0.015833
0.000000
0.000000
0.000000
0.015679
0.000000
0.000000
0.000000
0.014420
0.00000
0.00000
0.00000
Whitlow, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
63.16
63.78
69.35
C28 H27 F2 N6 O5 1
565.548
1-[2-[5-[AMINO(IMINO)METHYL]-2-HYDROXYPHENOXY]-6-[3-(4,5-DIHYDRO-1-METHYL-1H-IMIDAZOL-2-YL)PHENOXY] PYRIDIN-4-YL]PIPERIDINE-3-CARBOXYLIC ACID
ZK-806974
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
55
1395
1404
10.1107/S0907444999007350
10417407
Crystallographic analysis of potent and selective factor Xa inhibitors complexed to bovine trypsin.
1999
NE
FEBS Lett.
FEBLAL
0165
0014-5793
90
265
269
10.1016/0014-5793(78)80382-2
Crystal Structure Analysis and Refinement of Two Variants of Trigonal Trypsinogen
1978
US
J.Med.Chem.
JMCMAR
0151
0022-2623
42
1749
1756
10.1021/jm980667k
Design, Synthesis, and Activity of 2,6-Diphenoxypyridine-Derived Factor Xa Inhibitors
1999
US
J.Med.Chem.
JMCMAR
0151
0022-2623
41
3557
3562
10.1021/jm980280h
Discovery of N-[2-[5-[Amino(Imino)Methyl]-2-Hydroxyphenoxy]-3,5- Difluoro-6-[3-(4,5-Dihydro-1-Methyl-1H-Imidazol-2-Yl)Phenoxy] Pyridin-4-Yl-N-Methylglycine (Zk-807834): A Potent, Selective and Orally Active Inhibitor of the Blood Coagulation Enzyme Factor Xa
1998
NE
FEBS Lett.
FEBLAL
0165
0014-5793
375
103
107
10.1016/0014-5793(95)01190-P
Crystal Structures of Factor Xa Specific Inhibitors in Complex with Trypsin: Structural Grounds for Inhibition of Factor Xa and Selectivity Against Thrombin
1995
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
271
29988
29992
10.1074/jbc.271.47.29988
X-Ray Structure of Active Site-Inhibited Clotting Factor Xa. Implications for Drug Design and Substrate Recognition
1996
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
232
947
966
10.1006/jmbi.1993.1441
Structure of Human Des(1-45) Factor Xa at 2.2 A Resolution
1993
IX
Eur.J.Biochem.
EJBCAI
0262
0014-2956
193
175
182
Geometry of Binding of the Benzamidine-and Arginine-Based Inhibitors N Alpha-(2-Naphthyl-Sulphonyl-Glycyl)-Dl-P-Amidinophenylalanyl-Piperidine (Napap) and (2R,4R)-4-Methyl-1-[N Alpha-(3-Methyl-1,2,3,4-Tetrahydro-8-Quinolinesulphonyl)- L-Arginyl]-2-Piperidine to Carboxylic Acid (Mqpa) Human Alpha-Thrombin. X-Ray Crystallographic Determination of the Napap-Trypsin Complex and Modeling of Napap-Thrombin and Mqpa-Thrombin
1990
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
210
813
828
Crystal Structure of Bovine Beta-Trypsin at 1.5 A Resolution in a Crystal Form with Low Molecular Packing Density. Active Site Geometry, Ion Pairs and Solvent Structure
1989
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
