0.018560
0.000000
0.000000
0.000000
0.013896
0.000000
0.000000
0.000000
0.013740
0.00000
0.00000
0.00000
Luk, K.-C.
Simcox, M.E.
Schutt, A.
Rowan, K.
Thompson, T.
Chen, Y.
Kammlott, U.
DePinto, W.
Dunten, P.
Dermatakis, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
53.880
71.962
72.779
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C20 H20 F N3 O4
385.389
4-((3R,4S,5R)-4-AMINO-3,5-DIHYDROXY-HEX-1-YNYL)-5-FLUORO-3-[1-(3-METHOXY-1H-PYRROL-2-YL)-METH-(Z)-YLIDENE]-1,3-DIHYDRO-INDOL-2-ONE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
F
Y
89
N
C
Y
90
N
C
N
91
N
C
N
92
N
C
N
93
R
C
N
94
N
O
N
95
S
C
N
96
N
N
N
97
R
C
N
98
N
O
N
99
N
C
Y
100
N
C
Y
101
N
C
N
102
N
N
N
103
N
C
N
104
N
O
Y
105
N
C
Y
106
N
C
N
107
N
C
N
108
N
C
Y
109
N
C
Y
110
N
C
N
111
N
O
N
112
N
C
Y
113
N
C
Y
114
N
C
Y
115
N
N
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
N
N
137
S
C
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
C
N
142
N
C
N
143
N
O
N
144
N
N
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
S
C
N
158
N
C
N
159
N
O
N
160
N
C
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
O
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
N
N
176
N
C
N
177
N
C
N
178
N
O
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
N
C
Y
190
N
C
Y
191
N
N
Y
192
N
C
Y
193
N
C
Y
194
N
N
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
S
C
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
N
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
N
S
N
285
N
C
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
N
326
N
C
N
327
N
C
N
328
N
O
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
N
C
N
343
N
O
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
R
C
N
357
N
O
N
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
N
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
N
N
397
S
C
N
398
N
C
N
399
N
O
N
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
N
407
N
O
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
N
N
421
S
C
N
422
N
C
N
423
N
O
N
424
N
C
N
425
N
C
N
426
N
C
N
427
N
O
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
Y
84
N
doub
Y
85
N
sing
N
86
N
sing
Y
87
N
sing
N
88
N
trip
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
doub
N
107
N
sing
N
108
N
sing
Y
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
Z
doub
N
118
N
sing
N
119
N
sing
Y
120
N
doub
Y
121
N
