0.013656 0.000000 0.000000 0.000000 0.009292 0.000000 0.000000 0.000000 0.007351 0.00000 0.00000 0.00000 Carter, W.J. Myles, T. Leung, L.L. Huntington, J.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 73.230 107.620 136.030 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C6 H12 O6 180.156 beta-D-mannopyranose beta-D-mannose; D-mannose; mannose D-saccharide, beta linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C6 H12 O5 164.156 alpha-L-fucopyranose alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose L-saccharide, alpha linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C6 H12 O6 180.156 alpha-D-mannopyranose alpha-D-mannose; D-mannose; mannose D-saccharide, alpha linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-alpha-D-glucopyranose N-acetyl-alpha-D-glucosamine; 2-acetamido-2-deoxy-alpha-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE D-saccharide, alpha linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 R C N 75 S C N 76 S C N 77 S C N 78 R C N 79 N C N 80 N O N 81 N O N 82 N O N 83 N O N 84 N O N 85 N O N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N N N 99 R C N 100 N C N 101 N O N 102 N C N 103 N S N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 R C N 113 S C N 114 R C N 115 S C N 116 S C N 117 N C N 118 N O N 119 N O N 120 N O N 121 N O N 122 N O N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N N N 136 S C N 137 N C N 138 N O N 139 N C N 140 N C N 141 N C N 142 N O N 143 N N N 144 N O N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N N N 156 S C N 157 N C N 158 N O N 159 N C N 160 N C N 161 N C N 162 N O N 163 N O N 164 N O N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N N N 175 N C N 176 N C N 177 N O N 178 N O N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N C N 185 N O N 186 N C N 187 N O N 188 N C N 189 N O N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N N N 199 S C N 200 N C N 201 N O N 202 N C Y 203 N C Y 204 N N Y 205 N C Y 206 N C Y 207 N N N 208 N O N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N O N 220 N H N 221 N H N 222 N N N 223 S C N 224 N C N 225 N O N 226 S C N 227 N C N 228 N C N 229 N C N 230 N O N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N N N 245 S C N 246 N C N 247 N O N 248 N C N 249 N C N 250 N C N 251 N C N 252 N O N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N N N 267 S C N 268 N C N 269 N O N 270 N C N 271 N C N 272 N C N 273 N C N 274 N N N 275 N O N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 S C N 292 S C N 293 S C N 294 S C N 295 R C N 296 N C N 297 N O N 298 N O N 299 N O N 300 N O N 301 N O N 302 N O N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N N N 316 S C N 317 N C N 318 N O N 319 N C N 320 N C N 321 N S N 322 N C N 323 N O N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 R C N 336 R C N 337 R C N 338 S C N 339 R C N 340 N C N 341 N C N 342 N C N 343 N N N 344 N O N 345 N O N 346 N O N 347 N O N 348 N O N 349 N O N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 S C N 366 R C N 367 R C N 368 S C N 369 R C N 370 N C N 371 N C N 372 N C N 373 N O N 374 N O N 375 N O N 376 N O N 377 N O N 378 N N N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N N N 396 S C N 397 N C N 398 N O N 399 N C Y 400 N C Y 401 N C Y 402 N C Y 403 N C Y 404 N C Y 405 N C N 406 N O N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N P N 419 N O N 420 N O N 421 N O N 422 N O N 423 N N N 424 S C N 425 N C N 426 N O N 427 N C N 428 N C N 429 N C N 430 N O N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N N N 441 S C N 442 N C N 443 N O N 444 N C N 445 N O N 446 N O N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N N N 455 S C N 456 N C N 457 N O N 458 R C N 459 N O N 460 N C N 461 N O N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N N N 472 S C N 473 N C N 474 N O N 475 N C Y 476 N C Y 477 N C Y 478 N C Y 479 N N Y 480 N C Y 481 N C Y 482 N C Y 483 N C Y 484 N C N 485 N O N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N N N 499 S C N 500 N C N 501 N O N 502 N C Y 503 N C Y 504 N C Y 505 N C Y 506 N C Y 507 N C Y 508 N C N 509 N O N 510 N O