297
1
MIRRORS
IMAGE PLATE
1995-04-12
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
SIEMENS
23324.287
PROTEIN (TRYPSIN)
3.4.21.4
BOVINE TRYPSIN
1
nat
polymer
40.078
CALCIUM ION
1
syn
non-polymer
565.548
1-[2-[5-[AMINO(IMINO)METHYL]-2-HYDROXYPHENOXY]-6-[3-(4,5-DIHYDRO-1-METHYL-1H-IMIDAZOL-2-YL)PHENOXY] PYRIDIN-4-YL]PIPERIDINE-3-CARBOXYLIC ACID
1
syn
non-polymer
18.015
water
218
nat
water
EC 3.4.21.4
no
no
IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNT
LNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNM
FCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN
IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNT
LNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNM
FCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
cattle
BOEHRINGER MANNHEIM CATALOG NUMBER 109,827
Bos
sample
9913
PANCREAS
Bos taurus
1
3.00
58.4
STARTING FROM THE TRYPSIN 2-AMINOBENZIMIDAZOLE STRUCTURE
VAPOR DIFFUSION, HANGING DROP
7.4
MICROCRYSTALS WERE INITIALLY GROWN USING THE HANGING DROP METHOD IN LINBRO
CULTURE PLATES. REFERENCES 7 (BODE, TURK & STURZEBACHER) AND 8 (BARTUNIK,
SUMMERS & BARTSH) HAVE DESCRIBED THE CRYSTALLIZATION OF THE ORTHORHOMBIC FORM
OF BOVINE TRYPSIN. CRYSTALS WERE SEEDING INTO DROPS CONTAINING 40 MG/ML
BOVINE
TRYPSIN, 0.0125 M BENZAMIDINE, 0.7 TO 0.9 M AS, 0.05 M MES PH 6.0, 0.0025 M
CACL2 AFTER EQUILIBRATION AGAINST THE CRYSTALLIZATION RESERVOIR FOR 1 DAY. THE
CRYSTALLIZATION RESERVOIRS CONTAINED 1.4 TO 1.8 M AS, 0.1 M MES PH 6.0, 0.005
M CACL2., pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 297K
297
citation_author
repository
Initial release
Version format compliance
Version format compliance
Database references
1
0
2000-04-29
1
1
2008-01-08
1
2
2011-07-13
1
3
2018-01-24
_citation_author.name
Factor Xa Inhibitor ZK-806688 in Bovine Trypsin
Factor Xa inhibitor DX-9065a in Bovine Trypsin
Factor Xa Inhibitor ZK-806711 in Bovine Trypsin
Factor Xa Inhibitor ZK-805633 in Bovine Trypsin - Starting Model
Factor Xa Inhibitor DX-9065a in Human factor Xa
RCSB
Y
RCSB
1999-04-28
REL
CA
CALCIUM ION
974
1-[2-[5-[AMINO(IMINO)METHYL]-2-HYDROXYPHENOXY]-6-[3-(4,5-DIHYDRO-1-METHYL-1H-IMIDAZOL-2-YL)PHENOXY] PYRIDIN-4-YL]PIPERIDINE-3-CARBOXYLIC ACID
HOH
water
CAL
301
2
CA
CA
301
A
974
300
3
974
974
300
A
WAT
302
4
HOH
HOH
302
A
WAT
303
4
HOH
HOH
303
A
WAT
304
4
HOH
HOH
304
A
WAT
305
4
HOH
HOH
305
A
WAT
306
4
HOH
HOH
306
A
WAT
307
4
HOH
HOH
307
A
WAT
308
4
HOH
HOH
308
A
WAT
309
4
HOH
HOH
309
A
WAT
310
4
HOH
HOH
310
A
WAT
311
4
HOH
HOH
311
A
WAT
312
4
HOH
HOH
312
A
WAT
313
4
HOH
HOH
313
A
WAT
314
4
HOH
