0.018028
0.010409
0.000000
0.000000
0.020817
0.000000
0.000000
0.000000
0.017339
0.00000
0.00000
0.00000
Phillips Jr., G.N.
Bingman, C.A.
Johnson, K.A.
Smith, D.W.
Center for Eukaryotic Structural Genomics (CESG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
55.468
55.468
57.673
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proteins
PSFGEY
0867
0887-3585
57
218
220
10.1002/prot.20215
15326607
Crystal structure of the protein from gene At3g17210 of Arabidopsis thaliana
2004
90
1
Bent cylindrical Si-mirror (Rh coating)
CCD
2003-06-26
MARRESEARCH
Diamond (111) double-crystal monochromator
MAD
M
x-ray
1
0.979
1.0
14-ID-B
APS
0.979
SYNCHROTRON
APS BEAMLINE 14-ID-B
12576.025
protein At3g17210
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
18.015
water
109
nat
water
no
yes
GSH(MSE)EEAKGPVKHVLLASFKDGVSPEKIEELIKGYANLVNLIEP(MSE)KAFHWGKDVSIENLHQGYTHIFESTFE
SKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDYKPTSVSL
GSHMEEAKGPVKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEY
IAHPAHVEFATIFLGSLDKVLVIDYKPTSVSL
A
GO.13081
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
thale cress
Arabidopsis
Escherichia
sample
At3g17210
3702
Arabidopsis thaliana
562
Escherichia coli
Rosetta
Plasmid
PVP13
1
1.95
36.5
VAPOR DIFFUSION, HANGING DROP
6.0
Sodium MES, Sodium citrate, MEthyl Ether PEG 5000, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 297K
297
Center for Eukaryotic Structural Genomics
CESG
PSI, Protein Structure Initiative
software
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Refinement description
1
0
2003-11-25
1
1
2008-02-01
1
2
2011-07-13
1
3
2017-10-11
NMR structure of same protein
Y
RCSB
Y
RCSB
2003-08-04
REL
REL
MG
MAGNESIUM ION
HOH
water
MG
901
2
MG
MG
901
A
HOH
7001
3
HOH
HOH
7001
A
HOH
9001
3
HOH
HOH
7002
A
HOH
1
3
HOH
HOH
7003
A
HOH
2
3
HOH
HOH
7004
A
HOH
3
3
HOH
HOH
7005
A
HOH
4
3
HOH
HOH
7006
A
HOH
5
3
HOH
HOH
7007
A
HOH
6
3
HOH
HOH
7008
A
HOH
7
3
HOH
HOH
7009
A
HOH
8
3
HOH
HOH
7010
A
HOH
9
3
HOH
HOH
7011
A
HOH
10
3
HOH
HOH
7012
A
HOH
11
3
HOH
HOH
7013
A
HOH
12
3
HOH
HOH
7014
A
HOH
13
3
HOH
HOH
7015
A
HOH
14
3
HOH
HOH
7016
A
HOH
15
3
HOH
HOH
7017
A
HOH
16
3
HOH
HOH
7018
A
HOH
17
3
HOH
HOH
7019
A
HOH
18
3
HOH
HOH
7020
A
HOH
19
3
HOH
HOH
7021
A
HOH
20
3
HOH
HOH