N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 519 N H N 520 N H N 521 N H N 522 N N N 523 S C N 524 N C N 525 N O N 526 N C N 527 N C N 528 N C N 529 N O N 530 N H N 531 N H N 532 N H N 533 N H N 534 N H N 535 N H N 536 N H N 537 N H N 538 N H N 539 N H N 540 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N doub N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N doub N 196 N sing N 197 N sing N 198 N sing N 199 N sing Y 200 N sing Y 201 N doub Y 202 N doub N 203 N sing Y 204 N sing N 205 N sing Y 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N doub N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N doub N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N doub N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N doub N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N doub N 388 N sing N 389 N sing N 390 N sing N 391 N sing Y 392 N doub Y 393 N sing Y 394 N sing N 395 N sing Y 396 N doub N 397 N sing Y 398 N doub N 399 N sing Y 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N doub N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N doub N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N doub N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N doub N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N doub N 461 N sing N 462 N sing N 463 N sing N 464 N sing Y 465 N doub Y 466 N sing Y 467 N sing N 468 N sing Y 469 N doub Y 470 N sing Y 471 N sing N 472 N sing Y 473 N sing Y 474 N doub N 475 N sing Y 476 N doub N 477 N sing Y 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N doub N 489 N sing N 490 N sing N 491 N sing N 492 N sing Y 493 N doub Y 494 N sing Y 495 N sing N 496 N sing Y 497 N doub N 498 N sing Y 499 N doub N 500 N sing Y 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N doub N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 279 26387 26394 10.1074/jbc.M402364200 15075325 Crystal Structure of Anticoagulant Thrombin Variant E217K Provides Insights into Thrombin Allostery 2004 10.2210/pdb1rd3/pdb pdb_00001rd3 NAG E 1 HAS WRONG CHIRALITY AT ATOM C1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2003-10-10 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 0.9795 1.0 PX14.2 SRS 0.9795 SYNCHROTRON SRS BEAMLINE PX14.2 4096.534 Prothrombin 3.4.21.5 Thrombin light chain 2 man polymer 29780.285 Prothrombin 3.4.21.5 Thrombin heavy chain E217K 2 man polymer 894.823 alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 570.542 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 94.971 PHOSPHATE ION 3 syn non-polymer 92.094 GLYCEROL 6 syn non-polymer 18.015 water 44 nat water Coagulation factor II Coagulation factor II no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR A,C polypeptide(L) no no IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGKGCDRDGKYGFY THVFRLKKWIQKVIDQFGE IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGKGCDRDGKYGFY THVFRLKKWIQKVIDQFGE B,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample F2 9606 Homo sapiens 36483 Cricetinae gen. sp. BHK-21 human Homo sample F2 9606 Homo sapiens 36483 Cricetinae gen. sp. BHK-21 1 3.95 68.89 VAPOR DIFFUSION, HANGING DROP 7.4 sodium tris, potassium phosphate, glycerol, PEG 8000, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 295K 295 atom_site chem_comp database_PDB_caveat entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_validate_chiral struct_asym struct_conn struct_site struct_site_gen chem_comp database_2 struct_ref_seq_dif chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Carbohydrate remediation repository Remediation Version format compliance Derived calculations Version format compliance Advisory Atomic model Data collection Derived calculations Structure summary Database references Structure summary Data collection Refinement description 1 0 2004-05-04 1 1 2008-04-29 1 2 2011-07-13 2 0 2020-07-29 2 1 2021-10-27 2 2 2023-08-23 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.name _chem_comp.type _pdbx_struct_assembly_gen.asym_id_list _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details X NAG 1 n E NAG 1 X NAG 3 n E NDG 2 X MAN 4 n E BMA 3 X MAN 5 n E MAN 4 X FUC 2 n E FUC 5 Z NAG 1 n F