1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Patzelt, H.
Simon, B.
Ter Laak, A.
Kessler, B.
Kuhne, R.
Schmieder, P.
Oesterhaelt, D.
Oschkinat, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C20 H28 O
284.436
RETINAL
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
99
9765
9770
10.1073/pnas.132253899
12119389
The structures of the active center in dark-adapted bacteriorhodopsin by solution-state NMR spectroscopy
2002
10.2210/pdb1r84/pdb
pdb_00001r84
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
25431.029
Bacteriorhodopsin
residues 1-232
1
nat
polymer
284.436
RETINAL
1
syn
non-polymer
18.015
water
4
nat
water
BR
no
no
QAQITGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYW
ARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKA
ESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFGE
QAQITGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYW
ARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKA
ESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFGE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Halobacterium
sample
2242
Halobacterium salinarum
R1
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-11-11
1
1
2008-04-29
1
2
2011-07-13
1
3
2022-03-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
PDBJ
2003-10-23
REL
REL
RET
RETINAL
HOH
water
rmsd between observed and calulated chemical shifts
100
12
2D NOESY
2D NOESY
2D NOESY
1
6.5
1
atm
308
K
1
6.5
1
atm
313
K
1
6.5
1
atm
318
K
the structure was also refined with SHIFTS (Author; Case, D)
simulated annealing
1
lowest rmsd of observed and calculated chemical shifts
residue specifically labeled purple membrane (12-20mg bacteriorhodopsin) suspended in 1% deuterated dodecal maltoside, 10mm potassium phosphate buffer in D2O
10mm potassium phosphate buffer in D2O
Bruker AG
processing
XwinNMR
2.6
Kollman, P.
refinement
Amber
4.1
800
Bruker
DRX
750
Bruker
DMX
RET
999
2
RET
RET
999
A
WAT
233
3
HOH
HOH
233
A
WAT
234
3
HOH
HOH
234
A
WAT
235
3
HOH
HOH
235
A
WAT
236
3
HOH
HOH
236
A
GLN
1
n
1
GLN
1
A
ALA
2
n
2
ALA
2
A
GLN
3
n
3
GLN
3
A
ILE
4
n
4
ILE
4
A
THR
5
n
5
THR
5
A
GLY
6
n
6
GLY
6
A
ARG
7
n
7
ARG
7
A
PRO
8
n
8
PRO
8
A
GLU
9
n
9
GLU
9
A
TRP
10
n
10
TRP
10
A
ILE
11
n
11
ILE
11
A
TRP
12
n
12
TRP
12
A
LEU
13
n
13
LEU
13
A
ALA
14
