0.017677
0.010206
0.000000
0.000000
0.020412
0.000000
0.000000
0.000000
0.002564
0.00000
0.00000
0.00000
Borngraeber, S.
Budny, M.J.
Chiellini, G.
Cunha-Lima, S.T.
Togashi, M.
Webb, P.
Baxter, J.D.
Scanlan, T.S.
Fletterick, R.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
56.570
56.570
390.050
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C24 H24 O4
376.445
[4-(3-BENZYL-4-HYDROXYBENZYL)-3,5-DIMETHYLPHENOXY]ACETIC ACID
GC-24
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
Y
88
N
C
Y
89
N
C
Y
90
N
C
Y
91
N
C
Y
92
N
C
Y
93
N
C
N
94
N
C
Y
95
N
C
Y
96
N
C
Y
97
N
C
N
98
N
O
Y
99
N
C
Y
100
N
C
Y
101
N
C
N
102
N
C
Y
103
N
C
Y
104
N
C
N
105
N
C
Y
106
N
C
Y
107
N
C
N
108
N
C
Y
109
N
C
Y
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
O
N
115
N
O
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
N
N
141
S
C
N
142
N
C
N
143
N
O
N
144
N
C
N
145
N
C
N
146
N
C
N
147
N
O
N
148
N
N
N
149
N
O
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
S
C
N
162
N
C
N
163
N
O
N
164
N
C
N
165
N
C
N
166
N
C
N
167
N
O
N
168
N
O
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
N
N
180
N
C
N
181
N
C
N
182
N
O
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
N
N
190
S
C
N
191
N
C
N
192
N
O
N
193
N
C
Y
194
N
C
Y
195
N
N
Y
196
N
C
Y
197
N
C
Y
198
N
N
N
199
N
O
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
O
N
211
N
H
N
212
N
H
N
213
N
N
N
214
S
C
N
215
N
C
N
216
N
O
N
217
S
C
N
218
N
C
N
219
N
C
N
220
N
C
N
221
N
O
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
N
N
236
S
C
N
237
N
C
N
238
N
O
N
239
N
C
N
240
N
C
N
241
N
C
N
242
N
C
N
243
N
O
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
N
N
258
S
C
N
259
N
C
N
260
N
O
N
261
N
C
N
262
N
C
N
263
N
C
N
264
N
C
N
265
N
N
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
N
N
283
S
C
N
284
N
C
N
285
N
O
N
286
N
C
N
287
N
C
N
288
N
S
N
289
N
C
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
N
N
303
S
C
N
304
N
C
N
305
N
O
N
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
N
C
N
330
N
C
N
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
N
N
343
S
C
N
344
N
C
N
345
N
O
N
346
N
C
N
347
N
O
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
R
C
N
361
N
O
N
362
N
C
N
363
N
O
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
N
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
N
387
N
O
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
N
N
401
S
C
N
402
N
C
N
403
N
O
N
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
N
411
N
O
N
412
N
O
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
N
N
425
S
C
N
426
N
C
N
427
N
O
N
428
N
C
N
429
N
C
N
430
N
C
N
431
N
O
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
Y
83
N
doub
Y
84
N
sing
N
85
N
sing
Y
86
N
sing
N
87
N
sing
Y
88
N
doub
N
89
N
sing
Y
90
N
sing
N
91
N
sing
Y
92
N
doub
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
Y
98
N
doub
Y
99
N
sing
Y
100
N
sing
N
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
sing
Y
105
N
sing
N
106
N
sing
Y
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
Y
113
N
doub
Y
114
N
sing
N
115
N
sing
Y
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
Y
120
N
doub
N
121
N
sing
N
122
N
sing
Y
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
Y
194
N
sing
Y
195
N
doub
Y
196
N
doub
N
197
N
sing
Y
198
N
sing
N
199
N
sing
Y
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
Y
302
N
doub
Y
303
N
sing
Y
304
N
sing
N
305
N
sing
Y
306
N
doub
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
Y
371
N
doub
Y
372
N
sing
Y
373
N
sing
N
374
N
sing
Y
375
N
doub
Y
376
N
sing
Y
377
N
sing
N
378
N
sing
Y
379
N
sing
Y
380
N
doub
N
381
N
sing
Y
382
N
doub
N
383
N
sing
Y
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
Y
399
N
doub
Y
400
N
sing
Y
401
N
sing
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
doub
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
100
15358
15363
10.1073/pnas.2136689100
14673100
Ligand selectivity by seeking hydrophobicity in thyroid hormone receptor.
