0.012136 0.007007 0.000000 0.000000 0.014013 0.000000 0.000000 0.000000 0.004847 0.00000 0.00000 0.00000 Vogt, J. Schulz, G.E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 82.400 82.400 206.300 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C16 H34 O5 306.438 (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Cl2 Pt 265.984 PLATINUM(II) DI-CHLORIDE non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 0969-2126 7 1301 10.1016/S0969-2126(00)80063-5 10545325 The Structure of the Outer Membrane Protein Ompx from Escherichia Coli Reveals Mechanisms of Virulence 1999 US Proteins PSFGEY 0867 0887-3585 34 167 10.1002/(SICI)1097-0134(19990201)34:2<167::AID-PROT2>3.3.CO;2-8 10022352 Strategy for Membrane Protein Crystallization Exemplified with Ompa and Ompx 1999 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 IMAGE PLATE 1998-04-15 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 0.9057 1.0 X11 EMBL/DESY, HAMBURG 0.9057 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 16371.768 OUTER MEMBRANE PROTEIN X YES 1 man polymer 306.438 (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE 1 syn non-polymer 265.984 PLATINUM(II) DI-CHLORIDE 2 syn non-polymer 18.015 water 72 nat water no no ATSTVTGGYAQSDAQGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASIY GVVGVGYGKFQTTEYPTYKNDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF ATSTVTGGYAQSDAQGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASIY GVVGVGYGKFQTTEYPTYKNDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample MEMBRANE OMPX 562 ESCHERICHIA COLI CYTOPLASM 469008 ESCHERICHIA COLI BL21(DE3) PET3B 1 4.1 70 4.60 30 % (V/V) 2-PROPANOL, 20 % (V/V) GLYCEROL, 0.2 M CACL2, 0.1 M NA-ACETATE PH 4.6 diffrn_source repository Initial release Version format compliance Version format compliance Data collection 1 0 1999-10-10 1 1 2011-05-08 1 2 2011-07-13 1 3 2019-07-24 _diffrn_source.pdbx_synchrotron_site SHEET DETERMINATION METHOD: DSSP THE SHEET PRESENTED AS "A" ON SHEET RECORDS BELOW IS ACTUALLY AN 8-STRANDED BETA-BARREL. THIS IS REPRESENTED BY A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. PDBE Y PDBE 1999-06-23 REL C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE PCL PLATINUM(II) DI-CHLORIDE HOH water ENGINEERED RESIDUE IN CHAIN A, HIS 123 TO ASN C8E 153 2 C8E C8E 153 A PCL 154 3 PCL PCL 154 A PCL 155 3 PCL PCL 155 A HOH 2001 4 HOH HOH 2001 A HOH 2002 4 HOH HOH 2002 A HOH 2003 4 HOH HOH 2003 A HOH 2004 4 HOH HOH 2004 A HOH 2005 4 HOH HOH 2005 A HOH 2006 4 HOH HOH 2006 A HOH 2007 4 HOH HOH 2007 A HOH 2008 4 HOH HOH 2008 A HOH 2009 4 HOH HOH 2009 A HOH 2010 4 HOH HOH 2010 A HOH 2011 4 HOH HOH 2011 A HOH 2012 4 HOH