n
14
ALA
14
A
LEU
15
n
15
LEU
15
A
GLY
16
n
16
GLY
16
A
THR
17
n
17
THR
17
A
ALA
18
n
18
ALA
18
A
LEU
19
n
19
LEU
19
A
MET
20
n
20
MET
20
A
GLY
21
n
21
GLY
21
A
LEU
22
n
22
LEU
22
A
GLY
23
n
23
GLY
23
A
THR
24
n
24
THR
24
A
LEU
25
n
25
LEU
25
A
TYR
26
n
26
TYR
26
A
PHE
27
n
27
PHE
27
A
LEU
28
n
28
LEU
28
A
VAL
29
n
29
VAL
29
A
LYS
30
n
30
LYS
30
A
GLY
31
n
31
GLY
31
A
MET
32
n
32
MET
32
A
GLY
33
n
33
GLY
33
A
VAL
34
n
34
VAL
34
A
SER
35
n
35
SER
35
A
ASP
36
n
36
ASP
36
A
PRO
37
n
37
PRO
37
A
ASP
38
n
38
ASP
38
A
ALA
39
n
39
ALA
39
A
LYS
40
n
40
LYS
40
A
LYS
41
n
41
LYS
41
A
PHE
42
n
42
PHE
42
A
TYR
43
n
43
TYR
43
A
ALA
44
n
44
ALA
44
A
ILE
45
n
45
ILE
45
A
THR
46
n
46
THR
46
A
THR
47
n
47
THR
47
A
LEU
48
n
48
LEU
48
A
VAL
49
n
49
VAL
49
A
PRO
50
n
50
PRO
50
A
ALA
51
n
51
ALA
51
A
ILE
52
n
52
ILE
52
A
ALA
53
n
53
ALA
53
A
PHE
54
n
54
PHE
54
A
THR
55
n
55
THR
55
A
MET
56
n
56
MET
56
A
TYR
57
n
57
TYR
57
A
LEU
58
n
58
LEU
58
A
SER
59
n
59
SER
59
A
MET
60
n
60
MET
60
A
LEU
61
n
61
LEU
61
A
LEU
62
n
62
LEU
62
A
GLY
63
n
63
GLY
63
A
TYR
64
n
64
TYR
64
A
GLY
65
n
65
GLY
65
A
LEU
66
n
66
LEU
66
A
THR
67
n
67
THR
67
A
MET
68
n
68
MET
68
A
VAL
69
n
69
VAL
69
A
PRO
70
n
70
PRO
70
A
PHE
71
n
71
PHE
71
A
GLY
72
n
72
GLY
72
A
GLY
73
n
73
GLY
73
A
GLU
74
n
74
GLU
74
A
GLN
75
n
75
GLN
75
A
ASN
76
n
76
ASN
76
A
PRO
77
n
77
PRO
77
A
ILE
78
n
78
ILE
78
A
TYR
79
n
79
TYR
79
A
TRP
80
n
80
TRP
80
A
ALA
81
n
81
ALA
81
A
ARG
82
n
82
ARG
82
A
TYR
83
n
83
TYR
83
A
ALA
84
n
84
ALA
84
A
ASP
85
n
85
ASP
85
A
TRP
86
n
86
TRP
86
A
LEU
87
n
87
LEU
87
A
PHE
88
n
88
PHE
88
A
THR
89
n
89
THR
89
A
THR
90
n
90
THR
90
A
PRO
91
n
91
PRO
91
A
LEU
92
n
92
LEU
92
A
LEU
93
n
93
LEU
93
A
LEU
94
n
94
LEU
94
A
LEU
95
n
95
LEU
95
A
ASP
96
n
96
ASP
96
A
LEU
97
n
97
LEU
97
A
ALA
98
n
98
ALA
98
A
LEU
99
n
99
LEU
99
A
LEU
100
n
100
LEU
100
A
VAL
101
n
101
VAL
101
A
ASP
102
n
102
ASP
102
A
ALA
103
n
103
ALA
103
A
ASP
104
n
104
ASP
104
A
GLN
105
n
105
GLN
105
A
GLY
106
n
106
GLY
106
A
THR
107
n
107
THR
107
A
ILE
108
n
108
ILE
108
A
LEU
109
n
109
LEU
109
A
ALA
110
n
110
ALA
110
A
LEU
111
n
111
LEU
111
A
VAL
112
n
112
VAL
112
A
GLY
113
n
113
GLY
113
A
ALA
114
n
114
ALA
114
A
ASP
115
n
115
ASP
115
A
GLY
116
n
116
GLY
116
A
ILE
117
n
117
ILE
117
A
MET
118
n
118
MET
118
A
ILE
