1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Shenkarev, Z.O. Balashova, T.A. Yakimenko, Z.A. Ovchinnikova, T.V. Arseniev, A.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C2 H4 O 44.053 ACETYL GROUP non-polymer C4 H9 N O2 103.120 n ALPHA-AMINOISOBUTYRIC ACID L-peptide linking C5 H11 N O2 117.146 D-ISOVALINE D-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O3 131.130 n 4-HYDROXYPROLINE HYDROXYPROLINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C9 H13 N O 151.206 n L-PHENYLALANINOL bound form of Phenylalaninal L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking UK J.Pept.Sci. JPSIEI 1225 1075-2617 9 817 826 10.1002/PSC.499 14658801 Biosynthetic Uniform 13C,15N-Labelling of Zervamicin Iib. Complete 13C and 15N NMR Assignment. 2003 NE FEBS Lett. FEBLAL 0165 0014-5793 466 333 10.1016/S0014-5793(99)01707-X NMR Structure of the Channel-Former Zervamicin Iib in Isotropic Solvents 2000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1823.183 ZERVAMICIN IIB 1 nat polymer no yes (ACE)WIQ(DIV)IT(AIB)L(AIB)(HYP)Q(AIB)(HYP)(AIB)P(PHL) XWIQVITALAPQAPAPF A polypeptide(L) n n n n n n n n n n n n n n n n n sample 118885 EMERICELLOPSIS SALMOSYNNEMATA 336 IMI 58330 cell chem_comp citation citation_author diffrn diffrn_radiation diffrn_radiation_wavelength pdbx_nmr_exptl_sample_conditions pdbx_nmr_representative repository Initial release Version format compliance Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Other Data collection Database references Experimental preparation Other Structure summary 1 0 2004-11-09 1 1 2011-06-14 1 2 2011-07-13 1 3 2011-07-27 1 4 2012-12-12 1 5 2018-10-10 _chem_comp.pdbx_synonyms _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_representative.selection_criteria CRYSTAL STRUCTURE OF THE PEPTAIBOL TRICHOTOXIN_A50E SOLUTION STRUCTURE OF THE PEPTIABOL ZERVAMICIN IIB SOLUTION STRUCTURE OF THE PEPTAIBOL ZERVAMICIN IIB BOUND TO DPC MICELLES SOLUTION STRUCTURE OF THE PEPTAIBOL ANTIAMOEBIN I CRYSTAL STRUCTURE OF THE PEPTAIBOL ANTIAMOEBIN I CRYSTAL STRUCTURE OF THE PEPTAIBOL ALAMETHICIN SOLUTION STRUCTURE OF THE PEPTAIBOL CHRYSOSPERMIN C BOUND TO DPC MICELLES CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL C CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL B CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL A RCSB Y RCSB 2003-10-31 REL REL ZERVAMICIN IIB IS LINEAR PEPTIDE, A MEMBER OF THE PEPTAIBOL FAMILY OF MEMBRANE CHANNEL FORMING PEPTIDES. HERE, ZERVAMICIN IS REPRESENTED BY THE SEQUENCE (SEQRES) Antibiotic ZERVAMICIN IS A HEXADECAMERIC HELICAL PEPTIDE. THE N-TERM IS ACETYLATED (RESIDUE 0) Zervamicin IIB Peptaibol THIS STRUCTURE IS A REFINED STRUCTURE OF PREVIOUS DEPOSITION (1DLZ) ON THE BASIS OF HYDROGEN BOND RESTRAINTS, DETERMINED EXPERIMENTALY. INCLUDING RESTRAINTS FOR OBSERVED BIFURCATED HYDROGEN BOND. STRUCTURES WITH THE LEAST RESTRAINT VIOLATIONS, STRUCTURES WITH THE LOWEST ENERGY,TARGET FUNCTION 1000 24 LONG RANGE 2D-HNCO 0 6.2 1 atm 305 K STRUCTURE WAS REFINED USING ADDITIONAL 22/22 (UPPER/LOWER) RESTRAINTS FOR HYDROGEN BONDS. REFINEMENT WAS DONE IN ECEPP/2 FORCE FIELD USING IMPLICIT SOLVENT MODEL SIMULATED ANNEALING, TORSION ANGLE DYNAMICS, ENERGY MINIMISATION 1 lowest energy 4MM U-15N-13C ZRV-IIB, METHANOL (CD3OH) PH 6.2 VON FREYBERG refinement FANTOM 4.0 structure solution XWINNMR 2.6 structure solution XEASY X structure solution DYANA 1.5 500 Bruker Avance ACE 0 n 1 ACE 0 A TRP 1 n 2 TRP 1 A ILE 2 n 3 ILE 2 A GLN 3 n 4 GLN 3 A DIV 4 n 5 DIV 4 A ILE 5 n 6 ILE 5 A THR 6 n 7 THR 6 A AIB 7 n 8 AIB 7 A LEU 8 n 9 LEU 8 A AIB 9 n 10 AIB 9 A HYP 10 n 11 HYP 10 A GLN 11 n 12 GLN 11 A AIB 12 n 13 AIB 12 A HYP 13 n 14 HYP 13 A AIB 14 n 15 AIB 14 A PRO 15 n 16 PRO 15 A PHL 16 n 17 PHL 16 A software_defined_assembly PQS 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 ZERVAMICIN IIB Refined structure of peptaibol zervamicin IIB in methanol solution from trans-hydrogen bond J couplings 1 N N A TRP 1 A TRP 2 HELX_P A HYP 13 A HYP 14 1 1 13 covale 1.325 A ACE 0 A C ACE 1 1_555 A TRP 1 A N TRP 2 1_555 covale 1.325 A GLN 3 A C GLN 4 1_555 A DIV 4 A N DIV 5 1_555 covale 1.326 A DIV 4 A C DIV 5 1_555 A ILE 5 A N ILE 6 1_555 covale 1.325 A THR 6 A C THR 7 1_555 A AIB 7 A N AIB 8 1_555 covale 1.325 A AIB 7 A C AIB 8 1_555 A LEU 8 A N LEU 9 1_555 covale 1.325 A LEU 8 A C LEU 9 1_555 A AIB 9 A N AIB 10 1_555 covale 1.360 A AIB 9 A C AIB 10 1_555 A HYP 10 A N HYP 11 1_555 covale 1.324 A HYP 10 A C HYP 11 1_555 A GLN 11 A N GLN 12 1_555 covale 1.324 A GLN 11 A C GLN 12 1_555 A AIB 12 A N AIB 13 1_555 covale 1.360 A AIB 12 A C AIB 13 1_555 A HYP 13 A N HYP 14 1_555 covale 1.325 A HYP 13 A C HYP 14 1_555 A AIB 14 A N AIB 15 1_555 covale 1.359 A AIB 14 A C AIB 15 1_555 A PRO 15 A N PRO 16 1_555 covale 1.326 A PRO 15 A C PRO 16 1_555 A PHL 16 A N PHL 17 1_555 ANTIBIOTIC ZREVAMICIN, BIFURCATED HYDROGEN BOND, PEPTAIBOL, ANTIBACTERIAL, ANTIFUNGAL, ANTIBIOTIC, BENT HELIX NOR01092 NOR 1 NOR01092 0 16 1R9U 0 16 NOR01092 A 1 1 17 1 P 1