data_1R41 # _entry.id 1R41 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1R41 pdb_00001r41 10.2210/pdb1r41/pdb NDB UD0045 ? ? RCSB RCSB020409 ? ? WWPDB D_1000020409 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-12-23 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1R41 _pdbx_database_status.recvd_initial_deposition_date 2003-10-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1R3Z _pdbx_database_related.details 'Crystal structures of d(Gm5CGm5CGCGC) and d(GCGCGm5CGm5C): Effects of methylation on alternating DNA octamers' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shi, K.' 1 'Pan, B.' 2 'Tippin, D.' 3 'Sundaralingam, M.' 4 # _citation.id primary _citation.title 'Structures of d(Gm5)CGm5CGCGC) and d(GCGCGm5CGm5C): effects of methylation on alternating DNA octamers.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 60 _citation.page_first 61 _citation.page_last 65 _citation.year 2004 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14684893 _citation.pdbx_database_id_DOI 10.1107/S0907444903021899 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shi, K.' 1 ? primary 'Pan, B.' 2 ? primary 'Tippin, D.' 3 ? primary 'Sundaralingam, M.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*CP*GP*CP*GP*(5CM)P*GP*(5CM))-3'" 2456.647 1 ? ? ? ? 2 water nat water 18.015 19 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DG)(DC)(DG)(5CM)(DG)(5CM)' _entity_poly.pdbx_seq_one_letter_code_can GCGCGCGC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DG n 1 4 DC n 1 5 DG n 1 6 5CM n 1 7 DG n 1 8 5CM n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'DNA Synthesizer' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG GUA A . n A 1 2 DC 2 2 2 DC CYT A . n A 1 3 DG 3 3 3 DG GUA A . n A 1 4 DC 4 4 4 DC CYT A . n A 1 5 DG 5 5 5 DG GUA A . n A 1 6 5CM 6 6 6 5CM CYM A . n A 1 7 DG 7 7 7 DG GUA A . n A 1 8 5CM 8 8 8 5CM CYM A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 101 HOH WAT A . B 2 HOH 2 102 102 HOH WAT A . B 2 HOH 3 103 103 HOH WAT A . B 2 HOH 4 104 104 HOH WAT A . B 2 HOH 5 105 105 HOH WAT A . B 2 HOH 6 106 106 HOH WAT A . B 2 HOH 7 107 107 HOH WAT A . B 2 HOH 8 108 108 HOH WAT A . B 2 HOH 9 109 109 HOH WAT A . B 2 HOH 10 110 110 HOH WAT A . B 2 HOH 11 111 111 HOH WAT A . B 2 HOH 12 112 112 HOH WAT A . B 2 HOH 13 113 113 HOH WAT A . B 2 HOH 14 114 114 HOH WAT A . B 2 HOH 15 115 115 HOH WAT A . B 2 HOH 16 116 116 HOH WAT A . B 2 HOH 17 117 117 HOH WAT A . B 2 HOH 18 118 118 HOH WAT A . B 2 HOH 19 119 119 HOH WAT A . # _cell.entry_id 1R41 _cell.length_a 43.12 _cell.length_b 43.12 _cell.length_c 24.77 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 # _symmetry.entry_id 1R41 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 96 _symmetry.cell_setting ? # _exptl.entry_id 1R41 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_percent_sol 45.46 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'cacodylate, magnesium chloride, spermine tetrachloride, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 cacodylate ? ? ? 1 2 1 'magnesium chloride' ? ? ? 1 3 1 'spermine tetrachloride' ? ? ? 1 4 1 H2O ? ? ? 1 5 2 cacodylate ? ? ? 1 6 2 'magnesium chloride' ? ? ? 1 7 2 'spermine tetrachloride' ? ? ? 