sing
N
122
N
sing
Y
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
Y
128
N
doub
N
129
N
sing
Y
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
Y
190
N
sing
Y
191
N
doub
Y
192
N
doub
N
193
N
sing
Y
194
N
sing
N
195
N
sing
Y
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
doub
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
Y
298
N
doub
Y
299
N
sing
Y
300
N
sing
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
doub
N
305
N
sing
Y
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
doub
Y
372
N
sing
Y
373
N
sing
N
374
N
sing
Y
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
0960-894X
14
913
917
10.1016/j.bmcl.2003.12.009
15012993
A new series of potent oxindole inhibitors of CDK2
2004
10.2210/pdb1r78/pdb
pdb_00001r78
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
110
1
CCD
1999-10-06
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
0.979
1.0
X8C
NSLS
0.979
SYNCHROTRON
NSLS BEAMLINE X8C
33976.488
Cell division protein kinase 2
2.7.1.-
1
man
polymer
385.389
4-((3R,4S,5R)-4-AMINO-3,5-DIHYDROXY-HEX-1-YNYL)-5-FLUORO-3-[1-(3-METHOXY-1H-PYRROL-2-YL)-METH-(Z)-YLIDENE]-1,3-DIHYDRO-INDOL-2-ONE
1
syn
non-polymer
18.015
water
68
nat
water
p33 protein kinase
no
no
MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVF
EFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYT
HEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSF
PKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL
MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVF
EFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYT
HEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSF
PKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
fall armyworm
Spodoptera
sample
CDK2
9606
Homo sapiens
SF9
7108
Spodoptera frugiperda
PBAC2
baculovirus
1
2.08
40.73
VAPOR DIFFUSION
9
pH 9, VAPOR DIFFUSION, temperature 277K
277
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2004-01-20
1
1
2008-04-29
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
cdk2 complex with an oxindole inhibitor
cdk2 complex with a naphthostyril inhibitor
RCSB
Y
RCSB
2003-10-20
REL
FMD
4-((3R,4S,5R)-4-AMINO-3,5-DIHYDROXY-HEX-1-YNYL)-5-FLUORO-3-[1-(3-METHOXY-1H-PYRROL-2-YL)-METH-(Z)-YLIDENE]-1,3-DIHYDRO-INDOL-2-ONE
HOH
water
UNK
1
2
FMD
FMD
299
A
HOH
1
3
HOH
HOH
300
A
HOH
2
3
HOH
HOH
301
A
HOH
3
3
HOH
HOH
302
A
HOH
4
3
HOH
HOH
303
A
