0.035651
0.007988
0.005314
0.000000
0.028317
0.005613
0.000000
0.000000
0.014701
0.00000
0.00000
0.00000
Nakagawa, A.
Hosaka, H.
Nakashima, T.
Tanaka, I.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
99.58
95.86
102.63
28.050
36.190
69.710
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
SE
N
238
N
C
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
C
N
351
N
C
N
352
N
O
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
doub
N
324
N
sing
Y
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
UK
EMBO J.
EMJODG
0897
0261-4189
18
1459
1467
10.1093/emboj/18.6.1459
10075918
The three-dimensional structure of the RNA-binding domain of ribosomal protein L2; a protein at the peptidyl transferase center of the ribosome.
1999
US
J.Struct.Biol.
JSBIEM
0803
1047-8477
124
99
101
Crystallization and preliminary X-ray crystallographic study of a 23S rRNA binding domain of the ribosomal protein L2 from Bacillus stearothermophilus
1998
10.2210/pdb1rl2/pdb
pdb_00001rl2
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
FOCUSING MIRRORS
IMAGE PLATE
1998-05-15
RIGAKU
SI(111)
MAD
M
x-ray
1
0.9000
1.0
0.9785
1.0
0.9788
1.0
BL-18B
Photon Factory
0.9000, 0.9785, 0.9788
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-18B
14930.819
PROTEIN (RIBOSOMAL PROTEIN L2)
METHIONINES ARE SUBSTITUED BY SELONOMETHIONINE
2
man
polymer
18.015
water
109
nat
water
no
yes
QYRIIDFKRDKDGIPGRVATIEYDPNRSANIALINYADGEKRYIIAPKNLKVG(MSE)EI(MSE)SGPDADIKIGNALPL
ENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKEGKYVIVRLASGEVR(MSE)ILGKCRATVGEVGN
QYRIIDFKRDKDGIPGRVATIEYDPNRSANIALINYADGEKRYIIAPKNLKVGMEIMSGPDADIKIGNALPLENIPVGTL
VHNIELKPGRGGQLVRAAGTSAQVLGKEGKYVIVRLASGEVRMILGKCRATVGEVGN
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Geobacillus
Escherichia
sample
1422
Geobacillus stearothermophilus
L2
562
Escherichia coli
BL21(DE3)LYSS
PLASMID
PET-22B
1
2.18
43
DATA WERE COLLECTED USING THE WEISSENBERG METHOD
6.5
PROTEIN WAS CRYSTALLIZED FROM 15% PEK20000 IN 0.1M MES PH6, pH 6.5
PEK20000
1
MES
1
citation_author
chem_comp_atom
chem_comp_bond
database_2
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Database references
Data collection
Database references
Derived calculations
1
0
1999-04-02
1
1
2008-04-26
1
2
2011-07-13
1
3
2018-01-24
1
4
2023-12-27
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
