0.017677 0.010206 0.000000 0.000000 0.020412 0.000000 0.000000 0.000000 0.002564 0.00000 0.00000 0.00000 Borngraeber, S. Budny, M.J. Chiellini, G. Cunha-Lima, S.T. Togashi, M. Webb, P. Baxter, J.D. Scanlan, T.S. Fletterick, R.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 56.570 56.570 390.050 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C24 H24 O4 376.445 [4-(3-BENZYL-4-HYDROXYBENZYL)-3,5-DIMETHYLPHENOXY]ACETIC ACID GC-24 non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H Y 88 N C Y 89 N C Y 90 N C Y 91 N C Y 92 N C Y 93 N C N 94 N C Y 95 N C Y 96 N C Y 97 N C N 98 N O Y 99 N C Y 100 N C Y 101 N C N 102 N C Y 103 N C Y 104 N C N 105 N C Y 106 N C Y 107 N C N 108 N C Y 109 N C Y 110 N C N 111 N O N 112 N C N 113 N C N 114 N O N 115 N O N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N N N 141 S C N 142 N C N 143 N O N 144 N C N 145 N C N 146 N C N 147 N O N 148 N N N 149 N O N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N N N 161 S C N 162 N C N 163 N O N 164 N C N 165 N C N 166 N C N 167 N O N 168 N O N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N N N 180 N C N 181 N C N 182 N O N 183 N O N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N N N 190 S C N 191 N C N 192 N O N 193 N C Y 194 N C Y 195 N N Y 196 N C Y 197 N C Y 198 N N N 199 N O N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N O N 211 N H N 212 N H N 213 N N N 214 S C N 215 N C N 216 N O N 217 S C N 218 N C N 219 N C N 220 N C N 221 N O N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N N N 236 S C N 237 N C N 238 N O N 239 N C N 240 N C N 241 N C N 242 N C N 243 N O N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N N N 258 S C N 259 N C N 260 N O N 261 N C N 262 N C N 263 N C N 264 N C N 265 N N N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N N N 283 S C N 284 N C N 285 N O N 286 N C N 287 N C N 288 N S N 289 N C N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N N N 303 S C N 304 N C N 305 N O N 306 N C Y 307 N C Y 308 N C Y 309 N C Y 310 N C Y 311 N C Y 312 N C N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N N N 326 S C N 327 N C N 328 N O N 329 N C N 330 N C N 331 N C N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N N N 343 S C N 344 N C N 345 N O N 346 N C N 347 N O N 348 N O N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N N N 357 S C N 358 N C N 359 N O N 360 R C N 361 N O N 362 N C N 363 N O N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C Y 378 N C Y 379 N C Y 380 N C Y 381 N N Y 382 N C Y 383 N C Y 384 N C Y 385 N C Y 386 N C N 387 N O N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N N N 401 S C N 402 N C N 403 N O N 404 N C Y 405 N C Y 406 N C Y 407 N C Y 408 N C Y 409 N C Y 410 N C N 411 N O N 412 N O N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N N N 425 S C N 426 N C N 427 N O N 428 N C N 429 N C N 430 N C N 431 N O