1 8 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 # _reflns.entry_id 1R41 _reflns.number_all ? _reflns.number_obs 2192 _reflns.percent_possible_obs ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.80 _reflns.d_resolution_low 19.23 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1R41 _refine.ls_d_res_high 1.9 _refine.ls_d_res_low 10 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all 0.204 _refine.ls_R_factor_obs 0.183 _refine.ls_R_factor_R_work 0.183 _refine.ls_R_factor_R_free 0.198 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'Molecular Placement' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 163 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 19 _refine_hist.number_atoms_total 182 _refine_hist.d_res_high 1.9 _refine_hist.d_res_low 10 # _database_PDB_matrix.entry_id 1R41 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1R41 _struct.title 'Crystal structures of d(Gm5CGm5CGCGC) and d(GCGCGm5CGm5C): Effects of methylation on alternating DNA octamers' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1R41 _struct_keywords.pdbx_keywords DNA _struct_keywords.text DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1R41 _struct_ref.pdbx_db_accession 1R41 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1R41 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1R41 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 5 "O3'" ? ? ? 1_555 A 5CM 6 P ? ? A DG 5 A 5CM 6 1_555 ? ? ? ? ? ? ? 1.583 ? ? covale2 covale both ? A 5CM 6 "O3'" ? ? ? 1_555 A DG 7 P ? ? A 5CM 6 A DG 7 1_555 ? ? ? ? ? ? ? 1.680 ? ? covale3 covale both ? A DG 7 "O3'" ? ? ? 1_555 A 5CM 8 P ? ? A DG 7 A 5CM 8 1_555 ? ? ? ? ? ? ? 1.573 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A 5CM 8 N3 ? ? A DG 1 A 5CM 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A 5CM 8 O2 ? ? A DG 1 A 5CM 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A 5CM 8 N4 ? ? A DG 1 A 5CM 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 7 N1 ? ? A DC 2 A DG 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 7 O6 ? ? A DC 2 A DG 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 7 N2 ? ? A DC 2 A DG 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A 5CM 6 N3 ? ? A DG 3 A 5CM 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A 5CM 6 O2 ? ? A DG 3 A 5CM 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A 5CM 6 N4 ? ? A DG 3 A 5CM 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A DG 5 N1 ? ? A DC 4 A DG 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 5 O6 ? ? A DC 4 A DG 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DG 5 N2 ? ? A DC 4 A DG 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DC 4 N3 ? ? A DG 5 A DC 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DC 4 O2 ? ? A DG 5 A DC 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DC 4 N4 ? ? A DG 5 A DC 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A 5CM 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A 5CM 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A 5CM 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A 5CM 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A 5CM 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A 5CM 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 7 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 7 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 7 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A 5CM 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A 5CM 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A 5CM 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A 5CM 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A 5CM 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A 5CM 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" A DG 1 ? ? "C4'" A DG 1 ? ? 