119
n
119
ILE
119
A
GLY
120
n
120
GLY
120
A
THR
121
n
121
THR
121
A
GLY
122
n
122
GLY
122
A
LEU
123
n
123
LEU
123
A
VAL
124
n
124
VAL
124
A
GLY
125
n
125
GLY
125
A
ALA
126
n
126
ALA
126
A
LEU
127
n
127
LEU
127
A
THR
128
n
128
THR
128
A
LYS
129
n
129
LYS
129
A
VAL
130
n
130
VAL
130
A
TYR
131
n
131
TYR
131
A
SER
132
n
132
SER
132
A
TYR
133
n
133
TYR
133
A
ARG
134
n
134
ARG
134
A
PHE
135
n
135
PHE
135
A
VAL
136
n
136
VAL
136
A
TRP
137
n
137
TRP
137
A
TRP
138
n
138
TRP
138
A
ALA
139
n
139
ALA
139
A
ILE
140
n
140
ILE
140
A
SER
141
n
141
SER
141
A
THR
142
n
142
THR
142
A
ALA
143
n
143
ALA
143
A
ALA
144
n
144
ALA
144
A
MET
145
n
145
MET
145
A
LEU
146
n
146
LEU
146
A
TYR
147
n
147
TYR
147
A
ILE
148
n
148
ILE
148
A
LEU
149
n
149
LEU
149
A
TYR
150
n
150
TYR
150
A
VAL
151
n
151
VAL
151
A
LEU
152
n
152
LEU
152
A
PHE
153
n
153
PHE
153
A
PHE
154
n
154
PHE
154
A
GLY
155
n
155
GLY
155
A
PHE
156
n
156
PHE
156
A
THR
157
n
157
THR
157
A
SER
158
n
158
SER
158
A
LYS
159
n
159
LYS
159
A
ALA
160
n
160
ALA
160
A
GLU
161
n
161
GLU
161
A
SER
162
n
162
SER
162
A
MET
163
n
163
MET
163
A
ARG
164
n
164
ARG
164
A
PRO
165
n
165
PRO
165
A
GLU
166
n
166
GLU
166
A
VAL
167
n
167
VAL
167
A
ALA
168
n
168
ALA
168
A
SER
169
n
169
SER
169
A
THR
170
n
170
THR
170
A
PHE
171
n
171
PHE
171
A
LYS
172
n
172
LYS
172
A
VAL
173
n
173
VAL
173
A
LEU
174
n
174
LEU
174
A
ARG
175
n
175
ARG
175
A
ASN
176
n
176
ASN
176
A
VAL
177
n
177
VAL
177
A
THR
178
n
178
THR
178
A
VAL
179
n
179
VAL
179
A
VAL
180
n
180
VAL
180
A
LEU
181
n
181
LEU
181
A
TRP
182
n
182
TRP
182
A
SER
183
n
183
SER
183
A
ALA
184
n
184
ALA
184
A
TYR
185
n
185
TYR
185
A
PRO
186
n
186
PRO
186
A
VAL
187
n
187
VAL
187
A
VAL
188
n
188
VAL
188
A
TRP
189
n
189
TRP
189
A
LEU
190
n
190
LEU
190
A
ILE
191
n
191
ILE
191
A
GLY
192
n
192
GLY
192
A
SER
193
n
193
SER
193
A
GLU
194
n
194
GLU
194
A
GLY
195
n
195
GLY
195
A
ALA
196
n
196
ALA
196
A
GLY
197
n
197
GLY
197
A
ILE
198
n
198
ILE
198
A
VAL
199
n
199
VAL
199
A
PRO
200
n
200
PRO
200
A
LEU
201
n
201
LEU
201
A
ASN
202
n
202
ASN
202
A
ILE
203
n
203
ILE
203
A
GLU
204
n
204
GLU
204
A
THR
205
n
205
THR
205
A
LEU
206
n
206
LEU
206
A
LEU
207
n
207
LEU
207
A
PHE
208
n
208
PHE
208
A
MET
209
n
209
MET
209
A
VAL
210
n
210
VAL
210
A
LEU
211
n
211
LEU
211
A
ASP
212
n
212
ASP
212
A
VAL
213
n