N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing Y 83 N doub Y 84 N sing N 85 N sing Y 86 N sing N 87 N sing Y 88 N doub N 89 N sing Y 90 N sing N 91 N sing Y 92 N doub N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing Y 98 N doub Y 99 N sing Y 100 N sing N 101 N sing N 102 N sing Y 103 N doub N 104 N sing Y 105 N sing N 106 N sing Y 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing Y 113 N doub Y 114 N sing N 115 N sing Y 116 N sing N 117 N sing N 118 N sing N 119 N sing Y 120 N doub N 121 N sing N 122 N sing Y 123 N doub N 124 N sing N 125 N sing N 126 N sing Y 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N doub N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N doub N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing Y 194 N sing Y 195 N doub Y 196 N doub N 197 N sing Y 198 N sing N 199 N sing Y 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N doub N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N doub N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N doub N 298 N sing N 299 N sing N 300 N sing N 301 N sing Y 302 N doub Y 303 N sing Y 304 N sing N 305 N sing Y 306 N doub N 307 N sing Y 308 N doub N 309 N sing Y 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N doub N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N doub N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N doub N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N doub N 367 N sing N 368 N sing N 369 N sing N 370 N sing Y 371 N doub Y 372 N sing Y 373 N sing N 374 N sing Y 375 N doub Y 376 N sing Y 377 N sing N 378 N sing Y 379 N sing Y 380 N doub N 381 N sing Y 382 N doub N 383 N sing Y 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N doub N 395 N sing N 396 N sing N 397 N sing N 398 N sing Y 399 N doub Y 400 N sing Y 401 N sing N 402 N sing Y 403 N doub N 404 N sing Y 405 N doub N 406 N sing Y 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N doub N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 100 15358 15363 10.1073/pnas.2136689100 14673100 Ligand selectivity by seeking hydrophobicity in thyroid hormone receptor. 2003 10.2210/pdb1q4x/pdb pdb_00001q4x 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 CCD 2002-02-02 ADSC QUANTUM 4 DOUBLE CRYSTAL SINGLE WAVELENGTH M x-ray 1 1.127 1.0 8.3.1 ALS 1.127 SYNCHROTRON ALS BEAMLINE 8.3.1 28582.080 Thyroid hormone receptor beta-1 Ligand Binding Domain 1 man polymer 376.445 [4-(3-BENZYL-4-HYDROXYBENZYL)-3,5-DIMETHYLPHENOXY]ACETIC ACID 2 syn non-polymer 18.015 water 40 nat water no no GHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAK KLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDT EVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPT ELFPPLFLEVFED GHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAK KLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDT EVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPT ELFPPLFLEVFED A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia Escherichia coli sample THRB OR NR1A2 OR ERBA2 OR THR1 9606 Homo sapiens 511693 Escherichia coli BL21 BL21 plasmid pET28 1 3.15 60.95 VAPOR DIFFUSION, SITTING DROP 4.9 PEG 3350, sodium acetate, glucose, cymal-2, pH 4.9, VAPOR DIFFUSION, SITTING DROP, temperature 291.0K 291.0 chem_comp_atom chem_comp_bond database_2 struct_site pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2004-02-03 1 1 2008-04-29 1 2 2011-07-13 1 3 2024-02-14 1 4 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2003-08-04 REL REL G24 [4-(3-BENZYL-4-HYDROXYBENZYL)-3,5-DIMETHYLPHENOXY]ACETIC ACID HOH water Human Thyroid Hormone Receptor beta in complex with agonist GC-1; the crystal structure was solved in our lab, but not deposited at the PDB Other experimental model G24 400 2 G24 G24 462 A G24 401 2 G24 G24 463 A HOH 1 3 HOH HOH 1 A HOH 2 3 HOH HOH 2 A HOH 3 3 HOH HOH 3 A HOH 4 3 HOH HOH 4 A HOH 5 3 HOH HOH 5 A HOH 6 3 HOH HOH 6 A HOH 7 3 HOH HOH 7 A HOH 8 3 HOH HOH 8 A HOH 9 3 HOH HOH 9 A HOH 10 3 HOH HOH 10 A HOH 11 3 HOH HOH 11 A HOH 12 3 HOH HOH 12 A HOH 13 3 HOH HOH 13 A HOH 14 3 HOH HOH 14 A HOH 15 3 HOH HOH 15 A HOH 16 3 HOH HOH 16 A HOH 17 3 HOH HOH 17 A HOH 18 3 HOH HOH 18 A HOH 19 3 HOH HOH 19 A HOH 20 3 HOH HOH 20 A HOH 21 3 HOH HOH 21 A HOH 22 3 HOH HOH 22 A HOH 23 3 HOH HOH 23 A HOH 24 3 HOH HOH 24 A HOH 25 3 HOH HOH 25 A HOH 26 3 HOH HOH 26 A HOH 27 3 HOH HOH 27 A HOH 28 3 HOH HOH 28 A HOH 29 3 HOH HOH 29 A HOH 30 3 HOH HOH 30 A HOH 31 3 HOH HOH 31 A HOH 32 3 HOH HOH 32 A HOH 33 3 HOH HOH 33 A HOH 34 3 HOH HOH 34 A HOH 35 3 HOH HOH 35 A HOH 36 3 HOH HOH 36 A HOH 37 3 HOH HOH 37 A HOH 38 3 HOH HOH 38 A HOH 39 3 HOH HOH 39 A HOH 40 3 HOH HOH 40 A GLY 209 n 1 GLY 209 A HIS 210 n 2 HIS 210 A LYS 211 n 3 LYS 211 A PRO 212 n 4 PRO 212 A GLU 213 n 5 GLU 213 A PRO 214 n 6 PRO 214 A THR 215 n 7 THR 215 A ASP 216 n 8 ASP 216 A GLU 217 n 9 GLU 217 A GLU 218 n 10 GLU 218 A TRP 219 n 11 TRP 219 A GLU 220 n 12 GLU 220 A LEU 221 n 13 LEU 221 A ILE 222 n 14 ILE 222 A LYS 223 n 15 LYS 223 A THR 224 n 16 THR 224 A VAL 225 n 17 VAL 225 A THR 226 n 18 THR 226 A GLU 227 n 19 GLU 227 A ALA 228 n 20 ALA 228 A HIS 229 n 21 HIS 229 A VAL 230 n 22 VAL 230 A ALA 231 n 23 ALA 231 A THR 232 n 24 THR 232 A ASN 233 n 25 ASN 233 A ALA 234 n 26 ALA 234 A GLN 235 n 27 GLN 235 A GLY 236 n 28 GLY 236 A SER 237 n 29 SER 237 A HIS 238 n 30 HIS 238 A TRP 239 n 31 TRP 239 A LYS 240 n 32 LYS 240 A GLN 241 n 33 GLN 241 A LYS 242 n 34 LYS 242 A ARG 243 n 35 ARG 243 A LYS 244 n 36 LYS 244 A PHE 245 n 37 PHE 245 A LEU 246 n 38 LEU 246 A PRO 247 n 39 PRO 247 A n 40 248 A n 41 249 A n 42 250 A n 43 251 A n 44 252 A n 45 253 A n 46 254 A n 47 255 A n 48 256 A n 49 257 A n 50 258 A n 51 259 A n 52 260 A n 53 261 A GLY 262 n 54 GLY 262 A LYS 263 n 55 LYS 263 A VAL 264 