1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Wakefield, R.I.D.
Smith, B.O.
Nan, X.
Free, A.
Soteriou, A.
Uhrin, D.
Bird, A.P.
Barlow, P.N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
291
1055
10.1006/JMBI.1999.3023
10518942
The Solution Structure of the Domain from Mecp2 that Binds to Methylated DNA
1999
US
Mol.Cell.Biol.
MCEBD4
2044
0270-7306
18
6538
9774669
Identification and Characterisation of a Family of Mammalian Methyl-Cpg Binding Proteins
1998
UK
Nature
NATUAS
0006
0028-0836
393
386
10.1038/30764
9620804
Transcriptional Repression by the Methyl-Cpg Binding Protein Mecp2 Involves a Histone Deacetylase Complex
1998
Cancer Surv.
0261-2429
28
87
101
8977030
The relationship of DNA methylation to cancer.
1996
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
245
645
10.1006/JMBI.1994.0053
7844833
Calculation of Protein Structures with Ambiguous Distance Restraints Automated Assignment of Ambiguous Noe Crosspeaks and Disulfide Connectivities
1995
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
64
1123
10.1016/0092-8674(91)90267-3
2004419
DNA Methylation Inhibits Transcription Indirectly Via a Methyl-Cpg Binding Protein
1991
UK
Nature
NATUAS
0006
0028-0836
321
209
10.1038/321209A0
2423876
Cpg-Rich Islands and the Function of DNA Methylation
1986
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
10261.530
METHYL-CPG-BINDING PROTEIN 2
MCPG BINDING DOMAIN OF MECP2
1
man
polymer
MBD
no
no
ASASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFD
FTVTGRGSGSGC
ASASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFD
FTVTGRGSGSGC
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
HOMO SAPIENS
INCLUSION BODIES
469008
ESCHERICHIA COLI
BL21(DE3)
PET6HMBD
citation
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
1999-10-08
1
1
2011-05-08
1
2
2011-07-13
1
3
2018-04-18
_citation.journal_id_ISSN
_citation.page_last
_citation.title
HELIX
DETERMINATION METHOD: AUTHOR PROVIDED.
SHEET
DETERMINATION METHOD: AUTHOR PROVIDED.
PDBE
Y
PDBE
1999-07-12
REL
LOWEST ENERGIES
30
28
NOESY
COSY
TOCSY
HNCA
HNCOCA
CBCACONH
HNCO
HNCACB
HCCH-TOCSY
HCCONH-TOCSY
CCONH-TOCSY
15N-EDITTED HSQC
13C-EDITTED HSQC
HBHACONH
15N-EDITTED HSQC-NOESY
13C-EDITTED HSQC-NOESY
6.0
pH
291
K
AMBIGUOUS DISTANCE RESTRAINTS WERE USED SEE M.NILGES CITATION
simulated annealing
5
90% H2O / 10% D2O
BRUNGER
refinement
X-PLOR
structure solution
VNMR
structure solution
AZARA
structure solution
ANSIG
structure solution
XPLOR
600
Varian
INOVA
ALA
1
n
1
ALA
1
A
SER
2
n
2
SER
2
A
ALA
3
n
3
ALA
3
A
SER
4
n
4