BNL
Y
RCSB
1999-03-25
REL
HOH
water
HOH
1
2
HOH
HOH
197
A
HOH
2
2
HOH
HOH
198
A
HOH
3
2
HOH
HOH
199
A
HOH
4
2
HOH
HOH
200
A
HOH
5
2
HOH
HOH
201
A
HOH
6
2
HOH
HOH
202
A
HOH
7
2
HOH
HOH
203
A
HOH
8
2
HOH
HOH
204
A
HOH
9
2
HOH
HOH
205
A
HOH
10
2
HOH
HOH
206
A
HOH
11
2
HOH
HOH
207
A
HOH
12
2
HOH
HOH
208
A
HOH
13
2
HOH
HOH
209
A
HOH
14
2
HOH
HOH
210
A
HOH
15
2
HOH
HOH
211
A
HOH
16
2
HOH
HOH
212
A
HOH
17
2
HOH
HOH
213
A
HOH
18
2
HOH
HOH
214
A
HOH
19
2
HOH
HOH
215
A
HOH
20
2
HOH
HOH
216
A
HOH
21
2
HOH
HOH
217
A
HOH
22
2
HOH
HOH
218
A
HOH
23
2
HOH
HOH
219
A
HOH
24
2
HOH
HOH
220
A
HOH
25
2
HOH
HOH
221
A
HOH
26
2
HOH
HOH
222
A
HOH
27
2
HOH
HOH
223
A
HOH
28
2
HOH
HOH
224
A
HOH
29
2
HOH
HOH
225
A
HOH
30
2
HOH
HOH
226
A
HOH
31
2
HOH
HOH
227
A
HOH
32
2
HOH
HOH
228
A
HOH
33
2
HOH
HOH
229
A
HOH
34
2
HOH
HOH
230
A
HOH
35
2
HOH
HOH
231
A
HOH
36
2
HOH
HOH
232
A
HOH
37
2
HOH
HOH
233
A
HOH
38
2
HOH
HOH
234
A
HOH
39
2
HOH
HOH
235
A
HOH
40
2
HOH
HOH
236
A
HOH
41
2
HOH
HOH
237
A
HOH
42
2
HOH
HOH
238
A
HOH
43
2
HOH
HOH
239
A
HOH
44
2
HOH
HOH
240
A
HOH
45
2
HOH
HOH
241
A
HOH
46
2
HOH
HOH
242
A
HOH
47
2
HOH
HOH
243
A
HOH
48
2
HOH
HOH
244
A
HOH
49
2
HOH
HOH
245
A
HOH
50
2
HOH
HOH
246
A
HOH
51
2
HOH
HOH
247
A
HOH
52
2
HOH
HOH
248
A
HOH
53
2
HOH
HOH
249
A
HOH
54
2
HOH
HOH
250
A
HOH
55
2
HOH
HOH
251
A
HOH
56
2
HOH
HOH
252
A
HOH
57
2
HOH
HOH
253
A
HOH
58
2
HOH
HOH
254
A
HOH
59
2
HOH
HOH
255
A
HOH
60
2
HOH
HOH
256
A
HOH
61
2
HOH
HOH
257
A
HOH
62
2
HOH
HOH
258
A
HOH
63
2
HOH
HOH
259
A
HOH
64
2
HOH
HOH
260
A
HOH
65
2
HOH
HOH
261
A
HOH
71
2
HOH
HOH
262
A
HOH
66
2
HOH
HOH
197
B
HOH
67
2
HOH
HOH
198
B
HOH
68
2
HOH
HOH
199
B
HOH
69
2
HOH
HOH
200
B
HOH
70
2
HOH
HOH
201
B
HOH
72
2
HOH
HOH
202
B
HOH
73
2
HOH
HOH
203
B
HOH
74
2
HOH
HOH
204
B
HOH
75
2
HOH
HOH
205
B
HOH
76
2
HOH
HOH
206
B
HOH
77
2
HOH
HOH
207
B
HOH
78
2
HOH
HOH
208
B
HOH
79
2
HOH
HOH
209
B
HOH
80
2
HOH
HOH
210
B
HOH
81
2
HOH
HOH
211
B
HOH
82
2
HOH
HOH
212
B
HOH
83
2
HOH
HOH
213
B
HOH
84
2
HOH
HOH
214
B
HOH
85
2
HOH
HOH
215
B
HOH
86
2
HOH
HOH
216
B
HOH
87
2
HOH
HOH
217
B
HOH
88
2
HOH
HOH
218
B
HOH
89
2
HOH
HOH
219
B
HOH
90
2
HOH
HOH
220
B
HOH
91
2
HOH
HOH
221
B
HOH
92
2
HOH
HOH
222
B
HOH
93
2
HOH
HOH
223
B
HOH
94
2
HOH
HOH
224
B
HOH
95
2
HOH
HOH
225
B
HOH
96
2
HOH
HOH
226
B
HOH
97
2
HOH
HOH
227
B
HOH
98
2
HOH
HOH
228
B
HOH
99
2
HOH
HOH
229
B
HOH
100
2
HOH
HOH