HOH
314
A
WAT
315
4
HOH
HOH
315
A
WAT
316
4
HOH
HOH
316
A
WAT
317
4
HOH
HOH
317
A
WAT
318
4
HOH
HOH
318
A
WAT
319
4
HOH
HOH
319
A
WAT
320
4
HOH
HOH
320
A
WAT
321
4
HOH
HOH
321
A
WAT
322
4
HOH
HOH
322
A
WAT
323
4
HOH
HOH
323
A
WAT
324
4
HOH
HOH
324
A
WAT
325
4
HOH
HOH
325
A
WAT
326
4
HOH
HOH
326
A
WAT
327
4
HOH
HOH
327
A
WAT
328
4
HOH
HOH
328
A
WAT
329
4
HOH
HOH
329
A
WAT
330
4
HOH
HOH
330
A
WAT
331
4
HOH
HOH
331
A
WAT
332
4
HOH
HOH
332
A
WAT
333
4
HOH
HOH
333
A
WAT
334
4
HOH
HOH
334
A
WAT
335
4
HOH
HOH
335
A
WAT
336
4
HOH
HOH
336
A
WAT
337
4
HOH
HOH
337
A
WAT
338
4
HOH
HOH
338
A
WAT
340
4
HOH
HOH
340
A
WAT
341
4
HOH
HOH
341
A
WAT
342
4
HOH
HOH
342
A
WAT
343
4
HOH
HOH
343
A
WAT
344
4
HOH
HOH
344
A
WAT
345
4
HOH
HOH
345
A
WAT
346
4
HOH
HOH
346
A
WAT
348
4
HOH
HOH
348
A
WAT
349
4
HOH
HOH
349
A
WAT
350
4
HOH
HOH
350
A
WAT
351
4
HOH
HOH
351
A
WAT
352
4
HOH
HOH
352
A
WAT
353
4
HOH
HOH
353
A
WAT
354
4
HOH
HOH
354
A
WAT
355
4
HOH
HOH
355
A
WAT
356
4
HOH
HOH
356
A
WAT
357
4
HOH
HOH
357
A
WAT
358
4
HOH
HOH
358
A
WAT
359
4
HOH
HOH
359
A
WAT
360
4
HOH
HOH
360
A
WAT
361
4
HOH
HOH
361
A
WAT
362
4
HOH
HOH
362
A
WAT
363
4
HOH
HOH
363
A
WAT
364
4
HOH
HOH
364
A
WAT
365
4
HOH
HOH
365
A
WAT
366
4
HOH
HOH
366
A
WAT
367
4
HOH
HOH
367
A
WAT
368
4
HOH
HOH
368
A
WAT
369
4
HOH
HOH
369
A
WAT
370
4
HOH
HOH
370
A
WAT
371
4
HOH
HOH
371
A
WAT
372
4
HOH
HOH
372
A
WAT
373
4
HOH
HOH
373
A
WAT
374
4
HOH
HOH
374
A
WAT
375
4
HOH
HOH
375
A
WAT
377
4
HOH
HOH
377
A
WAT
378
4
HOH
HOH
378
A
WAT
379
4
HOH
HOH
379
A
WAT
380
4
HOH
HOH
380
A
WAT
381
4
HOH
HOH
381
A
WAT
382
4
HOH
HOH
382
A
WAT
383
4
HOH
HOH
383
A
WAT
384
4
HOH
HOH
384
A
WAT
385
4
HOH
HOH
385
A
WAT
386
4
HOH
HOH
386
A
WAT
387
4
HOH
HOH
387
A
WAT
388
4
HOH
HOH
388
A
WAT
389
4
HOH
HOH
389
A
WAT
391
4
HOH
HOH
391
A
WAT
392
4
HOH
HOH
392
A
WAT
393
4
HOH
HOH
393
A
WAT
394
4
HOH
HOH
394
A
WAT
395
4
HOH
HOH
395
A
WAT
396
4
HOH
HOH
396
A
WAT
397
4
HOH
HOH
397
A
WAT
398
4
HOH
HOH
398
A
WAT
399
4
HOH
HOH
399
A
WAT
400
4
HOH
HOH
400
A
WAT
401
4
HOH
HOH
401
A
WAT
402
4
HOH
HOH
402
A
WAT
404
4
HOH
HOH
404
A
WAT
405
4
HOH
HOH
405
A
WAT
406
4
HOH
HOH
406
A
WAT
407
4
HOH
HOH
407
A
WAT
408
4
HOH
HOH
408
A
WAT
409
4
HOH
HOH
409
A
WAT
410
4
HOH
HOH
410
A
WAT
411
4
HOH
HOH
411
A
WAT
412
4
HOH
HOH
412
A
WAT
413
4
HOH
HOH
413
A
WAT
414
4
HOH
HOH
414
A
WAT
415
4
HOH
HOH
415
A
WAT
417
4
HOH
HOH
417
A
WAT
418
4
HOH
HOH
418
A
WAT
421
4
HOH
HOH
421
A
WAT
422
4
HOH
HOH
422
A
WAT
423
4
HOH
HOH
423
A
WAT
424
4
HOH
HOH
424
A
WAT
425
4
HOH
HOH
425
A
WAT
427
4
HOH
HOH
427
A
WAT
428
4
HOH
HOH
428
A
WAT
429
4
HOH
HOH
429
A
WAT
430
4
HOH
HOH
430
A
WAT
431
