0.013759 0.000000 0.000000 0.000000 0.013136 0.000000 0.000000 0.000000 0.007339 0.000000 0.000000 0.000000 Le Magueres, P. Im, H. Dvorak, A. Strych, U. Benedik, M. Krause, K.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 72.679 76.129 136.266 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C6 H14 N2 O2 146.188 D-LYSINE D-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C7 H14 N2 O4 190.197 n LYSINE NZ-CARBOXYLIC ACID L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C8 H10 N O6 P 247.142 PYRIDOXAL-5'-PHOSPHATE VITAMIN B6 Phosphate non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 42 14752 14761 10.1021/bi030165v 14674749 Crystal structure at 1.45 A resolution of alanine racemase from a pathogenic bacterium, Pseudomonas aeruginosa, contains both internal and external aldimine forms. 2003 US Curr.Microbiol. 0343-8651 41 290 294 10.1007/s002840010136 Characterization of the alanine racemases from Pseudomonas aeruginosa PAO1 2000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 93 1 CCD 2000-09-03 ADSC QUANTUM 4 0.95 polarization SINGLE WAVELENGTH M x-ray 1 0.9840 1.0 0.9795 1.0 0.9791 1.0 0.9611 1.0 14-BM-D APS 0.9840, 0.9795, 0.9791, 0.9611 SYNCHROTRON APS BEAMLINE 14-BM-D 39162.938 catabolic alanine racemase DadX 5.1.1.1 1 man polymer 247.142 PYRIDOXAL-5'-PHOSPHATE 1 syn non-polymer 146.188 D-LYSINE 1 syn non-polymer 18.015 water 306 nat water no yes MRPARALIDLQALRHNYRLAREATGARALAVIKADAYGHGAVRCAEALAAEADGFAVACIEEGLELREAGIRQPILLLEG FFEASELELIVAHDFWCVVHCAWQLEAIERASLARPLNVWL(KCX)MDSGMHRVGFFPEDFRAAHERLRASGKVAKIVMM SHFSRADELDCPRTEEQLAAFSAASQGLEGEISLRNSPAVLGWPKVPSDWVRPGILLYGATPFERAHPLADRLRPVMTLE SKVISVRDLPAGEPVGYGARYSTERRQRIGVVAMGYADGYPRHAADGTLVFIDGKPGRLVGRVSMDMLTVDLTDHPQAGL GSRVELWGPNVPVGALAAQFGSIPYQLLCNLKRVPRVYSGA MRPARALIDLQALRHNYRLAREATGARALAVIKADAYGHGAVRCAEALAAEADGFAVACIEEGLELREAGIRQPILLLEG FFEASELELIVAHDFWCVVHCAWQLEAIERASLARPLNVWLKMDSGMHRVGFFPEDFRAAHERLRASGKVAKIVMMSHFS RADELDCPRTEEQLAAFSAASQGLEGEISLRNSPAVLGWPKVPSDWVRPGILLYGATPFERAHPLADRLRPVMTLESKVI SVRDLPAGEPVGYGARYSTERRQRIGVVAMGYADGYPRHAADGTLVFIDGKPGRLVGRVSMDMLTVDLTDHPQAGLGSRV ELWGPNVPVGALAAQFGSIPYQLLCNLKRVPRVYSGA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Pseudomonas Escherichia Escherichia coli sample dadx 287 Pseudomonas aeruginosa 511693 Escherichia coli BL21 BL21 Plasmid pET26 1 2.41 48.86 VAPOR DIFFUSION, SITTING DROP 7.5 PEG 400, ammonium sulfate, HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 repository Initial release Version format compliance Derived calculations Version format compliance 1 0 2004-06-01 1 1 2008-04-29 1 2 2011-07-13 alanine racemase from Bacillus stearothermophilus complexed with acetate Alanine Racemase Complexed With Alanine Phosphonate Alanine Racemase With Bound Inhibitor Derived From D-Cycloserine Alanine Racemase Bound With N-(5'-Phosphopyridoxyl)-L-Alanine Alanine Racemase With Bound Propionate Inhibitor RCSB Y RCSB 2003-11-04 REL PLP PYRIDOXAL-5'-PHOSPHATE DLY D-LYSINE HOH water PLP 358 2 PLP PLP 358 A DLY 359 3 DLY DLY 359 A HOH 501 4 HOH HOH 501 A HOH 502 4 HOH HOH 502 A HOH 503 4 HOH HOH 503 A HOH 504 4 HOH HOH 504 A HOH 505 4 HOH HOH 505 A HOH 506 4 HOH HOH 506 A HOH 507 4 HOH HOH 507 A HOH 508 