1.555 1.512 0.043 0.007 N 2 1 N9 A DG 1 ? ? C4 A DG 1 ? ? 1.319 1.375 -0.056 0.008 N 3 1 "O3'" A DG 1 ? ? P A DC 2 ? ? 1.683 1.607 0.076 0.012 Y 4 1 P A DC 2 ? ? "O5'" A DC 2 ? ? 1.512 1.593 -0.081 0.010 N 5 1 N1 A DC 2 ? ? C2 A DC 2 ? ? 1.309 1.397 -0.088 0.010 N 6 1 C5 A DC 2 ? ? C6 A DC 2 ? ? 1.411 1.339 0.072 0.008 N 7 1 "O3'" A DC 2 ? ? P A DG 3 ? ? 1.693 1.607 0.086 0.012 Y 8 1 C6 A DG 3 ? ? N1 A DG 3 ? ? 1.310 1.391 -0.081 0.007 N 9 1 N7 A DG 3 ? ? C8 A DG 3 ? ? 1.243 1.305 -0.062 0.006 N 10 1 N9 A DG 3 ? ? C4 A DG 3 ? ? 1.297 1.375 -0.078 0.008 N 11 1 C2 A DG 3 ? ? N2 A DG 3 ? ? 1.220 1.341 -0.121 0.010 N 12 1 P A DG 5 ? ? "O5'" A DG 5 ? ? 1.514 1.593 -0.079 0.010 N 13 1 C6 A DG 5 ? ? N1 A DG 5 ? ? 1.447 1.391 0.056 0.007 N 14 1 C2 A DG 5 ? ? N2 A DG 5 ? ? 1.407 1.341 0.066 0.010 N 15 1 "O3'" A 5CM 6 ? ? P A DG 7 ? ? 1.680 1.607 0.073 0.012 Y 16 1 P A DG 7 ? ? OP1 A DG 7 ? ? 1.638 1.485 0.153 0.017 N 17 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? 1.336 1.418 -0.082 0.012 N 18 1 "O3'" A DG 7 ? ? "C3'" A DG 7 ? ? 1.342 1.419 -0.077 0.006 N 19 1 N3 A DG 7 ? ? C4 A DG 7 ? ? 1.218 1.350 -0.132 0.007 N 20 1 C5 A DG 7 ? ? C6 A DG 7 ? ? 1.480 1.419 0.061 0.010 N 21 1 N9 A DG 7 ? ? C4 A DG 7 ? ? 1.430 1.375 0.055 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C4'" A DG 1 ? ? "C3'" A DG 1 ? ? 101.05 104.50 -3.45 0.40 N 2 1 C5 A DG 1 ? ? C6 A DG 1 ? ? O6 A DG 1 ? ? 133.82 128.60 5.22 0.60 N 3 1 "O3'" A DC 2 ? ? P A DG 3 ? ? OP1 A DG 3 ? ? 91.52 105.20 -13.68 2.20 Y 4 1 "O5'" A DG 3 ? ? P A DG 3 ? ? OP1 A DG 3 ? ? 123.35 110.70 12.65 1.20 N 5 1 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 101.76 104.50 -2.74 0.40 N 6 1 "C5'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 124.23 115.70 8.53 1.20 N 7 1 "O5'" A DC 4 ? ? P A DC 4 ? ? OP2 A DC 4 ? ? 120.89 110.70 10.19 1.20 N 8 1 "O3'" A DC 4 ? ? P A DG 5 ? ? OP2 A DG 5 ? ? 119.37 110.50 8.87 1.10 Y 9 1 "O5'" A DG 5 ? ? "C5'" A DG 5 ? ? "C4'" A DG 5 ? ? 104.36 109.40 -5.04 0.80 N 10 1 "O3'" A DG 5 ? ? P A 5CM 6 ? ? OP2 A 5CM 6 ? ? 120.61 110.50 10.11 1.10 Y 11 1 "O3'" A 5CM 6 ? ? P A DG 7 ? ? OP2 A DG 7 ? ? 118.13 110.50 7.63 1.10 Y 12 1 "O5'" A DG 7 ? ? P A DG 7 ? ? OP2 A DG 7 ? ? 97.63 105.70 -8.07 0.90 N 13 1 "O4'" A DG 7 ? ? "C4'" A DG 7 ? ? "C3'" A DG 7 ? ? 101.68 104.50 -2.82 0.40 N 14 1 "O3'" A DG 7 ? ? P A 5CM 8 ? ? OP2 A 5CM 8 ? ? 130.78 110.50 20.28 1.10 Y # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 1 ? ? 0.055 'SIDE CHAIN' 2 1 DC A 2 ? ? 0.071 'SIDE CHAIN' 3 1 DG A 3 ? ? 0.099 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 5CM 6 A 5CM 6 ? DC ? 