7022
A
HOH
21
3
HOH
HOH
7023
A
HOH
22
3
HOH
HOH
7024
A
HOH
23
3
HOH
HOH
7025
A
HOH
24
3
HOH
HOH
7026
A
HOH
25
3
HOH
HOH
7027
A
HOH
26
3
HOH
HOH
7028
A
HOH
27
3
HOH
HOH
7029
A
HOH
28
3
HOH
HOH
7030
A
HOH
29
3
HOH
HOH
7031
A
HOH
30
3
HOH
HOH
7032
A
HOH
31
3
HOH
HOH
7033
A
HOH
32
3
HOH
HOH
7034
A
HOH
33
3
HOH
HOH
7035
A
HOH
34
3
HOH
HOH
7036
A
HOH
35
3
HOH
HOH
7037
A
HOH
36
3
HOH
HOH
7038
A
HOH
37
3
HOH
HOH
7039
A
HOH
38
3
HOH
HOH
7040
A
HOH
39
3
HOH
HOH
7041
A
HOH
40
3
HOH
HOH
7042
A
HOH
41
3
HOH
HOH
7043
A
HOH
42
3
HOH
HOH
7044
A
HOH
43
3
HOH
HOH
7045
A
HOH
44
3
HOH
HOH
7046
A
HOH
45
3
HOH
HOH
7047
A
HOH
46
3
HOH
HOH
7048
A
HOH
47
3
HOH
HOH
7049
A
HOH
48
3
HOH
HOH
7050
A
HOH
49
3
HOH
HOH
7051
A
HOH
50
3
HOH
HOH
7052
A
HOH
51
3
HOH
HOH
7053
A
HOH
52
3
HOH
HOH
7054
A
HOH
53
3
HOH
HOH
7055
A
HOH
54
3
HOH
HOH
7056
A
HOH
55
3
HOH
HOH
7057
A
HOH
56
3
HOH
HOH
7058
A
HOH
57
3
HOH
HOH
7059
A
HOH
58
3
HOH
HOH
7060
A
HOH
59
3
HOH
HOH
7061
A
HOH
60
3
HOH
HOH
7062
A
HOH
61
3
HOH
HOH
7063
A
HOH
62
3
HOH
HOH
7064
A
HOH
63
3
HOH
HOH
7065
A
HOH
64
3
HOH
HOH
7066
A
HOH
65
3
HOH
HOH
7067
A
HOH
66
3
HOH
HOH
7068
A
HOH
67
3
HOH
HOH
7069
A
HOH
68
3
HOH
HOH
7070
A
HOH
69
3
HOH
HOH
7071
A
HOH
70
3
HOH
HOH
7072
A
HOH
71
3
HOH
HOH
7073
A
HOH
72
3
HOH
HOH
7074
A
HOH
73
3
HOH
HOH
7075
A
HOH
74
3
HOH
HOH
7076
A
HOH
75
3
HOH
HOH
7077
A
HOH
76
3
HOH
HOH
7078
A
HOH
77
3
HOH
HOH
7079
A
HOH
78
3
HOH
HOH
7080
A
HOH
79
3
HOH
HOH
7081
A
HOH
80
3
HOH
HOH
7082
A
HOH
81
3
HOH
HOH
7083
A
HOH
82
3
HOH
HOH
7084
A
HOH
83
3
HOH
HOH
7085
A
HOH
84
3
HOH
HOH
7086
A
HOH
85
3
HOH
HOH
7087
A
HOH
86
3
HOH
HOH
7088
A
HOH
87
3
HOH
HOH
7089
A
HOH
88
3
HOH
HOH
7090
A
HOH
89
3
HOH
HOH
7091
A
HOH
90
3
HOH
HOH
7092
A
HOH
91
3
HOH
HOH
7093
A
HOH
92
3
HOH
HOH
7094
A
HOH
93
3
HOH
HOH
7095
A
HOH
94
3
HOH
HOH
7096
A
HOH
95
3
HOH
HOH
7097
A
HOH
96
3
HOH
HOH
7098
A
HOH
97
3
HOH
HOH
7099
A
HOH
98
3
HOH
HOH
7100
A
HOH
99
3
HOH
HOH
7101
A
HOH
100
3
HOH
HOH
7102
A
HOH
101
3
HOH
HOH
7103
A
HOH
102
3
HOH
HOH
7104
A
HOH
103
3
HOH
HOH
7105
A
HOH
104
3
HOH
HOH
7106
A
HOH
105
3
HOH
HOH
7107
A
HOH
106
3
HOH
HOH
7108
A
HOH
107
3
HOH
HOH
7109
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
PRO
10
n
10
PRO
10
A
VAL
11
n
11
VAL
11
A
LYS
12
n
12
LYS
12
A
HIS
13
n
13
HIS
13
A
VAL