4 HOH HOH 508 A HOH 509 4 HOH HOH 509 A HOH 510 4 HOH HOH 510 A HOH 511 4 HOH HOH 511 A HOH 512 4 HOH HOH 512 A HOH 513 4 HOH HOH 513 A HOH 514 4 HOH HOH 514 A HOH 515 4 HOH HOH 515 A HOH 516 4 HOH HOH 516 A HOH 517 4 HOH HOH 517 A HOH 518 4 HOH HOH 518 A HOH 519 4 HOH HOH 519 A HOH 520 4 HOH HOH 520 A HOH 521 4 HOH HOH 521 A HOH 522 4 HOH HOH 522 A HOH 523 4 HOH HOH 523 A HOH 524 4 HOH HOH 524 A HOH 525 4 HOH HOH 525 A HOH 526 4 HOH HOH 526 A HOH 527 4 HOH HOH 527 A HOH 528 4 HOH HOH 528 A HOH 529 4 HOH HOH 529 A HOH 530 4 HOH HOH 530 A HOH 531 4 HOH HOH 531 A HOH 532 4 HOH HOH 532 A HOH 533 4 HOH HOH 533 A HOH 534 4 HOH HOH 534 A HOH 535 4 HOH HOH 535 A HOH 536 4 HOH HOH 536 A HOH 537 4 HOH HOH 537 A HOH 538 4 HOH HOH 538 A HOH 539 4 HOH HOH 539 A HOH 540 4 HOH HOH 540 A HOH 541 4 HOH HOH 541 A HOH 542 4 HOH HOH 542 A HOH 543 4 HOH HOH 543 A HOH 544 4 HOH HOH 544 A HOH 545 4 HOH HOH 545 A HOH 546 4 HOH HOH 546 A HOH 548 4 HOH HOH 548 A HOH 549 4 HOH HOH 549 A HOH 550 4 HOH HOH 550 A HOH 551 4 HOH HOH 551 A HOH 552 4 HOH HOH 552 A HOH 553 4 HOH HOH 553 A HOH 554 4 HOH HOH 554 A HOH 555 4 HOH HOH 555 A HOH 556 4 HOH HOH 556 A HOH 557 4 HOH HOH 557 A HOH 558 4 HOH HOH 558 A HOH 559 4 HOH HOH 559 A HOH 560 4 HOH HOH 560 A HOH 561 4 HOH HOH 561 A HOH 562 4 HOH HOH 562 A HOH 563 4 HOH HOH 563 A HOH 564 4 HOH HOH 564 A HOH 565 4 HOH HOH 565 A HOH 566 4 HOH HOH 566 A HOH 567 4 HOH HOH 567 A HOH 568 4 HOH HOH 568 A HOH 569 4 HOH HOH 569 A HOH 570 4 HOH HOH 570 A HOH 571 4 HOH HOH 571 A HOH 572 4 HOH HOH 572 A HOH 573 4 HOH HOH 573 A HOH 574 4 HOH HOH 574 A HOH 575 4 HOH HOH 575 A HOH 576 4 HOH HOH 576 A HOH 577 4 HOH HOH 577 A HOH 578 4 HOH HOH 578 A HOH 579 4 HOH HOH 579 A HOH 580 4 HOH HOH 580 A HOH 581 4 HOH HOH 581 A HOH 582 4 HOH HOH 582 A HOH 583 4 HOH HOH 583 A HOH 584 4 HOH HOH 584 A HOH 585 4 HOH HOH 585 A HOH 586 4 HOH HOH 586 A HOH 587 4 HOH HOH 587 A HOH 588 4 HOH HOH 588 A HOH 589 4 HOH HOH 589 A HOH 590 4 HOH HOH 590 A HOH 591 4 HOH HOH 591 A HOH 592 4 HOH HOH 592 A HOH 593 4 HOH HOH 593 A HOH 594 4 HOH HOH 594 A HOH 595 4 HOH HOH 595 A HOH 596 4 HOH HOH 596 A HOH 597 4 HOH HOH 597 A HOH 598 4 HOH HOH 598 A HOH 600 4 HOH HOH 600 A HOH 601 4 HOH HOH 601 A HOH 602 4 HOH HOH 602 A HOH 603 4 HOH HOH 603 A HOH 604 4 HOH HOH 604 A HOH 605 4 HOH HOH 605 A HOH 606 4 HOH HOH 606 A HOH 607 4 HOH HOH 607 A HOH 608 4 HOH HOH 608 A HOH 609 4 HOH HOH 609 A HOH 610 4 HOH HOH 610 A HOH 611 4 HOH HOH 611 A HOH 612 4 HOH HOH 612 A HOH 613 4 HOH HOH 613 A HOH 614 4 HOH HOH 614 A HOH 615 4 HOH HOH 615 A HOH 616 4 HOH HOH 616 A HOH 617 4 HOH HOH 617 A HOH 618 4 HOH HOH 618 A HOH 619 4 HOH HOH 619 A HOH 620 4 HOH HOH 620 A HOH 621 4 HOH HOH 621 A HOH 622 4 HOH HOH 622 A HOH 623 4 HOH HOH 623 A HOH 624 4 HOH HOH 624 A HOH 625 4 HOH HOH 625 A HOH 626 4 HOH HOH 626 A HOH 627 4 HOH HOH 627 A HOH 628 4 HOH HOH 628 A HOH 629 4 HOH HOH 629 A HOH 630 4 HOH HOH 630 A HOH 631 4 HOH HOH 631 A HOH 632 4 HOH HOH 632 A HOH 633 4 HOH HOH 633 A HOH 634 4 HOH HOH 634 A HOH 636 4 HOH HOH 636 A HOH 637 4 HOH HOH 637 A HOH 638 4 HOH HOH 638 A HOH 639 4 HOH HOH 639 A HOH 640 4 HOH HOH 640 A HOH 641 4 HOH HOH 641 A HOH 642 4 HOH HOH 642 A HOH 643 4 HOH HOH 643 A HOH 