NAG 1 Z NAG 3 n F NDG 2 Z FUC 2 n F FUC 3 DManpb b-D-mannopyranose b-D-Manp Man LFucpa a-L-fucopyranose a-L-Fucp Fuc DManpa a-D-mannopyranose a-D-Manp Man DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc DGlcpNAca N-acetyl-a-D-glucopyranosamine a-D-GlcpNAc GlcNAc RCSB Y RCSB 2003-11-05 REL REL oligosaccharide oligosaccharide DManpa1-6DManpb1-4DGlcpNAca1-4[LFucpa1-6]DGlcpNAcb1- 3 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/5,5,4/[a2122h-1b_1-5_2*NCC/3=O][a2122h-1a_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5]/1-2-3-4-5/a4-b1_a6-e1_b4-c1_c6-d1 3 PDB2Glycan 1.1.0 WURCS []{[(4+1)][a-D-GlcpNAc]{[(4+1)][a-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(6+1)][a-D-Manp]{}}}[(6+1)][a-L-Fucp]{}}} 3 PDB-CARE LINUCS DGlcpNAca1-4[LFucpa1-6]DGlcpNAcb1- 4 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/3,3,2/[a2122h-1b_1-5_2*NCC/3=O][a2122h-1a_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3/a4-b1_a6-c1 4 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][a-D-GlcpNAc]{}[(6+1)][a-L-Fucp]{}}} 4 PDB-CARE LINUCS C1 O4 NDG NAG 2 1 3 O1 HO4 sing C1 O4 BMA NDG 3 2 3 O1 HO4 sing C1 O6 MAN BMA 4 3 3 O1 HO6 sing C1 O6 FUC NAG 5 1 3 O1 HO6 sing C1 O4 NDG NAG 2 1 4 O1 HO4 sing C1 O6 FUC NAG 3 1 4 O1 HO6 sing n n n n n n n n PO4 PHOSPHATE ION GOL GLYCEROL HOH water 1DOJ PDB ENTRY 1DOJ PDB experimental model PO4 1 5 PO4 PO4 248 B PO4 3 5 PO4 PO4 249 B GOL 1 6 GOL GOL 250 B GOL 2 6 GOL GOL 251 B GOL 3 6 GOL GOL 252 B GOL 4 6 GOL GOL 253 B GOL 6 6 GOL GOL 254 B PO4 2 5 PO4 PO4 248 D GOL 5 6 GOL GOL 249 D HOH 2 7 HOH HOH 18 A HOH 3 7 HOH HOH 19 A HOH 1 7 HOH HOH 255 B HOH 4 7 HOH HOH 256 B HOH 5 7 HOH HOH 257 B HOH 6 7 HOH HOH 258 B HOH 7 7 HOH HOH 259 B HOH 8 7 HOH HOH 260 B HOH 12 7 HOH HOH 261 B HOH 14 7 HOH HOH 262 B HOH 15 7 HOH HOH 263 B HOH 16 7 HOH HOH 264 B HOH 18 7 HOH HOH 265 B HOH 19 7 HOH HOH 266 B HOH 20 7 HOH HOH 267 B HOH 21 7 HOH HOH 268 B HOH 30 7 HOH HOH 269 B HOH 31 7 HOH HOH 270 B HOH 32 7 HOH HOH 271 B HOH 33 7 HOH HOH 272 B HOH 34 7 HOH HOH 273 B HOH 35 7 HOH HOH 274 B HOH 36 7 HOH HOH 275 B HOH 37 7 HOH HOH 276 B HOH 38 7 HOH HOH 277 B HOH 10 7 HOH HOH 17 C HOH 22 7 HOH HOH 18 C HOH 9 7 HOH HOH 250 D HOH 11 7 HOH HOH 251 D HOH 13 7 HOH HOH 252 D HOH 17 7 HOH HOH 253 D HOH 23 7 HOH HOH 254 D HOH 24 7 HOH HOH 255 D HOH 25 7 HOH HOH 256 D HOH 26 7 HOH HOH 257 D HOH 27 7 HOH HOH 258 D HOH 28 7 HOH HOH 259 D HOH 29 7 HOH HOH 260 D HOH 39 7 HOH HOH 261 D HOH 40 7 HOH HOH 262 D HOH 41 7 HOH HOH 263 D HOH 42 7 HOH HOH 264 D HOH 43 7 HOH HOH 265 D HOH 44 7 HOH HOH 266 D THR 1 n 1 H THR 1 A PHE 1 n 2 G PHE 1 A GLY 1 n 3 F GLY 1 A SER 1 n 4 E SER 1 A GLY 1 n 5 D GLY 1 A GLU 1 n 6 C GLU 1 A ALA 1 n 7 B ALA 1 A ASP 1 n 8 A ASP 1 A CYS 1 n 9 CYS 1 A GLY 2 n 10 GLY 2 A LEU 3 n 11 LEU 3 A ARG 4 n 12 ARG 4 A PRO 5 n 13 PRO 5 A LEU 6 n 14 LEU 6 A PHE 7 n 15 PHE 7 A GLU 8 n 16 GLU 8 A LYS 9 n 17 LYS 9 A LYS 10 n 18 LYS 10 A SER 11 n 19 SER 11 A LEU 12 n 20 LEU 12 A GLU 13 n 21 GLU 13 A ASP 14 n 22 ASP 14 A LYS 14 n 23 A LYS 14 A THR 14 n 24 B THR 14 A GLU 14 n 25 C GLU 14 A ARG 14 n 26 D ARG 14 A GLU 14 n 27 E GLU 14 A LEU 14 n 28 F LEU 14 A LEU 14 n 29 G LEU 14 A GLU 14 n 30 H GLU 14 A SER 14 n 31 I SER 14 A TYR 14 n 32 J TYR 14 A ILE 14 n 33 K ILE 14 A n 34 L 14 A n 35 M 14 A n 36 15 A ILE 16 n 1 ILE 16 B VAL 17 n 2 VAL 17 B GLU 18 n 3 GLU 18 B GLY 19 n 4 GLY 19 B SER 20 n 5 SER 20 B ASP 21 n 6 ASP 21 B ALA 22 n 7 ALA 22 B GLU 23 n 8 GLU 23 B ILE 24 n 9 ILE 24 B GLY 25 n 10 GLY 25 B MET 26 n 11 MET 26 B SER 27 n 12 SER 27 B PRO 28 n 13 PRO 28 B TRP 29 n 14 TRP 29 B GLN 30 n 15 GLN 30 B VAL 31 n 16 VAL 31 B MET 32 n 17 MET 32 B LEU 33 n 18 LEU 33 B PHE 34 n 19 PHE 34 B ARG 35 n 20 ARG 35 B LYS 36 n 21 LYS 36 B SER 36 n 22 A SER 36 B PRO 37 n 23 PRO 37 B GLN 38 n 24 GLN 38 B GLU 39 n 25 GLU 39 B LEU 40 n 26 LEU 40 B LEU 41 n 27 LEU 41 B CYS 42 n 28 CYS 42 B GLY 43 n 29 GLY 43 B ALA 44 n 30 ALA 44 B SER 45 n 31 SER 45 B LEU 46 n 32 LEU 46 B ILE 47 n 33 ILE 47 B SER 48 n 34 SER 48 B ASP 49 n 35 ASP 49 B ARG 50 n 36 ARG 50 B TRP 51 n 37 TRP 51 B VAL 52 n 38 VAL 52 B LEU 53 n 39 LEU 53 B THR 54 n 40 THR 54 B ALA 55 n 41 ALA 55 B ALA 56 n 42 ALA 