213
VAL
213
A
SER
214
n
214
SER
214
A
ALA
215
n
215
ALA
215
A
LYS
216
n
216
LYS
216
A
VAL
217
n
217
VAL
217
A
GLY
218
n
218
GLY
218
A
PHE
219
n
219
PHE
219
A
GLY
220
n
220
GLY
220
A
LEU
221
n
221
LEU
221
A
ILE
222
n
222
ILE
222
A
LEU
223
n
223
LEU
223
A
LEU
224
n
224
LEU
224
A
ARG
225
n
225
ARG
225
A
SER
226
n
226
SER
226
A
ARG
227
n
227
ARG
227
A
ALA
228
n
228
ALA
228
A
ILE
229
n
229
ILE
229
A
PHE
230
n
230
PHE
230
A
GLY
231
n
231
GLY
231
A
ALA
232
n
232
GLU
232
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
67
A
N
THR
67
A
O
ILE
78
A
O
ILE
78
1
A
CG
GLU
232
A
CG
GLU
232
1
Y
1
A
CD
GLU
232
A
CD
GLU
232
1
Y
1
A
OE1
GLU
232
A
OE1
GLU
232
1
Y
1
A
OE2
GLU
232
A
OE2
GLU
232
1
Y
2
A
CG
GLU
232
A
CG
GLU
232
1
Y
2
A
CD
GLU
232
A
CD
GLU
232
1
Y
2
A
OE1
GLU
232
A
OE1
GLU
232
1
Y
2
A
OE2
GLU
232
A
OE2
GLU
232
1
Y
3
A
CG
GLU
232
A
CG
GLU
232
1
Y
3
A
CD
GLU
232
A
CD
GLU
232
1
Y
3
A
OE1
GLU
232
A
OE1
GLU
232
1
Y
3
A
OE2
GLU
232
A
OE2
GLU
232
1
Y
4
A
CG
GLU
232
A
CG
GLU
232
1
Y
4
A
CD
GLU
232
A
CD
GLU
232
1
Y
4
A
OE1
GLU
232
A
OE1
GLU
232
1
Y
4
A
OE2
GLU
232
A
OE2
GLU
232
1
Y
5
A
CG
GLU
232
A
CG
GLU
232
1
Y
5
A
CD
GLU
232
A
CD
GLU
232
1
Y
5
A
OE1
GLU
232
A
OE1
GLU
232
1
Y
5
A
OE2
GLU
232
A
OE2
GLU
232
1
Y
6
A
CG
GLU
232
A
CG
GLU
232
1
Y
6
A
CD
GLU
232
A
CD
GLU
232
1
Y
6
A
OE1
GLU
232
A
OE1
GLU
232
1
Y
6
A
OE2
GLU
232
A
OE2
GLU
232
1
Y
7
A
CG
GLU
232
A
CG
GLU
232
1
Y
7
A
CD
GLU
232
A
CD
GLU
232
1
Y
7
A
OE1
GLU
232
A
OE1
GLU
232
1
Y
7
A
OE2
GLU
232
A
OE2
GLU
232
1
Y
8
A
CG
GLU
232
A
CG
GLU
232
1
Y
8
A
CD
GLU
232
A
CD
GLU
232
1
Y
8
A
OE1
GLU
232
A
OE1
GLU
232
1
Y
8
A
OE2
GLU
232
A
OE2
GLU
232
1
Y
9
A
CG
GLU
232
A
CG
GLU
232
1
Y
9
A
CD
GLU
232
A
CD
GLU
232
1
Y
9
A
OE1
GLU
232
A
OE1
GLU
232
1
Y
9
A
OE2
GLU
232
A
OE2
GLU
232
1
Y
10
A
CG
GLU
232
A
CG
GLU
232
1
Y
10
A
CD
GLU
232
A
CD
GLU
232
1
Y
10
A
OE1
GLU
232
A
OE1
GLU
232
1
Y
10
A
OE2
GLU
232
A
OE2
GLU
232
1
Y
11
A
CG
GLU
232
A
CG
GLU
232
1
Y
11
A
CD
GLU
232
A
CD
GLU
232
1
Y
11
A
OE1
GLU
232
A
OE1
GLU
232
1
Y
11
A
OE2
GLU
232
A
OE2
GLU
232
1
Y
12
A
CG
GLU
232
A
CG
GLU
232
1
Y
12
A
CD
GLU
232
A
CD
GLU
232
1
Y
12
A
OE1
GLU
232
A
OE1
GLU
232
1
Y
12
A
OE2
GLU
232
A
OE2
GLU
232
1
Y
1
A
A
OE2
H1
GLU
HOH
204
233
1.58
2
A
A
OE1
H1
GLU
HOH
204
233
1.56
2
A
A
OD2
H1
ASP
HOH
85
234
1.57
3
A