230
B
HOH
101
2
HOH
HOH
231
B
HOH
102
2
HOH
HOH
232
B
HOH
103
2
HOH
HOH
233
B
HOH
104
2
HOH
HOH
234
B
HOH
105
2
HOH
HOH
235
B
HOH
106
2
HOH
HOH
236
B
HOH
107
2
HOH
HOH
237
B
HOH
108
2
HOH
HOH
238
B
HOH
109
2
HOH
HOH
239
B
GLN
60
n
1
GLN
60
A
TYR
61
n
2
TYR
61
A
ARG
62
n
3
ARG
62
A
ILE
63
n
4
ILE
63
A
ILE
64
n
5
ILE
64
A
ASP
65
n
6
ASP
65
A
PHE
66
n
7
PHE
66
A
LYS
67
n
8
LYS
67
A
ARG
68
n
9
ARG
68
A
ASP
69
n
10
ASP
69
A
LYS
70
n
11
LYS
70
A
ASP
71
n
12
ASP
71
A
GLY
72
n
13
GLY
72
A
ILE
73
n
14
ILE
73
A
PRO
74
n
15
PRO
74
A
GLY
75
n
16
GLY
75
A
ARG
76
n
17
ARG
76
A
VAL
77
n
18
VAL
77
A
ALA
78
n
19
ALA
78
A
THR
79
n
20
THR
79
A
ILE
80
n
21
ILE
80
A
GLU
81
n
22
GLU
81
A
TYR
82
n
23
TYR
82
A
ASP
83
n
24
ASP
83
A
PRO
84
n
25
PRO
84
A
ASN
85
n
26
ASN
85
A
ARG
86
n
27
ARG
86
A
SER
87
n
28
SER
87
A
ALA
88
n
29
ALA
88
A
ASN
89
n
30
ASN
89
A
ILE
90
n
31
ILE
90
A
ALA
91
n
32
ALA
91
A
LEU
92
n
33
LEU
92
A
ILE
93
n
34
ILE
93
A
ASN
94
n
35
ASN
94
A
TYR
95
n
36
TYR
95
A
ALA
96
n
37
ALA
96
A
ASP
97
n
38
ASP
97
A
GLY
98
n
39
GLY
98
A
GLU
99
n
40
GLU
99
A
LYS
100
n
41
LYS
100
A
ARG
101
n
42
ARG
101
A
TYR
102
n
43
TYR
102
A
ILE
103
n
44
ILE
103
A
ILE
104
n
45
ILE
104
A
ALA
105
n
46
ALA
105
A
PRO
106
n
47
PRO
106
A
LYS
107
n
48
LYS
107
A
ASN
108
n
49
ASN
108
A
LEU
109
n
50
LEU
109
A
LYS
110
n
51
LYS
110
A
VAL
111
n
52
VAL
111
A
GLY
112
n
53
GLY
112
A
MSE
113
n
54
MSE
113
A
GLU
114
n
55
GLU
114
A
ILE
115
n
56
ILE
115
A
MSE
116
n
57
MSE
116
A
SER
117
n
58
SER
117
A
GLY
118
n
59
GLY
118
A
PRO
119
n
60
PRO
119
A
ASP
120
n
61
ASP
120
A
ALA
121
n
62
ALA
121
A
ASP
122
n
63
ASP
122
A
ILE
123
n
64
ILE
123
A
LYS
124
n
65
LYS
124
A
ILE
125
n
66
ILE
125
A
GLY
126
n
67
GLY
126
A
ASN
127
n
68
ASN
127
A
ALA
128
n
69
ALA
128
A
LEU
129
n
70
LEU
129
A
PRO
130
n
71
PRO
130
A
LEU
131
n
72
LEU
131
A
GLU
132
n
73
GLU
132
A
ASN
133
n
74
ASN
133
A
ILE
134
n
75
ILE
134
A
PRO
135
n
76
PRO
135
A
VAL
136
n
77
VAL
136
A
GLY
137
n
78
GLY
137
A
THR
138
n
79
THR
138
A
LEU
139
n
80
LEU
139
A
VAL
140
n
81
VAL
140
A
HIS
141
n
82
HIS
141
A
ASN
142
n
83
ASN
142
A
ILE
143
n
84
ILE
143
A
GLU
144
n
85
GLU
144
A
LEU
145
n
86
LEU
145
A
LYS
146
n
87
LYS
146
A
PRO
147
n
88
PRO
147
A
GLY
148
n
89
GLY
148
A
ARG
149
n
90
ARG
149
A
GLY
150
n
91
GLY
150
A
GLY
151
n
92
GLY
151
A
GLN
152
n
93
GLN
152
A
LEU
153
n
94
LEU
153
A
VAL
154
n
95
VAL
154
A
ARG
