HEADER DNA 17-SEP-03 1QZL TITLE GCATGCT + COBALT COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*CP*AP*TP*GP*CP*T)-3'; COMPND 3 CHAIN: X; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS DNA QUADRUPLEX, DNA EXPDTA X-RAY DIFFRACTION AUTHOR C.J.CARDIN,Y.GAN,J.H.THORPE,S.C.M.TEIXEIRA,B.C.GALE,M.I.A.MORAES REVDAT 3 14-FEB-24 1QZL 1 REMARK LINK REVDAT 2 24-FEB-09 1QZL 1 VERSN REVDAT 1 21-OCT-03 1QZL 0 JRNL AUTH C.J.CARDIN,Y.GAN,J.H.THORPE,S.C.M.TEIXEIRA,B.C.GALE, JRNL AUTH 2 M.I.A.MORAES JRNL TITL METAL ION DISTRIBUTION AND STABILISATION OF THE DNA JRNL TITL 2 QUADRUPLEX STRUCTURE FORMED BY D(GCATGCT) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 489 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.335 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 23 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 27 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 2 REMARK 3 BIN FREE R VALUE : 0.2390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 140 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.08000 REMARK 3 B22 (A**2) : 1.08000 REMARK 3 B33 (A**2) : -1.62000 REMARK 3 B12 (A**2) : 0.54000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.047 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.525 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.852 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.886 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.819 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 156 ; 0.021 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 69 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 239 ; 2.909 ; 3.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 173 ; 1.421 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 21 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 73 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 11 ; 0.124 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 59 ; 0.227 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 33 ; 0.115 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 2 ; 0.210 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.112 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 14 ; 0.298 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.125 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1QZL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-03. REMARK 100 THE DEPOSITION ID IS D_1000020262. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8416 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 522 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 30.606 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.15730 REMARK 200 R SYM (I) : 0.15070 REMARK 200 FOR THE DATA SET : 4.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.28800 REMARK 200 R SYM FOR SHELL (I) : 0.28800 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: XTALVIEW REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CACODYLATE, COBALT DICHLORIDE, REMARK 280 POTASSIUM CHLORIDE, MPD, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.21200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.60600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.21200 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.60600 