2003
10.2210/pdb1q4x/pdb
pdb_00001q4x
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
2002-02-02
ADSC QUANTUM 4
DOUBLE CRYSTAL
SINGLE WAVELENGTH
M
x-ray
1
1.127
1.0
8.3.1
ALS
1.127
SYNCHROTRON
ALS BEAMLINE 8.3.1
28582.080
Thyroid hormone receptor beta-1
Ligand Binding Domain
1
man
polymer
376.445
[4-(3-BENZYL-4-HYDROXYBENZYL)-3,5-DIMETHYLPHENOXY]ACETIC ACID
2
syn
non-polymer
18.015
water
40
nat
water
no
no
GHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAK
KLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDT
EVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPT
ELFPPLFLEVFED
GHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAK
KLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDT
EVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPT
ELFPPLFLEVFED
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
Escherichia coli
sample
THRB OR NR1A2 OR ERBA2 OR THR1
9606
Homo sapiens
511693
Escherichia coli BL21
BL21
plasmid
pET28
1
3.15
60.95
VAPOR DIFFUSION, SITTING DROP
4.9
PEG 3350, sodium acetate, glucose, cymal-2, pH 4.9, VAPOR DIFFUSION, SITTING DROP, temperature 291.0K
291.0
chem_comp_atom
chem_comp_bond
database_2
struct_site
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2004-02-03
1
1
2008-04-29
1
2
2011-07-13
1
3
2024-02-14
1
4
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2003-08-04
REL
REL
G24
[4-(3-BENZYL-4-HYDROXYBENZYL)-3,5-DIMETHYLPHENOXY]ACETIC ACID
HOH
water
Human Thyroid Hormone Receptor beta in complex with agonist GC-1; the crystal structure was solved in our lab, but not deposited at the PDB
Other
experimental model
G24
400
2
G24
G24
462
A
G24
401
2
G24
G24
463
A
HOH
1
3
HOH
HOH
1
A
HOH
2
3
HOH
HOH
2
A
HOH
3
3
HOH
HOH
3
A
HOH
4
3
HOH
HOH
4
A
HOH
5
3
HOH
HOH
5
A
HOH
6
3
HOH
HOH
6
A
HOH
7
3
HOH
HOH
7
A
HOH
8
3
HOH
HOH
8
A
HOH
9
3
HOH
HOH
9
A
HOH
10
3
HOH
HOH
10
A
HOH
11
3
HOH
HOH
11
A
HOH
12
3
HOH
HOH
12
A
HOH
13
3
HOH
HOH
13
A
HOH
14
3
HOH
HOH
14
A
HOH
15
3
HOH
HOH
15
A
HOH
16
3
HOH
HOH
16
A
HOH
17
3
HOH
HOH
17
A
HOH
18
3
HOH
HOH
18
A
HOH
19
3
HOH
HOH
19
A
HOH
20
3
HOH
HOH
20
A
HOH
21
3
HOH
HOH
21
A
HOH
22
3
HOH
HOH
22
A
HOH
23
3
HOH
HOH
23
A
HOH
24
3
HOH
HOH
24
A
HOH
25
3
HOH
HOH
25
A
HOH
26
3
HOH
HOH
26
A
HOH
27
3
HOH
HOH
27
A
HOH
28
3
HOH
HOH
28
A
HOH
29
3
HOH
HOH
29
A
HOH
30
3
HOH
HOH
30
A
HOH
31
3
HOH
HOH
31
A
HOH
32
3
HOH
HOH
32
A
HOH
33
3
HOH
HOH
33
A
HOH
34
3
HOH
HOH
34
A
HOH
35
3
HOH
HOH
35
A
HOH
36
3
HOH
HOH
36
A
HOH
37
3
HOH
HOH
37
A
