0.016457 0.000000 0.000000 0.000000 0.016457 0.000000 0.000000 0.000000 0.006333 0.00000 0.00000 0.00000 Im, Y.J. Lee, J.H. Park, S.H. Park, S.J. Rho, S.-H. Kang, G.B. Kim, E. Eom, S.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 60.763 60.763 157.902 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N S N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C Y 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C N 264 N C N 265 N C N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N N N 277 S C N 278 N C N 279 N O N 280 N C N 281 N O N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 R C N 295 N O N 296 N C N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N N N 308 S C N 309 N C N 310 N O N 311 N C Y 312 N C Y 313 N C Y 314 N C Y 315 N N Y 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N C N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N N N 335 S C N 336 N C N 337 N O N 338 N C Y 339 N C Y 340 N C Y 341 N C Y 342 N C Y 343 N C Y 344 N C N 345 N O N 346 N O N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C N 363 N C N 364 N C N 365 N O N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing Y 304 N doub Y 305 N sing Y 306 N sing N 307 N sing Y 308 N doub Y 309 N sing Y 310 N sing N 311 N sing Y 312 N sing Y 313 N doub N 314 N sing Y 315 N doub N 316 N sing Y 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N doub N 328 N sing N 329 N sing N 330 N sing N 331 N sing Y 332 N doub Y 333 N sing Y 334 N sing N 335 N sing Y 336 N doub N 337 N sing Y 338 N doub N 339 N sing Y 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N doub N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 278 48099 48104 10.1074/jbc.M306919200 12954649 Crystal structure of the Shank PDZ-ligand complex reveals a class I PDZ interaction and a novel PDZ-PDZ dimerization 2003 10.2210/pdb1q3p/pdb pdb_00001q3p 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 mirrors IMAGE PLATE 2002-04-26 MARRESEARCH Si 111 CHANNEL SINGLE WAVELENGTH M x-ray 1 1.000 1.0 6B PAL/PLS 1.000 SYNCHROTRON PAL/PLS BEAMLINE 6B 12073.959 Shank1 PDZ domain 2 man polymer 717.791 C-terminal hexapeptide from Guanylate kinase-associated protein 2 syn polymer 18.015 water 44 nat water C-terminal hexapeptide from GKAP no no GSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKV GHRQVVNMIRQGGNTLMVKVVMVTRHPDM GSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKV GHRQVVNMIRQGGNTLMVKVVMVTRHPDM A,B polypeptide(L) no no EAQTRL EAQTRL