HOH
5
3
HOH
HOH
304
A
HOH
6
3
HOH
HOH
305
A
HOH
7
3
HOH
HOH
306
A
HOH
8
3
HOH
HOH
307
A
HOH
9
3
HOH
HOH
308
A
HOH
10
3
HOH
HOH
309
A
HOH
11
3
HOH
HOH
310
A
HOH
12
3
HOH
HOH
311
A
HOH
13
3
HOH
HOH
312
A
HOH
14
3
HOH
HOH
313
A
HOH
15
3
HOH
HOH
314
A
HOH
16
3
HOH
HOH
315
A
HOH
17
3
HOH
HOH
316
A
HOH
18
3
HOH
HOH
317
A
HOH
19
3
HOH
HOH
318
A
HOH
20
3
HOH
HOH
319
A
HOH
21
3
HOH
HOH
320
A
HOH
22
3
HOH
HOH
321
A
HOH
23
3
HOH
HOH
322
A
HOH
24
3
HOH
HOH
323
A
HOH
25
3
HOH
HOH
324
A
HOH
26
3
HOH
HOH
325
A
HOH
27
3
HOH
HOH
326
A
HOH
28
3
HOH
HOH
327
A
HOH
29
3
HOH
HOH
328
A
HOH
30
3
HOH
HOH
329
A
HOH
31
3
HOH
HOH
330
A
HOH
32
3
HOH
HOH
331
A
HOH
33
3
HOH
HOH
332
A
HOH
34
3
HOH
HOH
333
A
HOH
35
3
HOH
HOH
334
A
HOH
36
3
HOH
HOH
335
A
HOH
37
3
HOH
HOH
336
A
HOH
38
3
HOH
HOH
337
A
HOH
39
3
HOH
HOH
338
A
HOH
40
3
HOH
HOH
339
A
HOH
41
3
HOH
HOH
340
A
HOH
42
3
HOH
HOH
341
A
HOH
43
3
HOH
HOH
342
A
HOH
44
3
HOH
HOH
343
A
HOH
45
3
HOH
HOH
344
A
HOH
46
3
HOH
HOH
345
A
HOH
47
3
HOH
HOH
346
A
HOH
48
3
HOH
HOH
347
A
HOH
49
3
HOH
HOH
348
A
HOH
50
3
HOH
HOH
349
A
HOH
51
3
HOH
HOH
350
A
HOH
52
3
HOH
HOH
351
A
HOH
53
3
HOH
HOH
352
A
HOH
54
3
HOH
HOH
353
A
HOH
55
3
HOH
HOH
354
A
HOH
56
3
HOH
HOH
355
A
HOH
57
3
HOH
HOH
356
A
HOH
58
3
HOH
HOH
357
A
HOH
59
3
HOH
HOH
358
A
HOH
60
3
HOH
HOH
359
A
HOH
61
3
HOH
HOH
360
A
HOH
62
3
HOH
HOH
361
A
HOH
63
3
HOH
HOH
362
A
HOH
64
3
HOH
HOH
363
A
HOH
65
3
HOH
HOH
364
A
HOH
66
3
HOH
HOH
365
A
HOH
67
3
HOH
HOH
366
A
HOH
68
3
HOH
HOH
367
A
MET
1
n
1
MET
1
A
GLU
2
n
2
GLU
2
A
ASN
3
n
3
ASN
3
A
PHE
4
n
4
PHE
4
A
GLN
5
n
5
GLN
5
A
LYS
6
n
6
LYS
6
A
VAL
7
n
7
VAL
7
A
GLU
8
n
8
GLU
8
A
LYS
9
n
9
LYS
9
A
ILE
10
n
10
ILE
10
A
GLY
11
n
11
GLY
11
A
GLU
12
n
12
GLU
12
A
GLY
13
n
13
GLY
13
A
THR
14
n
14
THR
14
A
TYR
15
n
15
TYR
15
A
GLY
16
n
16
GLY
16
A
VAL
17
n
17
VAL
17
A
VAL
18
n
18
VAL
18
A
TYR
19
n
19
TYR
19
A
LYS
20
n
20
LYS
20
A
ALA
21
n
21
ALA
21
A
ARG
22
n
22
ARG
22
A
ASN
23
n
23
ASN
23
A
LYS
24
n
24
LYS
24
A
LEU
25
n
25
LEU
25
A
THR
26
n
26
THR
26
A
GLY
27
n
27
GLY
27
A
GLU
28
n
28
GLU
28
A
VAL
29
n
29
VAL
29
A
VAL
30
n
30
VAL
30
A
ALA
31
n
31
ALA
31
A
LEU
32
n
32
LEU
32
A
LYS
33
n
33
LYS
33
A
LYS
34
n
34
LYS
34
A
ILE
35
n
35
ILE
35
A
ARG
36
n
36
ARG
36
A
LEU
37
n
37
LEU
37
A
n
38
38
A
n
39
39
A
n
40
40
A
n
41
41
A
n
42
42
A
n
43
43
A
n
44
44
A
n
45
45
A
n
46
46
A
THR
47
n
47
THR
47
A
ALA
48
n
48
ALA
48
A
ILE