HOH
38
3
HOH
HOH
38
A
HOH
39
3
HOH
HOH
39
A
HOH
40
3
HOH
HOH
40
A
GLY
209
n
1
GLY
209
A
HIS
210
n
2
HIS
210
A
LYS
211
n
3
LYS
211
A
PRO
212
n
4
PRO
212
A
GLU
213
n
5
GLU
213
A
PRO
214
n
6
PRO
214
A
THR
215
n
7
THR
215
A
ASP
216
n
8
ASP
216
A
GLU
217
n
9
GLU
217
A
GLU
218
n
10
GLU
218
A
TRP
219
n
11
TRP
219
A
GLU
220
n
12
GLU
220
A
LEU
221
n
13
LEU
221
A
ILE
222
n
14
ILE
222
A
LYS
223
n
15
LYS
223
A
THR
224
n
16
THR
224
A
VAL
225
n
17
VAL
225
A
THR
226
n
18
THR
226
A
GLU
227
n
19
GLU
227
A
ALA
228
n
20
ALA
228
A
HIS
229
n
21
HIS
229
A
VAL
230
n
22
VAL
230
A
ALA
231
n
23
ALA
231
A
THR
232
n
24
THR
232
A
ASN
233
n
25
ASN
233
A
ALA
234
n
26
ALA
234
A
GLN
235
n
27
GLN
235
A
GLY
236
n
28
GLY
236
A
SER
237
n
29
SER
237
A
HIS
238
n
30
HIS
238
A
TRP
239
n
31
TRP
239
A
LYS
240
n
32
LYS
240
A
GLN
241
n
33
GLN
241
A
LYS
242
n
34
LYS
242
A
ARG
243
n
35
ARG
243
A
LYS
244
n
36
LYS
244
A
PHE
245
n
37
PHE
245
A
LEU
246
n
38
LEU
246
A
PRO
247
n
39
PRO
247
A
n
40
248
A
n
41
249
A
n
42
250
A
n
43
251
A
n
44
252
A
n
45
253
A
n
46
254
A
n
47
255
A
n
48
256
A
n
49
257
A
n
50
258
A
n
51
259
A
n
52
260
A
n
53
261
A
GLY
262
n
54
GLY
262
A
LYS
263
n
55
LYS
263
A
VAL
264
n
56
VAL
264
A
ASP
265
n
57
ASP
265
A
LEU
266
n
58
LEU
266
A
GLU
267
n
59
GLU
267
A
ALA
268
n
60
ALA
268
A
PHE
269
n
61
PHE
269
A
SER
270
n
62
SER
270
A
HIS
271
n
63
HIS
271
A
PHE
272
n
64
PHE
272
A
THR
273
n
65
THR
273
A
LYS
274
n
66
LYS
274
A
ILE
275
n
67
ILE
275
A
ILE
276
n
68
ILE
276
A
THR
277
n
69
THR
277
A
PRO
278
n
70
PRO
278
A
ALA
279
n
71
ALA
279
A
ILE
280
n
72
ILE
280
A
THR
281
n
73
THR
281
A
ARG
282
n
74
ARG
282
A
VAL
283
n
75
VAL
283
A
VAL
284
n
76
VAL
284
A
ASP
285
n
77
ASP
285
A
PHE
286
n
78
PHE
286
A
ALA
287
n
79
ALA
287
A
LYS
288
n
80
LYS
288
A
LYS
289
n
81
LYS
289
A
LEU
290
n
82
LEU
290
A
PRO
291
n
83
PRO
291
A
MET
292
n
84
MET
292
A
PHE
293
n
85
PHE
293
A
CYS
294
n
86
CYS
294
A
GLU
295
n
87
GLU
295
A
LEU
296
n
88
LEU
296
A
PRO
297
n
89
PRO
297
A
CYS
298
n
90
CYS
298
A
GLU
299
n
91
GLU
299
A
ASP
300
n
92
ASP
300
A
GLN
301
n
93
GLN
301
A
ILE
302
n
94
ILE
302
A
ILE
303
n
95
ILE
303
A
LEU
304
n
96
LEU
304
A
LEU
305
n
97
LEU
305
A
LYS
306
n
98
LYS
306
A
GLY
307
n
99
GLY
307
A
CYS
308
n
100
CYS
308
A
CYS
309
n
101
CYS
309
A
MET
310
n
102
MET
310
A
GLU
311
n
103
GLU
311
A
ILE
312
n
104
ILE
312
A
MET
313
n
105
MET
313
A
SER
314
n
106
SER
314
A
LEU
315
n
107
LEU
315
A
ARG
316
n
108
ARG
316
A
ALA
317
n
109
ALA
317
A
ALA
318
n
110
ALA
318
A
VAL
319
n
111
VAL