155
n
96
ARG
155
A
ALA
156
n
97
ALA
156
A
ALA
157
n
98
ALA
157
A
GLY
158
n
99
GLY
158
A
THR
159
n
100
THR
159
A
SER
160
n
101
SER
160
A
ALA
161
n
102
ALA
161
A
GLN
162
n
103
GLN
162
A
VAL
163
n
104
VAL
163
A
LEU
164
n
105
LEU
164
A
GLY
165
n
106
GLY
165
A
LYS
166
n
107
LYS
166
A
GLU
167
n
108
GLU
167
A
GLY
168
n
109
GLY
168
A
LYS
169
n
110
LYS
169
A
TYR
170
n
111
TYR
170
A
VAL
171
n
112
VAL
171
A
ILE
172
n
113
ILE
172
A
VAL
173
n
114
VAL
173
A
ARG
174
n
115
ARG
174
A
LEU
175
n
116
LEU
175
A
ALA
176
n
117
ALA
176
A
SER
177
n
118
SER
177
A
GLY
178
n
119
GLY
178
A
GLU
179
n
120
GLU
179
A
VAL
180
n
121
VAL
180
A
ARG
181
n
122
ARG
181
A
MSE
182
n
123
MSE
182
A
ILE
183
n
124
ILE
183
A
LEU
184
n
125
LEU
184
A
GLY
185
n
126
GLY
185
A
LYS
186
n
127
LYS
186
A
CYS
187
n
128
CYS
187
A
ARG
188
n
129
ARG
188
A
ALA
189
n
130
ALA
189
A
THR
190
n
131
THR
190
A
VAL
191
n
132
VAL
191
A
GLY
192
n
133
GLY
192
A
GLU
193
n
134
GLU
193
A
VAL
194
n
135
VAL
194
A
GLY
195
n
136
GLY
195
A
n
137
196
A
GLN
60
n
1
GLN
60
B
TYR
61
n
2
TYR
61
B
ARG
62
n
3
ARG
62
B
ILE
63
n
4
ILE
63
B
ILE
64
n
5
ILE
64
B
ASP
65
n
6
ASP
65
B
PHE
66
n
7
PHE
66
B
LYS
67
n
8
LYS
67
B
ARG
68
n
9
ARG
68
B
ASP
69
n
10
ASP
69
B
LYS
70
n
11
LYS
70
B
ASP
71
n
12
ASP
71
B
GLY
72
n
13
GLY
72
B
ILE
73
n
14
ILE
73
B
PRO
74
n
15
PRO
74
B
GLY
75
n
16
GLY
75
B
ARG
76
n
17
ARG
76
B
VAL
77
n
18
VAL
77
B
ALA
78
n
19
ALA
78
B
THR
79
n
20
THR
79
B
ILE
80
n
21
ILE
80
B
GLU
81
n
22
GLU
81
B
TYR
82
n
23
TYR
82
B
ASP
83
n
24
ASP
83
B
PRO
84
n
25
PRO
84
B
ASN
85
n
26
ASN
85
B
ARG
86
n
27
ARG
86
B
SER
87
n
28
SER
87
B
ALA
88
n
29
ALA
88
B
ASN
89
n
30
ASN
89
B
ILE
90
n
31
ILE
90
B
ALA
91
n
32
ALA
91
B
LEU
92
n
33
LEU
92
B
ILE
93
n
34
ILE
93
B
ASN
94
n
35
ASN
94
B
TYR
95
n
36
TYR
95
B
ALA
96
n
37
ALA
96
B
ASP
97
n
38
ASP
97
B
GLY
98
n
39
GLY
98
B
GLU
99
n
40
GLU
99
B
LYS
100
n
41
LYS
100
B
ARG
101
n
42
ARG
101
B
TYR
102
n
43
TYR
102
B
ILE
103
n
44
ILE
103
B
ILE
104
n
45
ILE
104
B
ALA
105
n
46
ALA
105
B
PRO
106
n
47
PRO
106
B
LYS
107
n
48
LYS
107
B
ASN
108
n
49
ASN
108
B
LEU
109
n
50
LEU
109
B
LYS
110
n
51
LYS
110
B
VAL
111
n
52
VAL
111
B
GLY
112
n
53
GLY
112
B
MSE
113
n
54
MSE
113
B
GLU
114
n
55
GLU
114
B
ILE
115
n
56
ILE
115
B
MSE
116
n
57
MSE
116
B
SER
117
n
58
SER
117
B
GLY
118
n
59
GLY
118
B
PRO
119
n
60
PRO
119
B
ASP
120
n
61
ASP
120
B
ALA
121
n
62
ALA
121
B