14
n
14
VAL
14
A
LEU
15
n
15
LEU
15
A
LEU
16
n
16
LEU
16
A
ALA
17
n
17
ALA
17
A
SER
18
n
18
SER
18
A
PHE
19
n
19
PHE
19
A
LYS
20
n
20
LYS
20
A
ASP
21
n
21
ASP
21
A
GLY
22
n
22
GLY
22
A
VAL
23
n
23
VAL
23
A
SER
24
n
24
SER
24
A
PRO
25
n
25
PRO
25
A
GLU
26
n
26
GLU
26
A
LYS
27
n
27
LYS
27
A
ILE
28
n
28
ILE
28
A
GLU
29
n
29
GLU
29
A
GLU
30
n
30
GLU
30
A
LEU
31
n
31
LEU
31
A
ILE
32
n
32
ILE
32
A
LYS
33
n
33
LYS
33
A
GLY
34
n
34
GLY
34
A
TYR
35
n
35
TYR
35
A
ALA
36
n
36
ALA
36
A
ASN
37
n
37
ASN
37
A
LEU
38
n
38
LEU
38
A
VAL
39
n
39
VAL
39
A
ASN
40
n
40
ASN
40
A
LEU
41
n
41
LEU
41
A
ILE
42
n
42
ILE
42
A
GLU
43
n
43
GLU
43
A
PRO
44
n
44
PRO
44
A
MSE
45
n
45
MSE
45
A
LYS
46
n
46
LYS
46
A
ALA
47
n
47
ALA
47
A
PHE
48
n
48
PHE
48
A
HIS
49
n
49
HIS
49
A
TRP
50
n
50
TRP
50
A
GLY
51
n
51
GLY
51
A
LYS
52
n
52
LYS
52
A
ASP
53
n
53
ASP
53
A
VAL
54
n
54
VAL
54
A
SER
55
n
55
SER
55
A
ILE
56
n
56
ILE
56
A
GLU
57
n
57
GLU
57
A
ASN
58
n
58
ASN
58
A
LEU
59
n
59
LEU
59
A
HIS
60
n
60
HIS
60
A
GLN
61
n
61
GLN
61
A
GLY
62
n
62
GLY
62
A
TYR
63
n
63
TYR
63
A
THR
64
n
64
THR
64
A
HIS
65
n
65
HIS
65
A
ILE
66
n
66
ILE
66
A
PHE
67
n
67
PHE
67
A
GLU
68
n
68
GLU
68
A
SER
69
n
69
SER
69
A
THR
70
n
70
THR
70
A
PHE
71
n
71
PHE
71
A
GLU
72
n
72
GLU
72
A
SER
73
n
73
SER
73
A
LYS
74
n
74
LYS
74
A
GLU
75
n
75
GLU
75
A
ALA
76
n
76
ALA
76
A
VAL
77
n
77
VAL
77
A
ALA
78
n
78
ALA
78
A
GLU
79
n
79
GLU
79
A
TYR
80
n
80
TYR
80
A
ILE
81
n
81
ILE
81
A
ALA
82
n
82
ALA
82
A
HIS
83
n
83
HIS
83
A
PRO
84
n
84
PRO
84
A
ALA
85
n
85
ALA
85
A
HIS
86
n
86
HIS
86
A
VAL
87
n
87
VAL
87
A
GLU
88
n
88
GLU
88
A
PHE
89
n
89
PHE
89
A
ALA
90
n
90
ALA
90
A
THR
91
n
91
THR
91
A
ILE
92
n
92
ILE
92
A
PHE
93
n
93
PHE
93
A
LEU
94
n
94
LEU
94
A
GLY
95
n
95
GLY
95
A
SER
96
n
96
SER
96
A
LEU
97
n
97
LEU
97
A
ASP
98
n
98
ASP
98
A
LYS
99
n
99
LYS
99
A
VAL
100
n
100
VAL
100
A
LEU
101
n
101
LEU
101
A
VAL
102
n
102
VAL
102
A
ILE
103
n
103
ILE
103
A
ASP
104
n
104
ASP
104
A
TYR
105
n
105
TYR
105
A
LYS
106
n
106
LYS
106
A
PRO
107
n
107
PRO
107
A
THR
108
n
108
THR
108
A
SER
109
n
109
SER
109
A
VAL
110
n
110
VAL
110
A
SER
111
n
111
SER
111
A
LEU
112
n
112
LEU
112
A
author_and_software_defined_assembly
PISA,PQS
2
dimeric
3380
-42
10440
A
VAL
39
A
O
VAL
39
1_555
A
MG
901
B
MG
MG
1_555
A
ILE
42
A
