0.023273
0.000000
0.000000
0.000000
0.021623
0.000000
0.000000
0.000000
0.006314
0.00000
0.00000
0.00000
Schiering, N.
Knapp, S.
Marconi, M.
Flocco, M.M.
Cui, J.
Perego, R.
Rusconi, L.
Cristiani, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
42.969
46.247
158.379
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C27 H21 N3 O5
467.473
K-252A
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
O
N
184
N
C
N
185
N
O
N
186
N
C
N
187
R
C
N
188
N
O
N
189
S
C
N
190
N
O
N
191
N
C
Y
192
N
N
Y
193
N
C
Y
194
N
C
Y
195
N
N
N
196
R
C
N
197
N
C
Y
198
N
C
Y
199
N
C
Y
200
N
C
Y
201
N
C
Y
202
N
C
Y
203
N
C
Y
204
N
C
Y
205
N
C
N
206
N
C
N
207
N
O
Y
208
N
C
N
209
N
C
N
210
N
N
Y
211
N
C
Y
212
N
C
Y
213
N
C
Y
214
N
C
Y
215
N
C
Y
216
N
C
Y
217
N
C
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
N
N
240
S
C
N
241
N
C
N
242
N
O
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
N
N
262
S
C
N
263
N
C
N
264
N
O
N
265
N
C
N
266
N
C
N
267
N
C
N
268
N
C
N
269
N
N
N
270
N
O
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
N
N
287
S
C
N
288
N
C
N
289
N
O
N
290
N
C
N
291
N
C
N
292
N
S
N
293
N
C
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
N
N
330
S
C
N
331
N
C
N
332
N
O
N
333
N
C
N
334
N
C
N
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
N
C
N
351
N
O
N
352
N
O
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
N
N
361
S
C
N
362
N
C
N
363
N
O
N
364
R
C
N
365
N
O
N
366
N
C
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
N
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
N
N
405
S
C
N
406
N
C
N
407
N
O
N
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
N
415
N
O
N
416
N
O
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
N
N
429
S
C
N
430
N
C
N
431
N
O
N
432
N
C
N
433
N
C
N
434
N
C
N
435
N
O
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
Y
191
N
sing
Y
192
N
sing
Y
193
N
doub
Y
194
N
sing
Y
195
N
sing
Y
196
N
sing
N
197
N
sing
Y
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
Y
203
N
doub
Y
204
N
sing
Y
205
N
sing
N
206
N
sing
Y
207
N
doub
N
208
N
sing
Y
209
N
sing
N
210
N
sing
Y
211
N
doub
N
212
N
sing
Y
213
N
sing
Y
214
N
doub
N
215
N
sing
Y
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
Y
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
Y
225
N
sing
Y
226
N
doub
Y
227
N
sing
Y
228
N
sing
Y
229
N
doub
N
230
N
sing
Y
231
N
doub
N
232
N
sing
Y
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
doub
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
Y
311
N
doub
Y
312
N
sing
Y
313
N
sing
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
doub
N
318
N
sing
Y
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
Y
380
N
doub
Y
381
N
sing
Y
382
N
sing
N
383
N
sing
Y
384
N
doub
Y
385
N