ASP
122
n
63
ASP
122
B
ILE
123
n
64
ILE
123
B
LYS
124
n
65
LYS
124
B
ILE
125
n
66
ILE
125
B
GLY
126
n
67
GLY
126
B
ASN
127
n
68
ASN
127
B
ALA
128
n
69
ALA
128
B
LEU
129
n
70
LEU
129
B
PRO
130
n
71
PRO
130
B
LEU
131
n
72
LEU
131
B
GLU
132
n
73
GLU
132
B
ASN
133
n
74
ASN
133
B
ILE
134
n
75
ILE
134
B
PRO
135
n
76
PRO
135
B
VAL
136
n
77
VAL
136
B
GLY
137
n
78
GLY
137
B
THR
138
n
79
THR
138
B
LEU
139
n
80
LEU
139
B
VAL
140
n
81
VAL
140
B
HIS
141
n
82
HIS
141
B
ASN
142
n
83
ASN
142
B
ILE
143
n
84
ILE
143
B
GLU
144
n
85
GLU
144
B
LEU
145
n
86
LEU
145
B
LYS
146
n
87
LYS
146
B
PRO
147
n
88
PRO
147
B
GLY
148
n
89
GLY
148
B
ARG
149
n
90
ARG
149
B
GLY
150
n
91
GLY
150
B
GLY
151
n
92
GLY
151
B
GLN
152
n
93
GLN
152
B
LEU
153
n
94
LEU
153
B
VAL
154
n
95
VAL
154
B
ARG
155
n
96
ARG
155
B
ALA
156
n
97
ALA
156
B
ALA
157
n
98
ALA
157
B
GLY
158
n
99
GLY
158
B
THR
159
n
100
THR
159
B
SER
160
n
101
SER
160
B
ALA
161
n
102
ALA
161
B
GLN
162
n
103
GLN
162
B
VAL
163
n
104
VAL
163
B
LEU
164
n
105
LEU
164
B
GLY
165
n
106
GLY
165
B
LYS
166
n
107
LYS
166
B
GLU
167
n
108
GLU
167
B
GLY
168
n
109
GLY
168
B
LYS
169
n
110
LYS
169
B
TYR
170
n
111
TYR
170
B
VAL
171
n
112
VAL
171
B
ILE
172
n
113
ILE
172
B
VAL
173
n
114
VAL
173
B
ARG
174
n
115
ARG
174
B
LEU
175
n
116
LEU
175
B
ALA
176
n
117
ALA
176
B
SER
177
n
118
SER
177
B
GLY
178
n
119
GLY
178
B
GLU
179
n
120
GLU
179
B
VAL
180
n
121
VAL
180
B
ARG
181
n
122
ARG
181
B
MSE
182
n
123
MSE
182
B
ILE
183
n
124
ILE
183
B
LEU
184
n
125
LEU
184
B
GLY
185
n
126
GLY
185
B
LYS
186
n
127
LYS
186
B
CYS
187
n
128
CYS
187
B
ARG
188
n
129
ARG
188
B
ALA
189
n
130
ALA
189
B
THR
190
n
131
THR
190
B
VAL
191
n
132
VAL
191
B
GLY
192
n
133
GLY
192
B
GLU
193
n
134
GLU
193
B
VAL
194
n
135
VAL
194
B
GLY
195
n
136
GLY
195
B
ASN
196
n
137
ASN
196
B
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
A
MSE
113
SELENOMETHIONINE
A
MSE
54
MET
A
MSE
116
SELENOMETHIONINE
A
MSE
57
MET
A
MSE
182
SELENOMETHIONINE
A
MSE
123
MET
B
MSE
113
SELENOMETHIONINE
B
MSE
54
MET
B
MSE
116
SELENOMETHIONINE
B
MSE
57
MET
B
MSE
182
SELENOMETHIONINE
B
MSE
123
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ARG
101
A
O
ARG
42
A
N
ILE
93
A
N
ILE
34
A
O
ALA
88
A
O
ALA
29
A
N
ASP
83
A
N
ASP
24
A
O
LEU
129
A
O
LEU
70
A
N
ALA
189
A
N
ALA
130
A
O
GLN
162
A
O
GLN
103
A
N
ARG
174
A
N
ARG
115
B
O
ARG
101
B
O
ARG
42
B
N
ILE
93
B
N