SER
4
A
PRO
5
n
5
PRO
5
A
LYS
6
n
6
LYS
6
A
GLN
7
n
7
GLN
7
A
ARG
8
n
8
ARG
8
A
ARG
9
n
9
ARG
9
A
SER
10
n
10
SER
10
A
ILE
11
n
11
ILE
11
A
ILE
12
n
12
ILE
12
A
ARG
13
n
13
ARG
13
A
ASP
14
n
14
ASP
14
A
ARG
15
n
15
ARG
15
A
GLY
16
n
16
GLY
16
A
PRO
17
n
17
PRO
17
A
MET
18
n
18
MET
18
A
TYR
19
n
19
TYR
19
A
ASP
20
n
20
ASP
20
A
ASP
21
n
21
ASP
21
A
PRO
22
n
22
PRO
22
A
THR
23
n
23
THR
23
A
LEU
24
n
24
LEU
24
A
PRO
25
n
25
PRO
25
A
GLU
26
n
26
GLU
26
A
GLY
27
n
27
GLY
27
A
TRP
28
n
28
TRP
28
A
THR
29
n
29
THR
29
A
ARG
30
n
30
ARG
30
A
LYS
31
n
31
LYS
31
A
LEU
32
n
32
LEU
32
A
LYS
33
n
33
LYS
33
A
GLN
34
n
34
GLN
34
A
ARG
35
n
35
ARG
35
A
LYS
36
n
36
LYS
36
A
SER
37
n
37
SER
37
A
GLY
38
n
38
GLY
38
A
ARG
39
n
39
ARG
39
A
SER
40
n
40
SER
40
A
ALA
41
n
41
ALA
41
A
GLY
42
n
42
GLY
42
A
LYS
43
n
43
LYS
43
A
TYR
44
n
44
TYR
44
A
ASP
45
n
45
ASP
45
A
VAL
46
n
46
VAL
46
A
TYR
47
n
47
TYR
47
A
LEU
48
n
48
LEU
48
A
ILE
49
n
49
ILE
49
A
ASN
50
n
50
ASN
50
A
PRO
51
n
51
PRO
51
A
GLN
52
n
52
GLN
52
A
GLY
53
n
53
GLY
53
A
LYS
54
n
54
LYS
54
A
ALA
55
n
55
ALA
55
A
PHE
56
n
56
PHE
56
A
ARG
57
n
57
ARG
57
A
SER
58
n
58
SER
58
A
LYS
59
n
59
LYS
59
A
VAL
60
n
60
VAL
60
A
GLU
61
n
61
GLU
61
A
LEU
62
n
62
LEU
62
A
ILE
63
n
63
ILE
63
A
ALA
64
n
64
ALA
64
A
TYR
65
n
65
TYR
65
A
PHE
66
n
66
PHE
66
A
GLU
67
n
67
GLU
67
A
LYS
68
n
68
LYS
68
A
VAL
69
n
69
VAL
69
A
GLY
70
n
70
GLY
70
A
ASP
71
n
71
ASP
71
A
THR
72
n
72
THR
72
A
SER
73
n
73
SER
73
A
LEU
74
n
74
LEU
74
A
ASP
75
n
75
ASP
75
A
PRO
76
n
76
PRO
76
A
ASN
77
n
77
ASN
77
A
ASP
78
n
78
ASP
78
A
PHE
79
n
79
PHE
79
A
ASP
80
n
80
ASP
80
A
PHE
81
n
81
PHE
81
A
THR
82
n
82
THR
82
A
VAL
83
n
83
VAL
83
A
THR
84
n
84
THR
84
A
GLY
85
n
85
GLY
85
A
ARG
86
n
86
ARG
86
A
GLY
87
n
87
GLY
87
A
SER
88
n
88
SER
88
A
GLY
89
n
89
GLY
89
A
SER
90
n
90
SER
90
A
GLY
91
n
91
GLY
91
A
CYS
92
n
92
CYS
92
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
49
A
O
ILE
49
A
N
THR
29
A
N
THR
29
A
O
PHE
56
A
O
PHE
56
A
N
ILE
49
A
N
ILE
49
1
A
A
O
HH21
TRP
ARG
28
30
1.53
1
A
A
H
O
ASN
LYS
50
54
1.57
4
A
A
H
O
ASN
LYS
50
54
1.52
5
A
A
O
H
ASN
GLY
50
53
1.59
6
A
A
H
O
ASN
LYS
50
54
1.55
6
A
A
O
H
THR
ILE
29
49
1.60
7
A
A
H
O
ASN
LYS
50
54
1.58
9
A
A
H
O
ASN
LYS
50
54
1.56
11
A
A
H
O
ARG
LYS
35
43
1.53
12
A
A
H
O
ASN
LYS
50
54
1.52
13
A
A
O
H
ASP
ASP
75
78
1.59
17
A
A
O
H
ARG
GLY
35
42
1.57
18
A
A
H
O
ASN
LYS
50
54
1.60
19
A
A
H
O
ASN
LYS
50
54
1.58
19
A
A
O
H
ASP
ASP
75
78
1.60
21
A
A
O
H
THR
ILE
29
49
1.55
22
A
A
H
O
ARG
LYS
35
43
1.54
23
A
A
O
H
ASP
ASP
75
78
1.58
23
A
A
O
H
ASN
GLY
50
53