sing
Y
386
N
sing
N
387
N
sing
Y
388
N
sing
Y
389
N
doub
N
390
N
sing
Y
391
N
doub
N
392
N
sing
Y
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
doub
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
Y
408
N
doub
Y
409
N
sing
Y
410
N
sing
N
411
N
sing
Y
412
N
doub
N
413
N
sing
Y
414
N
doub
N
415
N
sing
Y
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
doub
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
100
12654
12659
10.1073/pnas.1734128100
14559966
Crystal structure of the tyrosine kinase domain of the hepatocyte growth factor receptor c-Met and its complex with the microbial alkaloid K-252a
2003
10.2210/pdb1r0p/pdb
pdb_00001r0p
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2002-11-16
MARRESEARCH
diamond cystal
SINGLE WAVELENGTH
M
x-ray
1
0.933
1.0
ID14-2
ESRF
0.933
SYNCHROTRON
ESRF BEAMLINE ID14-2
35306.898
Hepatocyte growth factor receptor
2.7.1.112
tyrosine kinase domain
Y1194F, Y1234F, Y1235D, V1272L
1
man
polymer
467.473
K-252A
1
syn
non-polymer
18.015
water
201
nat
water
Met proto-oncogene tyrosine kinase, c-met, HGF receptor, HGF-SF receptor
no
no
NTVHIDLSALNPELVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEG
IIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAAR
NCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVN
TFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGEHYVHVNATYVNVK
NTVHIDLSALNPELVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEG
IIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAAR
NCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVN
TFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGEHYVHVNATYVNVK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
fall armyworm
Spodoptera
sample
MET
9606
Homo sapiens
High-five
7108
Spodoptera frugiperda
PVL1393
BACULOVIRUS
1
2.23
44.78
VAPOR DIFFUSION, HANGING DROP
7.1
PEG 5000 MME, isopropanol, Hepes, pH 7.1, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
software
database_2
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Database references
Derived calculations
Data collection
1
0
2003-10-07
1
1
2008-04-29
1
2
2011-07-13
1
3
2017-10-11
1
4
2021-10-27
1
5
2024-02-14
_software.classification
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2003-09-22
REL
KSA
K-252A
HOH
water
KSA
0
2
KSA
KSA
0
A
HOH
1
3
HOH
HOH
1
A
HOH
2
3
HOH
HOH
2
A
HOH
3
3
HOH
HOH
3
A
HOH
4
3
HOH
HOH
4
A
HOH
5
3
HOH
HOH
5
A
HOH
6
3
HOH
HOH
6
A
HOH
7
3
HOH
HOH
7
A
HOH
8
3
HOH
HOH
8
A
HOH
9
3
HOH
HOH
9
A
HOH
10
3
HOH
HOH
10
A
HOH
11
3
HOH
HOH
11
A
HOH
12
3
HOH
HOH
12
A
HOH
13
3
HOH
HOH
13
A
HOH
14
3
HOH
HOH
14
A
HOH
15
3
HOH
HOH
15
A
HOH
16
3
HOH
HOH
16
A
HOH
17
3
HOH
HOH
17
A
HOH
18
3
HOH
HOH
18
A
HOH
19
3
HOH
HOH
19
A
HOH
20
3
HOH