2 A 5CM 8 A 5CM 8 ? DC ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 HOH O O N N 109 HOH H1 H N N 110 HOH H2 H N N 111 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 HOH O H1 sing N N 113 HOH O H2 sing N N 114 # _ndb_struct_conf_na.entry_id 1R41 _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A 5CM 8 7_555 -0.263 0.007 -0.235 -6.963 -6.098 0.930 1 A_DG1:5CM8_A A 1 ? A 8 ? 19 1 1 A DC 2 1_555 A DG 7 7_555 0.305 -0.002 -0.206 9.535 -6.994 2.739 2 A_DC2:DG7_A A 2 ? A 7 ? 19 1 1 A DG 3 1_555 A 5CM 6 7_555 -0.073 -0.127 -0.302 -8.137 -13.235 1.618 3 A_DG3:5CM6_A A 3 ? A 6 ? 19 1 1 A DC 4 1_555 A DG 5 7_555 0.295 -0.126 0.094 -4.720 -3.291 2.653 4 A_DC4:DG5_A A 4 ? A 5 ? 19 1 1 A DG 5 1_555 A DC 4 7_555 -0.295 -0.126 0.094 4.720 -3.291 2.653 5 A_DG5:DC4_A A 5 ? A 4 ? 19 1 1 A 5CM 6 1_555 A DG 3 7_555 0.073 -0.127 -0.302 8.137 -13.235 1.618 6 A_5CM6:DG3_A A 6 ? A 3 ? 19 1 1 A DG 7 1_555 A DC 2 7_555 -0.305 -0.002 -0.206 -9.535 -6.994 2.739 7 A_DG7:DC2_A A 7 ? A 2 ? 19 1 1 A 5CM 8 1_555 A DG 1 7_555 0.263 0.007 -0.235 6.963 -6.098 0.930 8 A_5CM8:DG1_A A 8 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A 5CM 8 7_555 A DC 2 1_555 A DG 7 7_555 0.443 -1.172 3.064 -1.498 1.926 34.950 -2.215 -0.944 2.977 3.202 2.491 35.032 1 AA_DG1DC2:DG75CM8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A DC 2 1_555 A DG 7 7_555 A DG 3 1_555 A 5CM 6 7_555 -0.307 -1.567 3.691 1.655 13.718 30.159 -5.131 0.826 2.721 24.793 -2.991 33.107 2 AA_DC2DG3:5CM6DG7_AA A 2 ? A 7 ? A 3 ? A 6 ? 1 A DG 3 1_555 A 5CM 6 7_555 A DC 4 1_555 A DG 5 7_555 0.104 -1.400 3.305 -3.127 -0.495 37.412 -2.109 -0.575 3.304 -0.770 4.864 37.541 3 AA_DG3DC4:DG55CM6_AA A 3 ? A 6 ? A 4 ? A 5 ? 1 A DC 4 1_555 A DG 5 7_555 A DG 5 1_555 A DC 4 7_555 0.000 -2.170 3.054 0.000 6.154 19.953 -8.190 0.000 2.288 17.237 0.000 20.872 4 AA_DC4DG5:DC4DG5_AA A 4 ? A 5 ? A 5 ? A 4 ? 1 A DG 5 1_555 A DC 4 7_555 A 5CM 6 1_555 A DG 3 7_555 -0.104 -1.400 3.305 3.127 -0.495 37.412 -2.109 0.575 3.304 -0.770 -4.864 37.541 5 AA_DG55CM6:DG3DC4_AA A 5 ? A 4 ? A 6 ? A 3 ? 1 A 5CM 6 1_555 A DG 3 7_555 A DG 7 1_555 A DC 2 7_555 0.307 -1.567 3.691 -1.655 13.718 30.159 -5.131 -0.826 2.721 24.793 2.991 33.107 6 AA_5CM6DG7:DC2DG3_AA A 6 ? A 3 ? A 7 ? A 2 ? 1 A DG 7 1_555 A DC 2 7_555 A 5CM 8 1_555 A DG 1 7_555 -0.443 -1.172 3.064 1.498 1.926 34.950 -2.215 0.944 2.977 3.202 -2.491 35.032 7 AA_DG75CM8:DG1DC2_AA A 7 ? A 2 ? A 8 ? A 1 ? # _atom_sites.entry_id 1R41 _atom_sites.fract_transf_matrix[1][1] 0.023191 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023191 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.040371 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 29.002 19.538 -5.666 1.00 29.10 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 28.768 18.211 -5.166 1.00 27.31 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 29.997 17.521 -4.508 1.00 28.25 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 31.191 17.607 -5.311 1.00 26.07 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 30.426 18.233 -3.285 1.00 28.35 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 29.786 17.826 -2.113 1.00 32.50 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 31.902 17.823 -3.143 1.00 27.29 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 32.322 17.837 -4.606 1.00 27.21 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 32.759 19.153 -5.011 1.00 26.18 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 32.049 20.021 -5.825 1.00 