A
OD2
H1
ASP
HOH
85
236
1.51
3
A
A
HH
OD2
TYR
ASP
57
212
1.60
4
A
A
OD2
H2
ASP
HOH
85
234
1.60
5
A
A
OD2
H2
ASP
HOH
85
234
1.58
5
A
A
HH
OD2
TYR
ASP
57
212
1.59
6
A
A
OD2
H2
ASP
HOH
85
234
1.53
6
A
A
HH
OD2
TYR
ASP
57
212
1.59
7
A
A
OD2
H2
ASP
HOH
85
234
1.56
7
A
A
OE2
H2
GLU
HOH
204
233
1.57
8
A
A
OD2
H1
ASP
HOH
85
234
1.53
8
A
A
HH
OD2
TYR
ASP
57
212
1.59
9
A
A
OD2
H1
ASP
HOH
85
234
1.51
9
A
A
OE2
H2
GLU
HOH
194
235
1.60
10
A
A
OD2
H2
ASP
HOH
85
236
1.51
10
A
A
OE2
H1
GLU
HOH
194
235
1.59
11
A
A
OD2
H1
ASP
HOH
85
234
1.55
11
A
A
HH
OD2
TYR
ASP
57
212
1.59
11
A
A
OE2
H2
GLU
HOH
204
235
1.60
1
A
ARG
7
0.097
SIDE CHAIN
1
A
TYR
43
0.125
SIDE CHAIN
1
A
ASP
96
0.085
SIDE CHAIN
1
A
ASP
115
0.092
SIDE CHAIN
2
A
ARG
7
0.097
SIDE CHAIN
2
A
TYR
43
0.125
SIDE CHAIN
2
A
ASP
96
0.085
SIDE CHAIN
3
A
ARG
7
0.097
SIDE CHAIN
3
A
TYR
43
0.125
SIDE CHAIN
3
A
ASP
96
0.085
SIDE CHAIN
4
A
ARG
7
0.097
SIDE CHAIN
4
A
TYR
43
0.125
SIDE CHAIN
4
A
TYR
83
0.073
SIDE CHAIN
4
A
ASP
96
0.085
SIDE CHAIN
4
A
ASP
115
0.075
SIDE CHAIN
5
A
ARG
7
0.097
SIDE CHAIN
5
A
TYR
43
0.125
SIDE CHAIN
5
A
TYR
83
0.069
SIDE CHAIN
5
A
ASP
96
0.085
SIDE CHAIN
6
A
ARG
7
0.097
SIDE CHAIN
6
A
TYR
43
0.125
SIDE CHAIN
6
A
ASP
96
0.085
SIDE CHAIN
7
A
ARG
7
0.097
SIDE CHAIN
7
A
TYR
43
0.125
SIDE CHAIN
7
A
ASP
96
0.086
SIDE CHAIN
8
A
ARG
7
0.098
SIDE CHAIN
8
A
TYR
43
0.125
SIDE CHAIN
8
A
TYR
83
0.071
SIDE CHAIN
8
A
ASP
96
0.085
SIDE CHAIN
9
A
ARG
7
0.097
SIDE CHAIN
9
A
TYR
43
0.125
SIDE CHAIN
9
A
ASP
96
0.085
SIDE CHAIN
9
A
ASP
115
0.091
SIDE CHAIN
10
A
ARG
7
0.097
SIDE CHAIN
10
A
TYR
43
0.125
SIDE CHAIN
10
A
ASP
96
0.086
SIDE CHAIN
10
A
ASP
115
0.085
SIDE CHAIN
11
A
ARG
7
0.097
SIDE CHAIN
11
A
TYR
43
0.125
SIDE CHAIN
11
A
ASP
96
0.085
SIDE CHAIN
12
A
ARG
7
0.097
SIDE CHAIN
12
A
TYR
43
0.125
SIDE CHAIN
12
A
ASP
96
0.085
SIDE CHAIN
1
4.00
0.50
120.30
124.30
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
82
82
82
N
1
3.35
0.50
120.30
123.65
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
225
225
225
N
1
12.65
2.00
110.40
123.05
A
A
A
CB
CA
C
PHE
PHE
PHE
230
230
230
N
2
3.28
0.50
120.30
123.58
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
225
225
225
N
2
12.66
2.00
110.40
123.06
A
A
A
CB
CA
C
PHE
PHE
PHE
230
230
230
N
3
3.29
0.50
120.30
123.59