HOH
20
A
HOH
21
3
HOH
HOH
21
A
HOH
22
3
HOH
HOH
22
A
HOH
23
3
HOH
HOH
23
A
HOH
24
3
HOH
HOH
24
A
HOH
25
3
HOH
HOH
25
A
HOH
26
3
HOH
HOH
26
A
HOH
27
3
HOH
HOH
27
A
HOH
28
3
HOH
HOH
28
A
HOH
29
3
HOH
HOH
29
A
HOH
30
3
HOH
HOH
30
A
HOH
31
3
HOH
HOH
31
A
HOH
32
3
HOH
HOH
32
A
HOH
33
3
HOH
HOH
33
A
HOH
34
3
HOH
HOH
34
A
HOH
35
3
HOH
HOH
35
A
HOH
36
3
HOH
HOH
36
A
HOH
37
3
HOH
HOH
37
A
HOH
38
3
HOH
HOH
38
A
HOH
39
3
HOH
HOH
39
A
HOH
40
3
HOH
HOH
40
A
HOH
41
3
HOH
HOH
41
A
HOH
42
3
HOH
HOH
42
A
HOH
43
3
HOH
HOH
43
A
HOH
44
3
HOH
HOH
44
A
HOH
45
3
HOH
HOH
45
A
HOH
46
3
HOH
HOH
46
A
HOH
47
3
HOH
HOH
47
A
HOH
48
3
HOH
HOH
48
A
HOH
49
3
HOH
HOH
49
A
HOH
50
3
HOH
HOH
50
A
HOH
51
3
HOH
HOH
51
A
HOH
52
3
HOH
HOH
52
A
HOH
53
3
HOH
HOH
53
A
HOH
54
3
HOH
HOH
54
A
HOH
55
3
HOH
HOH
55
A
HOH
56
3
HOH
HOH
56
A
HOH
57
3
HOH
HOH
57
A
HOH
58
3
HOH
HOH
58
A
HOH
59
3
HOH
HOH
59
A
HOH
60
3
HOH
HOH
60
A
HOH
61
3
HOH
HOH
61
A
HOH
62
3
HOH
HOH
62
A
HOH
63
3
HOH
HOH
63
A
HOH
64
3
HOH
HOH
64
A
HOH
65
3
HOH
HOH
65
A
HOH
66
3
HOH
HOH
66
A
HOH
67
3
HOH
HOH
67
A
HOH
68
3
HOH
HOH
68
A
HOH
69
3
HOH
HOH
69
A
HOH
70
3
HOH
HOH
70
A
HOH
71
3
HOH
HOH
71
A
HOH
72
3
HOH
HOH
72
A
HOH
73
3
HOH
HOH
73
A
HOH
74
3
HOH
HOH
74
A
HOH
75
3
HOH
HOH
75
A
HOH
76
3
HOH
HOH
76
A
HOH
77
3
HOH
HOH
77
A
HOH
78
3
HOH
HOH
78
A
HOH
79
3
HOH
HOH
79
A
HOH
80
3
HOH
HOH
80
A
HOH
81
3
HOH
HOH
81
A
HOH
82
3
HOH
HOH
82
A
HOH
83
3
HOH
HOH
83
A
HOH
84
3
HOH
HOH
84
A
HOH
85
3
HOH
HOH
85
A
HOH
86
3
HOH
HOH
86
A
HOH
87
3
HOH
HOH
87
A
HOH
88
3
HOH
HOH
88
A
HOH
89
3
HOH
HOH
89
A
HOH
90
3
HOH
HOH
90
A
HOH
91
3
HOH
HOH
91
A
HOH
92
3
HOH
HOH
92
A
HOH
93
3
HOH
HOH
93
A
HOH
94
3
HOH
HOH
94
A
HOH
95
3
HOH
HOH
95
A
HOH
96
3
HOH
HOH
96
A
HOH
97
3
HOH
HOH
97
A
HOH
98
3
HOH
HOH
98
A
HOH
99
3
HOH
HOH
99
A
HOH
100
3
HOH
HOH
100
A
HOH
101
3
HOH
HOH
101
A
HOH
102
3
HOH
HOH
102
A
HOH
103
3
HOH
HOH
103
A
HOH
104
3
HOH
HOH
104
A
HOH
105
3
HOH
HOH
105
A
HOH
106
3
HOH
HOH
106
A
HOH
107
3
HOH
HOH
107
A
HOH
108
3
HOH
HOH
108
A
HOH
109
3
HOH
HOH
109
A
HOH
110
3
HOH
HOH
110
A
HOH
111
3
HOH
HOH
111
A
HOH
112
3
HOH
HOH
112
A
HOH
113
3
HOH
HOH
113
A
HOH
114
3
HOH
HOH
114
A
HOH
115
3
HOH
HOH
115
A
HOH
116
3
HOH
HOH
116
A
HOH
117
3
HOH
HOH
117
A
HOH
118
3
HOH
HOH
118
A
HOH
119
3
HOH
HOH
119
A
HOH
120
3
HOH
HOH
120
A
HOH
121
3
HOH
HOH
121
A
HOH
122
3
HOH
HOH
122
A
HOH
123
3
HOH
HOH
123
A
HOH
124
3
HOH
HOH
124
A
HOH
125
3
HOH
HOH
125
A
HOH
126
3
HOH
HOH
126
A
HOH
127
3
HOH
HOH
127
A
HOH
128
3
HOH
HOH
128
A
HOH
129
3
HOH
HOH
129
A
HOH
130
3
HOH
HOH
130
A
HOH
131
3
HOH
HOH
131
A
HOH
132
3
HOH
HOH
132
A
HOH
133
3
HOH
HOH
133
A
HOH
134
3
HOH
HOH
134
A
HOH
135
3
HOH
HOH
135
A
HOH
136
3
HOH
HOH
136
A
HOH
137
3
HOH
HOH
137
A
HOH
138
3
HOH
HOH
138
A
HOH
139
3