56 B HIS 57 n 43 HIS 57 B CYS 58 n 44 CYS 58 B LEU 59 n 45 LEU 59 B LEU 60 n 46 LEU 60 B TYR 60 n 47 A TYR 60 B PRO 60 n 48 B PRO 60 B PRO 60 n 49 C PRO 60 B TRP 60 n 50 D TRP 60 B ASP 60 n 51 E ASP 60 B LYS 60 n 52 F LYS 60 B ASN 60 n 53 G ASN 60 B PHE 60 n 54 H PHE 60 B THR 60 n 55 I THR 60 B GLU 61 n 56 GLU 61 B ASN 62 n 57 ASN 62 B ASP 63 n 58 ASP 63 B LEU 64 n 59 LEU 64 B LEU 65 n 60 LEU 65 B VAL 66 n 61 VAL 66 B ARG 67 n 62 ARG 67 B ILE 68 n 63 ILE 68 B GLY 69 n 64 GLY 69 B LYS 70 n 65 LYS 70 B HIS 71 n 66 HIS 71 B SER 72 n 67 SER 72 B ARG 73 n 68 ARG 73 B THR 74 n 69 THR 74 B ARG 75 n 70 ARG 75 B TYR 76 n 71 TYR 76 B GLU 77 n 72 GLU 77 B ARG 77 n 73 A ARG 77 B ASN 78 n 74 ASN 78 B ILE 79 n 75 ILE 79 B GLU 80 n 76 GLU 80 B LYS 81 n 77 LYS 81 B ILE 82 n 78 ILE 82 B SER 83 n 79 SER 83 B MET 84 n 80 MET 84 B LEU 85 n 81 LEU 85 B GLU 86 n 82 GLU 86 B LYS 87 n 83 LYS 87 B ILE 88 n 84 ILE 88 B TYR 89 n 85 TYR 89 B ILE 90 n 86 ILE 90 B HIS 91 n 87 HIS 91 B PRO 92 n 88 PRO 92 B ARG 93 n 89 ARG 93 B TYR 94 n 90 TYR 94 B ASN 95 n 91 ASN 95 B TRP 96 n 92 TRP 96 B ARG 97 n 93 ARG 97 B GLU 97 n 94 A GLU 97 B ASN 98 n 95 ASN 98 B LEU 99 n 96 LEU 99 B ASP 100 n 97 ASP 100 B ARG 101 n 98 ARG 101 B ASP 102 n 99 ASP 102 B ILE 103 n 100 ILE 103 B ALA 104 n 101 ALA 104 B LEU 105 n 102 LEU 105 B MET 106 n 103 MET 106 B LYS 107 n 104 LYS 107 B LEU 108 n 105 LEU 108 B LYS 109 n 106 LYS 109 B LYS 110 n 107 LYS 110 B PRO 111 n 108 PRO 111 B VAL 112 n 109 VAL 112 B ALA 113 n 110 ALA 113 B PHE 114 n 111 PHE 114 B SER 115 n 112 SER 115 B ASP 116 n 113 ASP 116 B TYR 117 n 114 TYR 117 B ILE 118 n 115 ILE 118 B HIS 119 n 116 HIS 119 B PRO 120 n 117 PRO 120 B VAL 121 n 118 VAL 121 B CYS 122 n 119 CYS 122 B LEU 123 n 120 LEU 123 B PRO 124 n 121 PRO 124 B ASP 125 n 122 ASP 125 B ARG 126 n 123 ARG 126 B GLU 127 n 124 GLU 127 B THR 128 n 125 THR 128 B ALA 129 n 126 ALA 129 B ALA 129 n 127 A ALA 129 B SER 129 n 128 B SER 129 B LEU 129 n 129 C LEU 129 B LEU 130 n 130 LEU 130 B GLN 131 n 131 GLN 131 B ALA 132 n 132 ALA 132 B GLY 133 n 133 GLY 133 B TYR 134 n 134 TYR 134 B LYS 135 n 135 LYS 135 B GLY 136 n 136 GLY 136 B ARG 137 n 137 ARG 137 B VAL 138 n 138 VAL 138 B THR 139 n 139 THR 139 B GLY 140 n 140 GLY 140 B TRP 141 n 141 TRP 141 B GLY 142 n 142 GLY 142 B ASN 143 n 143 ASN 143 B LEU 144 n 144 LEU 144 B LYS 145 n 145 LYS 145 B GLU 146 n 146 GLU 146 B THR 147 n 147 THR 147 B TRP 147 n 148 A TRP 147 B THR 147 n 149 B THR 147 B ALA 147 n 150 C ALA 147 B ASN 147 n 151 D ASN 147 B VAL 147 n 152 E VAL 147 B GLY 148 n 153 GLY 148 B LYS 149 n 154 LYS 149 B GLY 150 n 155 GLY 150 B GLN 151 n 156 GLN 151 B PRO 152 n 157 PRO 152 B SER 153 n 158 SER 153 B VAL 154 n 159 VAL 154 B LEU 155 n 160 LEU 155 B GLN 156 n 161 GLN 156 B VAL 157 n 162 VAL 157 B VAL 158 n 163 VAL 158 B ASN 159 n 164 ASN 159 B LEU 160 n 165 LEU 160 B PRO 161 n 166 PRO 161 B ILE 162 n 167 ILE 162 B VAL 163 n 168 VAL 163 B GLU 164 n 169 GLU 164 B ARG 165 n 170 ARG 165 B PRO 166 n 171 PRO 166 B VAL 167 n 172 VAL 167 B CYS 168 n 173 CYS 168 B LYS 169 n 174 LYS 169 B ASP 170 n 175 ASP 170 B SER 171 n 176 SER 171 B THR 172 n 177 THR 172 B ARG 173 n 178 ARG 173 B ILE 174 n 179 ILE 174 B ARG 175 n 180 ARG 175 B ILE 176 n 181 ILE 176 B THR 177 n 182 THR 177 B ASP 178 n 183 ASP 178 B ASN 179 n 184 ASN 179 B MET 180 n 185 MET 180 B PHE 181 n 186 PHE 181 B CYS 182 n 187 CYS 182 B ALA 183 n 188 ALA 183 B GLY 184 n 189 GLY 184 B TYR 184 n 190 A TYR 184 B LYS 185 n 191 LYS 185 B PRO 186 n 192 PRO 186 B ASP 186 n 193 A ASP 186 B GLU 186 n 194 B GLU 186 B GLY 186 n 195 C GLY 186 B LYS 186 n 196 D LYS 186 B ARG 187 n 197 ARG 187 B GLY 188 n 198 GLY 188 B ASP 189 n 199 ASP 189 B ALA 190 n 200 ALA 190 B CYS 191 n 201 CYS 191 B GLU 192 n 202 GLU 192 B GLY 193 n 203 GLY 193 B ASP 194 n 204 ASP 194 B SER 195 n 205 SER 195 B GLY 196 n 206 GLY 196 B GLY 197 n 207 GLY 197 B PRO 198 n 208 PRO 198 B PHE 199 n 209 PHE 199 B VAL 200 n 210 VAL 200 B MET 201 n 211 MET 201 B LYS 202 n 212 LYS 202 B SER 203 n 213 SER 203 B PRO 204 n 214 PRO 204 B PHE 204 n 215 A PHE 204 B ASN 204 n 216 B ASN 204 B ASN 205 n 217 ASN 205 B ARG 206 n 218 ARG 206 B TRP 207 n 219 TRP 207 B