319
A
ARG
320
n
112
ARG
320
A
TYR
321
n
113
TYR
321
A
ASP
322
n
114
ASP
322
A
PRO
323
n
115
PRO
323
A
GLU
324
n
116
GLU
324
A
SER
325
n
117
SER
325
A
GLU
326
n
118
GLU
326
A
THR
327
n
119
THR
327
A
LEU
328
n
120
LEU
328
A
THR
329
n
121
THR
329
A
LEU
330
n
122
LEU
330
A
ASN
331
n
123
ASN
331
A
GLY
332
n
124
GLY
332
A
GLU
333
n
125
GLU
333
A
MET
334
n
126
MET
334
A
ALA
335
n
127
ALA
335
A
VAL
336
n
128
VAL
336
A
THR
337
n
129
THR
337
A
ARG
338
n
130
ARG
338
A
GLY
339
n
131
GLY
339
A
GLN
340
n
132
GLN
340
A
LEU
341
n
133
LEU
341
A
LYS
342
n
134
LYS
342
A
ASN
343
n
135
ASN
343
A
GLY
344
n
136
GLY
344
A
GLY
345
n
137
GLY
345
A
LEU
346
n
138
LEU
346
A
GLY
347
n
139
GLY
347
A
VAL
348
n
140
VAL
348
A
VAL
349
n
141
VAL
349
A
SER
350
n
142
SER
350
A
ASP
351
n
143
ASP
351
A
ALA
352
n
144
ALA
352
A
ILE
353
n
145
ILE
353
A
PHE
354
n
146
PHE
354
A
ASP
355
n
147
ASP
355
A
LEU
356
n
148
LEU
356
A
GLY
357
n
149
GLY
357
A
MET
358
n
150
MET
358
A
SER
359
n
151
SER
359
A
LEU
360
n
152
LEU
360
A
SER
361
n
153
SER
361
A
SER
362
n
154
SER
362
A
PHE
363
n
155
PHE
363
A
ASN
364
n
156
ASN
364
A
LEU
365
n
157
LEU
365
A
ASP
366
n
158
ASP
366
A
ASP
367
n
159
ASP
367
A
THR
368
n
160
THR
368
A
GLU
369
n
161
GLU
369
A
VAL
370
n
162
VAL
370
A
ALA
371
n
163
ALA
371
A
LEU
372
n
164
LEU
372
A
LEU
373
n
165
LEU
373
A
GLN
374
n
166
GLN
374
A
ALA
375
n
167
ALA
375
A
VAL
376
n
168
VAL
376
A
LEU
377
n
169
LEU
377
A
LEU
378
n
170
LEU
378
A
MET
379
n
171
MET
379
A
SER
380
n
172
SER
380
A
SER
381
n
173
SER
381
A
ASP
382
n
174
ASP
382
A
ARG
383
n
175
ARG
383
A
PRO
384
n
176
PRO
384
A
GLY
385
n
177
GLY
385
A
LEU
386
n
178
LEU
386
A
ALA
387
n
179
ALA
387
A
CYS
388
n
180
CYS
388
A
VAL
389
n
181
VAL
389
A
GLU
390
n
182
GLU
390
A
ARG
391
n
183
ARG
391
A
ILE
392
n
184
ILE
392
A
GLU
393
n
185
GLU
393
A
LYS
394
n
186
LYS
394
A
TYR
395
n
187
TYR
395
A
GLN
396
n
188
GLN
396
A
ASP
397
n
189
ASP
397
A
SER
398
n
190
SER
398
A
PHE
399
n
191
PHE
399
A
LEU
400
n
192
LEU
400
A
LEU
401
n
193
LEU
401
A
ALA
402
n
194
ALA
402
A
PHE
403
n
195
PHE
403
A
GLU
404
n
196
GLU
404
A
HIS
405
n
197
HIS
405
A
TYR
406
n
198
TYR
406
A
ILE
407
n
199
ILE
407
A
ASN
408
n
200
ASN
408
A
TYR
409
n
201
TYR
409
A
ARG
410
n
202
ARG
410
A
LYS
411
n
203
LYS
411
A
HIS
412
n
204
HIS
412
A
HIS
413
n
205
HIS
413
A
VAL
414
n
206
VAL
414
A
THR
415
n
207
THR
415
A
HIS
416
n
208
HIS
416
A
PHE
417
n
209
PHE
417
A
TRP
418
n
210
TRP
418
A
PRO
419
n
211
PRO
419
A
LYS
420
n
212
LYS
420
A
LEU
421
n
213