HOH
HOH
139
A
HOH
140
3
HOH
HOH
140
A
HOH
141
3
HOH
HOH
141
A
HOH
142
3
HOH
HOH
142
A
HOH
143
3
HOH
HOH
143
A
HOH
144
3
HOH
HOH
144
A
HOH
145
3
HOH
HOH
145
A
HOH
146
3
HOH
HOH
146
A
HOH
147
3
HOH
HOH
147
A
HOH
148
3
HOH
HOH
148
A
HOH
149
3
HOH
HOH
149
A
HOH
150
3
HOH
HOH
150
A
HOH
151
3
HOH
HOH
151
A
HOH
152
3
HOH
HOH
152
A
HOH
153
3
HOH
HOH
153
A
HOH
154
3
HOH
HOH
154
A
HOH
155
3
HOH
HOH
155
A
HOH
156
3
HOH
HOH
156
A
HOH
157
3
HOH
HOH
157
A
HOH
158
3
HOH
HOH
158
A
HOH
159
3
HOH
HOH
159
A
HOH
160
3
HOH
HOH
160
A
HOH
161
3
HOH
HOH
161
A
HOH
162
3
HOH
HOH
162
A
HOH
163
3
HOH
HOH
163
A
HOH
164
3
HOH
HOH
164
A
HOH
165
3
HOH
HOH
165
A
HOH
166
3
HOH
HOH
166
A
HOH
167
3
HOH
HOH
167
A
HOH
168
3
HOH
HOH
168
A
HOH
169
3
HOH
HOH
169
A
HOH
170
3
HOH
HOH
170
A
HOH
171
3
HOH
HOH
171
A
HOH
172
3
HOH
HOH
172
A
HOH
173
3
HOH
HOH
173
A
HOH
174
3
HOH
HOH
174
A
HOH
175
3
HOH
HOH
175
A
HOH
178
3
HOH
HOH
178
A
HOH
179
3
HOH
HOH
179
A
HOH
180
3
HOH
HOH
180
A
HOH
181
3
HOH
HOH
181
A
HOH
182
3
HOH
HOH
182
A
HOH
183
3
HOH
HOH
183
A
HOH
184
3
HOH
HOH
184
A
HOH
185
3
HOH
HOH
185
A
HOH
186
3
HOH
HOH
186
A
HOH
187
3
HOH
HOH
187
A
HOH
188
3
HOH
HOH
188
A
HOH
189
3
HOH
HOH
189
A
HOH
190
3
HOH
HOH
190
A
HOH
191
3
HOH
HOH
191
A
HOH
192
3
HOH
HOH
192
A
HOH
193
3
HOH
HOH
193
A
HOH
194
3
HOH
HOH
194
A
HOH
195
3
HOH
HOH
195
A
HOH
196
3
HOH
HOH
196
A
HOH
197
3
HOH
HOH
197
A
HOH
198
3
HOH
HOH
198
A
HOH
199
3
HOH
HOH
199
A
HOH
200
3
HOH
HOH
200
A
HOH
201
3
HOH
HOH
201
A
HOH
202
3
HOH
HOH
202
A
HOH
203
3
HOH
HOH
203
A
n
1
1049
A
THR
1050
n
2
THR
1050
A
VAL
1051
n
3
VAL
1051
A
HIS
1052
n
4
HIS
1052
A
ILE
1053
n
5
ILE
1053
A
ASP
1054
n
6
ASP
1054
A
LEU
1055
n
7
LEU
1055
A
SER
1056
n
8
SER
1056
A
ALA
1057
n
9
ALA
1057
A
LEU
1058
n
10
LEU
1058
A
ASN
1059
n
11
ASN
1059
A
PRO
1060
n
12
PRO
1060
A
GLU
1061
n
13
GLU
1061
A
LEU
1062
n
14
LEU
1062
A
VAL
1063
n
15
VAL
1063
A
GLN
1064
n
16
GLN
1064
A
ALA
1065
n
17
ALA
1065
A
VAL
1066
n
18
VAL
1066
A
GLN
1067
n
19
GLN
1067
A
HIS
1068
n
20
HIS
1068
A
VAL
1069
n
21
VAL
1069
A
VAL
1070
n
22
VAL
1070
A
ILE
1071
n
23
ILE
1071
A
GLY
1072
n
24
GLY
1072
A
PRO
1073
n
25
PRO
1073
A
SER
1074
n
26
SER
1074
A
SER
1075
n
27
SER
1075
A
LEU
1076
n
28
LEU
1076
A
ILE
1077
n
29
ILE
1077
A
VAL
1078
n
30
VAL
1078
A
HIS
1079
n
31
HIS
1079
A
PHE
1080
n
32
PHE
1080
A
ASN
1081
n
33
ASN
1081
A
GLU
1082
n
34
GLU
1082
A
VAL
1083
n
35
VAL
1083
A
ILE
1084
n
36
ILE
1084
A
GLY
1085
n
37
GLY
1085
A
ARG
1086
n
38
ARG
1086
A
GLY
1087
n
39
GLY
1087
A
HIS
1088
n
40
HIS
1088
A
PHE
1089
n
41
PHE
1089
A
GLY
1090
n
42
GLY
1090
A
CYS
1091
n
43
CYS
1091
A
VAL
1092
n
44
VAL
1092
A
TYR
1093
n
45
TYR
1093
A
HIS
1094
n
46
HIS
1094
A
GLY
1095
n
47
GLY
1095
A
THR
1096
n
48
THR
1096
A
LEU
1097
n
49