TYR 208 n 220 TYR 208 B GLN 209 n 221 GLN 209 B MET 210 n 222 MET 210 B GLY 211 n 223 GLY 211 B ILE 212 n 224 ILE 212 B VAL 213 n 225 VAL 213 B SER 214 n 226 SER 214 B TRP 215 n 227 TRP 215 B GLY 216 n 228 GLY 216 B LYS 217 n 229 LYS 217 B GLY 219 n 230 GLY 219 B CYS 220 n 231 CYS 220 B ASP 221 n 232 ASP 221 B ARG 221 n 233 A ARG 221 B ASP 222 n 234 ASP 222 B GLY 223 n 235 GLY 223 B LYS 224 n 236 LYS 224 B TYR 225 n 237 TYR 225 B GLY 226 n 238 GLY 226 B PHE 227 n 239 PHE 227 B TYR 228 n 240 TYR 228 B THR 229 n 241 THR 229 B HIS 230 n 242 HIS 230 B VAL 231 n 243 VAL 231 B PHE 232 n 244 PHE 232 B ARG 233 n 245 ARG 233 B LEU 234 n 246 LEU 234 B LYS 235 n 247 LYS 235 B LYS 236 n 248 LYS 236 B TRP 237 n 249 TRP 237 B ILE 238 n 250 ILE 238 B GLN 239 n 251 GLN 239 B LYS 240 n 252 LYS 240 B VAL 241 n 253 VAL 241 B ILE 242 n 254 ILE 242 B ASP 243 n 255 ASP 243 B GLN 244 n 256 GLN 244 B PHE 245 n 257 PHE 245 B GLY 246 n 258 GLY 246 B GLU 247 n 259 GLU 247 B n 1 H 1 C n 2 G 1 C n 3 F 1 C SER 1 n 4 E SER 1 C GLY 1 n 5 D GLY 1 C GLU 1 n 6 C GLU 1 C ALA 1 n 7 B ALA 1 C ASP 1 n 8 A ASP 1 C CYS 1 n 9 CYS 1 C GLY 2 n 10 GLY 2 C LEU 3 n 11 LEU 3 C ARG 4 n 12 ARG 4 C PRO 5 n 13 PRO 5 C LEU 6 n 14 LEU 6 C PHE 7 n 15 PHE 7 C GLU 8 n 16 GLU 8 C LYS 9 n 17 LYS 9 C LYS 10 n 18 LYS 10 C SER 11 n 19 SER 11 C LEU 12 n 20 LEU 12 C GLU 13 n 21 GLU 13 C ASP 14 n 22 ASP 14 C LYS 14 n 23 A LYS 14 C THR 14 n 24 B THR 14 C GLU 14 n 25 C GLU 14 C ARG 14 n 26 D ARG 14 C GLU 14 n 27 E GLU 14 C LEU 14 n 28 F LEU 14 C LEU 14 n 29 G LEU 14 C GLU 14 n 30 H GLU 14 C SER 14 n 31 I SER 14 C TYR 14 n 32 J TYR 14 C ILE 14 n 33 K ILE 14 C ASP 14 n 34 L ASP 14 C n 35 M 14 C n 36 15 C ILE 16 n 1 ILE 16 D VAL 17 n 2 VAL 17 D GLU 18 n 3 GLU 18 D GLY 19 n 4 GLY 19 D SER 20 n 5 SER 20 D ASP 21 n 6 ASP 21 D ALA 22 n 7 ALA 22 D GLU 23 n 8 GLU 23 D ILE 24 n 9 ILE 24 D GLY 25 n 10 GLY 25 D MET 26 n 11 MET 26 D SER 27 n 12 SER 27 D PRO 28 n 13 PRO 28 D TRP 29 n 14 TRP 29 D GLN 30 n 15 GLN 30 D VAL 31 n 16 VAL 31 D MET 32 n 17 MET 32 D LEU 33 n 18 LEU 33 D PHE 34 n 19 PHE 34 D ARG 35 n 20 ARG 35 D LYS 36 n 21 LYS 36 D SER 36 n 22 A SER 36 D PRO 37 n 23 PRO 37 D GLN 38 n 24 GLN 38 D GLU 39 n 25 GLU 39 D LEU 40 n 26 LEU 40 D LEU 41 n 27 LEU 41 D CYS 42 n 28 CYS 42 D GLY 43 n 29 GLY 43 D ALA 44 n 30 ALA 44 D SER 45 n 31 SER 45 D LEU 46 n 32 LEU 46 D ILE 47 n 33 ILE 47 D SER 48 n 34 SER 48 D ASP 49 n 35 ASP 49 D ARG 50 n 36 ARG 50 D TRP 51 n 37 TRP 51 D VAL 52 n 38 VAL 52 D LEU 53 n 39 LEU 53 D THR 54 n 40 THR 54 D ALA 55 n 41 ALA 55 D ALA 56 n 42 ALA 56 D HIS 57 n 43 HIS 57 D CYS 58 n 44 CYS 58 D LEU 59 n 45 LEU 59 D LEU 60 n 46 LEU 60 D TYR 60 n 47 A TYR 60 D PRO 60 n 48 B PRO 60 D PRO 60 n 49 C PRO 60 D TRP 60 n 50 D TRP 60 D ASP 60 n 51 E ASP 60 D LYS 60 n 52 F LYS 60 D ASN 60 n 53 G ASN 60 D PHE 60 n 54 H PHE 60 D THR 60 n 55 I THR 60 D GLU 61 n 56 GLU 61 D ASN 62 n 57 ASN 62 D ASP 63 n 58 ASP 63 D LEU 64 n 59 LEU 64 D LEU 65 n 60 LEU 65 D VAL 66 n 61 VAL 66 D ARG 67 n 62 ARG 67 D ILE 68 n 63 ILE 68 D GLY 69 n 64 GLY 69 D LYS 70 n 65 LYS 70 D HIS 71 n 66 HIS 71 D SER 72 n 67 SER 72 D ARG 73 n 68 ARG 73 D THR 74 n 69 THR 74 D ARG 75 n 70 ARG 75 D TYR 76 n 71 TYR 76 D GLU 77 n 72 GLU 77 D ARG 77 n 73 A ARG 77 D ASN 78 n 74 ASN 78 D ILE 79 n 75 ILE 79 D GLU 80 n 76 GLU 80 D LYS 81 n 77 LYS 81 D ILE 82 n 78 ILE 82 D SER 83 n 79 SER 83 D MET 84 n 80 MET 84 D LEU 85 n 81 LEU 85 D GLU 86 n 82 GLU 86 D LYS 87 n 83 LYS 87 D ILE 88 n 84 ILE 88 D TYR 89 n 85 TYR 89 D ILE 90 n 86 ILE 90 D HIS 91 n 87 HIS 91 D PRO 92 n 88 PRO 92 D ARG 93 n 89 ARG 93 D TYR 94 n 90 TYR 94 D ASN 95 n 91 ASN 95 D TRP 96 n 92 TRP 96 D ARG 97 n 93 ARG 97 D GLU 97 n 94 A GLU 97 D ASN 98 n 95 ASN 98 D LEU 99 n 96 LEU 99 D ASP 100 n 97 ASP 100 D ARG 101 n 98 ARG 101 D ASP 102 n 99 ASP 102 D ILE 103 n 100 ILE 103 D ALA 104 n 101 ALA 104 D LEU 105 n 102 LEU 105 D MET 106 n 103 MET 106 D LYS 107 n 104 LYS 107 D LEU 108 n 105 LEU 108 D LYS 109 n 106 LYS 109 D LYS 110 n 107 LYS 110 D PRO 111 n 108 PRO 111 D VAL 112 n 109 VAL 112 D ALA 113 n 110 ALA 113 D PHE 114 n 111 PHE 114 D SER 115 n 112 SER 115 D ASP 116 n 113 ASP 116 D TYR 117 n 114 TYR 117 D ILE 118 n 115 ILE 