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.21200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 30.60600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 61.21200 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 30.60600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 30.60600 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 30.60600 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH X 102 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG X 1 O3' DG X 1 C3' -0.039 REMARK 500 DG X 1 C5 DG X 1 N7 -0.060 REMARK 500 DC X 2 N1 DC X 2 C6 0.040 REMARK 500 DT X 4 O3' DT X 4 C3' -0.046 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG X 1 C6 - C5 - N7 ANGL. DEV. = -4.8 DEGREES REMARK 500 DG X 1 N1 - C6 - O6 ANGL. DEV. = 3.7 DEGREES REMARK 500 DG X 1 C5 - C6 - O6 ANGL. DEV. = -4.2 DEGREES REMARK 500 DG X 1 C3' - O3' - P ANGL. DEV. = 8.7 DEGREES REMARK 500 DG X 5 O4' - C1' - C2' ANGL. DEV. = 4.3 DEGREES REMARK 500 DG X 5 N1 - C6 - O6 ANGL. DEV. = 4.2 DEGREES REMARK 500 DG X 5 C5 - C6 - O6 ANGL. DEV. = -4.0 DEGREES REMARK 500 DC X 6 O5' - P - OP1 ANGL. DEV. = -7.3 DEGREES REMARK 500 DC X 6 O4' - C4' - C3' ANGL. DEV. = 3.7 DEGREES REMARK 500 DC X 6 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 DC X 6 N1 - C2 - O2 ANGL. DEV. = -3.8 DEGREES REMARK 500 DC X 6 C3' - O3' - P ANGL. DEV. = 13.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO X 101 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG X 1 N7 REMARK 620 2 DG X 5 N7 176.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO X 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QYK RELATED DB: PDB REMARK 900 GCATGCT + BARIUM REMARK 900 RELATED ID: 1QYL RELATED DB: PDB REMARK 900 GCATGCT + VANADIUM REMARK 900 RELATED ID: 1R2O RELATED DB: PDB REMARK 900 GCATGCT + NI2+ DBREF 1QZL X 1 7 PDB 1QZL 1QZL 1 7 SEQRES 1 X 7 DG DC DA DT DG DC DT HET CO X 101 1 HETNAM CO COBALT (II) ION FORMUL 2 CO CO 2+ FORMUL 3 HOH *(H2 O) LINK N7 DG X 1 CO CO X 101 1555 1555 2.51 LINK N7 DG X 5 CO CO X 101 12555 1555 2.33 SITE 1 AC1 2 DG X 1 DG X 5 CRYST1 24.789 24.789 91.818 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.040340 0.023290 0.000000 0.00000 SCALE2 0.000000 0.046581 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010891 0.00000 ATOM 1 O5' DG X 1 6.964 4.659 9.137 1.00 39.26 O ATOM 2 C5' DG X 1 6.616 5.546 10.179 1.00 37.77 C ATOM 3 C4' DG X 1 6.812 4.876 11.528 1.00 39.88 C ATOM 4 O4' DG X 1 5.553 4.352 12.013 1.00 41.11 O ATOM 5 C3' DG X 1 7.721 3.674 11.573 1.00 41.76 C ATOM 6 O3' DG X 1 8.217 3.728 12.860 1.00 49.08 O ATOM 7 C2' DG X 1 6.804 2.499 11.303 1.00 39.30 C ATOM 8 C1' DG X 1 5.485 2.947 11.905 1.00 39.89 C ATOM 9 N9 DG X 1 4.275 2.614 11.121 1.00 37.58 N ATOM 10 C8 DG X 1 4.215 2.561 9.774 1.00 34.80 C ATOM 11 N7 DG X 1 3.046 2.271 9.338 1.00 34.95 N ATOM 12 C5 DG X 1 2.292 2.122 10.421 1.00 23.91 C ATOM 13 C6 DG X 1 0.936 1.807 10.427 1.00 32.67 C ATOM 14 O6 DG X 1 0.252 1.591 9.394 1.00 35.06 O ATOM 15 N1 DG X 1 0.414 1.736 11.743 1.00 34.81 N ATOM 16 C2 DG X 1 1.218 1.935 12.892 1.00 35.52 C ATOM 17 N2 DG X 1 0.597 1.833 14.087 1.00 24.70 N ATOM 18 N3 DG X 1 2.539 2.270 12.867 1.00 35.81 N ATOM 19 C4 DG X 1 2.993 2.344 11.565 1.00 33.17 C