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
225
225
225
N
3
12.61
2.00
110.40
123.01
A
A
A
CB
CA
C
PHE
PHE
PHE
230
230
230
N
4
3.30
0.50
120.30
123.60
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
225
225
225
N
4
12.64
2.00
110.40
123.04
A
A
A
CB
CA
C
PHE
PHE
PHE
230
230
230
N
5
3.31
0.50
120.30
123.61
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
82
82
82
N
5
3.33
0.50
120.30
123.63
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
225
225
225
N
5
12.62
2.00
110.40
123.02
A
A
A
CB
CA
C
PHE
PHE
PHE
230
230
230
N
6
3.36
0.50
120.30
123.66
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
225
225
225
N
6
12.66
2.00
110.40
123.06
A
A
A
CB
CA
C
PHE
PHE
PHE
230
230
230
N
7
3.33
0.50
120.30
123.63
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
225
225
225
N
7
12.68
2.00
110.40
123.08
A
A
A
CB
CA
C
PHE
PHE
PHE
230
230
230
N
8
3.27
0.50
120.30
123.57
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
225
225
225
N
8
12.68
2.00
110.40
123.08
A
A
A
CB
CA
C
PHE
PHE
PHE
230
230
230
N
9
3.32
0.50
120.30
123.62
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
225
225
225
N
9
12.66
2.00
110.40
123.06
A
A
A
CB
CA
C
PHE
PHE
PHE
230
230
230
N
10
3.30
0.50
120.30
123.60
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
225
225
225
N
10
12.60
2.00
110.40
123.00
A
A
A
CB
CA
C
PHE
PHE
PHE
230
230
230
N
11
3.17
0.50
120.30
123.47
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
82
82
82
N
11
3.32
0.50
120.30
123.62
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
225
225
225
N
11
12.65
2.00
110.40
123.05
A
A
A
CB
CA
C
PHE
PHE
PHE
230
230
230
N
12
3.31
0.50
120.30
123.61
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
225
225
225
N
12
12.64
2.00
110.40
123.04
A
A
A
CB
CA
C
PHE
PHE
PHE
230
230
230
N
1
A
ALA
2
23.29
91.88
1
A
GLN
3
28.67
65.05
1
A
ARG
7
-158.54
-51.35
1
A
GLU
9
-67.14
4.32
1
A
VAL
29
-76.38
40.96
1
A
LYS
30
-140.84
-44.91
1
A
VAL
34
33.01
88.81
1
A
PHE
153
-77.04
-70.26
1
A
MET
163
-91.94
-92.62
1
A
LYS
216
-130.14
-68.76
1
A
ILE
229
40.10
102.31
1
A
PHE
230
71.81
-55.42
2
A
ALA
2
23.43
91.87
2
A
GLN
3
28.63
65.04
2
A
ARG
7
-158.59
-51.27
2
A
GLU
9
-67.28
4.34
2
A
VAL
29
-76.43
41.04
2
A
LYS
30
-140.90
-44.80
2
A
VAL
34
33.07
88.75
2
A
PHE
153
-76.92
-70.40
2
A
MET
163
-91.95