1.59
25
A
A
OE1
HH
GLN
TYR
34
44
1.58
26
A
A
O
H
ASN
GLY
50
53
1.55
28
A
A
O
H
ASP
ASP
75
78
1.59
11
A
ASN
50
-12.99
15
A
ASN
50
-12.96
18
A
ASN
50
-12.37
19
A
ASN
50
-12.88
1
A
SER
4
-159.65
59.62
1
A
PRO
5
-58.86
-169.50
1
A
LYS
6
43.09
89.32
1
A
SER
10
-164.62
65.64
1
A
ILE
12
-94.32
40.06
1
A
ARG
13
78.97
121.54
1
A
ASP
14
-45.54
96.24
1
A
PRO
17
-79.62
-155.79
1
A
MET
18
-171.71
105.37
1
A
ASP
20
-116.92
73.19
1
A
THR
23
-90.65
50.06
1
A
PRO
25
-22.79
145.08
1
A
ARG
39
-107.60
-70.29
1
A
SER
40
-98.72
31.89
1
A
THR
72
-149.86
23.75
1
A
SER
73
-152.88
52.37
1
A
LEU
74
-154.53
-44.03
1
A
ASP
75
63.66
100.81
1
A
PHE
81
-105.96
77.93
1
A
THR
84
-99.39
46.14
1
A
ARG
86
-145.74
-156.00
2
A
SER
2
58.56
88.60
2
A
SER
4
-157.07
71.78
2
A
LYS
6
-110.69
79.14
2
A
ILE
12
-93.43
52.60
2
A
ARG
13
54.81
82.08
2
A
ASP
14
-115.16
50.05
2
A
TYR
19
-67.18
-70.13
2
A
ASP
20
-64.08
79.61
2
A
THR
23
-87.97
49.60
2
A
PRO
25
-45.43
169.24
2
A
LYS
36
-105.02
-71.49
2
A
SER
37
64.29
-81.97
2
A
ALA
41
-52.53
179.32
2
A
THR
72
-145.95
22.87
2
A
LEU
74
-144.39
-43.48
2
A
ASP
75
62.80
107.90
2
A
ARG
86
-136.23
-154.11
2
A
SER
88
-147.17
20.39
2
A
SER
90
62.36
119.33
3
A
SER
4
-163.55
-64.44
3
A
LYS
6
-108.44
-158.99
3
A
GLN
7
63.09
87.11
3
A
SER
10
-160.70
80.67
3
A
ARG
13
63.87
175.63
3
A
PRO
17
-77.18
-164.77
3
A
MET
18
-157.92
-40.58
3
A
TYR
19
75.14
-65.89
3
A
ASP
20
-65.57
89.30
3
A
PRO
25
-40.79
166.64
3
A
SER
37
-100.29
-163.46
3
A
ARG
39
179.38
-47.65
3
A
SER
40
-95.21
49.44
3
A
ASP
71
49.20
157.91
3
A
SER
73
165.06
-76.74
3
A
LEU
74
49.57
-166.16
3
A
ASP
75
-162.93
92.38
3
A
ARG
86
-53.68
89.35
4
A
SER
2
-150.24
55.02
4
A
SER
10
70.22
76.74
4
A
ARG
13
53.35
-172.80
4
A
TYR
19
-94.52
48.34
4
A
ASP
20
-175.44
79.84
4
A
PRO
25
-49.17
179.30
4
A
ARG
35
90.08
172.14
4
A
LYS
36
176.41
85.21
4
A
SER
37
54.96
-158.71
4
A
ALA
41
-54.40
85.49
4
A
PRO
51
-37.01
-28.96
4
A
GLN
52
-90.40
30.45
4
A
VAL
83
-65.65
-74.28
4
A
ARG
86
-89.84
-148.08
4
A
SER
90
60.15
125.21
5
A
SER
2
60.18
88.95
5
A
ALA
3
65.48
74.83
5
A
GLN
7
-157.72
55.15
5
A
SER
10
50.90
91.96
5
A
ILE
12
-94.28
57.45
5
A
ARG
15
59.74
164.33
5
A
PRO
17
-69.36
-179.75
5
A
ASP
20
-63.20
83.63
5
A
PRO
25
-45.14
166.03
5
A
SER
37
56.42
-84.02
5
A
SER
40
-105.02
48.67
5
A
ALA
41
-52.44
177.31
5
A
LEU
74
-133.65
-39.51
5
A
ASP
75
60.45
101.64
5
A
THR
84
-95.37
35.13
5
A
ARG
86
-131.60
-158.98
6
A
SER
4
-151.60
88.87
6
A
GLN
7
-128.21
-162.73
6
A
ILE
11
47.01
97.66
6
A
ILE
12
-90.50
57.33
6
A
ASP
14
-114.75
51.19
6
A
ASP
21
56.09
-96.46
6
A
THR
23
-156.43