LEU
1097
A
LEU
1098
n
50
LEU
1098
A
ASP
1099
n
51
ASP
1099
A
n
52
1100
A
n
53
1101
A
n
54
1102
A
n
55
1103
A
LYS
1104
n
56
LYS
1104
A
ILE
1105
n
57
ILE
1105
A
HIS
1106
n
58
HIS
1106
A
CYS
1107
n
59
CYS
1107
A
ALA
1108
n
60
ALA
1108
A
VAL
1109
n
61
VAL
1109
A
LYS
1110
n
62
LYS
1110
A
SER
1111
n
63
SER
1111
A
LEU
1112
n
64
LEU
1112
A
ASN
1113
n
65
ASN
1113
A
ARG
1114
n
66
ARG
1114
A
ILE
1115
n
67
ILE
1115
A
THR
1116
n
68
THR
1116
A
ASP
1117
n
69
ASP
1117
A
ILE
1118
n
70
ILE
1118
A
GLY
1119
n
71
GLY
1119
A
GLU
1120
n
72
GLU
1120
A
VAL
1121
n
73
VAL
1121
A
SER
1122
n
74
SER
1122
A
GLN
1123
n
75
GLN
1123
A
PHE
1124
n
76
PHE
1124
A
LEU
1125
n
77
LEU
1125
A
THR
1126
n
78
THR
1126
A
GLU
1127
n
79
GLU
1127
A
GLY
1128
n
80
GLY
1128
A
ILE
1129
n
81
ILE
1129
A
ILE
1130
n
82
ILE
1130
A
MET
1131
n
83
MET
1131
A
LYS
1132
n
84
LYS
1132
A
ASP
1133
n
85
ASP
1133
A
PHE
1134
n
86
PHE
1134
A
SER
1135
n
87
SER
1135
A
HIS
1136
n
88
HIS
1136
A
PRO
1137
n
89
PRO
1137
A
ASN
1138
n
90
ASN
1138
A
VAL
1139
n
91
VAL
1139
A
LEU
1140
n
92
LEU
1140
A
SER
1141
n
93
SER
1141
A
LEU
1142
n
94
LEU
1142
A
LEU
1143
n
95
LEU
1143
A
GLY
1144
n
96
GLY
1144
A
ILE
1145
n
97
ILE
1145
A
CYS
1146
n
98
CYS
1146
A
LEU
1147
n
99
LEU
1147
A
ARG
1148
n
100
ARG
1148
A
SER
1149
n
101
SER
1149
A
GLU
1150
n
102
GLU
1150
A
GLY
1151
n
103
GLY
1151
A
SER
1152
n
104
SER
1152
A
PRO
1153
n
105
PRO
1153
A
LEU
1154
n
106
LEU
1154
A
VAL
1155
n
107
VAL
1155
A
VAL
1156
n
108
VAL
1156
A
LEU
1157
n
109
LEU
1157
A
PRO
1158
n
110
PRO
1158
A
TYR
1159
n
111
TYR
1159
A
MET
1160
n
112
MET
1160
A
LYS
1161
n
113
LYS
1161
A
HIS
1162
n
114
HIS
1162
A
GLY
1163
n
115
GLY
1163
A
ASP
1164
n
116
ASP
1164
A
LEU
1165
n
117
LEU
1165
A
ARG
1166
n
118
ARG
1166
A
ASN
1167
n
119
ASN
1167
A
PHE
1168
n
120
PHE
1168
A
ILE
1169
n
121
ILE
1169
A
ARG
1170
n
122
ARG
1170
A
ASN
1171
n
123
ASN
1171
A
GLU
1172
n
124
GLU
1172
A
THR
1173
n
125
THR
1173
A
HIS
1174
n
126
HIS
1174
A
ASN
1175
n
127
ASN
1175
A
PRO
1176
n
128
PRO
1176
A
THR
1177
n
129
THR
1177
A
VAL
1178
n
130
VAL
1178
A
LYS
1179
n
131
LYS
1179
A
ASP
1180
n
132
ASP
1180
A
LEU
1181
n
133
LEU
1181
A
ILE
1182
n
134
ILE
1182
A
GLY
1183
n
135
GLY
1183
A
PHE
1184
n
136
PHE
1184
A
GLY
1185
n
137
GLY
1185
A
LEU
1186
n
138
LEU
1186
A
GLN
1187
n
139
GLN
1187
A
VAL
1188
n
140
VAL
1188
A
ALA
1189
n
141
ALA
1189
A
LYS
1190
n
142
LYS
1190
A
GLY
1191
n
143
GLY
1191
A
MET
1192
n
144
MET
1192
A
LYS
1193
n
145
LYS
1193
A
PHE
1194
n
146
PHE
1194
A
LEU
1195
n
147
LEU
1195
A
ALA
1196
n
148
ALA
1196
A
SER
1197
n
149
SER
1197
A
LYS
1198
n
150
LYS
1198
A
LYS
1199
n
151
LYS
1199
A
PHE
1200
n
152
PHE
1200
A
VAL
1201
n
153
VAL
1201
A
HIS
1202
n
154
HIS
1202
A
ARG
1203
n
155
ARG
1203
A
ASP
1204
n
156
ASP
1204
A
LEU