C,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Norway rat Rattus Escherichia Escherichia coli sample shank1 10116 Rattus norvegicus 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid pGEX4T1 1 3.04 59.25 VAPOR DIFFUSION, HANGING DROP 6.5 PEG 6000, KCl, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K 294 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Database references Refinement description 1 0 2004-01-27 1 1 2008-04-29 1 2 2011-07-13 1 3 2023-10-25 _database_2.pdbx_DOI _database_2.pdbx_database_accession The same protein without the peptide ligand RCSB Y PDBJ 2003-07-31 REL REL HOH water EAQTRL sequence is the C-terminal hexapeptide of GKAP protein in rattus norvegicus sample 1Q3O PDB entry 1Q3O PDB experimental model TIP 2 3 HOH HOH 2 A TIP 5 3 HOH HOH 5 A TIP 8 3 HOH HOH 8 A TIP 9 3 HOH HOH 9 A TIP 10 3 HOH HOH 10 A TIP 12 3 HOH HOH 12 A TIP 13 3 HOH HOH 13 A TIP 15 3 HOH HOH 15 A TIP 16 3 HOH HOH 16 A TIP 17 3 HOH HOH 17 A TIP 18 3 HOH HOH 18 A TIP 25 3 HOH HOH 25 A TIP 27 3 HOH HOH 27 A TIP 31 3 HOH HOH 31 A TIP 35 3 HOH HOH 35 A TIP 36 3 HOH HOH 36 A TIP 37 3 HOH HOH 37 A TIP 40 3 HOH HOH 40 A TIP 42 3 HOH HOH 42 A TIP 43 3 HOH HOH 43 A TIP 1 3 HOH HOH 1 B TIP 3 3 HOH HOH 3 B TIP 4 3 HOH HOH 4 B TIP 6 3 HOH HOH 6 B TIP 7 3 HOH HOH 7 B TIP 11 3 HOH HOH 11 B TIP 14 3 HOH HOH 14 B TIP 19 3 HOH HOH 19 B TIP 20 3 HOH HOH 20 B TIP 21 3 HOH HOH 21 B TIP 22 3 HOH HOH 22 B TIP 23 3 HOH HOH 23 B TIP 24 3 HOH HOH 24 B TIP 26 3 HOH HOH 26 B TIP 28 3 HOH HOH 28 B TIP 29 3 HOH HOH 29 B TIP 30 3 HOH HOH 30 B TIP 32 3 HOH HOH 32 B TIP 33 3 HOH HOH 33 B TIP 34 3 HOH HOH 34 B TIP 38 3 HOH HOH 38 B TIP 39 3 HOH HOH 39 B TIP 41 3 HOH HOH 41 B TIP 44 3 HOH HOH 44 B n 1 582 A n 2 583 A ASP 584 n 3 ASP 584 A TYR 585 n 4 TYR 585 A ILE 586 n 5 ILE 586 A ILE 587 n 6 ILE 587 A LYS 588 n 7 LYS 588 A GLU 589 n 8 GLU 589 A LYS 590 n 9 LYS 590 A THR 591 n 10 THR 591 A VAL 592 n 11 VAL 592 A LEU 593 n 12 LEU 593 A LEU 594 n 13 LEU 594 A GLN 595 n 14 GLN 595 A LYS 596 n 15 LYS 596 A LYS 597 n 16 LYS 597 A ASP 598 n 17 ASP 598 A SER 599 n 18 SER 599 A GLU 600 n 19 GLU 600 A GLY 601 n 20 GLY 601 A PHE 602 n 21 PHE 602 A GLY 603 n 22 GLY 603 A PHE 604 n 23 PHE 604 A VAL 605 n 24 VAL 605 A LEU 606 n 25 LEU 606 A ARG 607 n 26 ARG 607 A GLY 608 n 27 GLY 608 A ALA 609 n 28 ALA 609 A n 29 610 A n 30 611 A n 31 612 A n 32 613 A n 33 614 A ILE 615 n 34 ILE 615 A GLU 616 n 35 GLU 616 A GLU 617 n 36 GLU 617 A PHE 618 n 37 PHE 618 A THR 619 n 38 THR 619 A PRO 620 