ATOM 20 P DC X 2 9.044 2.604 13.661 1.00 52.35 P ATOM 21 OP1 DC X 2 9.470 3.364 14.883 1.00 49.89 O ATOM 22 OP2 DC X 2 9.954 1.840 12.760 1.00 40.39 O ATOM 23 O5' DC X 2 7.902 1.540 14.041 1.00 45.20 O ATOM 24 C5' DC X 2 7.484 1.379 15.356 1.00 42.63 C ATOM 25 C4' DC X 2 6.416 0.318 15.401 1.00 41.97 C ATOM 26 O4' DC X 2 5.446 0.446 14.319 1.00 40.14 O ATOM 27 C3' DC X 2 6.953 -1.078 15.279 1.00 39.94 C ATOM 28 O3' DC X 2 6.968 -1.591 16.600 1.00 46.47 O ATOM 29 C2' DC X 2 5.887 -1.772 14.419 1.00 39.73 C ATOM 30 C1' DC X 2 4.756 -0.751 14.231 1.00 31.78 C ATOM 31 N1 DC X 2 4.138 -0.864 12.932 1.00 30.64 N ATOM 32 C2 DC X 2 2.767 -1.179 12.795 1.00 30.71 C ATOM 33 O2 DC X 2 2.067 -1.314 13.781 1.00 29.81 O ATOM 34 N3 DC X 2 2.238 -1.320 11.530 1.00 30.75 N ATOM 35 C4 DC X 2 3.034 -1.135 10.433 1.00 26.09 C ATOM 36 N4 DC X 2 2.493 -1.298 9.257 1.00 14.47 N ATOM 37 C5 DC X 2 4.416 -0.810 10.539 1.00 24.33 C ATOM 38 C6 DC X 2 4.936 -0.702 11.784 1.00 25.29 C ATOM 39 P DA X 3 8.273 -2.218 17.300 1.00 45.53 P ATOM 40 OP1 DA X 3 9.446 -1.357 16.876 1.00 41.17 O ATOM 41 OP2 DA X 3 8.162 -3.708 17.054 1.00 34.53 O ATOM 42 O5' DA X 3 8.031 -1.885 18.862 1.00 42.55 O ATOM 43 C5' DA X 3 7.907 -0.520 19.348 1.00 35.43 C ATOM 44 C4' DA X 3 6.865 -0.453 20.470 1.00 33.33 C ATOM 45 O4' DA X 3 5.555 -0.902 20.003 1.00 33.06 O ATOM 46 C3' DA X 3 7.213 -1.324 21.665 1.00 29.36 C ATOM 47 O3' DA X 3 6.977 -0.690 22.919 1.00 29.55 O ATOM 48 C2' DA X 3 6.361 -2.539 21.352 1.00 29.78 C ATOM 49 C1' DA X 3 5.102 -1.925 20.842 1.00 31.01 C ATOM 50 N9 DA X 3 4.324 -2.836 20.036 1.00 37.17 N ATOM 51 C8 DA X 3 4.399 -2.948 18.664 1.00 38.42 C ATOM 52 N7 DA X 3 3.584 -3.875 18.173 1.00 40.99 N ATOM 53 C5 DA X 3 2.961 -4.407 19.285 1.00 33.24 C ATOM 54 C6 DA X 3 1.978 -5.391 19.382 1.00 35.27 C ATOM 55 N6 DA X 3 1.511 -5.992 18.279 1.00 33.42 N ATOM 56 N1 DA X 3 1.520 -5.714 20.637 1.00 35.56 N ATOM 57 C2 DA X 3 2.047 -5.041 21.695 1.00 32.58 C ATOM 58 N3 DA X 3 2.962 -4.029 21.708 1.00 32.60 N ATOM 59 C4 DA X 3 3.390 -3.775 20.455 1.00 34.94 C ATOM 60 P DT X 4 8.047 0.428 23.372 1.00 40.28 P ATOM 61 OP1 DT X 4 7.490 1.787 23.327 1.00 37.55 O ATOM 62 OP2 DT X 4 9.267 0.170 22.542 1.00 40.13 O ATOM 63 O5' DT X 4 8.379 0.062 24.912 1.00 41.37 O ATOM 64 C5' DT X 4 8.912 -1.261 25.239 1.00 41.13 C ATOM 65 C4' DT X 4 8.332 -1.824 26.522 1.00 39.94 C ATOM 66 O4' DT X 4 8.448 -0.801 27.518 1.00 46.09 O ATOM 67 C3' DT X 4 6.846 -2.115 26.497 1.00 39.13 C ATOM 68 O3' DT X 4 6.593 -3.213 27.282 1.00 30.05 O ATOM 69 C2' DT X 4 6.152 -0.846 27.012 1.00 37.53 C ATOM 70 C1' DT X 4 7.185 -0.384 28.012 1.00 41.19 C ATOM 71 N1 DT X 4 7.239 1.088 28.274 1.00 40.86 N ATOM 72 C2 DT X 4 7.100 1.528 29.600 1.00 36.65 C ATOM 73 O2 DT X 4 6.905 0.782 30.563 1.00 29.82 O ATOM 74 N3 DT X 4 7.183 2.898 29.754 1.00 33.94 N ATOM 75 C4 DT X 4 7.403 3.814 28.735 1.00 38.67 C ATOM 76 O4 DT X 4 7.451 4.995 28.984 1.00 45.15 O ATOM 77 C5 DT X 4 7.584 3.296 27.378 1.00 42.44 C ATOM 78 C7 DT X 4 7.836 4.220 26.193 1.00 39.82 C ATOM 79 C6 DT X 4 7.504 1.955 27.227 1.00 41.00 C ATOM 80 P DG X 5 5.533 -4.224 26.720 1.00 37.15 P ATOM 81 OP1 DG X 5 5.793 -5.572 27.312 1.00 43.06 O ATOM 82 OP2 DG X 5 5.520 -4.118 25.235 1.00 44.41 O ATOM 