LEU
421
A
LEU
422
n
214
LEU
422
A
MET
423
n
215
MET
423
A
LYS
424
n
216
LYS
424
A
VAL
425
n
217
VAL
425
A
THR
426
n
218
THR
426
A
ASP
427
n
219
ASP
427
A
LEU
428
n
220
LEU
428
A
ARG
429
n
221
ARG
429
A
MET
430
n
222
MET
430
A
ILE
431
n
223
ILE
431
A
GLY
432
n
224
GLY
432
A
ALA
433
n
225
ALA
433
A
CYS
434
n
226
CYS
434
A
HIS
435
n
227
HIS
435
A
ALA
436
n
228
ALA
436
A
SER
437
n
229
SER
437
A
ARG
438
n
230
ARG
438
A
PHE
439
n
231
PHE
439
A
LEU
440
n
232
LEU
440
A
HIS
441
n
233
HIS
441
A
MET
442
n
234
MET
442
A
LYS
443
n
235
LYS
443
A
VAL
444
n
236
VAL
444
A
GLU
445
n
237
GLU
445
A
CYS
446
n
238
CYS
446
A
PRO
447
n
239
PRO
447
A
THR
448
n
240
THR
448
A
GLU
449
n
241
GLU
449
A
LEU
450
n
242
LEU
450
A
PHE
451
n
243
PHE
451
A
PRO
452
n
244
PRO
452
A
PRO
453
n
245
PRO
453
A
LEU
454
n
246
LEU
454
A
PHE
455
n
247
PHE
455
A
LEU
456
n
248
LEU
456
A
GLU
457
n
249
GLU
457
A
VAL
458
n
250
VAL
458
A
PHE
459
n
251
PHE
459
A
GLU
460
n
252
GLU
460
A
ASP
461
n
253
ASP
461
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
330
A
N
LEU
122
A
O
MET
334
A
O
MET
126
1
A
CG
GLN
241
A
CG
GLN
33
1
Y
1
A
CD
GLN
241
A
CD
GLN
33
1
Y
1
A
OE1
GLN
241
A
OE1
GLN
33
1
Y
1
A
NE2
GLN
241
A
NE2
GLN
33
1
Y
1
A
CG
GLU
324
A
CG
GLU
116
1
Y
1
A
CD
GLU
324
A
CD
GLU
116
1
Y
1
A
OE1
GLU
324
A
OE1
GLU
116
1
Y
1
A
OE2
GLU
324
A
OE2
GLU
116
1
Y
1
A
CG
HIS
441
A
CG
HIS
233
1
Y
1
A
ND1
HIS
441
A
ND1
HIS
233
1
Y
1
A
CD2
HIS
441
A
CD2
HIS
233
1
Y
1
A
CE1
HIS
441
A
CE1
HIS
233
1
Y
1
A
NE2
HIS
441
A
NE2
HIS
233
1
Y
1
A
GLU
248
A
GLU
40
1
Y
1
A
ASP
249
A
ASP
41
1
Y
1
A
ILE
250
A
ILE
42
1
Y
1
A
GLY
251
A
GLY
43
1
Y
1
A
GLN
252
A
GLN
44
1
Y
1
A
ALA
253
A
ALA
45
1
Y
1
A
PRO
254
A
PRO
46
1
Y
1
A
ILE
255
A
ILE
47
1
Y
1
A
VAL
256
A
VAL
48
1
Y
1
A
ASN
257
A
ASN
49
1
Y
1
A
ALA
258
A
ALA
50
1
Y
1
A
PRO
259
A
PRO
51
1
Y
1
A
GLU
260
A
GLU
52
1
Y
1
A
GLY
261
A
GLY
53
1
Y
1
A
GLY
236
20.36
1
A
A
GLY
SER
236
237
-132.40
1
A
A
LYS
VAL
263
264
138.71
1
3.03
0.50
120.30
123.33
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
282
282
282
N
1
A
LYS
211
59.18
89.59
1
A
ALA
234
-55.95
-72.36
1
A
HIS
238
-150.03
45.59
1
A
TRP
239
-62.26
61.58
1
A
LYS
240
-142.86
-36.02
1
A
LYS
242
-143.59
-67.54
1
A
GLU
333
-127.19
-55.56
1
A
ASN
364
56.94
73.53
1
A
MET
379
-80.03
44.23
1
A
LYS
411
54.48
73.75
60.08
8.9
14.57
0.00
8.9
0.00
-17.81
0.264
0.216
0.228
0.228
2.8
24.47
500
10075
9368
93.0
RANDOM
1
Isotropic
THROUGHOUT
0.0
3.0
MOLECULAR REPLACEMENT
