1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Mcdowell, J.A.
He, L.
Chen, X.
Turner, D.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
US
Biochemistry
BICHAW
0033
0006-2960
36
8030
8038
10.1021/bi970122c
9201950
Investigation of the structural basis for thermodynamic stabilities of tandem GU wobble pairs: NMR structures of (rGGAGUUCC)2 and (rGGAUGUCC)2.
1997
10.2210/pdb1qes/pdb
pdb_00001qes
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
ANTI-PARALLEL RNA DUPLEX, TANDEM GUANOSINE/ URIDINE MISMATCHES
2542.561
RNA (5'-R(*GP*GP*AP*GP*UP*UP*CP*C)-3')
2
syn
polymer
(RGGAGUUCC)2
no
no
GGAGUUCC
GGAGUUCC
A,B
polyribonucleotide
n
n
n
n
n
n
n
n
-13.267
1
19
A
1
B
16
-0.869
A_G1:C16_B
1
-7.275
0.382
-0.536
-0.079
-2.964
1
19
A
2
B
15
-0.554
A_G2:C15_B
2
5.050
0.009
0.037
0.000
4.697
1
20
A
3
B
14
-3.700
A_A3:U14_B
3
3.923
0.066
-0.019
-0.070
-0.035
1
28
A
4
B
13
7.473
A_G4:U13_B
4
-6.566
-2.349
0.149
-0.320
-3.536
1
28
A
5
B
12
6.523
A_U5:G12_B
5
-6.122
2.545
0.133
-0.358
-5.914
1
20
A
6
B
11
-1.119
A_U6:A11_B
6
1.578
0.007
0.011
-0.104
-0.405
1
19
A
7
B
10
-1.409
A_C7:G10_B
7
6.194
0.147
0.066
-0.048
13.068
1
19
A
8
B
9
-2.789
A_C8:G9_B
8
-1.286
-0.298
-0.598
-0.089
2.298
29.709
A
A
1
2
13.008
B
B
16
15
2.733
6.611
-0.269
-1.756
AA_G1G2:C15C16_BB
1
-2.131
4.193
28.904
-4.507
0.176
2.482
30.378
A
A
2
3
10.343
B
B
15
14
2.848
5.392
-0.010
-1.853
AA_G2A3:U14C15_BB
2
0.802
-1.538
29.896
-4.424
0.150
2.126
26.733
A
A
3
4
17.419
B
B
14
13
2.884
7.937
1.401
-2.157
AA_A3G4:U13U14_BB
3
-0.040
0.087
25.549
-6.282
-3.039
2.945
50.692
A
A
4
5
8.684
B
B
13
12
3.115
7.412
-0.057
-1.030
AA_G4U5:G12U13_BB
4
0.399
-0.468
50.182
-1.690
0.093
1.692
26.228
A
A
5
6
24.461
B
B
12
11
2.785
10.781
-1.252
-2.049
AA_U5U6:A11G12_BB
5
0.515
-1.169
23.940
-6.603
2.860
2.510
31.011
A
A
6
7
11.559
B
B
11
10
2.920
6.141
-0.041
-1.833
AA_U6C7:G10A11_BB
6
0.003
-0.005
30.411
-4.420
0.076
2.543
27.483
A
A
7
8
6.556
B
B
10
9
2.753
3.103
0.200
-1.803
AA_C7C8:G9G10_BB
7
2.816
-5.951
27.168
-4.415
0.143
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1997-06-05
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-03-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_nmr_software.name
ENSEMBLE OF 30 STRUCTURES
Y
BNL
1997-03-04
REL
REL
30
BIOSYM
refinement
Discover
G
1
n
1
G
1
A
G
2
n
2
G
2
A
A
3
n
3
A
3
A
G
4
n
4
G
4
A
U
5
n
5
U
5
A
U
6
n
6
U
6
A
C
7
n
7
C
7
A
C
8
n
8
C
8
A
G
9
n
1
G
9
B
G
10
n
2
G
10
B
A
11
n
3
A
11
B
G
12
n
4
G
12
B
U
13
n
5
U
13
B
U
14
n
6
U
14
B
C
15
n
7
C
15
B
C
16
n
8
C
16
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
refinement
AMBER
TANDEM GU MISMATCHES IN RNA, NMR, 30 STRUCTURES
1
N
N
1
N
N
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
B
C
16
B
N3
C
8
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
B
C
16
B
O2
C
8
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
B
C
16
B
N4
C
8
1_555
hydrog
WATSON-CRICK
A
G
2
A
N1
G
2
1_555
B
C
15
B
N3
C
7
1_555
hydrog
WATSON-CRICK
A
G
2
A
N2
G
2
1_555
B
C
15
B
O2
C
7
1_555
hydrog
WATSON-CRICK
A
G
2
A
O6
G
2
1_555
B
C
15
B
N4
C
7
1_555
hydrog
WATSON-CRICK
A
A
3
A
N1
A
3
1_555
B
U
14
B
N3
U
6
1_555
hydrog
WATSON-CRICK
A
A
3
A
N6
A
3
1_555
B
U
14
B
O4
U
6
1_555
hydrog
TYPE_28_PAIR
A
G
4
A
N1
G
4
1_555
B
U
13
B
O2
U
5
1_555
hydrog
TYPE_28_PAIR
A
G
4
A
O6
G
4
1_555
B
U
13
B
N3
U
5
1_555
hydrog
TYPE_28_PAIR
A
U
5
A
N3
U
5
1_555
B
G
12
B
O6
G
4
1_555
hydrog
TYPE_28_PAIR
A
U
5
A
O2
U
5
1_555
B
G
12
B
N1
G
4
1_555
hydrog
WATSON-CRICK
A
U
6
A
N3
U
6
1_555
B
A
11
B
N1
A
3
1_555
hydrog
WATSON-CRICK
A
U
6
A
O4
U
6
1_555
B
A
11
B
N6
A
3
1_555
hydrog
WATSON-CRICK
A
C
7
A
N3
C
7
1_555
B
G
10
B
N1
G
2
1_555
hydrog
WATSON-CRICK
A
C
7
A
N4
C
7
1_555
B
G
10
B
O6
G
2
1_555
hydrog
WATSON-CRICK
A
C
7
A
O2
C
7
1_555
B
G
10
B
N2
G
2
1_555
hydrog
WATSON-CRICK
A
C
8
A
N3
C
8
1_555
B
G
9
B
N1
G
1
1_555
hydrog
WATSON-CRICK
A
C
8
A
N4
C
8
1_555
B
G
9
B
O6
G
1
1_555
hydrog
WATSON-CRICK
A
C
8
A
O2
C
8
1_555
B
G
9
B
N2
G
1
1_555
RNA
RIBONUCLEIC ACID, G:U MISMATCH, RNA
1QES
PDB
1
1QES
1
8
1QES
1
8
1QES
A
1
1
8
9
16
1QES
9
16
1QES
B
1
1
8
1
P 1