n 56 VAL 264 A ASP 265 n 57 ASP 265 A LEU 266 n 58 LEU 266 A GLU 267 n 59 GLU 267 A ALA 268 n 60 ALA 268 A PHE 269 n 61 PHE 269 A SER 270 n 62 SER 270 A HIS 271 n 63 HIS 271 A PHE 272 n 64 PHE 272 A THR 273 n 65 THR 273 A LYS 274 n 66 LYS 274 A ILE 275 n 67 ILE 275 A ILE 276 n 68 ILE 276 A THR 277 n 69 THR 277 A PRO 278 n 70 PRO 278 A ALA 279 n 71 ALA 279 A ILE 280 n 72 ILE 280 A THR 281 n 73 THR 281 A ARG 282 n 74 ARG 282 A VAL 283 n 75 VAL 283 A VAL 284 n 76 VAL 284 A ASP 285 n 77 ASP 285 A PHE 286 n 78 PHE 286 A ALA 287 n 79 ALA 287 A LYS 288 n 80 LYS 288 A LYS 289 n 81 LYS 289 A LEU 290 n 82 LEU 290 A PRO 291 n 83 PRO 291 A MET 292 n 84 MET 292 A PHE 293 n 85 PHE 293 A CYS 294 n 86 CYS 294 A GLU 295 n 87 GLU 295 A LEU 296 n 88 LEU 296 A PRO 297 n 89 PRO 297 A CYS 298 n 90 CYS 298 A GLU 299 n 91 GLU 299 A ASP 300 n 92 ASP 300 A GLN 301 n 93 GLN 301 A ILE 302 n 94 ILE 302 A ILE 303 n 95 ILE 303 A LEU 304 n 96 LEU 304 A LEU 305 n 97 LEU 305 A LYS 306 n 98 LYS 306 A GLY 307 n 99 GLY 307 A CYS 308 n 100 CYS 308 A CYS 309 n 101 CYS 309 A MET 310 n 102 MET 310 A GLU 311 n 103 GLU 311 A ILE 312 n 104 ILE 312 A MET 313 n 105 MET 313 A SER 314 n 106 SER 314 A LEU 315 n 107 LEU 315 A ARG 316 n 108 ARG 316 A ALA 317 n 109 ALA 317 A ALA 318 n 110 ALA 318 A VAL 319 n 111 VAL 319 A ARG 320 n 112 ARG 320 A TYR 321 n 113 TYR 321 A ASP 322 n 114 ASP 322 A PRO 323 n 115 PRO 323 A GLU 324 n 116 GLU 324 A SER 325 n 117 SER 325 A GLU 326 n 118 GLU 326 A THR 327 n 119 THR 327 A LEU 328 n 120 LEU 328 A THR 329 n 121 THR 329 A LEU 330 n 122 LEU 330 A ASN 331 n 123 ASN 331 A GLY 332 n 124 GLY 332 A GLU 333 n 125 GLU 333 A MET 334 n 126 MET 334 A ALA 335 n 127 ALA 335 A VAL 336 n 128 VAL 336 A THR 337 n 129 THR 337 A ARG 338 n 130 ARG 338 A GLY 339 n 131 GLY 339 A GLN 340 n 132 GLN 340 A LEU 341 n 133 LEU 341 A LYS 342 n 134 LYS 342 A ASN 343 n 135 ASN 343 A GLY 344 n 136 GLY 344 A GLY 345 n 137 GLY 345 A LEU 346 n 138 LEU 346 A GLY 347 n 139 GLY 347 A VAL 348 n 140 VAL 348 A VAL 349 n 141 VAL 349 A SER 350 n 142 SER 350 A ASP 351 n 143 ASP 351 A ALA 352 n 144 ALA 352 A ILE 353 n 145 ILE 353 A PHE 354 n 146 PHE 354 A ASP 355 n 147 ASP 355 A LEU 356 n 148 LEU 356 A GLY 357 n 149 GLY 357 A MET 358 n 150 MET 358 A SER 359 n 151 SER 359 A LEU 360 n 152 LEU 360 A SER 361 n 153 SER 361 A SER 362 n 154 SER 362 A PHE 363 n 155 PHE 363 A ASN 364 n 156 ASN 364 A LEU 365 n 157 LEU 365 A ASP 366 n 158 ASP 366 A ASP 367 n 159 ASP 367 A THR 368 n 160 THR 368 A GLU 369 n 161 GLU 369 A VAL 370 n 162 VAL 370 A ALA 371 n 163 ALA 371 A LEU 372 n 164 LEU 372 A LEU 373 n 165 LEU 373 A GLN 374 n 166 GLN 374 A ALA 375 n 167 ALA 375 A VAL 376 n 168 VAL 376 A LEU 377 n 169 LEU 377 A LEU 378 n 170 LEU 378 A MET 379 n 171 MET 379 A SER 380 n 172 SER 380 A SER 381 n 173 SER 381 A ASP 382 n 174 ASP 382 A ARG 383 n 175 ARG 383 A PRO 384 n 176 PRO 384 A GLY 385 n 177 