HOH 2012 A HOH 2013 4 HOH HOH 2013 A HOH 2014 4 HOH HOH 2014 A HOH 2015 4 HOH HOH 2015 A HOH 2016 4 HOH HOH 2016 A HOH 2017 4 HOH HOH 2017 A HOH 2018 4 HOH HOH 2018 A HOH 2019 4 HOH HOH 2019 A HOH 2020 4 HOH HOH 2020 A HOH 2021 4 HOH HOH 2021 A HOH 2022 4 HOH HOH 2022 A HOH 2023 4 HOH HOH 2023 A HOH 2024 4 HOH HOH 2024 A HOH 2025 4 HOH HOH 2025 A HOH 2026 4 HOH HOH 2026 A HOH 2027 4 HOH HOH 2027 A HOH 2028 4 HOH HOH 2028 A HOH 2029 4 HOH HOH 2029 A HOH 2030 4 HOH HOH 2030 A HOH 2031 4 HOH HOH 2031 A HOH 2032 4 HOH HOH 2032 A HOH 2033 4 HOH HOH 2033 A HOH 2034 4 HOH HOH 2034 A HOH 2035 4 HOH HOH 2035 A HOH 2036 4 HOH HOH 2036 A HOH 2037 4 HOH HOH 2037 A HOH 2038 4 HOH HOH 2038 A HOH 2039 4 HOH HOH 2039 A HOH 2040 4 HOH HOH 2040 A HOH 2041 4 HOH HOH 2041 A HOH 2042 4 HOH HOH 2042 A HOH 2043 4 HOH HOH 2043 A HOH 2044 4 HOH HOH 2044 A HOH 2045 4 HOH HOH 2045 A HOH 2046 4 HOH HOH 2046 A HOH 2047 4 HOH HOH 2047 A HOH 2048 4 HOH HOH 2048 A HOH 2049 4 HOH HOH 2049 A HOH 2050 4 HOH HOH 2050 A HOH 2051 4 HOH HOH 2051 A HOH 2052 4 HOH HOH 2052 A HOH 2053 4 HOH HOH 2053 A HOH 2054 4 HOH HOH 2054 A HOH 2055 4 HOH HOH 2055 A HOH 2056 4 HOH HOH 2056 A HOH 2057 4 HOH HOH 2057 A HOH 2058 4 HOH HOH 2058 A HOH 2059 4 HOH HOH 2059 A HOH 2060 4 HOH HOH 2060 A HOH 2061 4 HOH HOH 2061 A HOH 2062 4 HOH HOH 2062 A HOH 2063 4 HOH HOH 2063 A HOH 2064 4 HOH HOH 2064 A HOH 2065 4 HOH HOH 2065 A HOH 2066 4 HOH HOH 2066 A HOH 2067 4 HOH HOH 2067 A HOH 2068 4 HOH HOH 2068 A HOH 2069 4 HOH HOH 2069 A HOH 2070 4 HOH HOH 2070 A HOH 2071 4 HOH HOH 2071 A HOH 3001 4 HOH HOH 3001 A ALA 1 n 1 ALA 1 A THR 2 n 2 THR 2 A SER 3 n 3 SER 3 A THR 4 n 4 THR 4 A VAL 5 n 5 VAL 5 A THR 6 n 6 THR 6 A GLY 7 n 7 GLY 7 A GLY 8 n 8 GLY 8 A TYR 9 n 9 TYR 9 A ALA 10 n 10 ALA 10 A GLN 11 n 11 GLN 11 A SER 12 n 12 SER 12 A ASP 13 n 13 ASP 13 A ALA 14 n 14 ALA 14 A GLN 15 n 15 GLN 15 A GLY 16 n 16 GLY 16 A GLN 17 n 17 GLN 17 A MET 18 n 18 MET 18 A ASN 19 n 19 ASN 19 A LYS 20 n 20 LYS 20 A MET 21 n 21 MET 21 A GLY 22 n 22 GLY 22 A GLY 23 n 23 GLY 23 A PHE 24 n 24 PHE 24 A ASN 25 n 25 ASN 25 A LEU 26 n 26 LEU 26 A LYS 27 n 27 LYS 27 A TYR 28 n 28 TYR 28 A ARG 29 n 29 ARG 29 A TYR 30 n 30 TYR 30 A GLU 31 n 31 GLU 31 A GLU 32 n 32 GLU 32 A ASP 33 n 33 ASP 33 A ASN 34 n 34 ASN 34 A SER 35 n 35 SER 35 A PRO 36 n 36 PRO 36 A LEU 37 n 37 LEU 37 A GLY 38 n 38 GLY 38 A VAL 39 n 39 VAL 39 A ILE 40 n 40 ILE 40 A GLY 41 n 41 GLY 41 A SER 42 n 42 SER 42 A PHE 43 n 43 PHE 43 A THR 44 n 44 THR 44 A TYR 45 n 45 TYR 45 A THR 46 n 46 THR 46 A GLU 47 n 47 GLU 47 A LYS 48 n 48 LYS 48 A SER 49 n 49 SER 49 A ARG 50 n 50 ARG 50 A THR 51 n 51 THR 51 A ALA 52 n 52 ALA 52 A SER 53 n 53 SER 53 A