O
ILE
42
1_555
89.6
A
VAL
39
A
O
VAL
39
1_555
A
MG
901
B
MG
MG
1_555
A
MSE
45
A
O
MSE
45
1_555
95.9
A
ILE
42
A
O
ILE
42
1_555
A
MG
901
B
MG
MG
1_555
A
MSE
45
A
O
MSE
45
1_555
97.3
A
VAL
39
A
O
VAL
39
1_555
A
MG
901
B
MG
MG
1_555
A
HOH
7002
C
O
HOH
1_555
75.4
A
ILE
42
A
O
ILE
42
1_555
A
MG
901
B
MG
MG
1_555
A
HOH
7002
C
O
HOH
1_555
93.4
A
MSE
45
A
O
MSE
45
1_555
A
MG
901
B
MG
MG
1_555
A
HOH
7002
C
O
HOH
1_555
166.1
A
VAL
39
A
O
VAL
39
1_555
A
MG
901
B
MG
MG
1_555
A
HOH
7001
C
O
HOH
1_555
99.9
A
ILE
42
A
O
ILE
42
1_555
A
MG
901
B
MG
MG
1_555
A
HOH
7001
C
O
HOH
1_555
166.4
A
MSE
45
A
O
MSE
45
1_555
A
MG
901
B
MG
MG
1_555
A
HOH
7001
C
O
HOH
1_555
91.4
A
HOH
7002
C
O
HOH
1_555
A
MG
901
B
MG
MG
1_555
A
HOH
7001
C
O
HOH
1_555
79.8
A
VAL
39
A
O
VAL
39
1_555
A
MG
901
B
MG
MG
1_555
A
GLU
43
A
O
GLU
43
1_555
166.1
A
ILE
42
A
O
ILE
42
1_555
A
MG
901
B
MG
MG
1_555
A
GLU
43
A
O
GLU
43
1_555
78.6
A
MSE
45
A
O
MSE
45
1_555
A
MG
901
B
MG
MG
1_555
A
GLU
43
A
O
GLU
43
1_555
92.9
A
HOH
7002
C
O
HOH
1_555
A
MG
901
B
MG
MG
1_555
A
GLU
43
A
O
GLU
43
1_555
97.8
A
HOH
7001
C
O
HOH
1_555
A
MG
901
B
MG
MG
1_555
A
GLU
43
A
O
GLU
43
1_555
90.6
A
MSE
45
SELENOMETHIONINE
A
MSE
45
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
4_565
-x,-y+1,z
crystal symmetry operation
-27.7340000000
48.0366970971
0.0000000000
A
N
HIS
49
A
N
HIS
49
A
O
GLU
68
A
O
GLU
68
A
O
SER
69
A
O
SER
69
A
N
HIS
13
A
N
HIS
13
A
N
VAL
14
A
N
VAL
14
A
O
ILE
103
A
O
ILE
103
1
A
GLY
1
A
GLY
1
1
Y
1
A
SER
2
A
SER
2
1
Y
1
A
HIS
3
A
HIS
3
1
Y
1
A
MSE
4
A
MSE
4
1
Y
1
A
GLU
5
A
GLU
5
1
Y
1
A
GLU
6
A
GLU
6
1
Y
1
A
ALA
7
A
ALA
7
1
Y
1
A
LYS
8
A
LYS
8
1
Y
1
A
GLY
9
A
GLY
9
1
Y
1
A
CA
PRO
10
WRONG HAND
1
A
A
OE2
O
GLU
HOH
79
7067
1.97
1
15.91
2.60
112.10
128.01
A
A
A
N
CA
C
PRO
PRO
PRO
10
10
10
A
N
21.214
-0.13
-0.07
0.00
-0.13
0.00
0.20
0.957
0.938
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.2323
0.18217
0.18469
0.18469
1.90
20.00
369
7209
7209
4.9
94.76
4.331
0.123
RANDOM
1
THROUGHOUT
0.0
0.0
MAD
0.187
0.165
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.90
20.00
109
928
1
0
818
0.020
0.021
850
0.002
0.020
769
1.861
1.949
1153
1.025
3.000
1806
6.185
5.000
102
0.338
0.200
132
0.010
0.020
918
0.010
0.020
161
0.216
0.200
164
0.244
0.200
837
0.091
0.200
