1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Yamazaki, T.
Fujiwara, M.
Kato, T.
Yamasaki, K.
Nagayama, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
JA
Biol.Pharm.Bull.
0918-6158
23
1147
11041241
Solution Structure of Ribonuclease Hi from Escherichia Coli
2000
US
Biochemistry
BICHAW
0033
0006-2960
32
5656
Complete Assignments of Magnetic Resonances of Ribonuclease H from Escherichia Coli by Double-and Triple-Resonance 2D and 3D NMR Spectroscopies
1993
New York : Plenum Press
US
Computational Aspects of the Study of Biological Macromolecules by Nuclear Magnetic Resonance Spectroscopy (in: Nato Asi Ser.,Ser.A, V.225)
2070
0-306-44114-4
233
A New Version of Dadas (Distance Analysis in Dihedral Angle Space) and its Performance
1991
1
2
3
10.2210/pdb1rch/pdb
pdb_00001rch
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
17622.998
RIBONUCLEASE HI
3.1.26.4
1
nat
polymer
RNASE H
no
no
MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQ
WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV
MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQ
WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
sample
562
Escherichia coli
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1997-02-12
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-03-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
Y
BNL
1995-06-23
REL
REL
8
JEOL.LTD
refinement
DADAS90
MET
1
n
1
MET
1
A
LEU
2
n
2
LEU
2
A
LYS
3
n
3
LYS
3
A
GLN
4
n
4
GLN
4
A
VAL
5
n
5
VAL
5
A
GLU
6
n
6
GLU
6
A
ILE
7
n
7
ILE
7
A
PHE
8
n
8
PHE
8
A
THR
9
n
9
THR
9
A
ASP
10
n
10
ASP
10
A
GLY
11
n
11
GLY
11
A
SER
12
n
12
SER
12
A
CYS
13
n
13
CYS
13
A
LEU
14
n
14
LEU
14
A
GLY
15
n
15
GLY
15
A
ASN
16
n
16
ASN
16
A
PRO
17
n
17
PRO
17
A
GLY
18
n
18
GLY
18
A
PRO
19
n
19
PRO
19
A
GLY
20
n
20
GLY
20
A
GLY
21
n
21
GLY
21
A
TYR
22
n
22
TYR
22
A
GLY
23
n
23
GLY
23
A
ALA
24
n
24
ALA
24
A
ILE
25
n
25
ILE
25
A
LEU
26
n
26
LEU
26
A
ARG
27
n
27
ARG
27
A
TYR
28
n
28
TYR
28
A
ARG
29
n
29
ARG
29
A
GLY
30
n
30
GLY
30
A
ARG
31
n
31
ARG
31
A
GLU
32
n
32
GLU
32
A
LYS
33
n
33
LYS
33
A
THR
34
n
34
THR
34
A
PHE
35
n
35
PHE
35
A
SER
36
n
36
SER
36
A
ALA
37
n
37
ALA
37
A
GLY
38
n
38
GLY
38
A
TYR
39
n
39
TYR
39
A
THR
40
n
40
THR
40
A
ARG
41
n
41
ARG
41
A
THR
42
n
42
THR
42
A
THR
43
n
43
THR
43
A
ASN
44
n
44
ASN
44
A
ASN
45
n
45
ASN
45
A
ARG
46
n
46
ARG
46
A
MET
47
n
47
MET
47
A
GLU
48
n
48
GLU
48
A
LEU
49
n
49
LEU
49
A
MET
50
n
50
MET
50
A
ALA
51
n
51
ALA
51
A
ALA
52
n
52
ALA
52
A
ILE
53
n
53
ILE
53
A
VAL
54
n
54
VAL
54
A
ALA
55
n
55
ALA
55
A
LEU
56
n
56
LEU
56
A
GLU