GLY 385 A LEU 386 n 178 LEU 386 A ALA 387 n 179 ALA 387 A CYS 388 n 180 CYS 388 A VAL 389 n 181 VAL 389 A GLU 390 n 182 GLU 390 A ARG 391 n 183 ARG 391 A ILE 392 n 184 ILE 392 A GLU 393 n 185 GLU 393 A LYS 394 n 186 LYS 394 A TYR 395 n 187 TYR 395 A GLN 396 n 188 GLN 396 A ASP 397 n 189 ASP 397 A SER 398 n 190 SER 398 A PHE 399 n 191 PHE 399 A LEU 400 n 192 LEU 400 A LEU 401 n 193 LEU 401 A ALA 402 n 194 ALA 402 A PHE 403 n 195 PHE 403 A GLU 404 n 196 GLU 404 A HIS 405 n 197 HIS 405 A TYR 406 n 198 TYR 406 A ILE 407 n 199 ILE 407 A ASN 408 n 200 ASN 408 A TYR 409 n 201 TYR 409 A ARG 410 n 202 ARG 410 A LYS 411 n 203 LYS 411 A HIS 412 n 204 HIS 412 A HIS 413 n 205 HIS 413 A VAL 414 n 206 VAL 414 A THR 415 n 207 THR 415 A HIS 416 n 208 HIS 416 A PHE 417 n 209 PHE 417 A TRP 418 n 210 TRP 418 A PRO 419 n 211 PRO 419 A LYS 420 n 212 LYS 420 A LEU 421 n 213 LEU 421 A LEU 422 n 214 LEU 422 A MET 423 n 215 MET 423 A LYS 424 n 216 LYS 424 A VAL 425 n 217 VAL 425 A THR 426 n 218 THR 426 A ASP 427 n 219 ASP 427 A LEU 428 n 220 LEU 428 A ARG 429 n 221 ARG 429 A MET 430 n 222 MET 430 A ILE 431 n 223 ILE 431 A GLY 432 n 224 GLY 432 A ALA 433 n 225 ALA 433 A CYS 434 n 226 CYS 434 A HIS 435 n 227 HIS 435 A ALA 436 n 228 ALA 436 A SER 437 n 229 SER 437 A ARG 438 n 230 ARG 438 A PHE 439 n 231 PHE 439 A LEU 440 n 232 LEU 440 A HIS 441 n 233 HIS 441 A MET 442 n 234 MET 442 A LYS 443 n 235 LYS 443 A VAL 444 n 236 VAL 444 A GLU 445 n 237 GLU 445 A CYS 446 n 238 CYS 446 A PRO 447 n 239 PRO 447 A THR 448 n 240 THR 448 A GLU 449 n 241 GLU 449 A LEU 450 n 242 LEU 450 A PHE 451 n 243 PHE 451 A PRO 452 n 244 PRO 452 A PRO 453 n 245 PRO 453 A LEU 454 n 246 LEU 454 A PHE 455 n 247 PHE 455 A LEU 456 n 248 LEU 456 A GLU 457 n 249 GLU 457 A VAL 458 n 250 VAL 458 A PHE 459 n 251 PHE 459 A GLU 460 n 252 GLU 460 A ASP 461 n 253 ASP 461 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 330 A N LEU 122 A O MET 334 A O MET 126 1 A CG GLN 241 A CG GLN 33 1 Y 1 A CD GLN 241 A CD GLN 33 1 Y 1 A OE1 GLN 241 A OE1 GLN 33 1 Y 1 A NE2 GLN 241 A NE2 GLN 33 1 Y 1 A CG GLU 324 A CG GLU 116 1 Y 1 A CD GLU 324 A CD GLU 116 1 Y 1 A OE1 GLU 324 A OE1 GLU 116 1 Y 1 A OE2 GLU 324 A OE2 GLU 116 1 Y 1 A CG HIS 441 A CG HIS 233 1 Y 1 A ND1 HIS 441 A ND1 HIS 233 1 Y 1 A CD2 HIS 441 A CD2 HIS 233 1 Y 1 A CE1 HIS 441 A CE1 HIS 233 1 Y 1 A NE2 HIS 441 A NE2 HIS 233 1 Y 1 A GLU 248 A GLU 40 1 Y 1 A ASP 249 A ASP 41 1 Y 1 A ILE 250 A ILE 42 1 Y 1 A GLY 251 A GLY 43 1 Y 1 A GLN 252 A GLN 44 1 Y 1 A ALA 253 A ALA 45 1 Y 1 A PRO 254 A PRO 46 1 Y 1 A ILE 255 A ILE 47 1 Y 1 A VAL 256 A VAL 48 1 Y 1 A ASN 257 A ASN 49 1 Y 1 A ALA 258 A ALA 50 1 Y 1 A PRO 259 A PRO 51 1 Y 1 A GLU 260 A GLU 52 1 Y 1 A GLY 261 A GLY 53 1 Y 1 A GLY 236 20.36 1 A A GLY SER 236 237 -132.40 1 A A LYS VAL 263 264 138.71 1 3.03 0.50 120.30 123.33 A A A NE CZ NH1 ARG ARG ARG 282 282 282 N 1 A LYS 211 59.18 