644 4 HOH HOH 644 A HOH 645 4 HOH HOH 645 A HOH 646 4 HOH HOH 646 A HOH 647 4 HOH HOH 647 A HOH 648 4 HOH HOH 648 A HOH 649 4 HOH HOH 649 A HOH 650 4 HOH HOH 650 A HOH 651 4 HOH HOH 651 A HOH 652 4 HOH HOH 652 A HOH 653 4 HOH HOH 653 A HOH 654 4 HOH HOH 654 A HOH 655 4 HOH HOH 655 A HOH 656 4 HOH HOH 656 A HOH 657 4 HOH HOH 657 A HOH 658 4 HOH HOH 658 A HOH 659 4 HOH HOH 659 A HOH 660 4 HOH HOH 660 A HOH 661 4 HOH HOH 661 A HOH 662 4 HOH HOH 662 A HOH 663 4 HOH HOH 663 A HOH 664 4 HOH HOH 664 A HOH 665 4 HOH HOH 665 A HOH 666 4 HOH HOH 666 A HOH 667 4 HOH HOH 667 A HOH 668 4 HOH HOH 668 A HOH 669 4 HOH HOH 669 A HOH 670 4 HOH HOH 670 A HOH 671 4 HOH HOH 671 A HOH 672 4 HOH HOH 672 A HOH 673 4 HOH HOH 673 A HOH 674 4 HOH HOH 674 A HOH 675 4 HOH HOH 675 A HOH 676 4 HOH HOH 676 A HOH 677 4 HOH HOH 677 A HOH 678 4 HOH HOH 678 A HOH 679 4 HOH HOH 679 A HOH 680 4 HOH HOH 680 A HOH 681 4 HOH HOH 681 A HOH 682 4 HOH HOH 682 A HOH 683 4 HOH HOH 683 A HOH 684 4 HOH HOH 684 A HOH 685 4 HOH HOH 685 A HOH 686 4 HOH HOH 686 A HOH 687 4 HOH HOH 687 A HOH 688 4 HOH HOH 688 A HOH 689 4 HOH HOH 689 A HOH 690 4 HOH HOH 690 A HOH 691 4 HOH HOH 691 A HOH 692 4 HOH HOH 692 A HOH 693 4 HOH HOH 693 A HOH 694 4 HOH HOH 694 A HOH 695 4 HOH HOH 695 A HOH 696 4 HOH HOH 696 A HOH 697 4 HOH HOH 697 A HOH 698 4 HOH HOH 698 A HOH 699 4 HOH HOH 699 A HOH 700 4 HOH HOH 700 A HOH 701 4 HOH HOH 701 A HOH 702 4 HOH HOH 702 A HOH 703 4 HOH HOH 703 A HOH 704 4 HOH HOH 704 A HOH 705 4 HOH HOH 705 A HOH 706 4 HOH HOH 706 A HOH 707 4 HOH HOH 707 A HOH 708 4 HOH HOH 708 A HOH 709 4 HOH HOH 709 A HOH 710 4 HOH HOH 710 A HOH 711 4 HOH HOH 711 A HOH 713 4 HOH HOH 713 A HOH 714 4 HOH HOH 714 A HOH 715 4 HOH HOH 715 A HOH 716 4 HOH HOH 716 A HOH 718 4 HOH HOH 718 A HOH 719 4 HOH HOH 719 A HOH 720 4 HOH HOH 720 A HOH 721 4 HOH HOH 721 A HOH 722 4 HOH HOH 722 A HOH 723 4 HOH HOH 723 A HOH 724 4 HOH HOH 724 A HOH 725 4 HOH HOH 725 A HOH 726 4 HOH HOH 726 A HOH 727 4 HOH HOH 727 A HOH 728 4 HOH HOH 728 A HOH 729 4 HOH HOH 729 A HOH 730 4 HOH HOH 730 A HOH 731 4 HOH HOH 731 A HOH 732 4 HOH HOH 732 A WAT 733 4 HOH HOH 733 A HOH 734 4 HOH HOH 734 A HOH 735 4 HOH HOH 735 A HOH 736 4 HOH HOH 736 A HOH 737 4 HOH HOH 737 A HOH 738 4 HOH HOH 738 A HOH 739 4 HOH HOH 739 A HOH 740 4 HOH HOH 740 A HOH 741 4 HOH HOH 741 A HOH 742 4 HOH HOH 742 A HOH 744 4 HOH HOH 744 A HOH 745 4 HOH HOH 745 A HOH 746 4 HOH HOH 746 A HOH 747 4 HOH HOH 747 A HOH 748 4 HOH HOH 748 A HOH 749 4 HOH HOH 749 A HOH 750 4 HOH HOH 750 A HOH 751 4 HOH HOH 751 A HOH 752 4 HOH HOH 752 A HOH 753 4 HOH HOH 753 A HOH 755 4 HOH HOH 755 A HOH 756 4 HOH HOH 756 A HOH 757 4 HOH HOH 757 A HOH 758 4 HOH HOH 758 A HOH 759 4 HOH HOH 759 A HOH 760 4 HOH HOH 760 A HOH 761 4 HOH HOH 761 A HOH 763 4 HOH HOH 763 A HOH 765 4 HOH HOH 765 A HOH 766 4 HOH HOH 766 A HOH 767 4 HOH HOH 767 A HOH 768 4 HOH HOH 768 A HOH 769 4 HOH HOH 769 A HOH 770 4 HOH HOH 770 A HOH 771 4 HOH HOH 771 A HOH 772 4 HOH HOH 772 A HOH 773 4 HOH HOH 773 A HOH 774 4 HOH HOH 774 A HOH 776 4 HOH HOH 776 A HOH 779 4 HOH HOH 779 A HOH 780 4 HOH HOH 780 A HOH 781 4 HOH HOH 781 A HOH 782 4 HOH HOH 782 A HOH 785 4 HOH HOH 785 A HOH 787 4 HOH HOH 787 A HOH 788 4 HOH HOH 788 A