4
HOH
HOH
431
A
WAT
432
4
HOH
HOH
432
A
WAT
433
4
HOH
HOH
433
A
WAT
434
4
HOH
HOH
434
A
WAT
435
4
HOH
HOH
435
A
WAT
437
4
HOH
HOH
437
A
WAT
438
4
HOH
HOH
438
A
WAT
439
4
HOH
HOH
439
A
WAT
440
4
HOH
HOH
440
A
WAT
442
4
HOH
HOH
442
A
WAT
443
4
HOH
HOH
443
A
WAT
446
4
HOH
HOH
446
A
WAT
448
4
HOH
HOH
448
A
WAT
451
4
HOH
HOH
451
A
WAT
455
4
HOH
HOH
455
A
WAT
463
4
HOH
HOH
463
A
WAT
464
4
HOH
HOH
464
A
WAT
465
4
HOH
HOH
465
A
WAT
466
4
HOH
HOH
466
A
WAT
467
4
HOH
HOH
467
A
WAT
468
4
HOH
HOH
468
A
WAT
469
4
HOH
HOH
469
A
WAT
470
4
HOH
HOH
470
A
WAT
471
4
HOH
HOH
471
A
WAT
472
4
HOH
HOH
472
A
WAT
473
4
HOH
HOH
473
A
WAT
474
4
HOH
HOH
474
A
WAT
475
4
HOH
HOH
475
A
WAT
476
4
HOH
HOH
476
A
WAT
477
4
HOH
HOH
477
A
WAT
478
4
HOH
HOH
478
A
WAT
479
4
HOH
HOH
479
A
WAT
480
4
HOH
HOH
480
A
WAT
481
4
HOH
HOH
481
A
WAT
482
4
HOH
HOH
482
A
WAT
483
4
HOH
HOH
483
A
WAT
484
4
HOH
HOH
484
A
WAT
485
4
HOH
HOH
485
A
WAT
486
4
HOH
HOH
486
A
WAT
487
4
HOH
HOH
487
A
WAT
488
4
HOH
HOH
488
A
WAT
489
4
HOH
HOH
489
A
WAT
490
4
HOH
HOH
490
A
WAT
491
4
HOH
HOH
491
A
WAT
492
4
HOH
HOH
492
A
WAT
493
4
HOH
HOH
493
A
WAT
494
4
HOH
HOH
494
A
WAT
495
4
HOH
HOH
495
A
WAT
496
4
HOH
HOH
496
A
WAT
497
4
HOH
HOH
497
A
WAT
498
4
HOH
HOH
498
A
WAT
499
4
HOH
HOH
499
A
WAT
500
4
HOH
HOH
500
A
WAT
501
4
HOH
HOH
501
A
WAT
502
4
HOH
HOH
502
A
WAT
503
4
HOH
HOH
503
A
WAT
504
4
HOH
HOH
504
A
WAT
505
4
HOH
HOH
505
A
WAT
506
4
HOH
HOH
506
A
WAT
507
4
HOH
HOH
507
A
WAT
508
4
HOH
HOH
508
A
WAT
509
4
HOH
HOH
509
A
WAT
510
4
HOH
HOH
510
A
WAT
511
4
HOH
HOH
511
A
WAT
512
4
HOH
HOH
512
A
WAT
513
4
HOH
HOH
513
A
WAT
514
4
HOH
HOH
514
A
WAT
515
4
HOH
HOH
515
A
WAT
516
4
HOH
HOH
516
A
WAT
517
4
HOH
HOH
517
A
WAT
518
4
HOH
HOH
518
A
WAT
519
4
HOH
HOH
519
A
WAT
520
4
HOH
HOH
520
A
WAT
521
4
HOH
HOH
521
A
WAT
522
4
HOH
HOH
522
A
WAT
524
4
HOH
HOH
524
A
WAT
525
4
HOH
HOH
525
A
WAT
526
4
HOH
HOH
526
A
WAT
527
4
HOH
HOH
527
A
WAT
528
4
HOH
HOH
528
A
WAT
530
4
HOH
HOH
530
A
WAT
531
4
HOH
HOH
531
A
WAT
532
4
HOH
HOH
532
A
WAT
533
4
HOH
HOH
533
A
WAT
534
4
HOH
HOH
534
A
WAT
535
4
HOH
HOH
535
A
WAT
536
4
HOH
HOH
536
A
WAT
537
4
HOH
HOH
537
A
WAT
538
4
HOH
HOH
538
A
WAT
539
4
HOH
HOH
539
A
WAT
540
4
HOH
HOH
540
A
WAT
541
4
HOH
HOH
541
A
WAT
542
4
HOH
HOH
542
A
WAT
543
4
HOH
HOH
543
A
WAT
545
4
HOH
HOH
545
A
WAT
546
4
HOH
HOH
546
A
WAT
547
4
HOH
HOH
547
A
WAT
548
4
HOH
HOH
548
A
ILE
7
n
1
ILE
7
A
VAL
8
n
2
VAL
8
A
GLY
9
n
3
GLY
9
A
GLY
10
n
4
GLY
10
A
TYR
11
n
5
TYR
11
A
THR
12
n
6
THR
12
A
CYS
13
n
7
CYS
13
A
GLY
14
n
8
GLY
14
A
ALA
15
n
9
ALA
15
A
ASN
16
n
10
ASN
16
A
THR
17
n
11
THR
17
A
VAL
18
n
12
VAL
18
A