15.68
6
A
PRO
25
-44.77
172.40
6
A
SER
37
-134.26
-51.19
6
A
ARG
39
177.55
-74.53
6
A
SER
40
-98.44
32.98
6
A
ALA
41
-52.57
-170.99
6
A
THR
72
-148.41
25.85
6
A
LEU
74
-130.31
-32.02
6
A
ASP
75
64.02
95.79
6
A
THR
84
-105.90
51.98
6
A
ARG
86
173.63
162.73
6
A
SER
90
62.59
85.89
7
A
SER
2
61.77
96.68
7
A
ALA
3
-140.94
53.71
7
A
SER
4
-163.55
-64.28
7
A
ILE
11
48.69
103.91
7
A
ARG
13
59.70
-176.07
7
A
ASP
20
175.65
72.19
7
A
ASP
21
55.69
-94.12
7
A
PRO
25
-47.54
170.52
7
A
SER
40
-102.22
47.30
7
A
ALA
41
-52.81
96.98
7
A
GLN
52
-91.62
32.84
7
A
THR
72
-149.97
26.13
7
A
SER
73
-164.64
45.66
7
A
LEU
74
-154.53
-35.00
7
A
ASP
75
50.27
102.33
7
A
VAL
83
67.59
-58.47
7
A
ARG
86
-139.65
-155.83
8
A
SER
4
-150.02
88.90
8
A
PRO
5
-68.58
-170.05
8
A
LYS
6
40.08
88.14
8
A
ARG
9
-58.28
176.02
8
A
SER
10
-166.60
38.25
8
A
ILE
11
50.54
119.65
8
A
ILE
12
-84.85
48.61
8
A
TYR
19
66.97
-74.15
8
A
ASP
20
-1.29
76.15
8
A
ASP
21
46.35
-93.30
8
A
THR
23
-159.37
82.72
8
A
PRO
25
-52.87
-179.20
8
A
LYS
36
-29.94
-89.83
8
A
SER
37
-91.36
-84.30
8
A
ARG
39
164.10
-34.84
8
A
ALA
41
56.75
128.73
8
A
ARG
57
-99.32
-60.58
8
A
LEU
74
-140.00
-41.57
8
A
ASP
75
64.18
109.04
8
A
THR
84
-90.31
43.76
8
A
ARG
86
-151.39
-155.27
8
A
SER
90
-152.66
-64.28
9
A
SER
4
62.00
81.45
9
A
PRO
5
-64.92
-167.24
9
A
LYS
6
41.94
82.47
9
A
GLN
7
-132.22
-51.06
9
A
SER
10
68.61
71.75
9
A
ILE
12
-94.30
53.76
9
A
PRO
17
-66.72
-166.54
9
A
TYR
19
-67.32
-73.91
9
A
ASP
20
-62.04
83.18
9
A
PRO
25
-40.86
167.97
9
A
LYS
36
-93.21
-88.69
9
A
SER
37
65.54
-67.97
9
A
PRO
51
-37.79
-29.48
9
A
GLN
52
-91.69
34.54
9
A
ARG
57
-133.70
-39.37
9
A
SER
58
-85.63
-77.43
9
A
LYS
59
161.18
-41.64
9
A
THR
72
-148.99
18.32
9
A
LEU
74
-154.48
67.54
9
A
ASP
75
60.85
-174.25
9
A
PRO
76
-75.83
-158.08
9
A
ASP
78
-146.20
-12.17
9
A
ASP
80
-46.21
98.71
9
A
THR
84
-88.18
45.48
10
A
ALA
3
-178.42
76.81
10
A
SER
4
65.53
72.47
10
A
PRO
5
-66.62
-170.83
10
A
LYS
6
41.08
79.89
10
A
GLN
7
-128.92
-165.15
10
A
ARG
13
64.31
-178.51
10
A
ASP
14
-52.06
90.44
10
A
MET
18
-169.19
109.07
10
A
ASP
20
-154.57
64.40
10
A
ASP
21
64.88
-103.39
10
A
THR
23
41.37
84.05
10
A
PRO
25
-47.45
165.59
10
A
ARG
35
88.28
-174.53
10
A
LYS
36
-149.19
-88.89
10
A
SER
37
-155.07
-56.99
10
A
SER
40
-96.23
43.20
10
A
ALA
41
-59.96
80.98
10
A
ALA
64
-52.81
-70.44
10
A
THR
72
-140.02
25.84
10
A
LEU
74
-135.23
-40.13
10
A
ASP
75
64.29
107.65
10
A
THR
84
-92.69
42.61
10
A
ARG
86
-136.67
-148.63
10
A
SER
88
-92.66
34.33
11
A
GLN
7
-135.64
-72.26
11
A
ARG
9
45.35
27.57
11
A
ILE
11
49.54
106.52
11
A
ARG
13
71.15