118 D HIS 119 n 116 HIS 119 D PRO 120 n 117 PRO 120 D VAL 121 n 118 VAL 121 D CYS 122 n 119 CYS 122 D LEU 123 n 120 LEU 123 D PRO 124 n 121 PRO 124 D ASP 125 n 122 ASP 125 D ARG 126 n 123 ARG 126 D GLU 127 n 124 GLU 127 D THR 128 n 125 THR 128 D ALA 129 n 126 ALA 129 D ALA 129 n 127 A ALA 129 D SER 129 n 128 B SER 129 D LEU 129 n 129 C LEU 129 D LEU 130 n 130 LEU 130 D GLN 131 n 131 GLN 131 D ALA 132 n 132 ALA 132 D GLY 133 n 133 GLY 133 D TYR 134 n 134 TYR 134 D LYS 135 n 135 LYS 135 D GLY 136 n 136 GLY 136 D ARG 137 n 137 ARG 137 D VAL 138 n 138 VAL 138 D THR 139 n 139 THR 139 D GLY 140 n 140 GLY 140 D TRP 141 n 141 TRP 141 D GLY 142 n 142 GLY 142 D ASN 143 n 143 ASN 143 D LEU 144 n 144 LEU 144 D LYS 145 n 145 LYS 145 D GLU 146 n 146 GLU 146 D THR 147 n 147 THR 147 D TRP 147 n 148 A TRP 147 D THR 147 n 149 B THR 147 D ALA 147 n 150 C ALA 147 D ASN 147 n 151 D ASN 147 D VAL 147 n 152 E VAL 147 D GLY 148 n 153 GLY 148 D LYS 149 n 154 LYS 149 D GLY 150 n 155 GLY 150 D GLN 151 n 156 GLN 151 D PRO 152 n 157 PRO 152 D SER 153 n 158 SER 153 D VAL 154 n 159 VAL 154 D LEU 155 n 160 LEU 155 D GLN 156 n 161 GLN 156 D VAL 157 n 162 VAL 157 D VAL 158 n 163 VAL 158 D ASN 159 n 164 ASN 159 D LEU 160 n 165 LEU 160 D PRO 161 n 166 PRO 161 D ILE 162 n 167 ILE 162 D VAL 163 n 168 VAL 163 D GLU 164 n 169 GLU 164 D ARG 165 n 170 ARG 165 D PRO 166 n 171 PRO 166 D VAL 167 n 172 VAL 167 D CYS 168 n 173 CYS 168 D LYS 169 n 174 LYS 169 D ASP 170 n 175 ASP 170 D SER 171 n 176 SER 171 D THR 172 n 177 THR 172 D ARG 173 n 178 ARG 173 D ILE 174 n 179 ILE 174 D ARG 175 n 180 ARG 175 D ILE 176 n 181 ILE 176 D THR 177 n 182 THR 177 D ASP 178 n 183 ASP 178 D ASN 179 n 184 ASN 179 D MET 180 n 185 MET 180 D PHE 181 n 186 PHE 181 D CYS 182 n 187 CYS 182 D ALA 183 n 188 ALA 183 D GLY 184 n 189 GLY 184 D TYR 184 n 190 A TYR 184 D LYS 185 n 191 LYS 185 D PRO 186 n 192 PRO 186 D ASP 186 n 193 A ASP 186 D GLU 186 n 194 B GLU 186 D GLY 186 n 195 C GLY 186 D LYS 186 n 196 D LYS 186 D ARG 187 n 197 ARG 187 D GLY 188 n 198 GLY 188 D ASP 189 n 199 ASP 189 D ALA 190 n 200 ALA 190 D CYS 191 n 201 CYS 191 D GLU 192 n 202 GLU 192 D GLY 193 n 203 GLY 193 D ASP 194 n 204 ASP 194 D SER 195 n 205 SER 195 D GLY 196 n 206 GLY 196 D GLY 197 n 207 GLY 197 D PRO 198 n 208 PRO 198 D PHE 199 n 209 PHE 199 D VAL 200 n 210 VAL 200 D MET 201 n 211 MET 201 D LYS 202 n 212 LYS 202 D SER 203 n 213 SER 203 D PRO 204 n 214 PRO 204 D PHE 204 n 215 A PHE 204 D ASN 204 n 216 B ASN 204 D ASN 205 n 217 ASN 205 D ARG 206 n 218 ARG 206 D TRP 207 n 219 TRP 207 D TYR 208 n 220 TYR 208 D GLN 209 n 221 GLN 209 D MET 210 n 222 MET 210 D GLY 211 n 223 GLY 211 D ILE 212 n 224 ILE 212 D VAL 213 n 225 VAL 213 D SER 214 n 226 SER 214 D TRP 215 n 227 TRP 215 D GLY 216 n 228 GLY 216 D LYS 217 n 229 LYS 217 D GLY 219 n 230 GLY 219 D CYS 220 n 231 CYS 220 D ASP 221 n 232 ASP 221 D ARG 221 n 233 A ARG 221 D ASP 222 n 234 ASP 222 D GLY 223 n 235 GLY 223 D LYS 224 n 236 LYS 224 D TYR 225 n 237 TYR 225 D GLY 226 n 238 GLY 226 D PHE 227 n 239 PHE 227 D TYR 228 n 240 TYR 228 D THR 229 n 241 THR 229 D HIS 230 n 242 HIS 230 D VAL 231 n 243 VAL 231 D PHE 232 n 244 PHE 232 D ARG 233 n 245 ARG 233 D LEU 234 n 246 LEU 234 D LYS 235 n 247 LYS 235 D LYS 236 n 248 LYS 236 D TRP 237 n 249 TRP 237 D ILE 238 n 250 ILE 238 D GLN 239 n 251 GLN 239 D LYS 240 n 252 LYS 240 D VAL 241 n 253 VAL 241 D ILE 242 n 254 ILE 242 D ASP 243 n 255 ASP 243 D GLN 244 n 256 GLN 244 D PHE 245 n 257 PHE 245 D GLY 246 n 258 GLY 246 D n 259 247 D author_defined_assembly 4 tetrameric software_defined_assembly PISA,PQS 2 dimeric software_defined_assembly PISA,PQS 2 dimeric 4870 -3 13650 3470 -8 13410 G B ASN 60 GLYCOSYLATION SITE B ASN 53 ASN G D ASN 60 GLYCOSYLATION SITE D ASN 53 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 B N SER 20 B N SER 5 B O VAL 157 B O VAL 162 B N VAL 163 B N VAL 168 B O CYS 182 B O CYS 187 B N PHE 181 B N PHE 186 B O TYR 228 B O TYR 240 B O THR 229 B O THR 241 B N ILE 212 B N ILE 224 B O TYR 208 B O TYR 220 B N MET 201 B N MET 211 B O VAL 200 B O VAL 210 B N ARG 137 B N ARG 137 B N GLY 136 B N GLY 136 B O LEU 160 B O LEU 165 B N LEU 33 B N LEU 18 B O LEU 41 