1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Rosengren, K.J.
Clark, R.
Daly, N.L.
Goransson, U.
Jones, A.
Craik, D.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
125
12464
12474
10.1021/ja0367703
14531690
Microcin J25 has a threaded sidechain-to-backbone ring structure and not a head-to-tail cyclized backbone.
2003
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
x-ray
1
1.0
2126.348
microcin J25
1
man
polymer
no
no
GGAGHVPEYFVGIGTPISFYG
GGAGHVPEYFVGIGTPISFYG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
mcjA
562
Escherichia coli
562
Escherichia coli
MC4100
plasmid
pTUC202
repository
Initial release
Version format compliance
Version format compliance
Non-polymer description
Structure summary
Other
1
0
2003-12-16
1
1
2008-04-29
1
2
2011-07-13
1
3
2011-07-27
1
4
2012-12-12
MICROCIN FROM ESCHERICHIA COLI
RCSB
Y
RCSB
2003-08-14
REL
REL
Inhibitor
Microcin J25
Polypeptide
This structure was determined using standard 2D homonuclear techniques.
structures with the least restraint violations,structures with the lowest energy
50
20
2D TOCSY
2D NOESY
E-COSY
0
ambient
298
K
Preliminary structures were generated by torsion angle dynamics using CNS. Structures were subsequently subjected to further molecular dynamics and energy minimisation in a water shell using protocols from ARIA within CNS.
Structures were calculated by torsion angle dynamics and refined in a water shell using Cartesian dynamics within CNS.
1
lowest energy
0.3 mg of microcin J25
100% CD3OH
Bruker
collection
XWINNMR
3.1
Eccles, C., Guntert, P., Billeter, M. and Wuthrich, K.
data analysis
XEASY
1.3.7
Guntert, P., Mumenthaler, C. and Wuthrich, K.
structure solution
DYANA
1.5
Brunger, A.T. et al.
refinement
CNS
1.0
750
Bruker
DMX
500
Bruker
Avance
GLY
1
n
1
GLY
1
A
GLY
2
n
2
GLY
2
A
ALA
3
n
3
ALA
3
A
GLY
4
n
4
GLY
4
A
HIS
5
n
5
HIS
5
A
VAL
6
n
6
VAL
6
A
PRO
7
n
7
PRO
7
A
GLU
8
n
8
GLU
8
A
TYR
9
n
9
TYR
9
A
PHE
10
n
10
PHE
10
A
VAL
11
n
11
VAL
11
A
GLY
12
n
12
GLY
12
A
ILE
13
n
13
ILE
13
A
GLY
14
n
14
GLY
14
A
THR
15
n
15
THR
15
A
PRO
16
n
16
PRO
16
A
ILE
17
n
17
ILE
17
A
SER
18
n
18
SER
18
A
PHE
19
n
19
PHE
19
A
TYR
20
n
20
TYR
20
A
GLY
21
n
21
GLY
21
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
HD1
O
HIS
GLY
5
21
1.58
4
A
A
HD1
O
HIS
GLY
5
21
1.59
7
A
A
HD1
O
HIS
GLY
5
21
1.59
1
A
GLU
8
-95.34
-75.57
1
A
ILE
13
-86.75
32.65
1
A
SER
18
-175.92
146.48
1
A
TYR
20
-122.71
-62.66
2
A
GLU
8
-97.13
-72.11
2
A
ILE
13
-87.50
33.83
2
A
SER
18
179.68
150.08
3
A
ALA
3
-145.38
47.89
3
A
GLU
8
-95.26
-72.28
3
A
ILE
13
-84.41
30.53
3
A
SER
18
179.83
152.92
3
A
TYR
20
-90.06
-115.72
4
A
GLU
8
-91.67
-72.41
4
A
ILE
13
-82.22
32.61
4
A
SER
18
-176.20
148.66
5
A
GLU
8
-89.09
-73.95
5
A
ILE
13
-84.06
31.48
5
A
SER
18
-171.58
144.58
6
A
GLU
8
-91.63
-68.93
6
A
ILE
13
-82.41
33.32
6
A
SER
18
179.63
149.13
7
A
GLU
8
-91.91
-70.93
7
A
ILE
13
-83.11
32.26
8
A
GLU
8
-95.67
-71.66
8
A
ILE
13
-156.16
46.69
8
A
SER
18
179.57
150.28
9
A
ALA
3
-148.73
46.24
9
A
GLU
8
-98.50
-72.88
9
A
ILE
13
-155.75
41.70
9
A
SER
18
179.85
148.25
9
A
TYR
20
-84.37
-114.54
10
A
GLU
8
-97.36
-74.40
10
A
ILE
13
-82.94
31.62
11
A
ALA
3
-142.40
48.40
11
A
GLU
8
-93.40
-73.81
11
A
ILE
13
-170.91
37.75
11
A
SER
18
-179.65
145.77
12
A
ALA
3
-142.68
48.34
12
A
GLU
8
-93.72
-74.25
12
A
ILE
13
-170.99
38.31
12
A
SER
18
-179.89
146.37
13
A
GLU
8
-92.47
-71.30
13
A
ILE
13
-154.21
28.99
13
A
SER
18
-177.96
147.73
14
A
GLU
8
-91.14
-70.83
14
A
TYR
20
-139.99
-120.91
15
A
GLU
8
-90.62
-72.24
15
A
ILE
13
-152.31
40.07
15
A
SER
18
-175.88
146.77
16
A
GLU
8
-89.67
-73.25
16
A
ILE
13
-87.67
33.27
16
A
SER
18
-179.71
147.96
17
A
HIS
5
-137.21
-43.19
17
A
GLU
8
-91.43
-75.87
17
A
ILE
13
-82.64
32.32
17
A
SER
18
179.63
149.90
17
A
TYR
20
-160.10
-161.52
18
A
GLU
8
-92.57
-74.91
18
A
ILE
13
-157.46
28.27
18
A
SER
18
179.23
148.31
19
A
HIS
5
-122.15
-51.70
19
A
GLU
8
-92.64
-69.97
19
A
ILE
13
-84.32
31.19
19
A
SER
18
179.76
149.44
19
A
TYR
20
-158.24
-149.08
20
A
HIS
5
-133.29
-47.91
20
A
GLU
8
-89.73
-73.32
20
A
TYR
20
-158.75
-159.84
microcin J25
The structure of microcin J25 is a threaded sidechain-to-backbone ring structure and not a head-to-tail cyclized backbone
1
N
N
covale
1.331
A
GLY
1
A
N
GLY
1
1_555
A
GLU
8
A
CD
GLU
8
1_555
ANTIBIOTIC
microcin J25, mccj25, sidechain-to-backbone link, antimicrobial peptide, ANTIMICROBIAL PROTEIN, ANTIBIOTIC
MCJA_ECOLI
UNP
1
38
Q9X2V7
GGAGHVPEYFVGIGTPISFYG
38
58
1Q71
1
21
Q9X2V7
A
1
1
21