168.04
11
A
ASP
14
-47.90
102.98
11
A
TYR
19
-67.90
-71.33
11
A
ASP
20
-55.64
90.96
11
A
THR
23
-87.81
49.24
11
A
PRO
25
-48.40
168.82
11
A
TRP
28
-32.47
136.85
11
A
ARG
35
178.85
-173.56
11
A
LYS
36
-172.65
35.43
11
A
SER
37
59.31
-94.23
11
A
GLN
52
-141.61
-27.75
11
A
ALA
64
-52.88
-71.93
11
A
THR
72
-149.98
25.54
11
A
SER
73
-150.93
32.01
11
A
LEU
74
-144.29
-46.17
11
A
ASP
75
63.34
125.99
11
A
VAL
83
61.33
-81.32
11
A
ARG
86
-126.44
-154.21
12
A
ILE
11
50.05
119.19
12
A
ILE
12
-85.51
49.58
12
A
ARG
15
-78.17
-163.95
12
A
PRO
17
-73.59
-165.87
12
A
TYR
19
-94.79
-68.23
12
A
ASP
20
-61.17
81.46
12
A
PRO
25
-38.81
164.54
12
A
SER
40
-97.87
36.32
12
A
VAL
83
63.15
-79.76
12
A
ARG
86
-127.70
-154.21
13
A
SER
4
-156.76
54.48
13
A
PRO
5
-55.47
-76.99
13
A
SER
10
-159.46
42.85
13
A
ILE
11
51.54
117.45
13
A
ARG
13
63.35
-175.56
13
A
PRO
17
-77.26
-167.42
13
A
MET
18
-172.61
18.21
13
A
TYR
19
36.23
48.39
13
A
ASP
21
67.31
-99.41
13
A
THR
23
45.34
83.97
13
A
PRO
25
-53.92
-170.58
13
A
SER
37
-107.22
-169.52
13
A
ARG
39
172.20
120.06
13
A
ALA
41
-54.12
179.84
13
A
THR
72
-149.95
22.56
13
A
SER
73
-143.47
33.03
13
A
ARG
86
-121.42
-83.88
13
A
SER
88
-147.17
20.46
14
A
SER
4
-147.82
59.76
14
A
LYS
6
-108.05
61.15
14
A
ARG
9
-49.34
167.29
14
A
SER
10
-168.77
80.49
14
A
ILE
11
48.36
104.44
14
A
ARG
13
68.02
162.51
14
A
ASP
14
-49.05
162.15
14
A
MET
18
-134.54
-34.47
14
A
ASP
21
44.62
-94.39
14
A
THR
23
-159.35
78.28
14
A
PRO
25
-42.77
165.69
14
A
ARG
35
88.84
-177.80
14
A
LYS
36
-153.22
-88.24
14
A
SER
37
-155.12
-159.62
14
A
ALA
41
-60.50
99.33
14
A
ALA
64
-52.83
-72.17
14
A
THR
84
-91.96
43.10
14
A
ARG
86
-131.64
-150.52
15
A
SER
2
59.83
163.45
15
A
SER
4
-162.83
77.47
15
A
ILE
11
47.29
99.74
15
A
ARG
13
60.06
78.96
15
A
ASP
14
-124.97
-162.59
15
A
ARG
15
-37.17
156.24
15
A
TYR
19
-67.26
-70.55
15
A
ASP
20
-59.27
89.98
15
A
LEU
24
-41.87
160.41
15
A
PRO
25
-40.33
162.51
15
A
ARG
35
86.69
-178.22
15
A
LYS
36
-165.49
-82.67
15
A
PRO
51
-96.39
30.27
15
A
GLN
52
-157.02
-44.26
15
A
THR
82
-164.29
93.87
15
A
ARG
86
-140.55
-154.25
15
A
SER
90
63.23
122.96
16
A
SER
2
59.46
94.32
16
A
SER
4
-162.35
-66.27
16
A
ILE
12
-93.86
50.03
16
A
ARG
13
72.76
130.27
16
A
ASP
14
-58.26
107.30
16
A
ASP
20
-156.70
85.93
16
A
ASP
21
34.95
-88.98
16
A
THR
23
-159.25
-83.48
16
A
LEU
24
59.42
163.30
16
A
PRO
25
-48.38
-179.54
16
A
LYS
36
-112.08
-76.76
16
A
SER
37
67.54
-65.13
16
A
ASP
71
-74.64
-74.62
16
A
LEU
74
-138.72
-36.60
16
A
ASP
75
68.97
105.08
16
A
VAL
83
67.62
-61.02
16
A
ARG
86
-104.55
-158.86
17
A
ALA
3