57
n
57
GLU
57
A
ALA
58
n
58
ALA
58
A
LEU
59
n
59
LEU
59
A
LYS
60
n
60
LYS
60
A
GLU
61
n
61
GLU
61
A
HIS
62
n
62
HIS
62
A
CYS
63
n
63
CYS
63
A
GLU
64
n
64
GLU
64
A
VAL
65
n
65
VAL
65
A
ILE
66
n
66
ILE
66
A
LEU
67
n
67
LEU
67
A
SER
68
n
68
SER
68
A
THR
69
n
69
THR
69
A
ASP
70
n
70
ASP
70
A
SER
71
n
71
SER
71
A
GLN
72
n
72
GLN
72
A
TYR
73
n
73
TYR
73
A
VAL
74
n
74
VAL
74
A
ARG
75
n
75
ARG
75
A
GLN
76
n
76
GLN
76
A
GLY
77
n
77
GLY
77
A
ILE
78
n
78
ILE
78
A
THR
79
n
79
THR
79
A
GLN
80
n
80
GLN
80
A
TRP
81
n
81
TRP
81
A
ILE
82
n
82
ILE
82
A
HIS
83
n
83
HIS
83
A
ASN
84
n
84
ASN
84
A
TRP
85
n
85
TRP
85
A
LYS
86
n
86
LYS
86
A
LYS
87
n
87
LYS
87
A
ARG
88
n
88
ARG
88
A
GLY
89
n
89
GLY
89
A
TRP
90
n
90
TRP
90
A
LYS
91
n
91
LYS
91
A
THR
92
n
92
THR
92
A
ALA
93
n
93
ALA
93
A
ASP
94
n
94
ASP
94
A
LYS
95
n
95
LYS
95
A
LYS
96
n
96
LYS
96
A
PRO
97
n
97
PRO
97
A
VAL
98
n
98
VAL
98
A
LYS
99
n
99
LYS
99
A
ASN
100
n
100
ASN
100
A
VAL
101
n
101
VAL
101
A
ASP
102
n
102
ASP
102
A
LEU
103
n
103
LEU
103
A
TRP
104
n
104
TRP
104
A
GLN
105
n
105
GLN
105
A
ARG
106
n
106
ARG
106
A
LEU
107
n
107
LEU
107
A
ASP
108
n
108
ASP
108
A
ALA
109
n
109
ALA
109
A
ALA
110
n
110
ALA
110
A
LEU
111
n
111
LEU
111
A
GLY
112
n
112
GLY
112
A
GLN
113
n
113
GLN
113
A
HIS
114
n
114
HIS
114
A
GLN
115
n
115
GLN
115
A
ILE
116
n
116
ILE
116
A
LYS
117
n
117
LYS
117
A
TRP
118
n
118
TRP
118
A
GLU
119
n
119
GLU
119
A
TRP
120
n
120
TRP
120
A
VAL
121
n
121
VAL
121
A
LYS
122
n
122
LYS
122
A
GLY
123
n
123
GLY
123
A
HIS
124
n
124
HIS
124
A
ALA
125
n
125
ALA
125
A
GLY
126
n
126
GLY
126
A
HIS
127
n
127
HIS
127
A
PRO
128
n
128
PRO
128
A
GLU
129
n
129
GLU
129
A
ASN
130
n
130
ASN
130
A
GLU
131
n
131
GLU
131
A
ARG
132
n
132
ARG
132
A
CYS
133
n
133
CYS
133
A
ASP
134
n
134
ASP
134
A
GLU
135
n
135
GLU
135
A
LEU
136
n
136
LEU
136
A
ALA
137
n
137
ALA
137
A
ARG
138
n
138
ARG
138
A
ALA
139
n
139
ALA
139
A
ALA
140
n
140
ALA
140
A
ALA
141
n
141
ALA
141
A
MET
142
n
142
MET
142
A
ASN
143
n
143
ASN
143
A
PRO
144
n
144
PRO
144
A
THR
145
n
145
THR
145
A
LEU
146
n
146
LEU
146
A
GLU
147
n
147
GLU
147
A
ASP
148
n
148
ASP
148
A
THR
149
n
149
THR
149
A
GLY
150
n
150
GLY
150
A
TYR
151
n
151
TYR
151
A
GLN
152
n
152
GLN
152
A
VAL
153
n
153
VAL
153
A
GLU
154
n
154
GLU
154
A
VAL
155
n
155
VAL
155
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ARG
31
A
O
ARG
31
A
N
TYR
28
A
N
TYR
28
A
O
GLY
21
A
O
GLY
21
A
N
SER
12
A
N
SER
12
A
O
VAL
5
A
O
VAL
5
A
N
ILE
66
A
N
ILE
66
A
O
VAL
65
A
O
VAL
65
A
N
LYS
117
A
N
LYS
117
2
A
A
O
HD1
CYS
HIS
63
114
1.56
3
A
A
O
H
VAL
ILE
74
78
1.58
6
A
A
O
H
ILE
GLU