SER 54 n 54 SER 54 A GLY 55 n 55 GLY 55 A ASP 56 n 56 ASP 56 A TYR 57 n 57 TYR 57 A ASN 58 n 58 ASN 58 A LYS 59 n 59 LYS 59 A ASN 60 n 60 ASN 60 A GLN 61 n 61 GLN 61 A TYR 62 n 62 TYR 62 A TYR 63 n 63 TYR 63 A GLY 64 n 64 GLY 64 A ILE 65 n 65 ILE 65 A THR 66 n 66 THR 66 A ALA 67 n 67 ALA 67 A GLY 68 n 68 GLY 68 A PRO 69 n 69 PRO 69 A ALA 70 n 70 ALA 70 A TYR 71 n 71 TYR 71 A ARG 72 n 72 ARG 72 A ILE 73 n 73 ILE 73 A ASN 74 n 74 ASN 74 A ASP 75 n 75 ASP 75 A TRP 76 n 76 TRP 76 A ALA 77 n 77 ALA 77 A SER 78 n 78 SER 78 A ILE 79 n 79 ILE 79 A TYR 80 n 80 TYR 80 A GLY 81 n 81 GLY 81 A VAL 82 n 82 VAL 82 A VAL 83 n 83 VAL 83 A GLY 84 n 84 GLY 84 A VAL 85 n 85 VAL 85 A GLY 86 n 86 GLY 86 A TYR 87 n 87 TYR 87 A GLY 88 n 88 GLY 88 A LYS 89 n 89 LYS 89 A PHE 90 n 90 PHE 90 A GLN 91 n 91 GLN 91 A THR 92 n 92 THR 92 A THR 93 n 93 THR 93 A GLU 94 n 94 GLU 94 A TYR 95 n 95 TYR 95 A PRO 96 n 96 PRO 96 A THR 97 n 97 THR 97 A TYR 98 n 98 TYR 98 A LYS 99 n 99 LYS 99 A ASN 100 n 100 ASN 100 A ASP 101 n 101 ASP 101 A THR 102 n 102 THR 102 A SER 103 n 103 SER 103 A ASP 104 n 104 ASP 104 A TYR 105 n 105 TYR 105 A GLY 106 n 106 GLY 106 A PHE 107 n 107 PHE 107 A SER 108 n 108 SER 108 A TYR 109 n 109 TYR 109 A GLY 110 n 110 GLY 110 A ALA 111 n 111 ALA 111 A GLY 112 n 112 GLY 112 A LEU 113 n 113 LEU 113 A GLN 114 n 114 GLN 114 A PHE 115 n 115 PHE 115 A ASN 116 n 116 ASN 116 A PRO 117 n 117 PRO 117 A MET 118 n 118 MET 118 A GLU 119 n 119 GLU 119 A ASN 120 n 120 ASN 120 A VAL 121 n 121 VAL 121 A ALA 122 n 122 ALA 122 A LEU 123 n 123 LEU 123 A ASP 124 n 124 ASP 124 A PHE 125 n 125 PHE 125 A SER 126 n 126 SER 126 A TYR 127 n 127 TYR 127 A GLU 128 n 128 GLU 128 A GLN 129 n 129 GLN 129 A SER 130 n 130 SER 130 A ARG 131 n 131 ARG 131 A ILE 132 n 132 ILE 132 A ARG 133 n 133 ARG 133 A SER 134 n 134 SER 134 A VAL 135 n 135 VAL 135 A ASP 136 n 136 ASP 136 A VAL 137 n 137 VAL 137 A GLY 138 n 138 GLY 138 A THR 139 n 139 THR 139 A TRP 140 n 140 TRP 140 A ILE 141 n 141 ILE 141 A ALA 142 n 142 ALA 142 A GLY 143 n 143 GLY 143 A VAL 144 n 144 VAL 144 A GLY 145 n 145 GLY 145 A TYR 146 n 146 TYR 146 A ARG 147 n 147 ARG 147 A PHE 148 n 148 PHE 148 A software_defined_assembly PISA 1 monomeric A MET 21 A SD MET 21 1_555 A PCL 154 C PT PCL 1_555 A PCL 154 C CL1 PCL 1_555 93.7 A MET 21 A SD MET 21 1_555 A PCL 154 C PT PCL 1_555 A MET 18 A SD MET 18 1_555 175.7 A PCL 154 C CL1 PCL 1_555 A PCL 154 C PT PCL 1_555 A MET 18 A SD MET 18 1_555 82.