49
n
49
ILE
49
A
ARG
50
n
50
ARG
50
A
GLU
51
n
51
GLU
51
A
ILE
52
n
52
ILE
52
A
SER
53
n
53
SER
53
A
LEU
54
n
54
LEU
54
A
LEU
55
n
55
LEU
55
A
LYS
56
n
56
LYS
56
A
GLU
57
n
57
GLU
57
A
LEU
58
n
58
LEU
58
A
ASN
59
n
59
ASN
59
A
HIS
60
n
60
HIS
60
A
PRO
61
n
61
PRO
61
A
ASN
62
n
62
ASN
62
A
ILE
63
n
63
ILE
63
A
VAL
64
n
64
VAL
64
A
LYS
65
n
65
LYS
65
A
LEU
66
n
66
LEU
66
A
LEU
67
n
67
LEU
67
A
ASP
68
n
68
ASP
68
A
VAL
69
n
69
VAL
69
A
ILE
70
n
70
ILE
70
A
HIS
71
n
71
HIS
71
A
THR
72
n
72
THR
72
A
GLU
73
n
73
GLU
73
A
ASN
74
n
74
ASN
74
A
LYS
75
n
75
LYS
75
A
LEU
76
n
76
LEU
76
A
TYR
77
n
77
TYR
77
A
LEU
78
n
78
LEU
78
A
VAL
79
n
79
VAL
79
A
PHE
80
n
80
PHE
80
A
GLU
81
n
81
GLU
81
A
PHE
82
n
82
PHE
82
A
LEU
83
n
83
LEU
83
A
HIS
84
n
84
HIS
84
A
GLN
85
n
85
GLN
85
A
ASP
86
n
86
ASP
86
A
LEU
87
n
87
LEU
87
A
LYS
88
n
88
LYS
88
A
LYS
89
n
89
LYS
89
A
PHE
90
n
90
PHE
90
A
MET
91
n
91
MET
91
A
ASP
92
n
92
ASP
92
A
ALA
93
n
93
ALA
93
A
SER
94
n
94
SER
94
A
ALA
95
n
95
ALA
95
A
LEU
96
n
96
LEU
96
A
THR
97
n
97
THR
97
A
GLY
98
n
98
GLY
98
A
ILE
99
n
99
ILE
99
A
PRO
100
n
100
PRO
100
A
LEU
101
n
101
LEU
101
A
PRO
102
n
102
PRO
102
A
LEU
103
n
103
LEU
103
A
ILE
104
n
104
ILE
104
A
LYS
105
n
105
LYS
105
A
SER
106
n
106
SER
106
A
TYR
107
n
107
TYR
107
A
LEU
108
n
108
LEU
108
A
PHE
109
n
109
PHE
109
A
GLN
110
n
110
GLN
110
A
LEU
111
n
111
LEU
111
A
LEU
112
n
112
LEU
112
A
GLN
113
n
113
GLN
113
A
GLY
114
n
114
GLY
114
A
LEU
115
n
115
LEU
115
A
ALA
116
n
116
ALA
116
A
PHE
117
n
117
PHE
117
A
CYS
118
n
118
CYS
118
A
HIS
119
n
119
HIS
119
A
SER
120
n
120
SER
120
A
HIS
121
n
121
HIS
121
A
ARG
122
n
122
ARG
122
A
VAL
123
n
123
VAL
123
A
LEU
124
n
124
LEU
124
A
HIS
125
n
125
HIS
125
A
ARG
126
n
126
ARG
126
A
ASP
127
n
127
ASP
127
A
LEU
128
n
128
LEU
128
A
LYS
129
n
129
LYS
129
A
PRO
130
n
130
PRO
130
A
GLN
131
n
131
GLN
131
A
ASN
132
n
132
ASN
132
A
LEU
133
n
133
LEU
133
A
LEU
134
n
134
LEU
134
A
ILE
135
n
135
ILE
135
A
ASN
136
n
136
ASN
136
A
THR
137
n
137
THR
137
A
GLU
138
n
138
GLU
138
A
GLY
139
n
139
GLY
139
A
ALA
140
n
140
ALA
140
A
ILE
141
n
141
ILE
141
A
LYS
142
n
142
LYS
142
A
LEU
143
n
143
LEU
143
A
ALA
144
n
144
ALA
144
A
ASP
145
n
145
ASP
145
A
PHE
146
n
146
PHE
146
A
GLY
147
n
147
GLY
147
A
n
148
148
A
n
149
149
A
n
150
150
A
n
151
151
A
n
152
152
A
n
153
153
A
n
154
154
A
n
155
155
A
n
156
156
A
n
157
157
A
n
158
158
A
n