PRO
19
n
13
PRO
19
A
TYR
20
n
14
TYR
20
A
GLN
21
n
15
GLN
21
A
VAL
22
n
16
VAL
22
A
SER
23
n
17
SER
23
A
LEU
24
n
18
LEU
24
A
ASN
25
n
19
ASN
25
A
SER
26
n
20
SER
26
A
GLY
27
n
21
GLY
27
A
TYR
28
n
22
TYR
28
A
HIS
29
n
23
HIS
29
A
PHE
30
n
24
PHE
30
A
CYS
31
n
25
CYS
31
A
GLY
32
n
26
GLY
32
A
GLY
33
n
27
GLY
33
A
SER
34
n
28
SER
34
A
LEU
35
n
29
LEU
35
A
ILE
36
n
30
ILE
36
A
ASN
37
n
31
ASN
37
A
SER
38
n
32
SER
38
A
GLN
39
n
33
GLN
39
A
TRP
40
n
34
TRP
40
A
VAL
41
n
35
VAL
41
A
VAL
42
n
36
VAL
42
A
SER
43
n
37
SER
43
A
ALA
44
n
38
ALA
44
A
ALA
45
n
39
ALA
45
A
HIS
46
n
40
HIS
46
A
CYS
47
n
41
CYS
47
A
TYR
48
n
42
TYR
48
A
LYS
49
n
43
LYS
49
A
SER
50
n
44
SER
50
A
GLY
51
n
45
GLY
51
A
ILE
52
n
46
ILE
52
A
GLN
53
n
47
GLN
53
A
VAL
54
n
48
VAL
54
A
ARG
55
n
49
ARG
55
A
LEU
56
n
50
LEU
56
A
GLY
57
n
51
GLY
57
A
GLU
58
n
52
GLU
58
A
ASP
59
n
53
ASP
59
A
ASN
60
n
54
ASN
60
A
ILE
61
n
55
ILE
61
A
ASN
62
n
56
ASN
62
A
VAL
63
n
57
VAL
63
A
VAL
64
n
58
VAL
64
A
GLU
65
n
59
GLU
65
A
GLY
66
n
60
GLY
66
A
ASN
67
n
61
ASN
67
A
GLU
68
n
62
GLU
68
A
GLN
69
n
63
GLN
69
A
PHE
70
n
64
PHE
70
A
ILE
71
n
65
ILE
71
A
SER
72
n
66
SER
72
A
ALA
73
n
67
ALA
73
A
SER
74
n
68
SER
74
A
LYS
75
n
69
LYS
75
A
SER
76
n
70
SER
76
A
ILE
77
n
71
ILE
77
A
VAL
78
n
72
VAL
78
A
HIS
79
n
73
HIS
79
A
PRO
80
n
74
PRO
80
A
SER
81
n
75
SER
81
A
TYR
82
n
76
TYR
82
A
ASN
83
n
77
ASN
83
A
SER
84
n
78
SER
84
A
ASN
85
n
79
ASN
85
A
THR
86
n
80
THR
86
A
LEU
87
n
81
LEU
87
A
ASN
88
n
82
ASN
88
A
ASN
89
n
83
ASN
89
A
ASP
90
n
84
ASP
90
A
ILE
91
n
85
ILE
91
A
MET
92
n
86
MET
92
A
LEU
93
n
87
LEU
93
A
ILE
94
n
88
ILE
94
A
LYS
95
n
89
LYS
95
A
LEU
96
n
90
LEU
96
A
LYS
97
n
91
LYS
97
A
SER
98
n
92
SER
98
A
ALA
99
n
93
ALA
99
A
ALA
100
n
94
ALA
100
A
SER
101
n
95
SER
101
A
LEU
102
n
96
LEU
102
A
ASN
103
n
97
ASN
103
A
SER
104
n
98
SER
104
A
ARG
105
n
99
ARG
105
A
VAL
106
n
100
VAL
106
A
ALA
107
n
101
ALA
107
A
SER
108
n
102
SER
108
A
ILE
109
n
103
ILE
109
A
SER
110
n
104
SER
110
A
LEU
111
n
105
LEU
111
A
PRO
112
n
106
PRO
112
A
THR
113
n
107
THR
113
A
SER
114
n
108
SER
114
A
CYS
115
n
109
CYS
115
A
ALA
116
n
110
ALA
116
A
SER
117
n
111
SER
117
A
ALA
118
n
112
ALA
118
A
GLY
119
n
113
GLY
119
A
THR
120
n
114
THR
120
A
GLN
121
n
115
GLN
121
A
CYS
122
n
116
CYS
122
A
LEU
123
n
117
LEU
123
A
ILE
124
n
118
ILE
124
A
SER
125
n
119
SER
125
A
GLY
126
n
120
GLY
126
A
TRP
127
n
121
TRP
127
A
GLY
128
n
122
GLY
128
A
ASN
129
n
123
ASN
129
A
THR
130
n
124
THR
130
A
LYS
131
n
125
LYS
131
A
SER
132
n
126
SER
132
A
SER
133
n
127
SER
133
A
GLY
134
n
128
GLY
134
A
THR
135
n
129
THR
135
A
SER
136
n
130
SER
136
A