HOH 789 4 HOH HOH 789 A HOH 790 4 HOH HOH 790 A HOH 791 4 HOH HOH 791 A HOH 792 4 HOH HOH 792 A HOH 795 4 HOH HOH 795 A HOH 797 4 HOH HOH 797 A HOH 798 4 HOH HOH 798 A HOH 799 4 HOH HOH 799 A HOH 800 4 HOH HOH 800 A HOH 805 4 HOH HOH 805 A HOH 806 4 HOH HOH 806 A HOH 808 4 HOH HOH 808 A WAT 809 4 HOH HOH 809 A WAT 811 4 HOH HOH 811 A WAT 812 4 HOH HOH 812 A WAT 813 4 HOH HOH 813 A HOH 814 4 HOH HOH 814 A HOH 822 4 HOH HOH 822 A HOH 823 4 HOH HOH 823 A HOH 825 4 HOH HOH 825 A HOH 826 4 HOH HOH 826 A HOH 827 4 HOH HOH 827 A HOH 828 4 HOH HOH 828 A HOH 830 4 HOH HOH 830 A HOH 831 4 HOH HOH 831 A HOH 834 4 HOH HOH 834 A HOH 837 4 HOH HOH 837 A HOH 838 4 HOH HOH 838 A HOH 839 4 HOH HOH 839 A HOH 842 4 HOH HOH 842 A HOH 843 4 HOH HOH 843 A HOH 845 4 HOH HOH 845 A HOH 846 4 HOH HOH 846 A MET 1 n 1 MET 1 A ARG 2 n 2 ARG 2 A PRO 3 n 3 PRO 3 A ALA 4 n 4 ALA 4 A ARG 5 n 5 ARG 5 A ALA 6 n 6 ALA 6 A LEU 7 n 7 LEU 7 A ILE 8 n 8 ILE 8 A ASP 9 n 9 ASP 9 A LEU 10 n 10 LEU 10 A GLN 11 n 11 GLN 11 A ALA 12 n 12 ALA 12 A LEU 13 n 13 LEU 13 A ARG 14 n 14 ARG 14 A HIS 15 n 15 HIS 15 A ASN 16 n 16 ASN 16 A TYR 17 n 17 TYR 17 A ARG 18 n 18 ARG 18 A LEU 19 n 19 LEU 19 A ALA 20 n 20 ALA 20 A ARG 21 n 21 ARG 21 A GLU 22 n 22 GLU 22 A ALA 23 n 23 ALA 23 A THR 24 n 24 THR 24 A GLY 25 n 25 GLY 25 A ALA 26 n 26 ALA 26 A ARG 27 n 27 ARG 27 A ALA 28 n 28 ALA 28 A LEU 29 n 29 LEU 29 A ALA 30 n 30 ALA 30 A VAL 31 n 31 VAL 31 A ILE 32 n 32 ILE 32 A LYS 33 n 33 LYS 33 A ALA 34 n 34 ALA 34 A ASP 35 n 35 ASP 35 A ALA 36 n 36 ALA 36 A TYR 37 n 37 TYR 37 A GLY 38 n 38 GLY 38 A HIS 39 n 39 HIS 39 A GLY 40 n 40 GLY 40 A ALA 41 n 41 ALA 41 A VAL 42 n 42 VAL 42 A ARG 43 n 43 ARG 43 A CYS 44 n 44 CYS 44 A ALA 45 n 45 ALA 45 A GLU 46 n 46 GLU 46 A ALA 47 n 47 ALA 47 A LEU 48 n 48 LEU 48 A ALA 49 n 49 ALA 49 A ALA 50 n 50 ALA 50 A GLU 51 n 51 GLU 51 A ALA 52 n 52 ALA 52 A ASP 53 n 53 ASP 53 A GLY 54 n 54 GLY 54 A PHE 55 n 55 PHE 55 A ALA 56 n 56 ALA 56 A VAL 57 n 57 VAL 57 A ALA 58 n 58 ALA 58 A CYS 59 n 59 CYS 59 A ILE 60 n 60 ILE 60 A GLU 61 n 61 GLU 61 A GLU 62 n 62 GLU 62 A GLY 63 n 63 GLY 63 A LEU 64 n 64 LEU 64 A GLU 65 n 65 GLU 65 A LEU 66 n 66 LEU 66 A ARG 67 n 67 ARG 67 A GLU 68 n 68 GLU 68 A ALA 69 n 69 ALA 69 A GLY 70 n 70 GLY 70 A ILE 71 n 71 ILE 71 A ARG 72 n 72 ARG 72 A GLN 73 n 73 GLN 73 A PRO 74 n 74 PRO 74 A ILE 75 n 75 ILE 75 A LEU 76 n 76 LEU 76 A LEU 77 n 77 LEU 77 A LEU 78 n 78 LEU 78 A GLU 79 n 79 GLU 79 A GLY 80 n 80 GLY 80 A PHE 81 n 81 PHE 81 A PHE 82 n 82 PHE 82 A GLU 83 n 83 GLU 83 A ALA 84 n 84 ALA 84 A SER 85 n 85 SER 85 A GLU 86 n 86 GLU 86 A LEU 87 n 87 LEU 87 A GLU 88 n 88 GLU 88 A LEU 89 n 89 LEU 89 A ILE 90 n 90 ILE 90 A VAL 91 n 91 VAL 91 A ALA 92 n 92 ALA 92 A HIS 93 n 93 HIS 93 A ASP 94 n 94 ASP 94 A PHE 95 n 95 PHE 95 A TRP 96 n 96 TRP 96 A CYS 97 n 97 CYS 97 A VAL 98 n 98 VAL 98 A VAL 99 n 99 VAL 99 A HIS 100 n 100 HIS 100 A CYS 101 n 101 CYS 101 A ALA 102 n 102 ALA 102 A TRP 103 n 103 TRP 103 A GLN 104 n 104 GLN 104 A LEU 105 n 105 LEU 105 A GLU 106 n 106 GLU 106 A ALA 107 n 107 ALA 107 A ILE 108 n 108 ILE 108 A GLU 109 n 109 GLU 109 A ARG 110 n 110 ARG 110 A ALA 111 n 111 ALA 111 A SER 112 n 112 SER 112 A LEU 113 n 113 LEU 113 A ALA 114 