465
0.187
0.200
60
0.233
0.200
10
0.276
0.200
77
0.164
0.200
15
1.058
1.500
519
1.851
2.000
844
2.796
3.000
331
4.482
4.500
309
0.267
0.258
1.950
27
342
598
20
75.2
21.2
1.90
20.0
1Q4R
7570
2.0
0.042
1
35.6
10.1
98.30
0.303
1.90
1.97
2.06
598
1
2.9
75.2
data collection
MAR345
data scaling
SCALEPACK
phasing
SOLVE
RESOLVE
refinement
REFMAC
5.1.24
phasing
RESOLVE
protein At3g17210
Gene Product of At3g17210 from Arabidopsis Thaliana
1
N
N
2
N
N
3
N
N
The second part of the biological assembly is generated
by the two fold axis:-x, -y, z and a translation of 0 1 0
A
SER
24
A
SER
24
HELX_P
A
ASN
37
A
ASN
37
1
1
14
A
ASN
37
A
ASN
37
HELX_P
A
ILE
42
A
ILE
42
1
2
6
A
SER
73
A
SER
73
HELX_P
A
HIS
83
A
HIS
83
1
3
11
A
HIS
83
A
HIS
83
HELX_P
A
SER
96
A
SER
96
1
4
14
metalc
2.350
A
VAL
39
A
O
VAL
39
1_555
A
MG
901
B
MG
MG
1_555
metalc
2.129
A
ILE
42
A
O
ILE
42
1_555
A
MG
901
B
MG
MG
1_555
metalc
2.326
A
MSE
45
A
O
MSE
45
1_555
A
MG
901
B
MG
MG
1_555
metalc
2.487
A
MG
901
B
MG
MG
1_555
A
HOH
7002
C
O
HOH
1_555
metalc
2.132
A
MG
901
B
MG
MG
1_555
A
HOH
7001
C
O
HOH
1_555
covale
1.322
A
PRO
44
A
C
PRO
44
1_555
A
MSE
45
A
N
MSE
45
1_555
covale
1.329
A
MSE
45
A
C
MSE
45
1_555
A
LYS
46
A
N
LYS
46
1_555
metalc
2.905
A
MG
901
B
MG
MG
1_555
A
GLU
43
A
O
GLU
43
1_555
UNKNOWN FUNCTION, STRUCTURAL GENOMICS
Arabidopsis Thaliana, Center for Eukaryotic Structural Genomics, Structural Genomics, Protein Structure Initiative, CESG, UNKNOWN FUNCTION
POP3_ARATH
UNP
1
1
Q9LUV2
MEEAKGPVKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYIAH
PAHVEFATIFLGSLDKVLVIDYKPTSVSL
1
109
1Q4R
4
112
Q9LUV2
A
1
4
112
1
CLONING ARTIFACT
GLY
1
1Q4R
A
Q9LUV2
UNP
1
1
CLONING ARTIFACT
SER
2
1Q4R
A
Q9LUV2
UNP
2
1
CLONING ARTIFACT
HIS
3
1Q4R
A
Q9LUV2
UNP
3
1
MET
MODIFIED RESIDUE
MSE
4
1Q4R
A
Q9LUV2
UNP
1
4
1
MET
MODIFIED RESIDUE
MSE
45
1Q4R
A
Q9LUV2
UNP
42
45
4
anti-parallel
anti-parallel
anti-parallel
A
ALA
47
A
ALA
47
A
LYS
52
A
LYS
52
A
HIS
65
A
HIS
65
A
PHE
71
A
PHE
71
A
VAL
11
A
VAL
11
A
PHE
19
A
PHE
19
A
LEU
97
A
LEU
97
A
TYR
105
A
TYR
105
BINDING SITE FOR RESIDUE MG A 901
Software
6
A
VAL
39
A
VAL
39
6
1_555
A
ILE
42
A
ILE
42
6
1_555
A
GLU
43
A
GLU
43
6
1_555
A
MSE
45
A
MSE
45
6
1_555
A
HOH
7001
C
HOH
6
1_555
A
HOH
7002
C
HOH
6
1_555
171
hexagonal
P 62