159
159
A
n
160
160
A
n
161
161
A
n
162
162
A
n
163
163
A
VAL
164
n
164
VAL
164
A
THR
165
n
165
THR
165
A
LEU
166
n
166
LEU
166
A
TRP
167
n
167
TRP
167
A
TYR
168
n
168
TYR
168
A
ARG
169
n
169
ARG
169
A
ALA
170
n
170
ALA
170
A
PRO
171
n
171
PRO
171
A
GLU
172
n
172
GLU
172
A
ILE
173
n
173
ILE
173
A
LEU
174
n
174
LEU
174
A
LEU
175
n
175
LEU
175
A
GLY
176
n
176
GLY
176
A
CYS
177
n
177
CYS
177
A
LYS
178
n
178
LYS
178
A
TYR
179
n
179
TYR
179
A
TYR
180
n
180
TYR
180
A
SER
181
n
181
SER
181
A
THR
182
n
182
THR
182
A
ALA
183
n
183
ALA
183
A
VAL
184
n
184
VAL
184
A
ASP
185
n
185
ASP
185
A
ILE
186
n
186
ILE
186
A
TRP
187
n
187
TRP
187
A
SER
188
n
188
SER
188
A
LEU
189
n
189
LEU
189
A
GLY
190
n
190
GLY
190
A
CYS
191
n
191
CYS
191
A
ILE
192
n
192
ILE
192
A
PHE
193
n
193
PHE
193
A
ALA
194
n
194
ALA
194
A
GLU
195
n
195
GLU
195
A
MET
196
n
196
MET
196
A
VAL
197
n
197
VAL
197
A
THR
198
n
198
THR
198
A
ARG
199
n
199
ARG
199
A
ARG
200
n
200
ARG
200
A
ALA
201
n
201
ALA
201
A
LEU
202
n
202
LEU
202
A
PHE
203
n
203
PHE
203
A
PRO
204
n
204
PRO
204
A
GLY
205
n
205
GLY
205
A
ASP
206
n
206
ASP
206
A
SER
207
n
207
SER
207
A
GLU
208
n
208
GLU
208
A
ILE
209
n
209
ILE
209
A
ASP
210
n
210
ASP
210
A
GLN
211
n
211
GLN
211
A
LEU
212
n
212
LEU
212
A
PHE
213
n
213
PHE
213
A
ARG
214
n
214
ARG
214
A
ILE
215
n
215
ILE
215
A
PHE
216
n
216
PHE
216
A
ARG
217
n
217
ARG
217
A
THR
218
n
218
THR
218
A
LEU
219
n
219
LEU
219
A
GLY
220
n
220
GLY
220
A
THR
221
n
221
THR
221
A
PRO
222
n
222
PRO
222
A
ASP
223
n
223
ASP
223
A
GLU
224
n
224
GLU
224
A
VAL
225
n
225
VAL
225
A
VAL
226
n
226
VAL
226
A
TRP
227
n
227
TRP
227
A
PRO
228
n
228
PRO
228
A
GLY
229
n
229
GLY
229
A
VAL
230
n
230
VAL
230
A
THR
231
n
231
THR
231
A
SER
232
n
232
SER
232
A
MET
233
n
233
MET
233
A
PRO
234
n
234
PRO
234
A
ASP
235
n
235
ASP
235
A
TYR
236
n
236
TYR
236
A
LYS
237
n
237
LYS
237
A
PRO
238
n
238
PRO
238
A
SER
239
n
239
SER
239
A
PHE
240
n
240
PHE
240
A
PRO
241
n
241
PRO
241
A
LYS
242
n
242
LYS
242
A
TRP
243
n
243
TRP
243
A
ALA
244
n
244
ALA
244
A
ARG
245
n
245
ARG
245
A
GLN
246
n
246
GLN
246
A
ASP
247
n
247
ASP
247
A
PHE
248
n
248
PHE
248
A
SER
249
n
249
SER
249
A
LYS
250
n
250
LYS
250
A
VAL
251
n
251
VAL
251
A
VAL
252
n
252
VAL
252
A
PRO
253
n
253
PRO
253
A
PRO
254
n
254
PRO
254
A
LEU
255
n
255
LEU
255
A
ASP
256
n
256
ASP
256
A
GLU
257
n
257
GLU
257
A
ASP
258
n
258
ASP
258
A
GLY
259
n
259