Human Thyroid Hormone Receptor beta in complex with agonist GC-1; the crystal structure was solved in our lab, but not deposited at the PDB
Engh & Huber
0.45
0.34
6.00
0.48
0.33
2.8
24.47
40
1988
56
0
1892
0.011
1.6
1.31
21.7
0.369
0.055
0.281
2.93
45
917
76.7
0.38
0.048
0.291
3.08
62
1141
93.8
0.352
0.044
0.262
3.27
65
1174
95.4
0.295
0.035
0.234
3.53
70
1179
95.5
0.279
0.040
0.224
3.88
48
1163
95.5
0.271
0.034
0.194
4.44
63
1200
94.4
0.215
0.027
0.195
5.58
64
1248
96.5
0.228
0.025
0.232
24.47
83
1346
94.4
59.8
2.8
24.47
1Q4X
10076
9368
0.0
3.0
0.069
0.069
1
15.8
93.0
2.8
2.98
81.5
data reduction
DENZO
data scaling
SCALEPACK
refinement
CNS
phasing
CNS
Crystal Structure of Human Thyroid Hormone Receptor beta LBD in complex with specific agonist GC-24
1
N
N
2
N
N
2
N
N
3
N
N
A
THR
215
A
THR
7
HELX_P
A
ASN
233
A
ASN
25
1
1
19
A
ASP
265
A
ASP
57
HELX_P
A
LYS
289
A
LYS
81
1
2
25
A
LEU
290
A
LEU
82
HELX_P
A
GLU
295
A
GLU
87
1
3
6
A
PRO
297
A
PRO
89
HELX_P
A
VAL
319
A
VAL
111
1
4
23
A
THR
337
A
THR
129
HELX_P
A
GLY
344
A
GLY
136
1
5
8
A
GLY
347
A
GLY
139
HELX_P
A
SER
362
A
SER
154
1
6
16
A
ASP
366
A
ASP
158
HELX_P
A
MET
379
A
MET
171
1
7
14
A
CYS
388
A
CYS
180
HELX_P
A
LYS
411
A
LYS
203
1
8
24
A
HIS
416
A
HIS
208
HELX_P
A
VAL
444
A
VAL
236
1
9
29
A
PRO
452
A
PRO
244
HELX_P
A
GLU
460
A
GLU
252
1
10
9
TRANSCRIPTION
conformational change in two framework helices upon ligand binding, TRANSCRIPTION
THB1_HUMAN
UNP
1
209
P10828
GHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAK
KLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDT
EVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPT
ELFPPLFLEVFED
209
461
1Q4X
209
461
P10828
A
1
1
253
2
anti-parallel
A
LEU
328
A
LEU
120
A
LEU
330
A
LEU
122
A
MET
334
A
MET
126
A
VAL
336
A
VAL
128
BINDING SITE FOR RESIDUE G24 A 462
A
G24
462
Software
12
BINDING SITE FOR RESIDUE G24 A 463
A
G24
463
Software
9
A
PHE
269
A
PHE
61
12
1_555
A
PHE
272
A
PHE
64
12
1_555
A
THR
273
A
THR
65
12
1_555
A
ALA
279
A
ALA
71
12
1_555
A
ARG
316
A
ARG
108
12
1_555
A
ARG
320
A
ARG
112
12
1_555
A
ASN
331
A
ASN
123
12
1_555
A
GLY
332
A
GLY
124
12
1_555
A
LEU
346
A
LEU
138
12
1_555
A
HIS
435
A
HIS
227
12
1_555
A
PHE
451
A
PHE
243
12
1_555
A
PHE
455
A
PHE
247
12
1_555
A
HOH
25
D
HOH
9
1_555
A
LEU
365
A
LEU
157
9
1_555
A
ASP
366
A
ASP
158
9
1_555
A
VAL
376
A
VAL
168
9
9_655
A
SER
380
A
SER
172
9
9_655
A
SER
381
A
SER
173
9
9_655
A
GLU
393
A
GLU
185
9
9_655
A
GLN
396
A
GLN
188
9
9_655
A
ARG
429
A
ARG
221
9
9_655
179
P 65 2 2