B O LEU 27 B N SER 45 B N SER 31 B O LEU 53 B O LEU 39 B N VAL 52 B N VAL 38 B O MET 106 B O MET 103 B O LEU 105 B O LEU 102 B N TYR 89 B N TYR 85 B O SER 83 B O SER 79 B N VAL 66 B N VAL 61 B O LEU 65 B O LEU 60 B N PHE 34 B N PHE 19 A B N TYR 60 B N TYR 47 F B O LYS 60 B O LYS 52 D N SER 20 D N SER 5 D O VAL 157 D O VAL 162 D O VAL 158 D O VAL 163 D N VAL 138 D N VAL 138 D N ARG 137 D N ARG 137 D O VAL 200 D O VAL 210 D N MET 201 D N MET 211 D O TYR 208 D O TYR 220 D N TRP 215 D N TRP 227 D O PHE 227 D O PHE 239 D O TYR 228 D O TYR 240 D N PHE 181 D N PHE 186 D N LEU 33 D N LEU 18 D O LEU 41 D O LEU 27 D N SER 45 D N SER 31 D O LEU 53 D O LEU 39 D N THR 54 D N THR 40 D O ALA 104 D O ALA 101 D O LEU 105 D O LEU 102 D N TYR 89 D N TYR 85 D O LYS 81 D O LYS 77 D N ILE 68 D N ILE 63 D O LEU 65 D O LEU 60 D N PHE 34 D N PHE 19 A D N TYR 60 D N TYR 47 F D O LYS 60 D O LYS 52 E 1 A OG SER 1 A OG SER 4 1 Y 1 B CD ARG 75 B CD ARG 70 1 Y 1 B NE ARG 75 B NE ARG 70 1 Y 1 B CZ ARG 75 B CZ ARG 70 1 Y 1 B NH1 ARG 75 B NH1 ARG 70 1 Y 1 B NH2 ARG 75 B NH2 ARG 70 1 Y 1 B CG LYS 149 B CG LYS 154 1 Y 1 B CD LYS 149 B CD LYS 154 1 Y 1 B CE LYS 149 B CE LYS 154 1 Y 1 B NZ LYS 149 B NZ LYS 154 1 Y 1 B CZ ARG 175 B CZ ARG 180 1 Y 1 B NH1 ARG 175 B NH1 ARG 180 1 Y 1 B NH2 ARG 175 B NH2 ARG 180 1 Y B 1 B CG GLU 186 B CG GLU 194 1 Y B 1 B CD GLU 186 B CD GLU 194 1 Y B 1 B OE1 GLU 186 B OE1 GLU 194 1 Y B 1 B OE2 GLU 186 B OE2 GLU 194 1 Y 1 B CD ARG 187 B CD ARG 197 1 Y 1 B NE ARG 187 B NE ARG 197 1 Y 1 B CZ ARG 187 B CZ ARG 197 1 Y 1 B NH1 ARG 187 B NH1 ARG 197 1 Y 1 B NH2 ARG 187 B NH2 ARG 197 1 Y 1 B CD LYS 236 B CD LYS 248 1 Y 1 B CE LYS 236 B CE LYS 248 1 Y 1 B NZ LYS 236 B NZ LYS 248 1 Y 1 B CE LYS 240 B CE LYS 252 1 Y 1 B NZ LYS 240 B NZ LYS 252 1 Y D 1 C NE ARG 14 C NE ARG 26 1 Y D 1 C CZ ARG 14 C CZ ARG 26 1 Y D 1 C NH1 ARG 14 C NH1 ARG 26 1 Y D 1 C NH2 ARG 14 C NH2 ARG 26 1 Y 1 D CG ARG 50 D CG ARG 36 1 Y 1 D CD ARG 50 D CD ARG 36 1 Y 1 D NE ARG 50 D NE ARG 36 1 Y 1 D CZ ARG 50 D CZ ARG 36 1 Y 1 D NH1 ARG 50 D NH1 ARG 36 1 Y 1 D NH2 ARG 50 D NH2 ARG 36 1 Y 1 D CG LYS 110 D CG LYS 107 1 Y 1 D CD LYS 110 D CD LYS 107 1 Y 1 D CE LYS 110 D CE LYS 107 1 Y 1 D NZ LYS 110 D NZ LYS 107 1 Y 1 D CG LYS 149 D CG LYS 154 1 Y 1 D CD LYS 149 D CD LYS 154 1 Y 1 D CE LYS 149 D CE LYS 154 1 Y 1 D NZ LYS 149 D NZ LYS 154 1 Y 1 D CD ARG 187 D CD ARG 197 1 Y 1 D NE ARG 187 D NE ARG 197 1 Y 1 D CZ ARG 187 D CZ ARG 197 1 Y 1 D NH1 ARG 187 D NH1 ARG 197 1 Y 1 D NH2 ARG 187 D NH2 ARG 197 1 Y 1 D CD LYS 236 D CD LYS 248 1 Y 1 D CE LYS 236 D CE LYS 248 1 Y 1 D NZ LYS 236 D NZ LYS 248 1 Y L 1 A ASP 14 A ASP 34 1 Y M 1 A GLY 14 A GLY 35 1 Y 1 A ARG 15 A ARG 36 1 Y H 1 C THR 1 C THR 1 1 Y G 1 C PHE 1 C PHE 2 1 Y F 1 C GLY 1 C GLY 3 1 Y M 1 C GLY 14 C GLY 35 1 Y 1 C ARG 15 C ARG 36 1 Y 1 D GLU 247 D GLU 259 1 Y 1 E C1 NAG 1 WRONG HAND F F F 1 -15.79 2.50 113.10 97.31 A A A N CA C GLY GLY GLY 1 1 1 N C C C 1 -16.75 2.50 113.10 96.35 B B B N CA C GLY GLY GLY 186 186 186 N E 1 A SER 1 -0.85 -126.40 1 A PHE 7 -139.47 -90.92 A 1 B TYR 60 -158.25 83.99 G 1 B ASN 60 -157.45 84.17 1 B THR 74 -79.86 -72.88 A 1 B ARG 77 -36.03 125.59 1 B ASN 78 51.94 14.34 1 B ASN 98 -142.74 13.99 1 B SER 115 -169.13 -166.31 1 B GLU 146 -28.83 126.31 D 1 B ASN 147 71.93 140.35 A 1 B ASP 186 -76.74 40.71 1 C PHE 7 -132.85 -82.54 1 D GLN 38 -60.48 92.11 1 D SER 48 172.50 177.44 A 1 D TYR 60 -156.99 84.28 1 D GLU 61 -36.48 -31.40 1 D THR 74 -86.03 -86.33 1 D ARG 75 -39.28 132.32 1 D ILE 79 -132.92 -53.20 A 1 D GLU 97 -112.05 -71.07 1 D SER 115 -170.46 -166.63 1 D GLU 146 -27.65 132.14 B 1 D THR 147 -86.58 -154.51 D 1 D ASN 147 79.69 136.53 A 1 D ASP 186 -59.93 -85.83 B 1 D GLU 186 -23.87 130.55 1 D GLN 244 -174.70 -30.34 41.6 -17.31 .00 .00 24.46 .00 -7.15 0.259 0.229 2.50 43.36 1894 36862 36862 97.1 random 1 THROUGHOUT 0 0 MOLECULAR REPLACEMENT PDB ENTRY 1DOJ Engh & Huber .41 .36 5.00 .62 .62 2.50 43.36 44 4828 149 0 4635 0.007 1.5 0.392 .024 0.383 2.66 272 88.1 45.4 2.5 60.54 1RD3 36976 36929 0 0 0.142 0.142 1 4.7 9.2 99.9 0.633 2.5 2.67 1.5 5856 0.687 1 2.9 89.3 data reduction MOSFLM data scaling SCALA phasing MOLREP refinement CNS 1.0 