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O MET 21 A O MET 21 A N SER 12 A N SER 12 A O VAL 5 A O VAL 5 A N TYR 146 A N TYR 146 A O VAL 135 A O VAL 135 A N ILE 132 A N ILE 132 A O LEU 123 A O LEU 123 A N PHE 115 A N PHE 115 A O TYR 98 A O TYR 98 A N GLU 94 A N GLU 94 A O VAL 83 A O VAL 83 A N ALA 67 A N ALA 67 A O ASN 58 A O ASN 58 A N ARG 50 A N ARG 50 A O VAL 39 A O VAL 39 A N TYR 30 A N TYR 30 1 A HOH 2023 E HOH 1 A CL2 PCL 155 D CL2 PCL 1 1 N 1 A THR 102 10.94 1 A ASP 104 10.56 1 -11.61 1.80 110.60 98.99 A A A N CA CB MET MET MET 21 21 21 N 1 -7.60 1.10 119.40 111.80 A A A NH1 CZ NH2 ARG ARG ARG 29 29 29 N 1 7.46 0.50 120.30 127.76 A A A NE CZ NH1 ARG ARG ARG 29 29 29 N 1 -3.63 0.60 121.00 117.37 A A A CB CG CD1 TYR TYR TYR 30 30 30 N 1 11.39 1.80 110.60 121.99 A A A N CA CB GLU GLU GLU 32 32 32 N 1 -4.39 0.70 120.80 116.41 A A A CB CG CD1 PHE PHE PHE 43 43 43 N 1 -4.80 0.60 121.00 116.20 A A A CB CG CD1 TYR TYR TYR 45 45 45 N 1 7.97 0.90 118.30 126.27 A A A CB CG OD1 ASP ASP ASP 104 104 104 N 1 -13.48 2.00 121.60 108.12 A A A CG CD OE1 GLN GLN GLN 114 114 114 N 1 -5.67 0.70 120.80 115.13 A A A CB CG CD1 PHE PHE PHE 115 115 115 N 1 A GLN 17 -60.55 85.65 1 A ASN 19 -47.32 175.07 1 A ARG 133 61.18 -112.38 44 0.246 0.204 1.90 34 1037 20466 5.0 95 1.539 0.046 RANDOM 1 THROUGHOUT 0 MIR 0.125 0.128 1.90 34 72 1255 25 0 1158 0.020 0.034 27 1.900 34.000 1QJ8 20466 0.000 0.06100 1 14.6000 3.700 95.0 1.90 2.00 2.900 0.27400 1 3.00 92.0 refinement REFMAC data reduction MOSFLM data scaling SCALA phasing MLPHARE OUTER MEMBRANE PROTEIN X CRYSTAL STRUCTURE OF THE OUTER MEMBRANE PROTEIN OMPX FROM ESCHERICHIA COLI 1 N N 2 N N 3 N N 3 N N 4 N N metalc 2.399 A PCL 154 C PT PCL 1_555 A MET 21 A SD MET 21 1_555 metalc 2.588 A PCL 154 C PT PCL 1_555 A MET 18 A SD MET 18 1_555 MEMBRANE PROTEIN MEMBRANE PROTEIN, BETA-BARREL, BACTERIAL DEFENSE SYSTEM, PLATINUM COMPLEX STRUCTURE A TYR 95 A TYR 95 1 A PRO 96 A PRO 96 1.78 OMPX_ECOLI UNP 1 P36546 24 171 1QJ8 1 148 P36546 A 1 1 148 1 HIS engineered mutation ASN 100 1QJ8 A P36546 UNP 123 100 9 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A MET 21 A MET 21 A GLU 31 A GLU 31 A THR 2 A THR 2 A ALA 14 A ALA 14 A VAL 135 A VAL 135 A ARG 147 A ARG 147 A VAL 121 A VAL 121 A ILE 132 A ILE 132 A TYR 98 A TYR 98 A PHE 115 A PHE 115 A ALA 77 A ALA 77 A GLU 94 A GLU 94 A TYR 57 A TYR 57 A TYR 71 A TYR 71 A LEU 37 A LEU 37 A THR 51 A THR 51 A GLY 22 A GLY 22 A TYR 30 A TYR 30 BINDING SITE FOR RESIDUE C8E A 153 Software 6 BINDING SITE FOR RESIDUE PCL A 154 Software 4 BINDING SITE FOR RESIDUE PCL A 155 Software 1 A PRO 36 A PRO 36 6 1_555 A LEU 37 A LEU 37 6 1_555 A TYR 71 A TYR 71 6 1_555 A ILE 79 A ILE 79 6 1_555 A TYR 80 A TYR 80 6 1_555 A GLY 81 A GLY 81 6 1_555 A MET 18 A MET 18 4 1_555 A MET 21 A MET 21 4 1_555 A LYS 48 A LYS 48 4 1_555 A ASN 60 A ASN 60 4 1_555 A MET 118 A MET 118 1 1_555 155 H 3 2