n 114 ALA 114 A ARG 115 n 115 ARG 115 A PRO 116 n 116 PRO 116 A LEU 117 n 117 LEU 117 A ASN 118 n 118 ASN 118 A VAL 119 n 119 VAL 119 A TRP 120 n 120 TRP 120 A LEU 121 n 121 LEU 121 A KCX 122 n 122 KCX 122 A MET 123 n 123 MET 123 A ASP 124 n 124 ASP 124 A SER 125 n 125 SER 125 A GLY 126 n 126 GLY 126 A MET 127 n 127 MET 127 A HIS 128 n 128 HIS 128 A ARG 129 n 129 ARG 129 A VAL 130 n 130 VAL 130 A GLY 131 n 131 GLY 131 A PHE 132 n 132 PHE 132 A PHE 133 n 133 PHE 133 A PRO 134 n 134 PRO 134 A GLU 135 n 135 GLU 135 A ASP 136 n 136 ASP 136 A PHE 137 n 137 PHE 137 A ARG 138 n 138 ARG 138 A ALA 139 n 139 ALA 139 A ALA 140 n 140 ALA 140 A HIS 141 n 141 HIS 141 A GLU 142 n 142 GLU 142 A ARG 143 n 143 ARG 143 A LEU 144 n 144 LEU 144 A ARG 145 n 145 ARG 145 A ALA 146 n 146 ALA 146 A SER 147 n 147 SER 147 A GLY 148 n 148 GLY 148 A LYS 149 n 149 LYS 149 A VAL 150 n 150 VAL 150 A ALA 151 n 151 ALA 151 A LYS 152 n 152 LYS 152 A ILE 153 n 153 ILE 153 A VAL 154 n 154 VAL 154 A MET 155 n 155 MET 155 A MET 156 n 156 MET 156 A SER 157 n 157 SER 157 A HIS 158 n 158 HIS 158 A PHE 159 n 159 PHE 159 A SER 160 n 160 SER 160 A ARG 161 n 161 ARG 161 A ALA 162 n 162 ALA 162 A ASP 163 n 163 ASP 163 A GLU 164 n 164 GLU 164 A LEU 165 n 165 LEU 165 A ASP 166 n 166 ASP 166 A CYS 167 n 167 CYS 167 A PRO 168 n 168 PRO 168 A ARG 169 n 169 ARG 169 A THR 170 n 170 THR 170 A GLU 171 n 171 GLU 171 A GLU 172 n 172 GLU 172 A GLN 173 n 173 GLN 173 A LEU 174 n 174 LEU 174 A ALA 175 n 175 ALA 175 A ALA 176 n 176 ALA 176 A PHE 177 n 177 PHE 177 A SER 178 n 178 SER 178 A ALA 179 n 179 ALA 179 A ALA 180 n 180 ALA 180 A SER 181 n 181 SER 181 A GLN 182 n 182 GLN 182 A GLY 183 n 183 GLY 183 A LEU 184 n 184 LEU 184 A GLU 185 n 185 GLU 185 A GLY 186 n 186 GLY 186 A GLU 187 n 187 GLU 187 A ILE 188 n 188 ILE 188 A SER 189 n 189 SER 189 A LEU 190 n 190 LEU 190 A ARG 191 n 191 ARG 191 A ASN 192 n 192 ASN 192 A SER 193 n 193 SER 193 A PRO 194 n 194 PRO 194 A ALA 195 n 195 ALA 195 A VAL 196 n 196 VAL 196 A LEU 197 n 197 LEU 197 A GLY 198 n 198 GLY 198 A TRP 199 n 199 TRP 199 A PRO 200 n 200 PRO 200 A LYS 201 n 201 LYS 201 A VAL 202 n 202 VAL 202 A PRO 203 n 203 PRO 203 A SER 204 n 204 SER 204 A ASP 205 n 205 ASP 205 A TRP 206 n 206 TRP 206 A VAL 207 n 207 VAL 207 A ARG 208 n 208 ARG 208 A PRO 209 n 209 PRO 209 A GLY 210 n 210 GLY 210 A ILE 211 n 211 ILE 211 A LEU 212 n 212 LEU 212 A LEU 213 n 213 LEU 213 A TYR 214 n 214 TYR 214 A GLY 215 n 215 GLY 215 A ALA 216 n 216 ALA 216 A THR 217 n 217 THR 217 A PRO 218 n 218 PRO 218 A PHE 219 n 219 PHE 219 A GLU 220 n 220 GLU 220 A ARG 221 n 221 ARG 221 A ALA 222 n 222 ALA 222 A HIS 223 n 223 HIS 223 A PRO 224 n 224 PRO 224 A LEU 225 n 225 LEU 225 A ALA 226 n 226 ALA 226 A ASP 227 n 227 ASP 227 A ARG 228 n 228 ARG 228 A LEU 229 n 229 LEU 229 A ARG 230 n 230 ARG 230 A PRO 231 n 231 PRO 231 A VAL 232 n 232 VAL 232 A MET 233 n 233 MET 233 A THR 234 n 234 THR 234 A LEU 235 n 235 LEU 235 A GLU 236 n 236 GLU 236 A SER 237 n 237 SER 237 A LYS 238 n 238 LYS 238 A VAL 239 n 239 VAL 239 A ILE 240 n 240 ILE 240 A SER 241 n 241 SER 241 A VAL 242 n 242 VAL 242 A ARG 243 n 243 ARG 243 A ASP 244 n 244 ASP 244 A LEU 245 n 245 LEU 245 A PRO 246 n 246 PRO 246 A ALA 