1205
n
157
LEU
1205
A
ALA
1206
n
158
ALA
1206
A
ALA
1207
n
159
ALA
1207
A
ARG
1208
n
160
ARG
1208
A
ASN
1209
n
161
ASN
1209
A
CYS
1210
n
162
CYS
1210
A
MET
1211
n
163
MET
1211
A
LEU
1212
n
164
LEU
1212
A
ASP
1213
n
165
ASP
1213
A
GLU
1214
n
166
GLU
1214
A
LYS
1215
n
167
LYS
1215
A
PHE
1216
n
168
PHE
1216
A
THR
1217
n
169
THR
1217
A
VAL
1218
n
170
VAL
1218
A
LYS
1219
n
171
LYS
1219
A
VAL
1220
n
172
VAL
1220
A
ALA
1221
n
173
ALA
1221
A
ASP
1222
n
174
ASP
1222
A
PHE
1223
n
175
PHE
1223
A
GLY
1224
n
176
GLY
1224
A
LEU
1225
n
177
LEU
1225
A
ALA
1226
n
178
ALA
1226
A
ARG
1227
n
179
ARG
1227
A
ASP
1228
n
180
ASP
1228
A
MET
1229
n
181
MET
1229
A
TYR
1230
n
182
TYR
1230
A
ASP
1231
n
183
ASP
1231
A
LYS
1232
n
184
LYS
1232
A
GLU
1233
n
185
GLU
1233
A
PHE
1234
n
186
PHE
1234
A
ASP
1235
n
187
ASP
1235
A
SER
1236
n
188
SER
1236
A
VAL
1237
n
189
VAL
1237
A
HIS
1238
n
190
HIS
1238
A
ASN
1239
n
191
ASN
1239
A
LYS
1240
n
192
LYS
1240
A
THR
1241
n
193
THR
1241
A
GLY
1242
n
194
GLY
1242
A
ALA
1243
n
195
ALA
1243
A
LYS
1244
n
196
LYS
1244
A
LEU
1245
n
197
LEU
1245
A
PRO
1246
n
198
PRO
1246
A
VAL
1247
n
199
VAL
1247
A
LYS
1248
n
200
LYS
1248
A
TRP
1249
n
201
TRP
1249
A
MET
1250
n
202
MET
1250
A
ALA
1251
n
203
ALA
1251
A
LEU
1252
n
204
LEU
1252
A
GLU
1253
n
205
GLU
1253
A
SER
1254
n
206
SER
1254
A
LEU
1255
n
207
LEU
1255
A
GLN
1256
n
208
GLN
1256
A
THR
1257
n
209
THR
1257
A
GLN
1258
n
210
GLN
1258
A
LYS
1259
n
211
LYS
1259
A
PHE
1260
n
212
PHE
1260
A
THR
1261
n
213
THR
1261
A
THR
1262
n
214
THR
1262
A
LYS
1263
n
215
LYS
1263
A
SER
1264
n
216
SER
1264
A
ASP
1265
n
217
ASP
1265
A
VAL
1266
n
218
VAL
1266
A
TRP
1267
n
219
TRP
1267
A
SER
1268
n
220
SER
1268
A
PHE
1269
n
221
PHE
1269
A
GLY
1270
n
222
GLY
1270
A
VAL
1271
n
223
VAL
1271
A
LEU
1272
n
224
LEU
1272
A
LEU
1273
n
225
LEU
1273
A
TRP
1274
n
226
TRP
1274
A
GLU
1275
n
227
GLU
1275
A
LEU
1276
n
228
LEU
1276
A
MET
1277
n
229
MET
1277
A
THR
1278
n
230
THR
1278
A
ARG
1279
n
231
ARG
1279
A
GLY
1280
n
232
GLY
1280
A
ALA
1281
n
233
ALA
1281
A
PRO
1282
n
234
PRO
1282
A
PRO
1283
n
235
PRO
1283
A
TYR
1284
n
236
TYR
1284
A
PRO
1285
n
237
PRO
1285
A
n
238
1286
A
n
239
1287
A
n
240
1288
A
n
241
1289
A
n
242
1290
A
n
243
1291
A
ILE
1292
n
244
ILE
1292
A
THR
1293
n
245
THR
1293
A
VAL
1294
n
246
VAL
1294
A
TYR
1295
n
247
TYR
1295
A
LEU
1296
n
248
LEU
1296
A
LEU
1297
n
249
LEU
1297
A
GLN
1298
n
250
GLN
1298
A
GLY
1299
n
251
GLY
1299
A
ARG
1300
n
252
ARG
1300
A
ARG
1301
n
253
ARG
1301
A
LEU
1302
n
254
LEU
1302
A
LEU
1303
n
255
LEU
1303
A
GLN
1304
n
256
GLN
1304
A
PRO
1305
n
257
PRO
1305
A
GLU
1306
n
258
GLU
1306
A
TYR
1307
n
259
TYR
1307
A
CYS
1308
n
260
CYS
1308
A
PRO
1309
n
261
PRO
1309
A
ASP
1310
n
262
ASP
1310
A
PRO
1311
n
263
PRO
1311