26.73 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 32.748 21.024 -6.241 1.00 26.17 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 33.941 20.879 -5.506 1.00 24.99 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 35.174 21.693 -5.462 1.00 25.56 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 35.515 22.763 -5.986 1.00 26.72 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 36.121 21.068 -4.655 1.00 28.37 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 35.945 19.892 -4.000 1.00 27.77 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 37.002 19.551 -3.349 1.00 30.49 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 34.860 19.185 -3.986 1.00 26.54 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 33.920 19.728 -4.762 1.00 24.63 ? 1 DG A C4 1 ATOM 20 P P . DC A 1 2 ? 29.403 18.896 -0.872 1.00 35.73 ? 2 DC A P 1 ATOM 21 O OP1 . DC A 1 2 ? 28.409 18.106 -0.088 1.00 36.79 ? 2 DC A OP1 1 ATOM 22 O OP2 . DC A 1 2 ? 29.014 20.215 -1.474 1.00 32.95 ? 2 DC A OP2 1 ATOM 23 O "O5'" . DC A 1 2 ? 30.567 19.213 0.040 1.00 31.57 ? 2 DC A "O5'" 1 ATOM 24 C "C5'" . DC A 1 2 ? 31.295 18.286 0.600 1.00 33.41 ? 2 DC A "C5'" 1 ATOM 25 C "C4'" . DC A 1 2 ? 32.703 18.731 0.877 1.00 31.91 ? 2 DC A "C4'" 1 ATOM 26 O "O4'" . DC A 1 2 ? 33.383 18.904 -0.410 1.00 31.64 ? 2 DC A "O4'" 1 ATOM 27 C "C3'" . DC A 1 2 ? 32.915 20.048 1.601 1.00 33.72 ? 2 DC A "C3'" 1 ATOM 28 O "O3'" . DC A 1 2 ? 32.971 19.977 3.082 1.00 38.80 ? 2 DC A "O3'" 1 ATOM 29 C "C2'" . DC A 1 2 ? 34.369 20.318 1.229 1.00 32.83 ? 2 DC A "C2'" 1 ATOM 30 C "C1'" . DC A 1 2 ? 34.474 19.854 -0.246 1.00 31.03 ? 2 DC A "C1'" 1 ATOM 31 N N1 . DC A 1 2 ? 34.123 21.104 -1.010 1.00 28.11 ? 2 DC A N1 1 ATOM 32 C C2 . DC A 1 2 ? 35.069 21.955 -1.319 1.00 28.55 ? 2 DC A C2 1 ATOM 33 O O2 . DC A 1 2 ? 36.175 21.804 -0.786 1.00 33.12 ? 2 DC A O2 1 ATOM 34 N N3 . DC A 1 2 ? 34.892 22.942 -2.223 1.00 26.56 ? 2 DC A N3 1 ATOM 35 C C4 . DC A 1 2 ? 33.682 23.155 -2.758 1.00 29.26 ? 2 DC A C4 1 ATOM 36 N N4 . DC A 1 2 ? 33.478 24.259 -3.560 1.00 27.25 ? 2 DC A N4 1 ATOM 37 C C5 . DC A 1 2 ? 32.576 22.280 -2.491 1.00 28.28 ? 2 DC A C5 1 ATOM 38 C C6 . DC A 1 2 ? 32.837 21.279 -1.531 1.00 29.49 ? 2 DC A C6 1 ATOM 39 P P . DG A 1 3 ? 32.387 21.256 4.025 1.00 39.73 ? 3 DG A P 1 ATOM 40 O OP1 . DG A 1 3 ? 31.863 20.300 5.069 1.00 40.98 ? 3 DG A OP1 1 ATOM 41 O OP2 . DG A 1 3 ? 31.329 21.963 3.424 1.00 39.39 ? 3 DG A OP2 1 ATOM 42 O "O5'" . DG A 1 3 ? 33.699 22.085 4.201 1.00 38.30 ? 3 DG A "O5'" 1 ATOM 43 C "C5'" . DG A 1 3 ? 34.824 21.574 4.646 1.00 36.47 ? 3 DG A "C5'" 1 ATOM 44 C "C4'" . DG A 1 3 ? 35.946 22.571 4.572 1.00 36.52 ? 3 DG A "C4'" 1 ATOM 45 O "O4'" . DG A 1 3 ? 36.143 22.657 3.157 1.00 38.24 ? 3 DG A "O4'" 1 ATOM 46 C "C3'" . DG A 1 3 ? 35.814 24.047 4.959 1.00 38.17 ? 3 DG A "C3'" 1 ATOM 47 O "O3'" . DG A 1 3 ? 36.265 24.393 6.295 1.00 38.83 ? 3 DG A "O3'" 1 ATOM 48 C "C2'" . DG A 1 3 ? 36.823 24.729 4.065 1.00 35.73 ? 3 DG A "C2'" 1 ATOM 49 C "C1'" . DG A 1 3 ? 36.798 23.845 2.761 1.00 35.37 ? 3 DG A "C1'" 1 ATOM 50 N N9 . DG A 1 3 ? 35.832 24.553 1.888 1.00 30.85 ? 3 DG A N9 1 ATOM 51 C C8 . DG A 1 3 ? 34.514 24.204 1.632 1.00 28.74 ? 3 DG A C8 1 ATOM 52 N N7 . DG A 1 3 ? 34.054 24.827 0.660 1.00 27.54 ? 3 DG A N7 1 ATOM 53 C C5 . DG A 1 3 ? 