1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Mcdowell, J.A. He, L. Chen, X. Turner, D.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking US Biochemistry BICHAW 0033 0006-2960 36 8030 8038 10.1021/bi970122c 9201950 Investigation of the structural basis for thermodynamic stabilities of tandem GU wobble pairs: NMR structures of (rGGAGUUCC)2 and (rGGAUGUCC)2. 1997 10.2210/pdb1qes/pdb pdb_00001qes 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 ANTI-PARALLEL RNA DUPLEX, TANDEM GUANOSINE/ URIDINE MISMATCHES 2542.561 RNA (5'-R(*GP*GP*AP*GP*UP*UP*CP*C)-3') 2 syn polymer (RGGAGUUCC)2 no no GGAGUUCC GGAGUUCC A,B polyribonucleotide n n n n n n n n -13.267 1 19 A 1 B 16 -0.869 A_G1:C16_B 1 -7.275 0.382 -0.536 -0.079 -2.964 1 19 A 2 B 15 -0.554 A_G2:C15_B 2 5.050 0.009 0.037 0.000 4.697 1 20 A 3 B 14 -3.700 A_A3:U14_B 3 3.923 0.066 -0.019 -0.070 -0.035 1 28 A 4 B 13 7.473 A_G4:U13_B 4 -6.566 -2.349 0.149 -0.320 -3.536 1 28 A 5 B 12 6.523 A_U5:G12_B 5 -6.122 2.545 0.133 -0.358 -5.914 1 20 A 6 B 11 -1.119 A_U6:A11_B 6 1.578 0.007 0.011 -0.104 -0.405 1 19 A 7 B 10 -1.409 A_C7:G10_B 7 6.194 0.147 0.066 -0.048 13.068 1 19 A 8 B 9 -2.789 A_C8:G9_B 8 -1.286 -0.298 -0.598 -0.089 2.298 29.709 A A 1 2 13.008 B B 16 15 2.733 6.611 -0.269 -1.756 AA_G1G2:C15C16_BB 1 -2.131 4.193 28.904 -4.507 0.176 2.482 30.378 A A 2 3 10.343 B B 15 14 2.848 5.392 -0.010 -1.853 AA_G2A3:U14C15_BB 2 0.802 -1.538 29.896 -4.424 0.150 2.126 26.733 A A 3 4 17.419 B B 14 13 2.884 7.937 1.401 -2.157 AA_A3G4:U13U14_BB 3 -0.040 0.087 25.549 -6.282 -3.039 2.945 50.692 A A 4 5 8.684 B B 13 12 3.115 7.412 -0.057 -1.030 AA_G4U5:G12U13_BB 4 0.399 -0.468 50.182 -1.690 0.093 1.692 26.228 A A 5 6 24.461 B B 12 11 2.785 10.781 -1.252 -2.049 AA_U5U6:A11G12_BB 5 0.515 -1.169 23.940 -6.603 2.860 2.510 31.011 A A 6 7 11.559 B B 11 10 2.920 6.141 -0.041 -1.833 AA_U6C7:G10A11_BB 6 0.003 -0.005 30.411 -4.420 0.076 2.543 27.483 A A 7 8 6.556 B B 10 9 2.753 3.103 0.200 -1.803 AA_C7C8:G9G10_BB 7 2.816 -5.951 27.168 -4.415 0.143 database_2 pdbx_database_status pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other 1 0 1997-06-05 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-03-02 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _pdbx_nmr_software.name ENSEMBLE OF 30 STRUCTURES Y BNL 1997-03-04 REL REL 30 BIOSYM refinement Discover G 1 n 1 G 1 A G 2 n 2 G 2 A A 3 n 3 A 3 A G 4 n 4 G 4 A U 5 n 5 U 5 A U 6 n 6 U 6 A C 7 n 7 C 7 A C 8 n 8 C 8 A G 9 n 1 G 9 B G 10 n 2 G 10 B A 11 n 3 A 11 B G 12 n 4 G 12 B U 13 n 5 U 13 B U 14 n 6 U 14 B C 15 n 7 C 15 B C 16 n 8 C 16 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 refinement AMBER TANDEM GU MISMATCHES IN RNA, NMR, 30 STRUCTURES 1 N N 1 N N hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 B C 16 B N3 C 8 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 B C 16 B O2 C 8 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 B C 16 B N4 C 8 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 B C 15 B N3 C 7 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 B C 15 B O2 C 7 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 B C 15 B N4 C 7 1_555 hydrog WATSON-CRICK A A 3 A N1 A 3 1_555 B U 14 B N3 U 6 1_555 hydrog WATSON-CRICK A A 3 A N6 A 3 1_555 B U 14 B O4 U 6 1_555 hydrog TYPE_28_PAIR A G 4 A N1 G 4 1_555 B U 13 B O2 U 5 1_555 hydrog TYPE_28_PAIR A G 4 A O6 G 4 1_555 B U 13 B N3 U 5 1_555 hydrog TYPE_28_PAIR A U 5 A N3 U 5 1_555 B G 12 B O6 G 4 1_555 hydrog TYPE_28_PAIR A U 5 A O2 U 5 1_555 B G 12 B N1 G 4 1_555 hydrog WATSON-CRICK A U 6 A N3 U 6 1_555 B A 11 B N1 A 3 1_555 hydrog WATSON-CRICK A U 6 A O4 U 6 1_555 B A 11 B N6 A 3 1_555 hydrog WATSON-CRICK A C 7 A N3 C 7 1_555 B G 10 B N1 G 2 1_555 hydrog WATSON-CRICK A C 7 A N4 C 7 1_555 B G 10 B O6 G 2 1_555 hydrog WATSON-CRICK A C 7 A O2 C 7 1_555 B G 10 B N2 G 2 1_555 hydrog WATSON-CRICK A C 8 A N3 C 8 1_555 B G 9 B N1 G 1 1_555 hydrog WATSON-CRICK A C 8 A N4 C 8 1_555 B G 9 B O6 G 1 1_555 hydrog WATSON-CRICK A C 8 A O2 C 8 1_555 B G 9 B N2 G 1 1_555 RNA RIBONUCLEIC ACID, G:U MISMATCH, RNA 1QES PDB 1 1QES 1 8 1QES 1 8 1QES A 1 1 8 9 16 1QES 9 16 1QES B 1 1 8 1 P 1