n 39 PRO 620 A THR 621 n 40 THR 621 A PRO 622 n 41 PRO 622 A ALA 623 n 42 ALA 623 A PHE 624 n 43 PHE 624 A PRO 625 n 44 PRO 625 A ALA 626 n 45 ALA 626 A LEU 627 n 46 LEU 627 A GLN 628 n 47 GLN 628 A TYR 629 n 48 TYR 629 A LEU 630 n 49 LEU 630 A GLU 631 n 50 GLU 631 A SER 632 n 51 SER 632 A VAL 633 n 52 VAL 633 A ASP 634 n 53 ASP 634 A GLU 635 n 54 GLU 635 A GLY 636 n 55 GLY 636 A GLY 637 n 56 GLY 637 A VAL 638 n 57 VAL 638 A ALA 639 n 58 ALA 639 A TRP 640 n 59 TRP 640 A ARG 641 n 60 ARG 641 A ALA 642 n 61 ALA 642 A GLY 643 n 62 GLY 643 A LEU 644 n 63 LEU 644 A ARG 645 n 64 ARG 645 A MET 646 n 65 MET 646 A GLY 647 n 66 GLY 647 A ASP 648 n 67 ASP 648 A PHE 649 n 68 PHE 649 A LEU 650 n 69 LEU 650 A ILE 651 n 70 ILE 651 A GLU 652 n 71 GLU 652 A VAL 653 n 72 VAL 653 A ASN 654 n 73 ASN 654 A GLY 655 n 74 GLY 655 A GLN 656 n 75 GLN 656 A ASN 657 n 76 ASN 657 A VAL 658 n 77 VAL 658 A VAL 659 n 78 VAL 659 A LYS 660 n 79 LYS 660 A VAL 661 n 80 VAL 661 A GLY 662 n 81 GLY 662 A HIS 663 n 82 HIS 663 A ARG 664 n 83 ARG 664 A GLN 665 n 84 GLN 665 A VAL 666 n 85 VAL 666 A VAL 667 n 86 VAL 667 A ASN 668 n 87 ASN 668 A MET 669 n 88 MET 669 A ILE 670 n 89 ILE 670 A ARG 671 n 90 ARG 671 A GLN 672 n 91 GLN 672 A GLY 673 n 92 GLY 673 A GLY 674 n 93 GLY 674 A ASN 675 n 94 ASN 675 A THR 676 n 95 THR 676 A LEU 677 n 96 LEU 677 A MET 678 n 97 MET 678 A VAL 679 n 98 VAL 679 A LYS 680 n 99 LYS 680 A VAL 681 n 100 VAL 681 A VAL 682 n 101 VAL 682 A MET 683 n 102 MET 683 A VAL 684 n 103 VAL 684 A THR 685 n 104 THR 685 A ARG 686 n 105 ARG 686 A n 106 687 A n 107 688 A n 108 689 A n 109 690 A GLY 582 n 1 GLY 582 B SER 583 n 2 SER 583 B ASP 584 n 3 ASP 584 B TYR 585 n 4 TYR 585 B ILE 586 n 5 ILE 586 B ILE 587 n 6 ILE 587 B LYS 588 n 7 LYS 588 B GLU 589 n 8 GLU 589 B LYS 590 n 9 LYS 590 B THR 591 n 10 THR 591 B VAL 592 n 11 VAL 592 B LEU 593 n 12 LEU 593 B LEU 594 n 13 LEU 594 B GLN 595 n 14 GLN 595 B LYS 596 n 15 LYS 596 B LYS 597 n 16 LYS 597 B ASP 598 n 17 ASP 598 B SER 599 n 18 SER 599 B GLU 600 n 19 GLU 600 B GLY 601 n 20 GLY 601 B PHE 602 n 21 PHE 602 B GLY 603 n 22 GLY 603 B PHE 604 n 23 PHE 604 B VAL 605 n 24 VAL 605 B LEU 606 n 25 LEU 606 B ARG 607 n 26 ARG 607 B GLY 608 n 27 GLY 608 B ALA 609 n 28 ALA 609 B n 29 610 B n 30 611 B n 31 612 B n 32 613 B n 33 614 B ILE 615 n 34 ILE 615 B GLU 616 n 35 GLU 616 B GLU 617 n 36 GLU 617 B PHE 618 n 37 PHE 618 B THR 619 n 38 THR 619 B PRO 620 n 39 PRO 620 B THR 621 n 40 THR 621 B PRO 622 n 41 PRO 622 B ALA 623 n 42 ALA 623 