.205
0.205
1.9
19.99
2108
21219
9.9
96.9
RANDOM
142155.07
0.00
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
FLAT MODEL
53.7775
0.396982
0.25
0.21
5.00
0.14
0.10
1.9
19.99
249
1749
28
0
1472
0.005
1.3
22.9
0.94
1.33
1.50
2.01
2.00
2.09
2.00
3.13
2.50
0.271
0.015
0.221
2.02
319
2797
6
10.2
85.6
9.3
1.9
20
1Q1Y
21798
21798
0.117
1
29.2
98.7
refinement
CNS
1.1
data reduction
HKL-2000
phasing
CNS
Peptide Deformylase (E.C.3.5.1.88)
Crystal Structures of Peptide Deformylase from Staphylococcus aureus Complexed with Actinonin
1
N
N
2
N
N
3
N
N
4
N
N
A
THR
3
A
THR
3
HELX_P
A
ILE
7
A
ILE
7
5
1
5
A
HIS
12
A
HIS
12
HELX_P
A
GLN
17
A
GLN
17
5
2
6
A
THR
27
A
THR
27
HELX_P
A
ASP
46
A
ASP
46
1
3
20
A
ASP
46
A
ASP
46
HELX_P
A
TYR
53
A
TYR
53
1
4
8
A
PRO
64
A
PRO
64
HELX_P
A
ASN
67
A
ASN
67
5
5
4
A
GLY
146
A
GLY
146
HELX_P
A
ASN
160
A
ASN
160
1
6
15
A
MET
163
A
MET
163
HELX_P
A
ILE
168
A
ILE
168
5
7
6
metalc
2.331
A
ZN
350
B
ZN
ZN
1_555
A
CSD
111
A
SG
CSD
111
1_555
metalc
2.101
A
ZN
350
B
ZN
ZN
1_555
A
HIS
154
A
NE2
HIS
154
1_555
metalc
2.220
A
ZN
350
B
ZN
ZN
1_555
A
HIS
158
A
NE2
HIS
158
1_555
covale
1.328
A
GLY
110
A
C
GLY
110
1_555
A
CSD
111
A
N
CSD
111
1_555
covale
1.330
A
CSD
111
A
C
CSD
111
1_555
A
LEU
112
A
N
LEU
112
1_555
metalc
2.423
A
ZN
350
B
ZN
ZN
1_555
A
BB2
301
C
O2
BB2
1_555
metalc
2.765
A
ZN
350
B
ZN
ZN
1_555
A
CSD
111
A
OD2
CSD
111
1_555
metalc
2.359
A
ZN
350
B
ZN
ZN
1_555
A
BB2
301
C
O4
BB2
1_555
HYDROLASE
metallo-enzyme, peptide deformylase, actinonin, Staphylococcus aureus, Hydrolase
A
LEU
24
A
LEU
24
1
A
PRO
25
A
PRO
25
0.12
DEF_STAAU
UNP
1
1
P68826
MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDD
GSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLN
GVMFYDHIDKNHPLQPHTDAVEV
1
183
1Q1Y
1
183
P68826
A
1
1
183
1
CYS
MODIFIED RESIDUE
CSD
111
1Q1Y
A
P68826
UNP
111
111
1
ASN
SEE REMARK 999
ASP
171
1Q1Y
A
P68826
UNP
171
171
1
EXPRESSION TAG
LEU
184
1Q1Y
A
P68826
UNP
184
1
EXPRESSION TAG
GLU
185
1Q1Y
A
P68826
UNP
185
1
EXPRESSION TAG
HIS
186
1Q1Y
A
P68826
UNP
186
1
EXPRESSION TAG
HIS
187
1Q1Y
A
P68826
UNP
187
1
EXPRESSION TAG
HIS
188
1Q1Y
A
P68826
UNP
188
1
EXPRESSION TAG
HIS
189
1Q1Y
A
P68826
UNP
189
1
EXPRESSION TAG
HIS
190
1Q1Y
A
P68826
UNP
190
1
EXPRESSION TAG
HIS
191
1Q1Y
A
P68826
UNP
191
5
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
GLY
60
A
GLY
60
A
ALA
62
A
ALA
62
A
MET
72
A
MET
72
A
ILE
77
A
ILE
77
A
TYR
86
A
TYR
86
A
HIS
98
A
HIS
98
A
ARG
127
A
ARG
127
A
LYS
133
A
LYS
133
A
ASP
139
A
ASP
139
A
LYS
145
A
LYS
145
A
ARG
124
A
ARG
124
A
HIS
125
A
HIS
125
A
GLU
102
A
GLU
102
A
TYR
104
A
TYR
104
A
VAL
181
A
VAL
181
A
GLU
182
A
GLU
182
BINDING SITE FOR RESIDUE ZN A 350
Software
5
BINDING SITE FOR RESIDUE BB2 A 301
Software
19
A
GLN
65
A
GLN
65
5
1_555
A
CSD
111
A
CSD
111
5
1_555
A
HIS
154
A
HIS
154
5
1_555
A
HIS
158
A
HIS
158
5
1_555
A
BB2
301
C
BB2
5
1_555
A
ARG
56
A
ARG
56
19
1_555
A
SER
57
A
SER
57
19
1_555
A
GLY
58
A
GLY
58
19
1_555
A
VAL
59
A
VAL
59
19
1_555
A
GLY
60
A
GLY
60
19
1_555
A
GLN
65
A
GLN
65
19
1_555
A
LEU
105
A
LEU
105
19
1_555
A
GLU
109
A
GLU
109
19
1_555
A
GLY
110
A
GLY
110
19
1_555
A
CSD
111
A
CSD
111
19
1_555
A
LEU
112
A
LEU
112
19
1_555
A
ILE
150
A
ILE
150
19
1_555
A
VAL
151
A
VAL
151
19
1_555
A
HIS
154
A
HIS
154
19
1_555
A
GLU
155
A
GLU
155
19
1_555
A
HIS
158
A
HIS
158
19
1_555
A
GLU
185
A
GLU
185
19
1_555
A
ZN
350
B
ZN
19
1_555
A
HOH
611
D
HOH
19
1_555
20
C 2 2 21