35.030 25.757 0.370 1.00 26.60 ? 3 DG A C5 1 ATOM 54 C C6 . DG A 1 3 ? 35.030 26.894 -0.569 1.00 22.91 ? 3 DG A C6 1 ATOM 55 O O6 . DG A 1 3 ? 34.194 27.174 -1.368 1.00 24.28 ? 3 DG A O6 1 ATOM 56 N N1 . DG A 1 3 ? 36.111 27.616 -0.409 1.00 19.33 ? 3 DG A N1 1 ATOM 57 C C2 . DG A 1 3 ? 37.134 27.406 0.502 1.00 21.66 ? 3 DG A C2 1 ATOM 58 N N2 . DG A 1 3 ? 38.064 28.194 0.453 1.00 22.50 ? 3 DG A N2 1 ATOM 59 N N3 . DG A 1 3 ? 37.193 26.434 1.359 1.00 23.78 ? 3 DG A N3 1 ATOM 60 C C4 . DG A 1 3 ? 36.108 25.617 1.200 1.00 26.90 ? 3 DG A C4 1 ATOM 61 P P . DC A 1 4 ? 35.451 25.592 7.038 1.00 41.04 ? 4 DC A P 1 ATOM 62 O OP1 . DC A 1 4 ? 36.091 25.406 8.384 1.00 40.06 ? 4 DC A OP1 1 ATOM 63 O OP2 . DC A 1 4 ? 33.987 25.422 6.884 1.00 38.33 ? 4 DC A OP2 1 ATOM 64 O "O5'" . DC A 1 4 ? 36.183 26.909 6.511 1.00 36.12 ? 4 DC A "O5'" 1 ATOM 65 C "C5'" . DC A 1 4 ? 37.514 27.073 6.685 1.00 31.66 ? 4 DC A "C5'" 1 ATOM 66 C "C4'" . DC A 1 4 ? 37.953 28.380 6.085 1.00 31.19 ? 4 DC A "C4'" 1 ATOM 67 O "O4'" . DC A 1 4 ? 37.898 28.351 4.627 1.00 31.22 ? 4 DC A "O4'" 1 ATOM 68 C "C3'" . DC A 1 4 ? 36.907 29.456 6.437 1.00 29.12 ? 4 DC A "C3'" 1 ATOM 69 O "O3'" . DC A 1 4 ? 37.393 30.146 7.677 1.00 31.60 ? 4 DC A "O3'" 1 ATOM 70 C "C2'" . DC A 1 4 ? 37.176 30.443 5.317 1.00 27.40 ? 4 DC A "C2'" 1 ATOM 71 C "C1'" . DC A 1 4 ? 37.447 29.556 4.131 1.00 27.48 ? 4 DC A "C1'" 1 ATOM 72 N N1 . DC A 1 4 ? 36.165 29.272 3.384 1.00 24.46 ? 4 DC A N1 1 ATOM 73 C C2 . DC A 1 4 ? 35.835 30.140 2.401 1.00 20.59 ? 4 DC A C2 1 ATOM 74 O O2 . DC A 1 4 ? 36.591 31.087 2.266 1.00 22.37 ? 4 DC A O2 1 ATOM 75 N N3 . DC A 1 4 ? 34.686 29.981 1.629 1.00 21.11 ? 4 DC A N3 1 ATOM 76 C C4 . DC A 1 4 ? 33.866 28.978 1.962 1.00 22.19 ? 4 DC A C4 1 ATOM 77 N N4 . DC A 1 4 ? 32.664 28.814 1.287 1.00 22.32 ? 4 DC A N4 1 ATOM 78 C C5 . DC A 1 4 ? 34.180 28.063 3.042 1.00 21.40 ? 4 DC A C5 1 ATOM 79 C C6 . DC A 1 4 ? 35.367 28.249 3.691 1.00 22.69 ? 4 DC A C6 1 ATOM 80 P P . DG A 1 5 ? 36.455 31.152 8.392 1.00 30.29 ? 5 DG A P 1 ATOM 81 O OP1 . DG A 1 5 ? 37.153 31.316 9.594 1.00 34.80 ? 5 DG A OP1 1 ATOM 82 O OP2 . DG A 1 5 ? 35.060 30.819 8.567 1.00 31.93 ? 5 DG A OP2 1 ATOM 83 O "O5'" . DG A 1 5 ? 36.699 32.348 7.497 1.00 28.60 ? 5 DG A "O5'" 1 ATOM 84 C "C5'" . DG A 1 5 ? 35.658 33.285 7.378 1.00 24.45 ? 5 DG A "C5'" 1 ATOM 85 C "C4'" . DG A 1 5 ? 36.113 34.208 6.300 1.00 25.02 ? 5 DG A "C4'" 1 ATOM 86 O "O4'" . DG A 1 5 ? 36.087 33.444 5.013 1.00 24.06 ? 5 DG A "O4'" 1 ATOM 87 C "C3'" . DG A 1 5 ? 35.215 35.376 6.023 1.00 26.34 ? 5 DG A "C3'" 1 ATOM 88 O "O3'" . DG A 1 5 ? 35.582 36.512 6.830 1.00 27.71 ? 5 DG A "O3'" 1 ATOM 89 C "C2'" . DG A 1 5 ? 35.434 35.712 4.530 1.00 22.49 ? 5 DG A "C2'" 1 ATOM 90 C "C1'" . DG A 1 5 ? 35.616 34.303 3.974 1.00 22.65 ? 5 DG A "C1'" 1 ATOM 91 N N9 . DG A 1 5 ? 34.318 33.708 3.523 1.00 19.71 ? 5 DG A N9 1 ATOM 92 C C8 . DG A 1 5 ? 33.759 32.554 4.050 1.00 16.61 ? 5 DG A C8 1 ATOM 93 N N7 . DG A 1 5 ? 32.752 32.140 3.398 1.00 17.77 ? 5 DG A N7 1 ATOM 94 C C5 . DG A 1 5 ? 32.623 33.049 2.342 1.00 19.61 ? 5 DG A C5 1 ATOM 95 C C6 . DG A 1 5 ? 31.616 33.155 1.279 1.00 19.87 ? 5 DG A C6 1 ATOM 96 O O6 . DG A 1 5 ? 30.549 32.448 1.147 1.00 22.58 ? 5 DG A O6 1 ATOM 97 N N1 . DG A 1 5 ? 31.838 34.318 0.447 1.00 20.02 ? 