53
57
1.60
7
A
A
O
HG21
ILE
ILE
78
82
0.84
7
A
A
O
H
TRP
ASP
104
108
1.50
7
A
A
O
HA
TRP
TRP
85
90
1.56
7
A
A
O
H
ARG
MET
46
50
1.57
7
A
A
O
HG12
VAL
ILE
74
78
1.59
7
A
A
O
CG2
ILE
ILE
78
82
1.67
7
A
A
O
CB
GLN
GLN
76
80
2.17
1
A
ASP
10
-160.37
108.08
1
A
ASN
16
-176.60
76.71
1
A
TYR
28
-111.67
-165.01
1
A
ARG
29
-54.81
97.03
1
A
GLU
61
179.18
105.25
1
A
HIS
62
-55.68
97.18
1
A
ASP
70
-156.15
31.99
1
A
THR
79
-94.71
39.29
1
A
GLN
80
-158.85
-51.70
1
A
ASP
94
-99.54
32.88
1
A
LYS
95
50.91
90.38
1
A
GLN
113
-147.56
-52.25
1
A
HIS
124
-151.46
-52.58
1
A
ALA
125
-93.91
35.58
1
A
MET
142
-95.75
33.09
1
A
ASN
143
-160.39
72.68
1
A
THR
145
-148.74
38.68
2
A
ASP
10
-160.69
92.92
2
A
ASN
16
-168.24
77.66
2
A
ARG
29
-58.98
94.89
2
A
LEU
59
-61.83
97.59
2
A
LYS
60
-96.18
46.20
2
A
ASP
70
-160.15
34.70
2
A
THR
79
-93.98
40.82
2
A
GLN
80
-152.50
-51.12
2
A
ASP
94
-99.01
34.66
2
A
ALA
125
-91.38
51.15
2
A
THR
145
-156.78
-49.93
2
A
GLN
152
-146.92
-81.05
2
A
VAL
153
60.39
60.67
3
A
GLN
4
-174.10
128.92
3
A
ASP
10
-160.25
97.69
3
A
ASN
16
-175.49
76.98
3
A
TYR
28
-114.88
-165.07
3
A
ARG
29
-55.79
97.21
3
A
ARG
41
-164.51
114.40
3
A
LYS
60
-141.40
52.67
3
A
HIS
62
-68.18
76.74
3
A
ILE
78
-68.28
-70.09
3
A
THR
79
-94.99
40.29
3
A
GLN
80
-159.48
-52.17
3
A
TRP
90
56.51
78.62
3
A
THR
92
-132.79
-61.66
3
A
ALA
93
-157.25
-72.94
3
A
ASP
94
-96.16
45.53
3
A
LYS
95
59.02
90.29
3
A
GLN
113
-137.64
-50.02
3
A
HIS
124
-150.84
-55.32
3
A
MET
142
-94.28
36.53
3
A
ASN
143
-155.69
67.96
4
A
LEU
2
64.33
125.19
4
A
ILE
7
-109.73
78.19
4
A
ASN
16
-170.71
78.35
4
A
ARG
29
-49.52
99.64
4
A
SER
36
-151.14
70.52
4
A
ALA
37
-78.57
-168.70
4
A
LEU
59
-57.29
-172.09
4
A
LYS
60
-158.58
31.22
4
A
HIS
62
-65.43
84.11
4
A
ASP
70
-154.63
46.92
4
A
THR
79
-93.76
38.07
4
A
GLN
80
-157.62
-48.05
4
A
ASP
94
-68.59
90.00
4
A
GLN
113
-140.00
-53.12
4
A
LYS
122
-155.38
67.19
4
A
MET
142
-97.91
35.02
4
A
ASN
143
-161.20
80.87
4
A
THR
145
-150.37
-56.85
4
A
THR
149
-101.12
41.29
4
A
VAL
153
-151.72
43.79
4
A
GLU
154
-55.44
-179.71
5
A
ASP
10
-160.30
97.48
5
A
ASN
16
-176.38
76.35
5
A
ARG
29
63.56
-154.03
5
A
GLU
61
178.86
108.77
5
A
HIS
62
-55.88
98.35
5
A
THR
69
-169.38
-169.45
5
A
ASP
70
-159.65
34.25
5
A
ILE
78
-76.36
-72.69
5
A
HIS
83
-58.32
-72.52
5
A
ASP
94
-98.90
32.93
5
A
LYS
95
50.99
90.30
5
A
GLN
113
-148.55
-52.63
5
A
ALA
125
-90.56
53.64
5
A
MET
142
-94.93
35.66
5
A
ASN
143
-160.23
77.25
5
A
THR
149
-53.44
-82.22
6
A
ASP
10
-160.37
90.22
6
A
ASN
16
53.66
90.10
6
A
PRO
17
-75.02
-78.38
6
A
TYR
28
-105.44
-164.98
6
A
ARG
29
-53.54
96.72
6
A
THR