-175.04
60.98
17
A
GLN
7
43.42
80.43
17
A
ILE
11
48.10
101.83
17
A
ARG
13
53.06
70.86
17
A
ASP
20
-61.55
85.87
17
A
THR
23
-92.80
43.99
17
A
PRO
25
-45.34
173.52
17
A
LYS
36
-90.63
-78.10
17
A
SER
37
67.99
-67.09
17
A
ARG
39
-92.98
-62.02
17
A
SER
40
-99.15
41.02
17
A
LEU
74
-154.58
65.48
17
A
ASP
75
61.07
-173.87
17
A
PRO
76
-75.73
-157.68
17
A
ASP
78
-145.59
-5.17
18
A
SER
4
-163.61
58.14
18
A
PRO
5
-93.38
-65.42
18
A
GLN
7
-108.59
-67.60
18
A
SER
10
-161.06
44.65
18
A
ARG
13
61.90
156.19
18
A
ASP
14
-56.71
99.42
18
A
PRO
17
-68.72
-164.96
18
A
TYR
19
-112.98
56.29
18
A
ASP
20
-178.24
67.61
18
A
LEU
24
-48.46
162.18
18
A
PRO
25
-38.37
161.50
18
A
SER
37
-143.96
20.03
18
A
GLN
52
-154.34
-43.72
18
A
SER
58
-145.96
-86.02
18
A
LYS
59
166.25
-41.33
18
A
THR
72
52.69
18.42
18
A
ASP
80
-63.73
-175.22
18
A
SER
90
-156.46
66.80
19
A
SER
4
60.50
73.65
19
A
SER
10
-166.18
45.43
19
A
ILE
12
45.08
27.67
19
A
PRO
17
-72.42
-153.84
19
A
ASP
20
-175.33
67.00
19
A
PRO
25
-41.56
166.56
19
A
ARG
39
-178.53
-39.94
19
A
SER
40
-98.51
36.29
19
A
THR
84
-117.54
57.46
20
A
ALA
3
-143.31
31.42
20
A
SER
4
-163.15
49.62
20
A
ARG
9
-105.94
52.99
20
A
SER
10
49.51
72.21
20
A
ARG
13
58.46
177.84
20
A
MET
18
-160.90
113.50
20
A
TYR
19
-92.92
52.68
20
A
ASP
20
-176.37
64.40
20
A
PRO
25
-47.07
177.49
20
A
ARG
39
-124.71
-62.90
20
A
SER
58
-151.64
-4.74
20
A
LYS
59
77.14
-50.84
20
A
LEU
62
-62.77
-72.73
20
A
THR
72
-140.83
32.83
20
A
LEU
74
-154.58
72.36
20
A
ASP
75
60.31
-152.93
20
A
PRO
76
-68.19
-152.77
20
A
ARG
86
-109.81
-149.39
20
A
SER
88
58.99
17.94
20
A
SER
90
59.87
99.95
21
A
SER
4
-152.75
53.54
21
A
GLN
7
-124.06
-55.39
21
A
SER
10
48.79
74.88
21
A
ILE
12
-94.28
41.09
21
A
MET
18
-141.68
-36.20
21
A
TYR
19
81.17
-56.86
21
A
ASP
20
-38.36
99.00
21
A
ASP
21
-1.30
-65.42
21
A
THR
23
-161.19
21.19
21
A
LEU
24
-44.15
166.85
21
A
PRO
25
-39.58
166.88
21
A
ALA
41
-52.44
170.11
21
A
PHE
66
-39.67
-38.80
21
A
ASP
71
39.67
-161.33
21
A
SER
73
-141.10
17.47
21
A
LEU
74
-154.53
-39.58
21
A
ASP
75
71.97
103.59
21
A
PHE
79
-109.51
64.40
21
A
ARG
86
-135.70
-155.31
22
A
SER
4
-163.59
-64.23
22
A
LYS
6
48.58
93.63
22
A
ILE
11
47.67
103.31
22
A
ILE
12
-91.06
54.52
22
A
ASP
14
-118.70
52.32
22
A
PRO
17
-72.02
-164.86
22
A
MET
18
-168.91
106.01
22
A
TYR
19
-68.66
66.37
22
A
ASP
20
179.05
74.75
22
A
THR
23
-94.80
46.43
22
A
PRO
25
-49.35
-179.42
22
A
ARG
35
-178.02
-177.35
22
A
LYS
36
-175.97
33.32
22
A
SER
37
59.88
-162.15
22
A
PRO
51
-37.61
-27.86
22
A
VAL
83
-95.50
-64.12
22
A
ARG
86
-111.65
-162.19
22
A
SER
90
58.39
90.03