5 DG A N1 1 ATOM 98 C C2 . DG A 1 5 ? 32.912 35.222 0.619 1.00 20.39 ? 5 DG A C2 1 ATOM 99 N N2 . DG A 1 5 ? 32.995 36.234 -0.355 1.00 19.15 ? 5 DG A N2 1 ATOM 100 N N3 . DG A 1 5 ? 33.791 35.143 1.598 1.00 20.69 ? 5 DG A N3 1 ATOM 101 C C4 . DG A 1 5 ? 33.562 34.080 2.462 1.00 19.59 ? 5 DG A C4 1 HETATM 102 N N1 . 5CM A 1 6 ? 31.753 37.844 2.829 1.00 21.84 ? 6 5CM A N1 1 HETATM 103 C C2 . 5CM A 1 6 ? 30.804 37.569 1.950 1.00 21.35 ? 6 5CM A C2 1 HETATM 104 N N3 . 5CM A 1 6 ? 29.960 36.485 2.124 1.00 21.31 ? 6 5CM A N3 1 HETATM 105 C C4 . 5CM A 1 6 ? 30.067 35.712 3.206 1.00 22.85 ? 6 5CM A C4 1 HETATM 106 C C5 . 5CM A 1 6 ? 31.028 36.006 4.230 1.00 20.91 ? 6 5CM A C5 1 HETATM 107 C C5A . 5CM A 1 6 ? 31.090 35.138 5.486 1.00 22.08 ? 6 5CM A C5A 1 HETATM 108 C C6 . 5CM A 1 6 ? 31.828 37.117 4.005 1.00 23.29 ? 6 5CM A C6 1 HETATM 109 O O2 . 5CM A 1 6 ? 30.703 38.292 0.982 1.00 25.49 ? 6 5CM A O2 1 HETATM 110 N N4 . 5CM A 1 6 ? 29.244 34.629 3.385 1.00 22.21 ? 6 5CM A N4 1 HETATM 111 C "C1'" . 5CM A 1 6 ? 32.744 38.866 2.492 1.00 25.13 ? 6 5CM A "C1'" 1 HETATM 112 C "C2'" . 5CM A 1 6 ? 32.103 40.185 3.099 1.00 24.69 ? 6 5CM A "C2'" 1 HETATM 113 C "C3'" . 5CM A 1 6 ? 32.818 40.170 4.500 1.00 28.16 ? 6 5CM A "C3'" 1 HETATM 114 C "C4'" . 5CM A 1 6 ? 34.183 39.559 4.214 1.00 28.28 ? 6 5CM A "C4'" 1 HETATM 115 O "O4'" . 5CM A 1 6 ? 33.913 38.554 3.231 1.00 26.64 ? 6 5CM A "O4'" 1 HETATM 116 O "O3'" . 5CM A 1 6 ? 32.806 41.602 4.896 1.00 31.23 ? 6 5CM A "O3'" 1 HETATM 117 C "C5'" . 5CM A 1 6 ? 34.822 38.982 5.427 1.00 29.01 ? 6 5CM A "C5'" 1 HETATM 118 O "O5'" . 5CM A 1 6 ? 33.957 38.412 6.180 1.00 26.75 ? 6 5CM A "O5'" 1 HETATM 119 P P . 5CM A 1 6 ? 34.409 37.429 7.369 1.00 29.72 ? 6 5CM A P 1 HETATM 120 O OP1 . 5CM A 1 6 ? 35.219 38.405 8.260 1.00 32.33 ? 6 5CM A OP1 1 HETATM 121 O OP2 . 5CM A 1 6 ? 33.286 36.884 7.857 1.00 27.15 ? 6 5CM A OP2 1 ATOM 122 P P . DG A 1 7 ? 31.482 42.084 5.811 1.00 32.23 ? 7 DG A P 1 ATOM 123 O OP1 . DG A 1 7 ? 32.028 43.521 6.376 1.00 35.30 ? 7 DG A OP1 1 ATOM 124 O OP2 . DG A 1 7 ? 30.781 41.058 6.621 1.00 33.50 ? 7 DG A OP2 1 ATOM 125 O "O5'" . DG A 1 7 ? 30.354 42.261 4.666 1.00 29.77 ? 7 DG A "O5'" 1 ATOM 126 C "C5'" . DG A 1 7 ? 30.534 43.095 3.513 1.00 29.08 ? 7 DG A "C5'" 1 ATOM 127 C "C4'" . DG A 1 7 ? 29.273 43.007 2.646 1.00 31.42 ? 7 DG A "C4'" 1 ATOM 128 O "O4'" . DG A 1 7 ? 29.162 41.623 2.209 1.00 28.96 ? 7 DG A "O4'" 1 ATOM 129 C "C3'" . DG A 1 7 ? 27.974 43.199 3.384 1.00 31.10 ? 7 DG A "C3'" 1 ATOM 130 O "O3'" . DG A 1 7 ? 27.420 44.413 3.238 1.00 35.30 ? 7 DG A "O3'" 1 ATOM 131 C "C2'" . DG A 1 7 ? 26.999 42.296 2.619 1.00 28.64 ? 7 DG A "C2'" 1 ATOM 132 C "C1'" . DG A 1 7 ? 27.887 41.299 1.974 1.00 27.65 ? 7 DG A "C1'" 1 ATOM 133 N N9 . DG A 1 7 ? 27.694 40.031 2.690 1.00 25.27 ? 7 DG A N9 1 ATOM 134 C C8 . DG A 1 7 ? 28.469 39.472 3.657 1.00 23.03 ? 7 DG A C8 1 ATOM 135 N N7 . DG A 1 7 ? 28.048 38.297 4.039 1.00 23.39 ? 7 DG A N7 1 ATOM 136 C C5 . DG A 1 7 ? 26.857 38.062 3.383 1.00 23.83 ? 7 DG A C5 1 ATOM 137 C C6 . DG A 1 7 ? 25.870 36.960 3.417 1.00 22.61 ? 7 DG A C6 1 ATOM 138 O O6 . DG A 1 7 ? 25.832 35.972 4.105 1.00 24.41 ? 7 DG A O6 1 ATOM 139 N N1 . DG A 1 7 ? 24.935 37.102 2.396 1.00 22.54 ? 7 DG A N1 1 ATOM 140 C C2 . DG A 1 7 ? 24.837 38.223 1.674 1.00 21.39 ? 