43
-114.49
-166.94
6
A
LYS
60
-100.89
54.09
6
A
CYS
63
-143.28
-146.50
6
A
THR
69
-166.83
-169.03
6
A
ASP
70
-158.75
32.83
6
A
ILE
78
-67.90
-75.16
6
A
GLN
80
-95.33
-66.16
6
A
HIS
83
-59.07
-72.03
6
A
TRP
85
-58.08
-72.38
6
A
ASP
94
-97.24
39.17
6
A
LYS
95
38.97
82.40
6
A
GLN
113
-78.22
-70.15
6
A
ALA
125
-90.34
53.08
6
A
MET
142
-93.36
32.83
6
A
ASN
143
-160.30
78.17
6
A
THR
145
-149.32
-50.93
7
A
GLN
4
-172.64
147.20
7
A
ASP
10
-160.68
97.41
7
A
SER
12
-157.94
87.54
7
A
ASN
16
-170.19
76.75
7
A
TYR
28
-104.73
-164.72
7
A
ARG
29
-55.94
91.02
7
A
SER
36
-161.60
97.16
7
A
GLU
61
-177.49
112.58
7
A
ASP
70
-92.60
38.24
7
A
THR
79
-96.04
35.81
7
A
GLN
80
-147.66
-53.60
7
A
LYS
86
-92.33
-80.63
7
A
ARG
88
-44.47
-97.52
7
A
ASP
94
-85.80
48.52
7
A
LYS
95
30.35
63.74
7
A
GLN
113
-144.69
-58.27
7
A
ALA
125
-90.26
52.24
7
A
THR
145
-151.56
38.95
7
A
GLU
154
-155.73
-58.00
8
A
ASP
10
-160.50
90.09
8
A
ASN
16
-167.14
77.94
8
A
ARG
29
63.01
-153.77
8
A
GLU
61
174.03
127.54
8
A
THR
69
-170.01
-172.23
8
A
ASP
70
-153.64
32.79
8
A
THR
79
-93.96
41.30
8
A
GLN
80
-153.18
-51.13
8
A
LYS
86
-48.36
-70.28
8
A
THR
92
-128.05
-53.79
8
A
ALA
93
-153.84
-73.29
8
A
LEU
107
-70.62
-70.90
8
A
GLN
113
-148.02
-52.59
8
A
LYS
122
-79.26
32.27
8
A
ALA
125
-67.51
-116.53
8
A
MET
142
-95.51
35.47
8
A
ASN
143
-158.10
71.22
8
A
THR
145
-148.98
56.19
8
A
THR
149
-89.19
-75.91
8
A
TYR
151
-54.92
107.66
SOLUTION NMR STRUCTURE OF RIBONUCLEASE HI FROM ESCHERICHIA COLI, 8 STRUCTURES
1
Y
N
A
ASN
44
A
ASN
44
HELX_P
A
ALA
58
A
ALA
58
1
1
15
A
GLN
72
A
GLN
72
HELX_P
A
ILE
78
A
ILE
78
1
2
7
A
TRP
81
A
TRP
81
HELX_P
A
ARG
88
A
ARG
88
1
3
8
A
VAL
101
A
VAL
101
HELX_P
A
LEU
111
A
LEU
111
1
4
11
A
PRO
128
A
PRO
128
HELX_P
A
ALA
141
A
ALA
141
1
5
14
ENDONUCLEASE
HYDROLASE, NUCLEASE, ENDONUCLEASE, MAGNESIUM
A
ASN
16
A
ASN
16
1
A
PRO
17
A
PRO
17
-4.09
A
ASN
16
A
ASN
16
2
A
PRO
17
A
PRO
17
-2.11
A
ASN
16
A
ASN
16
3
A
PRO
17
A
PRO
17
-6.30
A
ASN
16
A
ASN
16
4
A
PRO
17
A
PRO
17
5.43
A
ASN
16
A
ASN
16
5
A
PRO
17
A
PRO
17
-2.26
A
ASN
16
A
ASN
16
6
A
PRO
17
A
PRO
17
-5.90
A
ASN
16
A
ASN
16
7
A
PRO
17
A
PRO
17
-0.43
A
ASN
16
A
ASN
16
8
A
PRO
17
A
PRO
17
-0.94
RNH_ECOLI
UNP
1
1
P0A7Y4
MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQ
WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV
1
155
1RCH
1
155
P0A7Y4
A
1
1
155
5
anti-parallel
anti-parallel
parallel
parallel
A
ARG
31
A
ARG
31
A
SER
36
A
SER
36
A
GLY
21
A
GLY
21
A
TYR
28
A
TYR
28
A
GLN
4
A
GLN
4
A
CYS
13
A
CYS
13
A
GLU
64
A
GLU
64
A
SER
68
A
SER
68
A
HIS
114
A
HIS
114
A
LYS
122
A
LYS
122
1
P 1