B PHE 624 n 43 PHE 624 B PRO 625 n 44 PRO 625 B ALA 626 n 45 ALA 626 B LEU 627 n 46 LEU 627 B GLN 628 n 47 GLN 628 B TYR 629 n 48 TYR 629 B LEU 630 n 49 LEU 630 B GLU 631 n 50 GLU 631 B SER 632 n 51 SER 632 B VAL 633 n 52 VAL 633 B ASP 634 n 53 ASP 634 B GLU 635 n 54 GLU 635 B GLY 636 n 55 GLY 636 B GLY 637 n 56 GLY 637 B VAL 638 n 57 VAL 638 B ALA 639 n 58 ALA 639 B TRP 640 n 59 TRP 640 B ARG 641 n 60 ARG 641 B ALA 642 n 61 ALA 642 B GLY 643 n 62 GLY 643 B LEU 644 n 63 LEU 644 B ARG 645 n 64 ARG 645 B MET 646 n 65 MET 646 B GLY 647 n 66 GLY 647 B ASP 648 n 67 ASP 648 B PHE 649 n 68 PHE 649 B LEU 650 n 69 LEU 650 B ILE 651 n 70 ILE 651 B GLU 652 n 71 GLU 652 B VAL 653 n 72 VAL 653 B ASN 654 n 73 ASN 654 B GLY 655 n 74 GLY 655 B GLN 656 n 75 GLN 656 B ASN 657 n 76 ASN 657 B VAL 658 n 77 VAL 658 B VAL 659 n 78 VAL 659 B LYS 660 n 79 LYS 660 B VAL 661 n 80 VAL 661 B GLY 662 n 81 GLY 662 B HIS 663 n 82 HIS 663 B ARG 664 n 83 ARG 664 B GLN 665 n 84 GLN 665 B VAL 666 n 85 VAL 666 B VAL 667 n 86 VAL 667 B ASN 668 n 87 ASN 668 B MET 669 n 88 MET 669 B ILE 670 n 89 ILE 670 B ARG 671 n 90 ARG 671 B GLN 672 n 91 GLN 672 B GLY 673 n 92 GLY 673 B GLY 674 n 93 GLY 674 B ASN 675 n 94 ASN 675 B THR 676 n 95 THR 676 B LEU 677 n 96 LEU 677 B MET 678 n 97 MET 678 B VAL 679 n 98 VAL 679 B LYS 680 n 99 LYS 680 B VAL 681 n 100 VAL 681 B VAL 682 n 101 VAL 682 B MET 683 n 102 MET 683 B VAL 684 n 103 VAL 684 B THR 685 n 104 THR 685 B ARG 686 n 105 ARG 686 B HIS 687 n 106 HIS 687 B PRO 688 n 107 PRO 688 B ASP 689 n 108 ASP 689 B n 109 690 B GLU 1 n 1 GLU 1 C ALA 2 n 2 ALA 2 C GLN 3 n 3 GLN 3 C THR 4 n 4 THR 4 C ARG 5 n 5 ARG 5 C LEU 6 n 6 LEU 6 C GLU 1 n 1 GLU 1 D ALA 2 n 2 ALA 2 D GLN 3 n 3 GLN 3 D THR 4 n 4 THR 4 D ARG 5 n 5 ARG 5 D LEU 6 n 6 LEU 6 D author_and_software_defined_assembly PISA 4 tetrameric software_defined_assembly PISA 8 octameric 3190 -7 11420 8500 -23 20740 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A O GLN 656 A O GLN 75 A N VAL 653 A N VAL 72 A N PHE 649 A N PHE 68 A O VAL 682 A O VAL 101 A O MET 683 A O MET 102 A N LYS 588 A N LYS 7 A N ILE 587 A N ILE 6 B O TYR 585 B O TYR 4 B N LEU 594 B N LEU 13 B O LEU 677 B O LEU 96 B O VAL 682 B O VAL 101 B N PHE 649 B N PHE 68 B N VAL 653 B N VAL 72 B O GLN 656 B O GLN 75 A O SER 632 A O SER 51 A N VAL 605 A N VAL 24 A N LEU 606 A N LEU 25 C O THR 4 C O THR 4 B O TYR 629 B O TYR 48 B N ARG 607 B N ARG 26 B N LEU 606 B N LEU 25 D O THR 4 D O THR 4 1 A GLY 582 A GLY 1 1 Y 1 A SER 583 A SER 2 