23
A
SER
2
59.22
-173.23
23
A
ARG
8
39.71
-164.33
23
A
SER
10
-169.53
82.67
23
A
ILE
11
49.79
111.52
23
A
ARG
13
71.31
157.09
23
A
MET
18
-170.99
103.73
23
A
TYR
19
-69.50
64.64
23
A
ASP
20
-178.50
79.77
23
A
LEU
24
-46.38
161.29
23
A
PRO
25
-35.71
159.00
23
A
ARG
35
91.34
174.93
23
A
LYS
36
178.54
70.19
23
A
SER
37
53.49
-161.43
23
A
ALA
41
-54.72
81.53
23
A
THR
72
-144.99
26.62
23
A
ASP
75
60.53
95.75
23
A
VAL
83
-65.57
-71.76
23
A
ARG
86
-147.29
-155.49
23
A
SER
90
57.14
107.89
24
A
SER
2
60.89
144.22
24
A
SER
4
57.16
77.28
24
A
LYS
6
-91.61
45.34
24
A
GLN
7
-120.35
-61.49
24
A
SER
10
-167.01
76.33
24
A
ILE
11
48.00
103.33
24
A
PRO
17
-71.67
-166.75
24
A
MET
18
-141.28
-26.57
24
A
TYR
19
84.17
-74.44
24
A
ASP
20
-61.54
87.44
24
A
LEU
24
-51.65
-177.53
24
A
PRO
25
-41.29
157.27
24
A
TRP
28
-47.80
150.45
24
A
SER
37
56.77
-177.60
24
A
ARG
39
169.16
133.22
24
A
GLU
67
-61.24
-70.10
24
A
ARG
86
-136.66
-154.97
25
A
SER
2
60.01
62.18
25
A
SER
4
-161.69
-66.05
25
A
PRO
5
-52.08
-70.64
25
A
SER
10
59.65
77.03
25
A
ILE
11
48.27
106.44
25
A
ARG
13
72.08
170.12
25
A
MET
18
-160.16
102.18
25
A
ASP
20
179.38
82.15
25
A
PRO
25
-48.59
178.37
25
A
SER
37
-147.68
43.81
25
A
ARG
39
-178.60
109.78
25
A
ALA
41
-52.60
-175.28
25
A
ASP
71
32.50
107.51
25
A
THR
72
-148.72
31.06
25
A
SER
73
-179.43
49.78
25
A
LEU
74
-154.50
-36.54
25
A
ASP
75
51.58
109.79
25
A
VAL
83
63.49
-78.78
25
A
ARG
86
-125.25
-154.25
26
A
SER
2
-92.92
57.75
26
A
SER
4
-163.67
62.81
26
A
PRO
5
-93.78
-80.38
26
A
LYS
6
39.24
77.62
26
A
SER
10
-158.38
71.06
26
A
ARG
13
61.49
172.10
26
A
PRO
17
-71.66
-164.49
26
A
TYR
19
-70.81
-75.24
26
A
ASP
20
-61.31
83.93
26
A
PRO
22
-93.83
30.77
26
A
PRO
25
-47.20
178.15
26
A
LYS
31
178.57
162.37
26
A
ARG
35
90.02
-178.63
26
A
LYS
36
-174.58
36.45
26
A
SER
37
62.19
-165.98
26
A
ARG
39
172.66
-77.72
26
A
SER
40
-99.25
38.41
26
A
ALA
41
-54.97
80.86
26
A
PHE
66
-35.29
-39.84
26
A
ASP
71
39.44
-159.38
26
A
SER
73
-150.16
27.04
26
A
LEU
74
-147.95
-41.96
26
A
ASP
75
70.14
86.24
26
A
PHE
79
-108.11
79.45
26
A
PHE
81
49.33
-88.92
26
A
THR
82
58.28
161.97
26
A
VAL
83
-132.53
-51.47
26
A
THR
84
-93.17
39.46
26
A
ARG
86
63.01
110.18
26
A
SER
90
58.62
173.24
27
A
ALA
3
-172.64
42.25
27
A
SER
4
-150.61
73.94
27
A
ILE
12
-91.67
50.18
27
A
MET
18
-136.18
-36.43
27
A
ASP
20
-175.75
82.55
27
A
PRO
25
-43.51
170.27
27
A
LYS
36
-105.14
65.63
27
A
GLU
67
-60.90
-70.00
27
A
LEU
74
-133.51
-41.60
27
A
ASP
75
61.96
102.54
27
A
ARG
86
-109.28
-154.86
27
A
SER
90
55.14
96.68
28
A
SER
4
-163.61
-63.54
28
A
GLN
7
-125.52