83 O5' DG X 5 4.130 -3.660 27.250 1.00 39.60 O ATOM 84 C5' DG X 5 3.677 -3.907 28.624 1.00 43.33 C ATOM 85 C4' DG X 5 2.545 -2.987 29.014 1.00 43.17 C ATOM 86 O4' DG X 5 2.989 -1.601 29.036 1.00 38.91 O ATOM 87 C3' DG X 5 1.423 -3.036 27.978 1.00 45.26 C ATOM 88 O3' DG X 5 0.563 -4.222 28.158 1.00 43.08 O ATOM 89 C2' DG X 5 0.756 -1.649 28.083 1.00 41.84 C ATOM 90 C1' DG X 5 1.865 -0.806 28.717 1.00 40.93 C ATOM 91 N9 DG X 5 2.397 0.224 27.876 1.00 39.96 N ATOM 92 C8 DG X 5 2.453 0.236 26.520 1.00 39.16 C ATOM 93 N7 DG X 5 2.999 1.330 26.076 1.00 42.91 N ATOM 94 C5 DG X 5 3.323 2.058 27.198 1.00 35.13 C ATOM 95 C6 DG X 5 3.959 3.305 27.285 1.00 38.71 C ATOM 96 O6 DG X 5 4.335 3.983 26.298 1.00 40.91 O ATOM 97 N1 DG X 5 4.148 3.696 28.638 1.00 39.38 N ATOM 98 C2 DG X 5 3.717 2.939 29.728 1.00 35.28 C ATOM 99 N2 DG X 5 3.916 3.424 30.969 1.00 27.07 N ATOM 100 N3 DG X 5 3.124 1.750 29.628 1.00 34.62 N ATOM 101 C4 DG X 5 2.973 1.387 28.327 1.00 37.81 C ATOM 102 P DC X 6 -0.018 -4.860 26.815 1.00 39.07 P ATOM 103 OP1 DC X 6 -0.339 -3.671 25.985 1.00 44.82 O ATOM 104 OP2 DC X 6 -0.973 -5.956 27.032 1.00 38.21 O ATOM 105 O5' DC X 6 1.252 -5.368 26.011 1.00 45.96 O ATOM 106 C5' DC X 6 2.033 -6.449 26.405 1.00 53.54 C ATOM 107 C4' DC X 6 1.708 -7.712 25.605 1.00 53.59 C ATOM 108 O4' DC X 6 1.920 -7.418 24.207 1.00 53.89 O ATOM 109 C3' DC X 6 2.662 -8.830 26.048 1.00 54.70 C ATOM 110 O3' DC X 6 2.046 -9.972 26.822 1.00 51.23 O ATOM 111 C2' DC X 6 3.492 -9.092 24.782 1.00 53.32 C ATOM 112 C1' DC X 6 2.731 -8.437 23.641 1.00 52.52 C ATOM 113 N1 DC X 6 3.631 -7.915 22.475 1.00 44.96 N ATOM 114 C2 DC X 6 3.427 -8.376 21.193 1.00 37.17 C ATOM 115 O2 DC X 6 2.535 -9.193 21.074 1.00 39.81 O ATOM 116 N3 DC X 6 4.199 -7.943 20.166 1.00 39.63 N ATOM 117 C4 DC X 6 5.183 -7.039 20.379 1.00 43.34 C ATOM 118 N4 DC X 6 5.961 -6.574 19.374 1.00 33.20 N ATOM 119 C5 DC X 6 5.418 -6.542 21.698 1.00 44.42 C ATOM 120 C6 DC X 6 4.632 -7.014 22.694 1.00 47.12 C ATOM 121 P DT X 7 1.218 -11.282 26.369 0.50 46.80 P ATOM 122 OP1 DT X 7 -0.181 -11.008 25.956 0.50 40.70 O ATOM 123 OP2 DT X 7 1.510 -12.059 27.589 0.50 43.56 O ATOM 124 O5' DT X 7 1.927 -12.026 25.139 0.50 50.07 O ATOM 125 C5' DT X 7 1.501 -11.749 23.779 0.50 53.63 C ATOM 126 C4' DT X 7 0.985 -12.957 23.010 0.50 53.70 C ATOM 127 O4' DT X 7 1.518 -12.862 21.671 0.50 54.15 O ATOM 128 C3' DT X 7 1.433 -14.348 23.460 0.50 54.28 C ATOM 129 O3' DT X 7 0.661 -15.407 22.870 0.50 52.46 O ATOM 130 C2' DT X 7 2.865 -14.351 22.945 0.50 54.62 C ATOM 131 C1' DT X 7 2.737 -13.595 21.616 0.50 53.18 C ATOM 132 N1 DT X 7 3.852 -12.624 21.276 0.50 48.65 N ATOM 133 C2 DT X 7 4.099 -12.324 19.931 0.50 47.31 C ATOM 134 O2 DT X 7 3.479 -12.789 18.980 0.50 46.84 O ATOM 135 N3 DT X 7 5.132 -11.439 19.726 0.50 44.60 N ATOM 136 C4 DT X 7 5.911 -10.838 20.684 0.50 40.24 C ATOM 137 O4 DT X 7 6.786 -10.051 20.397 0.50 35.87 O ATOM 138 C5 DT X 7 5.610 -11.188 22.046 0.50 42.64 C ATOM 139 C7 DT X 7 6.396 -10.578 23.172 0.50 43.26 C ATOM 140 C6 DT X 7 4.613 -12.049 22.282 0.50 43.90 C TER 141 DT X 7 HETATM 142 CO CO X 101 2.876 2.025 6.844 1.00 45.65 CO HETATM 143 O HOH X 102 3.024 1.737 15.291 0.50 11.99 O CONECT 11 142 CONECT 142 11 MASTER 360 0 1 0 0 0 1 6 142 1 2 1 END