A
LEU
1312
n
264
LEU
1312
A
TYR
1313
n
265
TYR
1313
A
GLU
1314
n
266
GLU
1314
A
VAL
1315
n
267
VAL
1315
A
MET
1316
n
268
MET
1316
A
LEU
1317
n
269
LEU
1317
A
LYS
1318
n
270
LYS
1318
A
CYS
1319
n
271
CYS
1319
A
TRP
1320
n
272
TRP
1320
A
HIS
1321
n
273
HIS
1321
A
PRO
1322
n
274
PRO
1322
A
LYS
1323
n
275
LYS
1323
A
ALA
1324
n
276
ALA
1324
A
GLU
1325
n
277
GLU
1325
A
MET
1326
n
278
MET
1326
A
ARG
1327
n
279
ARG
1327
A
PRO
1328
n
280
PRO
1328
A
SER
1329
n
281
SER
1329
A
PHE
1330
n
282
PHE
1330
A
SER
1331
n
283
SER
1331
A
GLU
1332
n
284
GLU
1332
A
LEU
1333
n
285
LEU
1333
A
VAL
1334
n
286
VAL
1334
A
SER
1335
n
287
SER
1335
A
ARG
1336
n
288
ARG
1336
A
ILE
1337
n
289
ILE
1337
A
SER
1338
n
290
SER
1338
A
ALA
1339
n
291
ALA
1339
A
ILE
1340
n
292
ILE
1340
A
PHE
1341
n
293
PHE
1341
A
SER
1342
n
294
SER
1342
A
THR
1343
n
295
THR
1343
A
PHE
1344
n
296
PHE
1344
A
ILE
1345
n
297
ILE
1345
A
GLY
1346
n
298
GLY
1346
A
GLU
1347
n
299
GLU
1347
A
HIS
1348
n
300
HIS
1348
A
TYR
1349
n
301
TYR
1349
A
VAL
1350
n
302
VAL
1350
A
HIS
1351
n
303
HIS
1351
A
VAL
1352
n
304
VAL
1352
A
ASN
1353
n
305
ASN
1353
A
ALA
1354
n
306
ALA
1354
A
THR
1355
n
307
THR
1355
A
TYR
1356
n
308
TYR
1356
A
VAL
1357
n
309
VAL
1357
A
ASN
1358
n
310
ASN
1358
A
VAL
1359
n
311
VAL
1359
A
LYS
1360
n
312
LYS
1360
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
1085
A
N
GLY
37
A
O
VAL
1092
A
O
VAL
44
A
N
CYS
1091
A
N
CYS
43
A
O
SER
1111
A
O
SER
63
A
N
ALA
1108
A
N
ALA
60
A
O
LEU
1157
A
O
LEU
109
A
O
VAL
1156
A
O
VAL
108
A
N
GLY
1144
A
N
GLY
96
A
N
MET
1211
A
N
MET
163
A
O
LYS
1219
A
O
LYS
171
1
A
ASN
1049
A
ASN
1
1
Y
1
A
ASN
1100
A
ASN
52
1
Y
1
A
ASP
1101
A
ASP
53
1
Y
1
A
GLY
1102
A
GLY
54
1
Y
1
A
LYS
1103
A
LYS
55
1
Y
1
A
ASP
1286
A
ASP
238
1
Y
1
A
VAL
1287
A
VAL
239
1
Y
1
A
ASN
1288
A
ASN
240
1
Y
1
A
THR
1289
A
THR
241
1
Y
1
A
PHE
1290
A
PHE
242
1
Y
1
A
ASP
1291
A
ASP
243
1
Y
1
5.47
0.90
118.30
123.77
A
A
A
CB
CG
OD2
ASP
ASP
ASP
1235
1235
1235
N
1
5.83
0.90
118.30
124.13
A
A
A
CB
CG
OD2
ASP
ASP
ASP
1310
1310
1310
N
1
A
A
CG2
OD2
THR
ASP
1050
1133
2.06
1_555
3_646
1
A
SER
1149
-38.42
140.23
1
A
ARG
1203
70.71
-31.47
1
A
ALA
1221
-128.87
-159.66
1
A
ASP
1228
83.01
22.18
12.236
0.43
0.00
0.00
-0.19
0.00
-0.25
0.948
0.933
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.19726
0.16959
0.17093
1.80
30
1436
29021
27531
5.0
96.03
2.033
0.065
RANDOM
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
0.124
0.113
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.80
30
201
2633
35
0
2397
0.012
0.021
2493
0.002
0.020
2277
1.810
1.972
3388
0.821
3.000
5293
5.493
5.000
297
0.079
0.200
379
0.008
0.020
2705
0.006
0.020
508
0.249
0.200
725
0.240
0.200
2562
0.081
0.200
1307
0.299
0.200
42
0.220
0.200
39