-92.63
2
A
LYS
216
-128.11
-74.16
2
A
ILE
229
40.06
102.31
2
A
PHE
230
71.82
-55.40
3
A
ALA
2
23.34
91.91
3
A
GLN
3
28.59
65.04
3
A
ARG
7
-158.54
-51.30
3
A
GLU
9
-67.25
4.34
3
A
VAL
29
-76.37
40.94
3
A
LYS
30
-140.87
-44.86
3
A
VAL
34
32.96
88.81
3
A
ASP
85
-52.56
-70.76
3
A
PHE
153
-76.97
-70.34
3
A
MET
163
-91.89
-92.61
3
A
LYS
216
-100.14
-71.74
3
A
ILE
229
40.10
102.30
3
A
PHE
230
71.77
-55.37
4
A
ALA
2
23.42
91.80
4
A
GLN
3
28.66
65.07
4
A
ARG
7
-158.57
-51.36
4
A
GLU
9
-67.15
4.32
4
A
VAL
29
-76.38
40.96
4
A
LYS
30
-140.88
-44.84
4
A
VAL
34
32.98
88.83
4
A
ASP
85
-53.76
-70.56
4
A
PHE
153
-76.98
-70.32
4
A
MET
163
-91.93
-92.63
4
A
LYS
216
-85.75
-72.16
4
A
ILE
229
40.16
102.26
4
A
PHE
230
71.85
-55.43
5
A
ALA
2
23.37
91.90
5
A
GLN
3
28.65
65.06
5
A
ARG
7
-158.62
-51.32
5
A
GLU
9
-67.19
4.31
5
A
VAL
29
-76.38
40.99
5
A
LYS
30
-140.90
-44.85
5
A
VAL
34
32.98
88.83
5
A
PHE
153
-76.99
-70.31
5
A
MET
163
-91.89
-92.63
5
A
LYS
216
-92.65
-74.16
5
A
ILE
229
40.16
102.22
5
A
PHE
230
71.82
-55.41
6
A
ALA
2
23.51
91.83
6
A
GLN
3
28.63
65.10
6
A
ARG
7
-158.55
-51.36
6
A
GLU
9
-67.23
4.37
6
A
VAL
29
-76.37
40.95
6
A
LYS
30
-140.82
-44.92
6
A
VAL
34
33.04
88.74
6
A
ASP
85
-56.92
-70.82
6
A
PHE
153
-76.99
-70.32
6
A
MET
163
-91.86
-92.68
6
A
LYS
216
-101.30
-69.21
6
A
ILE
229
40.12
102.22
6
A
PHE
230
71.91
-55.46
7
A
ALA
2
23.42
91.85
7
A
GLN
3
28.63
65.07
7
A
ARG
7
-158.58
-51.38
7
A
GLU
9
-67.21
4.31
7
A
VAL
29
-76.43
40.97
7
A
LYS
30
-140.86
-44.80
7
A
VAL
34
33.04
88.80
7
A
PHE
153
-76.98
-70.32
7
A
MET
163
-91.97
-92.62
7
A
LYS
216
-106.40
-74.14
7
A
ILE
229
40.09
102.28
7
A
PHE
230
71.85
-55.48
8
A
ALA
2
23.49
91.80
8
A
GLN
3
28.66
65.10
8
A
ARG
7
-158.55
-51.31
8
A
GLU
9
-67.19
4.37
8
A
VAL
29
-76.37
40.95
8
A
LYS
30
-140.88
-44.78
8
A
VAL
34
32.99
88.76
8
A
PHE
153
-76.98
-70.27
8
A
MET
163
-91.96
-92.68
8
A
LYS
216
-90.77
-70.66
8
A
ILE
229
40.12
102.27
8
A
PHE
230
71.85
-55.46
9
A
ALA
2
23.37
91.83
9
A
GLN
3
28.68
65.05
9
A
ARG
7
-158.60
-51.28
9
A
GLU
9
-67.23
4.31
9
A
VAL
29
-76.33
40.88
9
A
LYS
30
-140.79
-44.89
9
A
VAL
34
33.01
88.77
9
A
ASP
85
-51.95
-72.30
9
A
PHE
153
-76.97
-70.31
9
A
MET
163
-91.91
-92.64
9
A
LYS
216
-128.87
-68.83
9
A
ILE
229
40.07
102.27
9
A
PHE
230
71.87
-55.47
10
A
ALA
2
23.37
91.86
10
A