TYR
137
n
131
TYR
137
A
PRO
138
n
132
PRO
138
A
ASP
139
n
133
ASP
139
A
VAL
140
n
134
VAL
140
A
LEU
141
n
135
LEU
141
A
LYS
142
n
136
LYS
142
A
CYS
143
n
137
CYS
143
A
LEU
144
n
138
LEU
144
A
LYS
145
n
139
LYS
145
A
ALA
146
n
140
ALA
146
A
PRO
147
n
141
PRO
147
A
ILE
148
n
142
ILE
148
A
LEU
149
n
143
LEU
149
A
SER
150
n
144
SER
150
A
ASN
151
n
145
ASP
151
A
SER
152
n
146
SER
152
A
SER
153
n
147
SER
153
A
CYS
154
n
148
CYS
154
A
LYS
155
n
149
LYS
155
A
SER
156
n
150
SER
156
A
ALA
157
n
151
ALA
157
A
TYR
158
n
152
TYR
158
A
PRO
159
n
153
PRO
159
A
GLY
160
n
154
GLY
160
A
GLN
161
n
155
GLN
161
A
ILE
162
n
156
ILE
162
A
THR
163
n
157
THR
163
A
SER
164
n
158
SER
164
A
ASN
165
n
159
ASN
165
A
MET
166
n
160
MET
166
A
PHE
167
n
161
PHE
167
A
CYS
168
n
162
CYS
168
A
ALA
169
n
163
ALA
169
A
GLY
170
n
164
GLY
170
A
TYR
171
n
165
TYR
171
A
LEU
172
n
166
LEU
172
A
GLN
173
n
167
GLU
173
A
GLY
174
n
168
GLY
174
A
GLY
175
n
169
GLY
175
A
LYS
176
n
170
LYS
176
A
ASP
177
n
171
ASP
177
A
SER
178
n
172
SER
178
A
CYS
179
n
173
CYS
179
A
GLN
180
n
174
GLN
180
A
GLY
181
n
175
GLY
181
A
ASP
182
n
176
ASP
182
A
SER
183
n
177
SER
183
A
GLY
184
n
178
GLY
184
A
GLY
185
n
179
GLY
185
A
PRO
186
n
180
PRO
186
A
VAL
187
n
181
VAL
187
A
VAL
188
n
182
VAL
188
A
CYS
189
n
183
CYS
189
A
SER
190
n
184
SER
190
A
GLY
191
n
185
GLY
191
A
LYS
192
n
186
LYS
192
A
LEU
193
n
187
LEU
193
A
GLN
194
n
188
GLN
194
A
GLY
195
n
189
GLY
195
A
ILE
196
n
190
ILE
196
A
VAL
197
n
191
VAL
197
A
SER
198
n
192
SER
198
A
TRP
199
n
193
TRP
199
A
GLY
200
n
194
GLY
200
A
SER
201
n
195
SER
201
A
GLY
202
n
196
GLY
202
A
CYS
203
n
197
CYS
203
A
ALA
204
n
198
ALA
204
A
GLN
205
n
199
GLN
205
A
LYS
206
n
200
LYS
206
A
ASN
207
n
201
ASN
207
A
LYS
208
n
202
LYS
208
A
PRO
209
n
203
PRO
209
A
GLY
210
n
204
GLY
210
A
VAL
211
n
205
VAL
211
A
TYR
212
n
206
TYR
212
A
THR
213
n
207
THR
213
A
LYS
214
n
208
LYS
214
A
VAL
215
n
209
VAL
215
A
CYS
216
n
210
CYS
216
A
ASN
217
n
211
ASN
217
A
TYR
218
n
212
TYR
218
A
VAL
219
n
213
VAL
219
A
SER
220
n
214
SER
220
A
TRP
221
n
215
TRP
221
A
ILE
222
n
216
ILE
222
A
LYS
223
n
217
LYS
223
A
GLN
224
n
218
GLN
224
A
THR
225
n
219
THR
225
A
ILE
226
n
220
ILE
226
A
ALA
227
n
221
ALA
227
A
SER
228
n
222
SER
228
A
ASN
229
n
223
ASN
229
A
0.183
0.237
980
4
author_defined_assembly
1
monomeric
A
VAL
63
A
O
VAL
57
1_555
A
CA
301
B
CA
CA
1_555
A
GLU
68
A
OE2
GLU
62
1_555
86.5
A
VAL
63
A
O
VAL
57
1_555
A
CA
301
B
CA
CA
1_555
A
GLU
58
A
OE1
GLU
52
1_555
164.7
A
GLU
68
A
OE2
GLU
62
1_555
A
CA
301
B
CA
CA
1_555
A
GLU
58
A
OE1
GLU
52
1_555
104.1
A
VAL
63
A
O
VAL
57
1_555
A
CA
301
B
CA
CA
1_555