89.59 1 A ALA 234 -55.95 -72.36 1 A HIS 238 -150.03 45.59 1 A TRP 239 -62.26 61.58 1 A LYS 240 -142.86 -36.02 1 A LYS 242 -143.59 -67.54 1 A GLU 333 -127.19 -55.56 1 A ASN 364 56.94 73.53 1 A MET 379 -80.03 44.23 1 A LYS 411 54.48 73.75 60.08 8.9 14.57 0.00 8.9 0.00 -17.81 0.264 0.216 0.228 0.228 2.8 24.47 500 10075 9368 93.0 RANDOM 1 Isotropic THROUGHOUT 0.0 3.0 MOLECULAR REPLACEMENT Human Thyroid Hormone Receptor beta in complex with agonist GC-1; the crystal structure was solved in our lab, but not deposited at the PDB Engh & Huber 0.45 0.34 6.00 0.48 0.33 2.8 24.47 40 1988 56 0 1892 0.011 1.6 1.31 21.7 0.369 0.055 0.281 2.93 45 917 76.7 0.38 0.048 0.291 3.08 62 1141 93.8 0.352 0.044 0.262 3.27 65 1174 95.4 0.295 0.035 0.234 3.53 70 1179 95.5 0.279 0.040 0.224 3.88 48 1163 95.5 0.271 0.034 0.194 4.44 63 1200 94.4 0.215 0.027 0.195 5.58 64 1248 96.5 0.228 0.025 0.232 24.47 83 1346 94.4 59.8 2.8 24.47 1Q4X 10076 9368 0.0 3.0 0.069 0.069 1 15.8 93.0 2.8 2.98 81.5 data reduction DENZO data scaling SCALEPACK refinement CNS phasing CNS Crystal Structure of Human Thyroid Hormone Receptor beta LBD in complex with specific agonist GC-24 1 N N 2 N N 2 N N 3 N N A THR 215 A THR 7 HELX_P A ASN 233 A ASN 25 1 1 19 A ASP 265 A ASP 57 HELX_P A LYS 289 A LYS 81 1 2 25 A LEU 290 A LEU 82 HELX_P A GLU 295 A GLU 87 1 3 6 A PRO 297 A PRO 89 HELX_P A VAL 319 A VAL 111 1 4 23 A THR 337 A THR 129 HELX_P A GLY 344 A GLY 136 1 5 8 A GLY 347 A GLY 139 HELX_P A SER 362 A SER 154 1 6 16 A ASP 366 A ASP 158 HELX_P A MET 379 A MET 171 1 7 14 A CYS 388 A CYS 180 HELX_P A LYS 411 A LYS 203 1 8 24 A HIS 416 A HIS 208 HELX_P A VAL 444 A VAL 236 1 9 29 A PRO 452 A PRO 244 HELX_P A GLU 460 A GLU 252 1 10 9 TRANSCRIPTION conformational change in two framework helices upon ligand binding, TRANSCRIPTION THB1_HUMAN UNP 1 209 P10828 GHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAK KLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDT EVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPT ELFPPLFLEVFED 209 461 1Q4X 209 461 P10828 A 1 1 253 2 anti-parallel A LEU 328 A LEU 120 A LEU 330 A LEU 122 A MET 334 A MET 126 A VAL 336 A VAL 128 BINDING SITE FOR RESIDUE G24 A 462 A G24 462 Software 12 BINDING SITE FOR RESIDUE G24 A 463 A G24 463 Software 9 A PHE 269 A PHE 61 12 1_555 A PHE 272 A PHE 64 12 1_555 A THR 273 A THR 65 12 1_555 A ALA 279 A ALA 71 12 1_555 A ARG 316 A ARG 108 12 1_555 A ARG 320 A ARG 112 12 1_555 A ASN 331 A ASN 123 12 1_555 A GLY 332 A GLY 124 12 1_555 A LEU 346 A LEU 138 12 1_555 A HIS 435 A HIS 227 12 1_555 A PHE 451 A PHE 243 12 1_555 A PHE 455 A PHE 247 12 1_555 A HOH 25 D HOH 9 1_555 A LEU 365 A LEU 157 9 1_555 A ASP 366 A ASP 158 9 1_555 A VAL 376 A VAL 168 9 9_655 A SER 380 A SER 172 9 9_655 A SER 381 A SER 173 9 9_655 A GLU 393 A GLU 185 9 9_655 A GLN 396 A GLN 188 9 9_655 A ARG 429 A ARG 221 9 9_655 179 P 65 2 2