7 DG A C2 1 ATOM 141 N N2 . DG A 1 7 ? 23.758 38.268 0.859 1.00 22.46 ? 7 DG A N2 1 ATOM 142 N N3 . DG A 1 7 ? 25.644 39.281 1.764 1.00 21.83 ? 7 DG A N3 1 ATOM 143 C C4 . DG A 1 7 ? 26.583 39.145 2.528 1.00 24.75 ? 7 DG A C4 1 HETATM 144 N N1 . 5CM A 1 8 ? 22.684 40.903 3.635 1.00 30.97 ? 8 5CM A N1 1 HETATM 145 C C2 . 5CM A 1 8 ? 22.085 39.701 3.684 1.00 28.98 ? 8 5CM A C2 1 HETATM 146 N N3 . 5CM A 1 8 ? 22.641 38.754 4.450 1.00 28.92 ? 8 5CM A N3 1 HETATM 147 C C4 . 5CM A 1 8 ? 23.666 39.053 5.231 1.00 25.80 ? 8 5CM A C4 1 HETATM 148 C C5 . 5CM A 1 8 ? 24.245 40.339 5.231 1.00 27.01 ? 8 5CM A C5 1 HETATM 149 C C5A . 5CM A 1 8 ? 25.471 40.619 5.979 1.00 24.76 ? 8 5CM A C5A 1 HETATM 150 C C6 . 5CM A 1 8 ? 23.659 41.225 4.480 1.00 27.29 ? 8 5CM A C6 1 HETATM 151 O O2 . 5CM A 1 8 ? 20.981 39.497 3.013 1.00 25.44 ? 8 5CM A O2 1 HETATM 152 N N4 . 5CM A 1 8 ? 24.096 38.085 5.914 1.00 24.77 ? 8 5CM A N4 1 HETATM 153 C "C1'" . 5CM A 1 8 ? 22.165 41.881 2.523 1.00 35.35 ? 8 5CM A "C1'" 1 HETATM 154 C "C2'" . 5CM A 1 8 ? 21.200 42.875 3.191 1.00 36.44 ? 8 5CM A "C2'" 1 HETATM 155 C "C3'" . 5CM A 1 8 ? 21.870 44.270 3.082 1.00 41.62 ? 8 5CM A "C3'" 1 HETATM 156 C "C4'" . 5CM A 1 8 ? 23.277 44.067 2.431 1.00 37.56 ? 8 5CM A "C4'" 1 HETATM 157 O "O4'" . 5CM A 1 8 ? 23.221 42.684 2.038 1.00 39.63 ? 8 5CM A "O4'" 1 HETATM 158 O "O3'" . 5CM A 1 8 ? 20.751 44.374 2.044 1.00 44.72 ? 8 5CM A "O3'" 1 HETATM 159 C "C5'" . 5CM A 1 8 ? 24.343 43.791 3.416 1.00 38.57 ? 8 5CM A "C5'" 1 HETATM 160 O "O5'" . 5CM A 1 8 ? 24.999 44.930 3.692 1.00 37.51 ? 8 5CM A "O5'" 1 HETATM 161 P P . 5CM A 1 8 ? 26.406 44.894 4.340 1.00 38.61 ? 8 5CM A P 1 HETATM 162 O OP1 . 5CM A 1 8 ? 26.679 46.384 4.358 1.00 38.13 ? 8 5CM A OP1 1 HETATM 163 O OP2 . 5CM A 1 8 ? 25.482 44.155 5.148 1.00 37.35 ? 8 5CM A OP2 1 HETATM 164 O O . HOH B 2 . ? 36.084 36.854 1.226 1.00 22.69 ? 101 HOH A O 1 HETATM 165 O O . HOH B 2 . ? 28.577 37.337 6.645 1.00 26.51 ? 102 HOH A O 1 HETATM 166 O O . HOH B 2 . ? 31.533 24.907 -0.209 1.00 43.91 ? 103 HOH A O 1 HETATM 167 O O . HOH B 2 . ? 31.601 27.011 -1.859 1.00 37.62 ? 104 HOH A O 1 HETATM 168 O O . HOH B 2 . ? 31.084 30.140 4.269 1.00 35.41 ? 105 HOH A O 1 HETATM 169 O O . HOH B 2 . ? 29.582 30.168 2.034 1.00 39.76 ? 106 HOH A O 1 HETATM 170 O O . HOH B 2 . ? 30.775 38.529 7.500 1.00 44.57 ? 107 HOH A O 1 HETATM 171 O O . HOH B 2 . ? 29.385 35.099 8.927 1.00 57.44 ? 108 HOH A O 1 HETATM 172 O O . HOH B 2 . ? 28.579 31.993 5.327 1.00 53.46 ? 109 HOH A O 1 HETATM 173 O O . HOH B 2 . ? 30.844 26.880 2.027 1.00 43.21 ? 110 HOH A O 1 HETATM 174 O O . HOH B 2 . ? 26.980 34.892 6.084 1.00 38.08 ? 111 HOH A O 1 HETATM 175 O O . HOH B 2 . ? 26.118 38.047 7.984 1.00 46.94 ? 112 HOH A O 1 HETATM 176 O O . HOH B 2 . ? 34.337 24.830 -7.317 1.00 38.18 ? 113 HOH A O 1 HETATM 177 O O . HOH B 2 . ? 31.563 23.212 -7.594 1.00 42.28 ? 114 HOH A O 1 HETATM 178 O O . HOH B 2 . ? 37.154 38.734 2.506 1.00 35.09 ? 115 HOH A O 1 HETATM 179 O O . HOH B 2 . ? 36.034 41.335 2.112 1.00 52.09 ? 116 HOH A O 1 HETATM 180 O O . HOH B 2 . ? 24.568 41.198 -0.265 1.00 48.64 ? 117 HOH A O 1 HETATM 181 O O . HOH B 2 . ? 29.556 37.812 10.692 1.00 53.51 ? 118 HOH A O 1 HETATM 182 O O . HOH B 2 . ? 38.418 38.771 4.699 1.00 43.99 ? 119 HOH A O 1 #