A
ASN
60
A
O
ASN
54
1_555
85.8
A
GLU
68
A
OE2
GLU
62
1_555
A
CA
301
B
CA
CA
1_555
A
ASN
60
A
O
ASN
54
1_555
156.8
A
GLU
58
A
OE1
GLU
52
1_555
A
CA
301
B
CA
CA
1_555
A
ASN
60
A
O
ASN
54
1_555
88.2
A
VAL
63
A
O
VAL
57
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
323
D
O
HOH
1_555
110.3
A
GLU
68
A
OE2
GLU
62
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
323
D
O
HOH
1_555
77.8
A
GLU
58
A
OE1
GLU
52
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
323
D
O
HOH
1_555
83.1
A
ASN
60
A
O
ASN
54
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
323
D
O
HOH
1_555
84.4
A
VAL
63
A
O
VAL
57
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
340
D
O
HOH
1_555
85.6
A
GLU
68
A
OE2
GLU
62
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
340
D
O
HOH
1_555
93.6
A
GLU
58
A
OE1
GLU
52
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
340
D
O
HOH
1_555
82.8
A
ASN
60
A
O
ASN
54
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
340
D
O
HOH
1_555
107.6
A
HOH
323
D
O
HOH
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
340
D
O
HOH
1_555
161.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TYR
11
A
O
TYR
5
A
N
CYS
143
A
N
CYS
137
A
N
ALA
146
A
N
ALA
140
A
O
CYS
122
A
O
CYS
116
A
N
SER
125
A
N
SER
119
A
O
PRO
186
A
O
PRO
180
A
N
CYS
189
A
N
CYS
183
A
O
LYS
192
A
O
LYS
186
A
O
TRP
199
A
O
TRP
193
A
N
VAL
211
A
N
VAL
205
A
N
TYR
212
A
N
TYR
206
A
O
PHE
167
A
O
PHE
161
A
O
LEU
24
A
O
LEU
18
A
N
PHE
30
A
N
PHE
24
A
O
GLY
33
A
O
GLY
27
A
N
VAL
22
A
N
VAL
16
A
N
ASN
25
A
N
ASN
19
A
O
GLN
53
A
O
GLN
47
A
N
LEU
56
A
N
LEU
50
A
O
GLN
69
A
O
GLN
63
A
N
ILE
77
A
N
ILE
71
A
O
LEU
93
A
O
LEU
87
A
N
ILE
94
A
N
ILE
88
A
O
VAL
41
A
O
VAL
35
1
-7.27
0.90
118.30
111.03
A
A
A
CB
CG
OD2
ASP
ASP
ASP
151
151
151
N
1
A
A
CD
OE2
GLU
GLU
173
173
0.090
0.011
1.252
1.342
N
1
A
ASP
59
-127.48
-80.93
1
A
ASN
67
85.27
-12.97
0.237
0.183
1.80
10.0
890
22476
21586
4.0
99.0
1
THROUGHOUT
2.0
DIRECT REPLACEMENT
W.A.Hendrickson (1985) Methods in Enzymology, Volume 115, pages 370-381.
1.80
10.0
218
1895
42
0
1635
0.016
0.020
0.030
0.030
0.044
0.050
1.628
2.0
2.429
3.0
3.135
3.0
4.552
4.0
0.015
0.020
0.165
0.150
0.167
0.50
0.214
0.5
0.5
0.228
0.5
3.0
3.0
16.2
15.0
21.3
20.0
15.0
1.80
10.0
1QB1
26263
0
2
0.078
1
16.2
3.4
99.0
1.8
1.9
3.11
0.222
3.11
99.9
data reduction
DENZO
data scaling
SCALEPACK
refinement
PROFFT
TRYPSIN
Bovine Trypsin with 1-[2-[5-[amino(imino)methyl]-2-hydroxyphenoxy]-6-[3-(4,5-dihydro-1-methyl-1H-imidazol-2-yl)phenoxy]pyridin-4-yl]piperidine-3-carboxylic Acid (ZK-806974)
1
N
N
2
N
N
3
N
N
4
N
N
The biological assembly is a monomer.