GLN
3
28.67
65.00
10
A
ARG
7
-158.55
-51.32
10
A
GLU
9
-67.11
4.28
10
A
VAL
29
-76.39
40.97
10
A
LYS
30
-140.88
-44.86
10
A
VAL
34
33.02
88.75
10
A
ASP
85
-52.41
-71.09
10
A
PHE
153
-77.05
-70.27
10
A
MET
163
-91.85
-92.62
10
A
LYS
216
-98.65
-71.66
10
A
ILE
229
40.15
102.23
10
A
PHE
230
71.83
-55.43
11
A
ALA
2
23.42
91.84
11
A
GLN
3
28.62
65.01
11
A
ARG
7
-158.55
-51.32
11
A
GLU
9
-67.19
4.28
11
A
VAL
29
-76.39
40.97
11
A
LYS
30
-140.90
-44.82
11
A
VAL
34
33.03
88.73
11
A
PHE
153
-76.98
-70.32
11
A
MET
163
-91.90
-92.65
11
A
LYS
216
-97.28
-70.81
11
A
ILE
229
40.15
102.26
11
A
PHE
230
71.79
-55.42
12
A
ALA
2
23.43
91.84
12
A
GLN
3
28.69
65.00
12
A
ARG
7
-158.54
-51.39
12
A
GLU
9
-67.19
4.33
12
A
VAL
29
-76.44
40.97
12
A
LYS
30
-140.83
-44.86
12
A
VAL
34
33.01
88.79
12
A
ASP
85
-51.80
-71.88
12
A
PHE
153
-76.95
-70.38
12
A
MET
163
-91.91
-92.59
12
A
LYS
216
-87.51
-71.70
12
A
ILE
229
40.16
102.27
12
A
PHE
230
71.82
-55.45
NMR structure of the 13-cis-15-syn retinal in dark_adapted bacteriorhodopsin
1
N
N
2
N
N
3
N
N
A
GLU
9
A
GLU
9
HELX_P
A
VAL
29
A
VAL
29
1
1
21
A
ASP
36
A
ASP
36
HELX_P
A
LEU
62
A
LEU
62
1
2
27
A
TRP
80
A
TRP
80
HELX_P
A
ASP
102
A
ASP
102
1
3
23
A
ASP
104
A
ASP
104
HELX_P
A
THR
128
A
THR
128
1
4
25
A
VAL
130
A
VAL
130
HELX_P
A
GLY
155
A
GLY
155
1
5
26
A
GLY
155
A
GLY
155
HELX_P
A
GLU
161
A
GLU
161
1
6
7
A
ARG
164
A
ARG
164
HELX_P
A
GLY
192
A
GLY
192
1
7
29
A
PRO
200
A
PRO
200
HELX_P
A
ALA
215
A
ALA
215
1
8
16
A
LYS
216
A
LYS
216
HELX_P
A
LEU
224
A
LEU
224
1
9
9
covale
1.346
one
A
LYS
216
A
NZ
LYS
216
1_555
A
RET
999
B
C15
RET
1_555
MEMBRANE PROTEIN
proton pump, membrane protein, retinal protein, photoreceptor, haloarchea, proton transport
BACR_HALN1
UNP
1
14
P02945
QAQITGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYW
ARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKA
ESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFGE
14
245
1R84
1
232
P02945
A
1
1
232
2
anti-parallel
A
THR
67
A
THR
67
A
PHE
71
A
PHE
71
A
GLU
74
A
GLU
74
A
ILE
78
A
ILE
78
BINDING SITE FOR RESIDUE RET A 999
A
RET
999
Software
7
A
TRP
86
A
TRP
86
7
1_555
A
MET
118
A
MET
118
7
1_555
A
TRP
182
A
TRP
182
7
1_555
A
TYR
185
A
TYR
185
7
1_555
A
TRP
189
A
TRP
189
7
1_555
A
ASP
212
A
ASP
212
7
1_555
A
LYS
216
A
LYS
216
7
1_555