GLY
259
A
ARG
260
n
260
ARG
260
A
SER
261
n
261
SER
261
A
LEU
262
n
262
LEU
262
A
LEU
263
n
263
LEU
263
A
SER
264
n
264
SER
264
A
GLN
265
n
265
GLN
265
A
MET
266
n
266
MET
266
A
LEU
267
n
267
LEU
267
A
HIS
268
n
268
HIS
268
A
TYR
269
n
269
TYR
269
A
ASP
270
n
270
ASP
270
A
PRO
271
n
271
PRO
271
A
ASN
272
n
272
ASN
272
A
LYS
273
n
273
LYS
273
A
ARG
274
n
274
ARG
274
A
ILE
275
n
275
ILE
275
A
SER
276
n
276
SER
276
A
ALA
277
n
277
ALA
277
A
LYS
278
n
278
LYS
278
A
ALA
279
n
279
ALA
279
A
ALA
280
n
280
ALA
280
A
LEU
281
n
281
LEU
281
A
ALA
282
n
282
ALA
282
A
HIS
283
n
283
HIS
283
A
PRO
284
n
284
PRO
284
A
PHE
285
n
285
PHE
285
A
PHE
286
n
286
PHE
286
A
GLN
287
n
287
GLN
287
A
ASP
288
n
288
ASP
288
A
VAL
289
n
289
VAL
289
A
THR
290
n
290
THR
290
A
LYS
291
n
291
LYS
291
A
PRO
292
n
292
PRO
292
A
VAL
293
n
293
VAL
293
A
PRO
294
n
294
PRO
294
A
HIS
295
n
295
HIS
295
A
LEU
296
n
296
LEU
296
A
ARG
297
n
297
ARG
297
A
LEU
298
n
298
LEU
298
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
8
A
N
GLU
8
A
O
LYS
20
A
O
LYS
20
A
N
TYR
19
A
N
TYR
19
A
O
LEU
32
A
O
LEU
32
A
N
ALA
31
A
N
ALA
31
A
O
PHE
80
A
O
PHE
80
A
O
VAL
79
A
O
VAL
79
A
N
ASP
68
A
N
ASP
68
A
N
GLN
85
A
N
GLN
85
A
O
ILE
135
A
O
ILE
135
A
N
LEU
134
A
N
LEU
134
A
O
LYS
142
A
O
LYS
142
1
A
ASP
38
A
ASP
38
1
Y
1
A
THR
39
A
THR
39
1
Y
1
A
GLU
40
A
GLU
40
1
Y
1
A
THR
41
A
THR
41
1
Y
1
A
GLU
42
A
GLU
42
1
Y
1
A
GLY
43
A
GLY
43
1
Y
1
A
VAL
44
A
VAL
44
1
Y
1
A
PRO
45
A
PRO
45
1
Y
1
A
SER
46
A
SER
46
1
Y
1
A
LEU
148
A
LEU
148
1
Y
1
A
ALA
149
A
ALA
149
1
Y
1
A
ARG
150
A
ARG
150
1
Y
1
A
ALA
151
A
ALA
151
1
Y
1
A
PHE
152
A
PHE
152
1
Y
1
A
GLY
153
A
GLY
153
1
Y
1
A
VAL
154
A
VAL
154
1
Y
1
A
PRO
155
A
PRO
155
1
Y
1
A
VAL
156
A
VAL
156
1
Y
1
A
ARG
157
A
ARG
157
1
Y
1
A
THR
158
A
THR
158
1
Y
1
A
TYR
159
A
TYR
159
1
Y
1
A
THR
160
A
THR
160
1
Y
1
A
HIS
161
A
HIS
161
1
Y
1
A
GLU
162
A
GLU
162
1
Y
1
A
VAL
163
A
VAL
163
1
Y
1
14.05
2.30
115.30
129.35
A
A
A
CA
CB
CG
LEU
LEU
LEU
124
124
124
N
1
5.43
0.90
118.30
123.73
A
A
A
CB
CG
OD2
ASP
ASP
ASP
210
210
210
N
1
A
GLU
73
94.66
-152.46
1
A
ASN
74
-81.93
32.23
1
A
ARG
126
81.95
-22.67
1
A
ASP
127
-145.09
45.04
21.889
-0.31
0.00
0.00
-1.00
0.00
1.31
0.922
0.883
0.26247
0.21772
0.21999
2.00
51.30
934
18512
5.0
93.39
4.407
0.125
RANDOM
1
THROUGHOUT
rigid body refinement
0.238
0.198
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.00