data scaling CCP4 (SCALA) 2.5A Structure of Anticoagulant Thrombin Variant E217K 1 N N 2 N N 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 6 N N 6 N N 6 N N 6 N N 6 N N 5 N N 6 N N 7 N N 7 N N 7 N N 7 N N A GLY 1 A GLY 5 HELX_P A CYS 1 A CYS 9 5 1 5 D A THR 14 A THR 24 HELX_P A SER 14 A SER 31 1 2 8 B I B ALA 55 B ALA 41 HELX_P B LEU 59 B LEU 45 1 3 5 B PRO 60 B PRO 48 HELX_P B ASP 60 B ASP 51 5 4 4 B E B THR 60 B THR 55 HELX_P B ASN 62 B ASN 57 5 5 3 I B ASP 125 B ASP 122 HELX_P B LEU 130 B LEU 130 1 6 9 B GLU 164 B GLU 169 HELX_P B THR 172 B THR 177 1 7 9 B CYS 191 B CYS 201 HELX_P B SER 195 B SER 205 5 8 5 B LEU 234 B LEU 246 HELX_P B GLY 246 B GLY 258 1 9 13 C GLY 1 C GLY 5 HELX_P C CYS 1 C CYS 9 5 10 5 D C PHE 7 C PHE 15 HELX_P C SER 11 C SER 19 5 11 5 C THR 14 C THR 24 HELX_P C ILE 14 C ILE 33 1 12 10 B K D ALA 55 D ALA 41 HELX_P D CYS 58 D CYS 44 5 13 4 D PRO 60 D PRO 48 HELX_P D ASP 60 D ASP 51 5 14 4 B E D ASP 125 D ASP 122 HELX_P D LEU 130 D LEU 130 1 15 9 D GLU 164 D GLU 169 HELX_P D ASP 170 D ASP 175 1 16 7 D CYS 191 D CYS 201 HELX_P D SER 195 D SER 205 5 17 5 D LEU 234 D LEU 246 HELX_P D GLY 246 D GLY 258 1 18 13 disulf 2.037 A CYS 1 A SG CYS 9 1_555 B CYS 122 B SG CYS 119 1_555 disulf 2.033 B CYS 42 B SG CYS 28 1_555 B CYS 58 B SG CYS 44 1_555 disulf 2.025 B CYS 168 B SG CYS 173 1_555 B CYS 182 B SG CYS 187 1_555 disulf 2.038 B CYS 191 B SG CYS 201 1_555 B CYS 220 B SG CYS 231 1_555 disulf 2.037 C CYS 1 C SG CYS 9 1_555 D CYS 122 D SG CYS 119 1_555 disulf 2.028 D CYS 42 D SG CYS 28 1_555 D CYS 58 D SG CYS 44 1_555 disulf 2.033 D CYS 168 D SG CYS 173 1_555 D CYS 182 D SG CYS 187 1_555 disulf 2.036 D CYS 191 D SG CYS 201 1_555 D CYS 220 D SG CYS 231 1_555 covale 1.452 one G N-Glycosylation B ASN 60 B ND2 ASN 53 1_555 E NAG 1 E C1 NAG 1_555 covale 1.454 one G N-Glycosylation D ASN 60 D ND2 ASN 53 1_555 F NAG 1 F C1 NAG 1_555 covale 1.389 both E NAG 1 E O4 NAG 1_555 E NDG 2 E C1 NDG 1_555 covale 1.408 both E NAG 1 E O6 NAG 1_555 E FUC 5 E C1 FUC 1_555 covale 1.389 both E NDG 2 E O4 NDG 1_555 E BMA 3 E C1 BMA 1_555 covale 1.406 both E BMA 3 E O6 BMA 1_555 E MAN 4 E C1 MAN 1_555 covale 1.395 both F NAG 1 F O4 NAG 1_555 F NDG 2 F C1 NDG 1_555 covale 1.403 both F NAG 1 F O6 NAG 1_555 F FUC 3 F C1 FUC 1_555 HYDROLASE HYDROLASE B SER 36 B SER 22 A 1 B PRO 37 B PRO 23 -0.34 D SER 36 D SER 22 A 1 D PRO 37 D PRO 23 -0.20 THRB_HUMAN UNP 1 328 P00734 TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR THRB_HUMAN UNP 2 364 P00734 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE 328 363 1RD3 1 15 P00734 H A 1 1 36 328 363 1RD3 1 15 P00734 H C 1 1 36 364 622 1RD3 16 247 P00734 B 2 1 259 364 622 1RD3 16 247 P00734 D 2 1 259 3 GLU engineered mutation LYS 145 1RD3 B P00734 UNP 592 145 4 GLU engineered mutation LYS 145 1RD3 D P00734 UNP 592 145 8 7 2 7 7 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel B SER 20 B SER 5 B ASP 21 B ASP 6 B GLN 156 B GLN 161 B VAL 163 B VAL 168 B MET 180 B MET 185 B ALA 183 B ALA 188 B GLY 226 B GLY 238 B HIS 230 B HIS 242 B TRP 207 B TRP 219 B TRP 215 B TRP 227 B PRO 198 B PRO 208 B LYS 202 B LYS 212 B LYS 135 B LYS 135 B GLY 140 B GLY 140 B GLN 156 B GLN 161 B VAL 163 B VAL 168 B GLN 30 B GLN 15 B ARG 35 B ARG 20 B GLU 39 B GLU 25 B LEU 46 B LEU 32 B TRP 51 B TRP 37 B THR 54 B THR 40 B ALA 104 B ALA 101 B LEU 108 B LEU 105 B LYS 81 B LYS 77 B ILE 90 B ILE 86 B LEU 64 B LEU 59 B ILE 68 B ILE 63 B GLN 30 B GLN 15 B ARG 35 B ARG 20 B LEU 60 B LEU 46 B TYR 60 B TYR 47 A B LYS 60 B LYS 52 B ASN 60 B ASN 53 F G D SER 20 D SER 5 D ASP 21 D ASP 6 D GLN 156 D GLN 161 D PRO 161 D PRO 166 D LYS 135 D LYS 135 D GLY 140 D GLY 140 D PRO 198 D PRO 208 D LYS 202 D LYS 212 D TRP 207 D TRP 219 D TRP 215 D TRP 227 D GLY 226 D GLY 238 D HIS 230 D HIS 242 D MET 180 D MET 185 D ALA 183 D ALA 188 D GLN 30 D GLN 15 D ARG 35 D ARG 20 D GLU 39 D GLU 25 D LEU 46 D LEU 32 D TRP 51 D TRP 37 D THR 54 D THR 40 D ALA 104 D ALA 101 D LEU 108 D LEU 105 D LYS 81 D LYS 77 D ILE 90 D ILE 86 D LEU 64 D LEU 59 D ILE 68 D ILE 63 D GLN 30 D GLN 15 D ARG 35 D ARG 20 D LEU 60 D LEU 46 D TYR 60 D TYR 47 A D LYS 60 D LYS 52 D ASN 60 D ASN 53 F G 19 P 21 21 21