0.328
0.200
44
0.166
0.200
4
0.671
1.500
1498
1.305
2.000
2429
1.968
3.000
995
3.186
4.500
959
0.217
0.164
1.847
123
1844
20
1.8
30.0
1R0P
29021
0
0
0.043
1
34.0
3.45
96.0
0.079
1.8
1.86
12.2
2638
89.2
refinement
REFMAC
5.1.24
data collection
ProDC
data scaling
SCALEPACK
phasing
EPMR
Crystal structure of the tyrosine kinase domain of the hepatocyte growth factor receptor c-Met in complex with the microbial alkaloid K-252a
1
N
N
2
N
N
3
N
N
A
ASP
1054
A
ASP
6
HELX_P
A
LEU
1058
A
LEU
10
5
1
5
A
ASN
1059
A
ASN
11
HELX_P
A
GLN
1067
A
GLN
19
1
2
9
A
HIS
1068
A
HIS
20
HELX_P
A
VAL
1070
A
VAL
22
5
3
3
A
GLY
1072
A
GLY
24
HELX_P
A
SER
1074
A
SER
26
5
4
3
A
ASP
1117
A
ASP
69
HELX_P
A
ASP
1133
A
ASP
85
1
5
17
A
ASP
1164
A
ASP
116
HELX_P
A
ASN
1171
A
ASN
123
1
6
8
A
THR
1177
A
THR
129
HELX_P
A
LYS
1198
A
LYS
150
1
7
22
A
ALA
1206
A
ALA
158
HELX_P
A
ARG
1208
A
ARG
160
5
8
3
A
PHE
1223
A
PHE
175
HELX_P
A
ARG
1227
A
ARG
179
5
9
5
A
PRO
1246
A
PRO
198
HELX_P
A
MET
1250
A
MET
202
5
10
5
A
ALA
1251
A
ALA
203
HELX_P
A
GLN
1258
A
GLN
210
1
11
8
A
THR
1261
A
THR
213
HELX_P
A
THR
1278
A
THR
230
1
12
18
A
ILE
1292
A
ILE
244
HELX_P
A
GLN
1298
A
GLN
250
1
13
7
A
PRO
1309
A
PRO
261
HELX_P
A
TRP
1320
A
TRP
272
1
14
12
A
LYS
1323
A
LYS
275
HELX_P
A
ARG
1327
A
ARG
279
5
15
5
A
SER
1329
A
SER
281
HELX_P
A
THR
1343
A
THR
295
1
16
15
TRANSFERASE
Receptor tyrosine kinase, Signal Transduction, Grb2, Shc, TRANSFERASE
MET_HUMAN
UNP
1
1049
P08581
NTVHIDLSALNPELVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEG
IIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAAR
NCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVVLWELMTRGAPPYPDVN
TFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGEHYVHVNATYVNVK
1049
1360
1R0P
1049
1360
P08581
A
1
1
312
1
TYR
engineered mutation
PHE
1194
1R0P
A
P08581
UNP
1194
146
1
TYR
engineered mutation
PHE
1234
1R0P
A
P08581
UNP
1234
186
1
TYR
engineered mutation
ASP
1235
1R0P
A
P08581
UNP
1235
187
1
VAL
engineered mutation
LEU
1272
1R0P
A
P08581
UNP
1272
224
5
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
1076
A
LEU
28
A
GLY
1087
A
GLY
39
A
GLY
1090
A
GLY
42
A
LEU
1097
A
LEU
49
A
ILE
1105
A
ILE
57
A
LEU
1112
A
LEU
64
A
SER
1152
A
SER
104
A
PRO
1158
A
PRO
110
A
GLY
1144
A
GLY
96
A
ARG
1148
A
ARG
100
A
CYS
1210
A
CYS
162
A
LEU
1212
A
LEU
164
A
VAL
1218
A
VAL
170
A
VAL
1220
A
VAL
172
BINDING SITE FOR RESIDUE KSA A 0
A
KSA
0
Software
10
A
HOH
99
C
HOH
10
1_555
A
ILE
1084
A
ILE
36
10
1_555
A
ALA
1108
A
ALA
60
10
1_555
A
PRO
1158
A
PRO
110
10
1_555
A
TYR
1159
A
TYR
111
10
1_555
A
MET
1160
A
MET
112
10
1_555
A
MET
1211
A
MET
163
10
1_555
A
ARG
1227
A
ARG
179
10
1_555
A
MET
1229
A
MET
181
10
1_555
A
TYR
1230
A
TYR
182
10
1_555
19
P 21 21 21