-65.29
28
A
ARG
9
58.69
120.55
28
A
SER
10
73.38
60.41
28
A
ARG
13
63.21
157.98
28
A
TYR
19
-97.38
47.44
28
A
ASP
20
179.40
71.85
28
A
THR
23
-92.31
42.83
28
A
PRO
25
-46.90
174.86
28
A
LEU
74
-137.64
-39.04
28
A
ASP
75
66.75
93.67
28
A
THR
84
-107.87
47.23
28
A
ARG
86
179.14
154.41
METHYL-CPG-BINDING PROTEIN 2
The solution structure of the domain from MeCP2 that binds to methylated DNA
1
N
N
A
VAL
60
A
VAL
60
HELX_P
A
GLY
70
A
GLY
70
1
HEL
11
A
ASP
75
A
ASP
75
HELX_P
A
ASP
78
A
ASP
78
5
HEL
4
METHYL-CPG-BINDING PROTEIN
METHYL-CPG-BINDING PROTEIN, SOLUTION STRUCTURE, METHYLATED DNA, METHYL CYTOSINE, MBD
A
GLY
16
A
GLY
16
2
A
PRO
17
A
PRO
17
1.16
A
SER
4
A
SER
4
3
A
PRO
5
A
PRO
5
-1.71
A
GLY
16
A
GLY
16
3
A
PRO
17
A
PRO
17
2.33
A
GLY
16
A
GLY
16
4
A
PRO
17
A
PRO
17
3.78
A
GLY
16
A
GLY
16
5
A
PRO
17
A
PRO
17
-3.22
A
ASP
21
A
ASP
21
6
A
PRO
22
A
PRO
22
-8.24
A
SER
4
A
SER
4
7
A
PRO
5
A
PRO
5
-1.03
A
GLY
16
A
GLY
16
7
A
PRO
17
A
PRO
17
3.30
A
ASP
21
A
ASP
21
7
A
PRO
22
A
PRO
22
-10.60
A
ASP
21
A
ASP
21
8
A
PRO
22
A
PRO
22
-5.42
A
ASP
75
A
ASP
75
9
A
PRO
76
A
PRO
76
17.86
A
ASP
21
A
ASP
21
10
A
PRO
22
A
PRO
22
-6.48
A
ASN
50
A
ASN
50
11
A
PRO
51
A
PRO
51
-26.70
A
ASP
21
A
ASP
21
13
A
PRO
22
A
PRO
22
-13.97
A
ASP
21
A
ASP
21
14
A
PRO
22
A
PRO
22
-7.00
A
GLY
16
A
GLY
16
15
A
PRO
17
A
PRO
17
-1.88
A
ASN
50
A
ASN
50
15
A
PRO
51
A
PRO
51
-25.42
A
GLY
16
A
GLY
16
16
A
PRO
17
A
PRO
17
2.54
A
ASP
21
A
ASP
21
16
A
PRO
22
A
PRO
22
-2.97
A
GLY
16
A
GLY
16
17
A
PRO
17
A
PRO
17
-3.18
A
ASP
75
A
ASP
75
17
A
PRO
76
A
PRO
76
17.71
A
SER
4
A
SER
4
18
A
PRO
5
A
PRO
5
2.08
A
ASN
50
A
ASN
50
18
A
PRO
51
A
PRO
51
-24.95
A
GLY
16
A
GLY
16
19
A
PRO
17
A
PRO
17
-2.28
A
ASN
50
A
ASN
50
19
A
PRO
51
A
PRO
51
-23.71
A
GLY
16
A
GLY
16
20
A
PRO
17
A
PRO
17
2.74
A
ASP
75
A
ASP
75
20
A
PRO
76
A
PRO
76
4.13
A
GLY
16
A
GLY
16
21
A
PRO
17
A
PRO
17
-4.14
A
ASP
21
A
ASP
21
21
A
PRO
22
A
PRO
22
-2.81
A
SER
4
A
SER
4
22
A
PRO
5
A
PRO
5
-1.51
A
GLY
16
A
GLY
16
24
A
PRO
17
A
PRO
17
-2.29
A
GLY
16
A
GLY
16
25
A
PRO
17
A
PRO
17
2.78
A
SER
4
A
SER
4
26
A
PRO
5
A
PRO
5
2.41
A
GLY
16
A
GLY
16
27
A
PRO
17
A
PRO
17
4.53
A
SER
4
A
SER
4
28
A
PRO
5
A
PRO
5
-2.23
A
GLY
16
A
GLY
16
28
A
PRO
17
A
PRO
17
3.26
MEC2_HUMAN
UNP
1
P51608
77
168
1QK9
1
92
P51608
A
1
1
92
1
PRO
conflict
GLY
89
1QK9
A
P51608
UNP
165
89
1
ARG
conflict
GLY
91
1QK9
A
P51608
UNP
167
91
1
ARG
conflict
CYS
92
1QK9
A
P51608
UNP
168
92
3
anti-parallel
anti-parallel
A
THR
29
A
THR
29
A
LEU
32
A
LEU
32
A
VAL
46
A
VAL
46
A
ASN
50
A
ASN
50
A
LYS
54
A
LYS
54
A
ARG
57
A
ARG
57
1
P 1