247 n 247 ALA 247 A GLY 248 n 248 GLY 248 A GLU 249 n 249 GLU 249 A PRO 250 n 250 PRO 250 A VAL 251 n 251 VAL 251 A GLY 252 n 252 GLY 252 A TYR 253 n 253 TYR 253 A GLY 254 n 254 GLY 254 A ALA 255 n 255 ALA 255 A ARG 256 n 256 ARG 256 A TYR 257 n 257 TYR 257 A SER 258 n 258 SER 258 A THR 259 n 259 THR 259 A GLU 260 n 260 GLU 260 A ARG 261 n 261 ARG 261 A ARG 262 n 262 ARG 262 A GLN 263 n 263 GLN 263 A ARG 264 n 264 ARG 264 A ILE 265 n 265 ILE 265 A GLY 266 n 266 GLY 266 A VAL 267 n 267 VAL 267 A VAL 268 n 268 VAL 268 A ALA 269 n 269 ALA 269 A MET 270 n 270 MET 270 A GLY 271 n 271 GLY 271 A TYR 272 n 272 TYR 272 A ALA 273 n 273 ALA 273 A ASP 274 n 274 ASP 274 A GLY 275 n 275 GLY 275 A TYR 276 n 276 TYR 276 A PRO 277 n 277 PRO 277 A ARG 278 n 278 ARG 278 A HIS 279 n 279 HIS 279 A ALA 280 n 280 ALA 280 A ALA 281 n 281 ALA 281 A ASP 282 n 282 ASP 282 A GLY 283 n 283 GLY 283 A THR 284 n 284 THR 284 A LEU 285 n 285 LEU 285 A VAL 286 n 286 VAL 286 A PHE 287 n 287 PHE 287 A ILE 288 n 288 ILE 288 A ASP 289 n 289 ASP 289 A GLY 290 n 290 GLY 290 A LYS 291 n 291 LYS 291 A PRO 292 n 292 PRO 292 A GLY 293 n 293 GLY 293 A ARG 294 n 294 ARG 294 A LEU 295 n 295 LEU 295 A VAL 296 n 296 VAL 296 A GLY 297 n 297 GLY 297 A ARG 298 n 298 ARG 298 A VAL 299 n 299 VAL 299 A SER 300 n 300 SER 300 A MET 301 n 301 MET 301 A ASP 302 n 302 ASP 302 A MET 303 n 303 MET 303 A LEU 304 n 304 LEU 304 A THR 305 n 305 THR 305 A VAL 306 n 306 VAL 306 A ASP 307 n 307 ASP 307 A LEU 308 n 308 LEU 308 A THR 309 n 309 THR 309 A ASP 310 n 310 ASP 310 A HIS 311 n 311 HIS 311 A PRO 312 n 312 PRO 312 A GLN 313 n 313 GLN 313 A ALA 314 n 314 ALA 314 A GLY 315 n 315 GLY 315 A LEU 316 n 316 LEU 316 A GLY 317 n 317 GLY 317 A SER 318 n 318 SER 318 A ARG 319 n 319 ARG 319 A VAL 320 n 320 VAL 320 A GLU 321 n 321 GLU 321 A LEU 322 n 322 LEU 322 A TRP 323 n 323 TRP 323 A GLY 324 n 324 GLY 324 A PRO 325 n 325 PRO 325 A ASN 326 n 326 ASN 326 A VAL 327 n 327 VAL 327 A PRO 328 n 328 PRO 328 A VAL 329 n 329 VAL 329 A GLY 330 n 330 GLY 330 A ALA 331 n 331 ALA 331 A LEU 332 n 332 LEU 332 A ALA 333 n 333 ALA 333 A ALA 334 n 334 ALA 334 A GLN 335 n 335 GLN 335 A PHE 336 n 336 PHE 336 A GLY 337 n 337 GLY 337 A SER 338 n 338 SER 338 A ILE 339 n 339 ILE 339 A PRO 340 n 340 PRO 340 A TYR 341 n 341 TYR 341 A GLN 342 n 342 GLN 342 A LEU 343 n 343 LEU 343 A LEU 344 n 344 LEU 344 A CYS 345 n 345 CYS 345 A ASN 346 n 346 ASN 346 A LEU 347 n 347 LEU 347 A LYS 348 n 348 LYS 348 A ARG 349 n 349 ARG 349 A VAL 350 n 350 VAL 350 A PRO 351 n 351 PRO 351 A ARG 352 n 352 ARG 352 A VAL 353 n 353 VAL 353 A TYR 354 n 354 TYR 354 A SER 355 n 355 SER 355 A GLY 356 n 356 GLY 356 A ALA 357 n 357 ALA 357 A author_and_software_defined_assembly PISA,PQS 2 dimeric 6950 -18 25330 A KCX 122 LYSINE NZ-CARBOXYLIC ACID A KCX 122 LYS 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_565 x,-y+1,-z crystal symmetry operation 0.0000000000 76.1290000000 0.0000000000 A O LYS 291 A O LYS 291 A N ILE 288 A N ILE 288 A N PHE 287 A N PHE 287 A O GLU 321 A O GLU 321 A O LEU 322 A O LEU 322 A N LEU 235 A N LEU 235 A N LEU 245 A N LEU 245 A O GLN 263 A O GLN 263 A N VAL 268 A N VAL 268 A O LEU 304 A O LEU 304 A O LYS 291 A O LYS 291 A N ILE 