A
ALA
44
A
ALA
38
HELX_P
A
TYR
48
A
TYR
42
5
1
5
A
SER
150
A
SER
144
HELX_P
A
TYR
158
A
TYR
152
1
2
9
A
TYR
218
A
TYR
212
HELX_P
A
SER
228
A
SER
222
1
3
11
disulf
2.050
A
CYS
13
A
SG
CYS
7
1_555
A
CYS
143
A
SG
CYS
137
1_555
disulf
2.027
A
CYS
31
A
SG
CYS
25
1_555
A
CYS
47
A
SG
CYS
41
1_555
disulf
2.086
A
CYS
115
A
SG
CYS
109
1_555
A
CYS
216
A
SG
CYS
210
1_555
disulf
1.966
A
CYS
122
A
SG
CYS
116
1_555
A
CYS
189
A
SG
CYS
183
1_555
disulf
2.029
A
CYS
154
A
SG
CYS
148
1_555
A
CYS
168
A
SG
CYS
162
1_555
disulf
2.099
A
CYS
179
A
SG
CYS
173
1_555
A
CYS
203
A
SG
CYS
197
1_555
metalc
2.237
A
CA
301
B
CA
CA
1_555
A
VAL
63
A
O
VAL
57
1_555
metalc
2.407
A
CA
301
B
CA
CA
1_555
A
GLU
68
A
OE2
GLU
62
1_555
metalc
2.308
A
CA
301
B
CA
CA
1_555
A
GLU
58
A
OE1
GLU
52
1_555
metalc
2.238
A
CA
301
B
CA
CA
1_555
A
ASN
60
A
O
ASN
54
1_555
metalc
2.451
A
CA
301
B
CA
CA
1_555
A
HOH
323
D
O
HOH
1_555
metalc
2.452
A
CA
301
B
CA
CA
1_555
A
HOH
340
D
O
HOH
1_555
HYDROLASE
HYDROLASE, SERINE PROTEINASE, PROTEIN-INHIBITOR COMPLEX, S1 POCKET, FACTOR XA
TRY1_BOVIN
UNP
1
P00760
1
223
1QB1
7
229
P00760
A
1
1
223
7
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
11
A
TYR
5
A
THR
12
A
THR
6
A
LYS
142
A
LYS
136
A
PRO
147
A
PRO
141
A
GLN
121
A
GLN
115
A
GLY
126
A
GLY
120
A
PRO
186
A
PRO
180
A
CYS
189
A
CYS
183
A
LYS
192
A
LYS
186
A
TRP
199
A
TRP
193
A
GLY
210
A
GLY
204
A
LYS
214
A
LYS
208
A
MET
166
A
MET
160
A
ALA
169
A
ALA
163
A
GLN
21
A
GLN
15
A
ASN
25
A
ASN
19
A
HIS
29
A
HIS
23
A
LEU
35
A
LEU
29
A
GLN
21
A
GLN
15
A
ASN
25
A
ASN
19
A
GLN
53
A
GLN
47
A
LEU
56
A
LEU
50
A
GLN
69
A
GLN
63
A
VAL
78
A
VAL
72
A
MET
92
A
MET
86
A
LEU
96
A
LEU
90
A
TRP
40
A
TRP
34
A
SER
43
A
SER
37
BINDING SITE FOR RESIDUE CA A 301
Software
6
BINDING SITE FOR RESIDUE 974 A 300
Software
12
A
GLU
58
A
GLU
52
6
1_555
A
ASN
60
A
ASN
54
6
1_555
A
VAL
63
A
VAL
57
6
1_555
A
GLU
68
A
GLU
62
6
1_555
A
HOH
323
D
HOH
6
1_555
A
HOH
340
D
HOH
6
1_555
A
SER
84
A
SER
78
12
1_555
A
ASN
85
A
ASN
79
12
1_555
A
THR
86
A
THR
80
12
1_555
A
GLN
161
A
GLN
155
12
1_555
A
ASP
177
A
ASP
171
12
1_555
A
SER
178
A
SER
172
12
1_555
A
GLN
180
A
GLN
174
12
1_555
A
SER
183
A
SER
177
12
1_555
A
TRP
199
A
TRP
193
12
1_555
A
GLY
200
A
GLY
194
12
1_555
A
GLY
202
A
GLY
196
12
1_555
A
GLY
210
A
GLY
204
12
1_555
19
orthorhombic
P 21 21 21