51.30
68
2309
28
0
2213
0.010
0.022
2298
1.243
1.983
3114
5.427
5.000
270
0.085
0.200
349
0.004
0.020
1704
0.194
0.200
1016
0.124
0.200
95
0.148
0.200
42
0.178
0.200
10
0.733
1.500
1367
1.357
2.000
2219
1.735
3.000
931
2.920
4.500
895
0.267
0.215
2.048
46
877
923
20
18.9
2.0
30.0
1R78
18512
18512
0.036
1
3.3
93.6
0.05
2.00
2.07
69.1
refinement
REFMAC
5.1.24
data reduction
DENZO
data scaling
SCALEPACK
CDK2 complex with a 4-alkynyl oxindole inhibitor
1
N
N
2
N
N
3
N
N
A
THR
47
A
THR
47
HELX_P
A
LYS
56
A
LYS
56
1
1
10
A
LEU
87
A
LEU
87
HELX_P
A
SER
94
A
SER
94
1
2
8
A
PRO
100
A
PRO
100
HELX_P
A
HIS
121
A
HIS
121
1
3
22
A
LYS
129
A
LYS
129
HELX_P
A
GLN
131
A
GLN
131
5
4
3
A
ALA
170
A
ALA
170
HELX_P
A
LEU
175
A
LEU
175
1
5
6
A
THR
182
A
THR
182
HELX_P
A
ARG
199
A
ARG
199
1
6
18
A
SER
207
A
SER
207
HELX_P
A
GLY
220
A
GLY
220
1
7
14
A
GLY
229
A
GLY
229
HELX_P
A
MET
233
A
MET
233
5
8
5
A
ASP
247
A
ASP
247
HELX_P
A
VAL
251
A
VAL
251
5
9
5
A
ASP
256
A
ASP
256
HELX_P
A
LEU
267
A
LEU
267
1
10
12
A
SER
276
A
SER
276
HELX_P
A
LEU
281
A
LEU
281
1
11
6
A
ALA
282
A
ALA
282
HELX_P
A
GLN
287
A
GLN
287
5
12
6
TRANSFERASE
cyclin dependent kinase, serine/threonine protein kinase, oxindole, TRANSFERASE
A
PRO
253
A
PRO
253
1
A
PRO
254
A
PRO
254
7.35
CDK2_HUMAN
UNP
1
1
P24941
MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVF
EFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYT
HEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSF
PKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL
1
298
1R78
1
298
P24941
A
1
1
298
5
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
4
A
PHE
4
A
GLU
12
A
GLU
12
A
GLY
16
A
GLY
16
A
ASN
23
A
ASN
23
A
VAL
29
A
VAL
29
A
ILE
35
A
ILE
35
A
LEU
76
A
LEU
76
A
GLU
81
A
GLU
81
A
LEU
66
A
LEU
66
A
HIS
71
A
HIS
71
A
GLN
85
A
GLN
85
A
ASP
86
A
ASP
86
A
LEU
133
A
LEU
133
A
ILE
135
A
ILE
135
A
ILE
141
A
ILE
141
A
LEU
143
A
LEU
143
BINDING SITE FOR RESIDUE FMD A 299
A
FMD
299
Software
13
A
ILE
10
A
ILE
10
13
1_555
A
GLY
11
A
GLY
11
13
1_555
A
GLU
12
A
GLU
12
13
1_555
A
VAL
18
A
VAL
18
13
1_555
A
ALA
31
A
ALA
31
13
1_555
A
PHE
80
A
PHE
80
13
1_555
A
GLU
81
A
GLU
81
13
1_555
A
PHE
82
A
PHE
82
13
1_555
A
LEU
83
A
LEU
83
13
1_555
A
GLN
131
A
GLN
131
13
1_555
A
ASN
132
A
ASN
132
13
1_555
A
LEU
134
A
LEU
134
13
1_555
A
ASP
145
A
ASP
145
13
1_555
19
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