288 A N ILE 288 A N PHE 287 A N PHE 287 A O GLU 321 A O GLU 321 A O LEU 322 A O LEU 322 A N LEU 235 A N LEU 235 A O THR 234 A O THR 234 A N LEU 7 A N LEU 7 A N ILE 8 A N ILE 8 A O VAL 353 A O VAL 353 A O SER 189 A O SER 189 A N MET 155 A N MET 155 A O MET 156 A O MET 156 A N LEU 121 A N LEU 121 A O TRP 120 A O TRP 120 A N VAL 99 A N VAL 99 A O TRP 96 A O TRP 96 A N ILE 75 A N ILE 75 A O LEU 76 A O LEU 76 A N VAL 57 A N VAL 57 A O GLY 54 A O GLY 54 A N ALA 30 A N ALA 30 A N ARG 27 A N ARG 27 A O VAL 207 A O VAL 207 A N VAL 251 A N VAL 251 A O TYR 257 A O TYR 257 1 A HOH 507 D HOH 1 A HOH 511 D HOH 1 A HOH 706 D HOH 1 A HOH 728 D HOH 1 A A C4A NZ PLP DLY 358 359 2.14 A 1 3.20 0.50 120.30 123.50 A A A NE CZ NH1 ARG ARG ARG 2 2 2 N 1 3.71 0.50 120.30 124.01 A A A NE CZ NH1 ARG ARG ARG 5 5 5 N 1 -9.91 1.40 123.60 113.69 A A A CD NE CZ ARG ARG ARG 21 21 21 N 1 -4.00 0.50 120.30 116.30 A A A NE CZ NH1 ARG ARG ARG 21 21 21 N 1 3.07 0.50 120.30 123.37 A A A NE CZ NH2 ARG ARG ARG 21 21 21 N 1 4.02 0.50 120.30 124.32 A A A NE CZ NH1 ARG ARG ARG 67 67 67 N 1 12.04 1.40 123.60 135.64 A A A CD NE CZ ARG ARG ARG 115 115 115 N 1 -3.54 0.50 120.30 116.76 A A A NE CZ NH2 ARG ARG ARG 115 115 115 N 1 3.16 0.50 120.30 123.46 A A A NE CZ NH2 ARG ARG ARG 143 143 143 N 1 -3.10 0.50 120.30 117.20 A A A NE CZ NH1 ARG ARG ARG 169 169 169 N 1 7.30 0.50 120.30 127.60 A A A NE CZ NH1 ARG ARG ARG 208 208 208 N 1 -3.86 0.50 120.30 116.44 A A A NE CZ NH2 ARG ARG ARG 208 208 208 N 1 -4.59 0.50 120.30 115.71 A A A NE CZ NH2 ARG ARG ARG 243 243 243 N 1 -3.79 0.50 120.30 116.51 A A A NE CZ NH2 ARG ARG ARG 261 261 261 N 1 -3.52 0.50 120.30 116.78 A A A NE CZ NH2 ARG ARG ARG 264 264 264 N 1 3.61 0.50 120.30 123.91 A A A NE CZ NH1 ARG ARG ARG 294 294 294 N 1 -3.26 0.50 120.30 117.04 A A A NE CZ NH2 ARG ARG ARG 319 319 319 N 1 6.37 0.60 121.00 127.37 A A A CB CG CD1 TYR TYR TYR 341 341 341 N 1 4.13 0.50 120.30 124.43 A A A NE CZ NH2 ARG ARG ARG 352 352 352 N 1 A ARG 129 -102.12 -101.91 1 A ALA 151 -92.35 -104.16 1 A SER 204 -176.74 128.57 1 A ARG 349 69.42 -47.45 22.7 0.206 0.149 0.153 1.45 30.0 2559 54137 49538 random 1 anisotropic THROUGHOUT 2.0 MAD Engh & Huber 1.45 30.0 306 3084 25 0 2753 0.01 2.18 17.9 1.45 99.0 1RCQ 56981 56981 0.03 1 51.5 6.3 84.7 0.15 1.45 1.48 3.9 1603 1 36.2 data reduction DENZO data scaling SCALEPACK phasing SOLVE refinement SHELXL-97 catabolic alanine racemase DadX (E.C.5.1.1.1) The 1.45 A crystal structure of alanine racemase from a pathogenic bacterium, Pseudomonas aeruginosa, contains both internal and external aldimine forms 1 N N 2 N N 3 N N 4 N N The second monomer of the biological assembly is generated by a two-fold axis: x, -y+1, -z A LEU 10 A LEU 10 HELX_P A GLY 25 A GLY 25 1 1 16 A ILE 32 A ILE 32 HELX_P A GLY 38 A GLY 38 1 2 7 A GLY 40 A GLY 40 HELX_P A ALA 49 A ALA 49 1 3 10 A CYS 59 A CYS 59 HELX_P A ALA 69 A ALA 69 1 4 11 A GLU 83 A GLU 83 HELX_P A SER 85 A SER 85 5 5 3 A GLU 86 A GLU 86 HELX_P A HIS 93 A HIS 93 1 6 8 A CYS 101 A CYS 101 HELX_P A ALA 111 A ALA 111 1 7 11 A PHE 133 A PHE 133 HELX_P A SER 147 A SER 147 1 8 15 A PRO 168 A PRO 168 HELX_P A GLN 182 A GLN 182 1 9 15 A ASN 192 A ASN 192 HELX_P A TRP 199 A TRP 199 1 10 