1 Y 1 A LYS 610 A LYS 29 1 Y 1 A ALA 611 A ALA 30 1 Y 1 A GLN 612 A GLN 31 1 Y 1 A THR 613 A THR 32 1 Y 1 A PRO 614 A PRO 33 1 Y 1 A HIS 687 A HIS 106 1 Y 1 A PRO 688 A PRO 107 1 Y 1 A ASP 689 A ASP 108 1 Y 1 A MET 690 A MET 109 1 Y 1 B LYS 610 B LYS 29 1 Y 1 B ALA 611 B ALA 30 1 Y 1 B GLN 612 B GLN 31 1 Y 1 B THR 613 B THR 32 1 Y 1 B PRO 614 B PRO 33 1 Y 1 B MET 690 B MET 109 1 Y 1 A TYR 585 173.05 107.81 1 A GLU 616 -153.30 -72.05 1 B GLU 616 -151.20 -113.80 1 B GLU 635 -36.88 -17.70 1 B ASN 675 63.21 -18.85 1 C ALA 2 -171.86 128.19 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP 44.1 0.78 0.00 0.00 0.78 0.00 -1.57 0.28 0.010 0.251 0.253 0.251 2.25 29.84 718 14786 14239 5.0 96.3 RANDOM 840523.46 0.000000 1 RESTRAINED THROUGHOUT 0.0 0 MOLECULAR REPLACEMENT PDB entry 1Q3O Engh & Huber FLAT MODEL 52.5189 0.359095 0.38 0.34 5.00 0.30 0.30 2.25 29.84 44 1711 0 0 1667 0.007 1.3 25.4 0.70 1.65 1.50 2.78 2.00 2.22 2.00 3.34 2.50 0.312 0.028 0.293 2.39 126 2183 6 5.5 96.7 30.3 2.25 30 1Q3P 64296 61853 2 4 0.041 0.041 1 50.9 4.3 96.2 0.258 2.25 2.29 6.6 0.258 96.5 refinement CNS 1.1 data reduction DENZO data scaling SCALEPACK phasing MOLREP Crystal structure of the Shank PDZ-ligand complex reveals a class I PDZ interaction and a novel PDZ-PDZ dimerization 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N A GLY 637 A GLY 56 HELX_P A GLY 643 A GLY 62 1 1 7 A GLY 662 A GLY 81 HELX_P A GLY 673 A GLY 92 1 2 12 B GLY 637 B GLY 56 HELX_P B ALA 642 B ALA 61 1 3 6 B GLY 662 B GLY 81 HELX_P B GLY 673 B GLY 92 1 4 12 PEPTIDE BINDING PROTEIN shank, PDZ, GKAP, PEPTIDE BINDING PROTEIN SHAN1_RAT UNP 1 582 Q9WV48 GSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKV GHRQVVNMIRQGGNTLMVKVVMVTRHPDM NP_075235 GB 2 987 19923689 EAQTRL 582 690 1Q3P 582 690 Q9WV48 A 1 1 109 582 690 1Q3P 582 690 Q9WV48 B 1 1 109 987 992 1Q3P 1 6 19923689 C 2 1 6 987 992 1Q3P 1 6 19923689 D 2 1 6 8 3 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLN 656 A GLN 75 A ASN 657 A ASN 76 A PHE 649 A PHE 68 A VAL 653 A VAL 72 A THR 676 A THR 95 A VAL 684 A VAL 103 A ILE 586 A ILE 5 A GLN 595 A GLN 14 B SER 583 B SER 2 B GLN 595 B GLN 14 B THR 676 B THR 95 B PRO 688 B PRO 107 B PHE 649 B PHE 68 B VAL 653 B VAL 72 B GLN 656 B GLN 75 B ASN 657 B ASN 76 A TYR 629 A TYR 48 A VAL 633 A VAL 52 A PHE 604 A PHE 23 A ARG 607 A ARG 26 C GLN 3 C GLN 3 C ARG 5 C ARG 5 B GLN 628 B GLN 47 B VAL 633 B VAL 52 B PHE 604 B PHE 23 B GLY 608 B GLY 27 D ALA 2 D ALA 2 D ARG 5 D ARG 5 92 P 41 21 2