8 A GLY 210 A GLY 210 HELX_P A GLY 215 A GLY 215 5 11 6 A LEU 225 A LEU 225 HELX_P A LEU 229 A LEU 229 5 12 5 A GLY 252 A GLY 252 HELX_P A ARG 256 A ARG 256 5 13 5 A GLY 271 A GLY 271 HELX_P A GLY 275 A GLY 275 5 14 5 A PRO 328 A PRO 328 HELX_P A PHE 336 A PHE 336 1 15 9 A ILE 339 A ILE 339 HELX_P A ASN 346 A ASN 346 1 16 8 covale 1.307 A A LYS 33 A NZ LYS 33 1_555 A PLP 358 B C4A PLP 1_555 covale 1.784 B A LYS 33 A NZ LYS 33 1_555 A PLP 358 B C4A PLP 1_555 covale 1.334 A LEU 121 A C LEU 121 1_555 A KCX 122 A N KCX 122 1_555 covale 1.325 A KCX 122 A C KCX 122 1_555 A MET 123 A N MET 123 1_555 covale 1.306 B A PLP 358 B C4A PLP 1_555 A DLY 359 C NZ DLY 1_555 ISOMERASE alpha-beta barrel, beta-structure for c-terminal domain, internal/external aldimine forms, ISOMERASE ALR2_PSEAE UNP 1 1 Q9HTQ2 MRPARALIDLQALRHNYRLAREATGARALAVIKADAYGHGAVRCAEALAAEADGFAVACIEEGLELREAGIRQPILLLEG FFEASELELIVAHDFWCVVHCAWQLEAIERASLARPLNVWLKMDSGMHRVGFFPEDFRAAHERLRASGKVAKIVMMSHFS RADELDCPRTEEQLAAFSAASQGLEGEISLRNSPAVLGWPKVPSDWVRPGILLYGATPFERAHPLADRLRPVMTLESKVI SVRDLPAGEPVGYGARYSTERRQRIGVVAMGYADGYPRHAADGTLVFIDGKPGRLVGRVSMDMLTVDLTDHPQAGLGSRV ELWGPNVPVGALAAQFGSIPYQLLCNLKRVPRVYSGA 1 357 1RCQ 1 357 Q9HTQ2 A 1 1 357 1 LYS MODIFIED RESIDUE KCX 122 1RCQ A Q9HTQ2 UNP 122 122 6 6 8 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel parallel parallel parallel parallel parallel parallel parallel anti-parallel A LYS 291 A LYS 291 A ARG 294 A ARG 294 A LEU 285 A LEU 285 A ILE 288 A ILE 288 A ARG 319 A ARG 319 A TRP 323 A TRP 323 A MET 233 A MET 233 A LEU 245 A LEU 245 A GLN 263 A GLN 263 A VAL 268 A VAL 268 A LEU 304 A LEU 304 A ASP 307 A ASP 307 A LYS 291 A LYS 291 A ARG 294 A ARG 294 A LEU 285 A LEU 285 A ILE 288 A ILE 288 A ARG 319 A ARG 319 A TRP 323 A TRP 323 A MET 233 A MET 233 A LEU 245 A LEU 245 A ARG 5 A ARG 5 A ASP 9 A ASP 9 A ARG 352 A ARG 352 A SER 355 A SER 355 A ILE 188 A ILE 188 A SER 189 A SER 189 A VAL 150 A VAL 150 A MET 156 A MET 156 A LEU 117 A LEU 117 A KCX 122 A KCX 122 A PHE 95 A PHE 95 A VAL 99 A VAL 99 A ILE 75 A ILE 75 A LEU 77 A LEU 77 A GLY 54 A GLY 54 A VAL 57 A VAL 57 A ARG 27 A ARG 27 A VAL 31 A VAL 31 A TRP 206 A TRP 206 A VAL 207 A VAL 207 A PRO 250 A PRO 250 A VAL 251 A VAL 251 A TYR 257 A TYR 257 A SER 258 A SER 258 BINDING SITE FOR RESIDUE PLP A 358 Software 16 BINDING SITE FOR RESIDUE DLY A 359 Software 14 A VAL 31 A VAL 31 16 1_555 A LYS 33 A LYS 33 16 1_555 A TYR 37 A TYR 37 16 1_555 A KCX 122 A KCX 122 16 1_555 A ARG 129 A ARG 129 16 1_555 A HIS 158 A HIS 158 16 1_555 A ASN 192 A ASN 192 16 1_555 A SER 193 A SER 193 16 1_555 A PRO 194 A PRO 194 16 1_555 A ARG 208 A ARG 208 16 1_555 A GLY 210 A GLY 210 16 1_555 A ILE 211 A ILE 211 16 1_555 A TYR 341 A TYR 341 16 1_555 A DLY 359 C DLY 16 1_555 A HOH 531 D HOH 16 1_555 A HOH 603 D HOH 16 1_555 A LYS 33 A LYS 33 14 1_555 A TYR 37 A TYR 37 14 1_555 A ARG 129 A ARG 129 14 1_555 A TYR 253 A TYR 253 14 4_565 A TYR 272 A TYR 272 14 4_565 A SER 300 A SER 300 14 4_565 A MET 301 A MET 301 14 4_565 A ASP 302 A ASP 302 14 4_565 A MET 303 A MET 303 14 4_565 A TYR 341 A TYR 341 14 1_555 A PLP 358 B PLP 14 1_555 A HOH 518 D HOH 14 4_565 A HOH 601 D HOH 14 1_555 A HOH 603 D HOH 14 1_555 20 C 2 2 21