ILE
34
B
O
ALA
88
B
O
ALA
29
B
N
ASP
83
B
N
ASP
24
B
O
LEU
129
B
O
LEU
70
B
N
ALA
189
B
N
ALA
130
B
O
GLN
162
B
O
GLN
103
B
N
ARG
174
B
N
ARG
115
1
A
ASN
196
A
ASN
137
1
Y
1
A
LYS
70
-93.02
57.25
1
A
PRO
147
-33.64
91.29
1
A
ARG
149
-58.23
-0.51
1
A
VAL
154
38.39
67.73
1
A
VAL
194
-109.63
-142.57
1
B
TYR
61
-30.83
111.10
1
B
ALA
156
-165.46
-87.66
1
B
VAL
194
-63.13
95.47
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
29.7
-4.11
4.40
-2.89
12.94
-5.80
-8.83
0.2580000
0.008
0.2030000
2.3
20
1117
11415
11415
9.8
98.6
RANDOM
1
RESTRAINED
THROUGHOUT
0.0
MAD
FLAT MODEL
46.4
0.36
0.36
0.27
5
0.41
0.30
2.3
20
109
2173
0
0
2064
0.011
1.6
26.1
1.03
2.20
1.50
3.47
2.00
3.57
2.00
4.87
2.50
1
RESTRAINTS
1
X-RAY DIFFRACTION
0.094
0.369
0.2
5
2
2
X-RAY DIFFRACTION
0.099
0.331
0.2
5
3
3
X-RAY DIFFRACTION
0.131
0.289
0.2
5
4
4
X-RAY DIFFRACTION
0.087
0.221
0.2
5
0.3240000
0.024
0.2580000
2.44
184
1668
6
9.9
97.5
15.0
2.3
40.0
1RL2
11430
0.0840000
1
8.3
3.9
98.6
0.3540000
2.3
2.42
2.1
3.9
96.8
phasing
SHARP
phasing
SOLOMON
refinement
CNS
0.5
data reduction
DENZO
data scaling
CCP4
(SCALA)
RIBOSOMAL PROTEIN L2 RNA-BINDING DOMAIN FROM BACILLUS STEAROTHERMOPHILUS
1
N
N
1
N
N
2
N
N
2
N
N
A
PRO
84
A
PRO
25
HELX_P
A
ARG
86
A
ARG
27
5
1
3
A
LEU
131
A
LEU
72
HELX_P
A
ASN
133
A
ASN
74
5
2
3
B
LEU
131
B
LEU
72
HELX_P
B
ASN
133
B
ASN
74
5
3
3
covale
1.330
both
A
GLY
112
A
C
GLY
53
1_555
A
MSE
113
A
N
MSE
54
1_555
covale
1.332
both
A
MSE
113
A
C
MSE
54
1_555
A
GLU
114
A
N
GLU
55
1_555
covale
1.327
both
A
ILE
115
A
C
ILE
56
1_555
A
MSE
116
A
N
MSE
57
1_555
covale
1.327
both
A
MSE
116
A
C
MSE
57
1_555
A
SER
117
A
N
SER
58
1_555
covale
1.325
both
A
ARG
181
A
C
ARG
122
1_555
A
MSE
182
A
N
MSE
123
1_555
covale
1.325
both
A
MSE
182
A
C
MSE
123
1_555
A
ILE
183
A
N
ILE
124
1_555
covale
1.325
both
B
GLY
112
B
C
GLY
53
1_555
B
MSE
113
B
N
MSE
54
1_555
covale
1.326
both
B
MSE
113
B
C
MSE
54
1_555
B
GLU
114
B
N
GLU
55
1_555
covale
1.327
both
B
ILE
115
B
C
ILE
56
1_555
B
MSE
116
B
N
MSE
57
1_555
covale
1.327
both
B
MSE
116
B
C
MSE
57
1_555
B
SER
117
B
N
SER
58
1_555
covale
1.329
both
B
ARG
181
B
C
ARG
122
1_555
B
MSE
182
B
N
MSE
123
1_555
covale
1.329
both
B
MSE
182
B
C
MSE
123
1_555
B
ILE
183
B
N
ILE
124
1_555
RIBOSOMAL PROTEIN
RIBOSOMAL PROTEIN, RNA-BINDING DOMAIN, PEPTIDYLTRANSFEREASE CENTER
given
-0.999427
-0.006932
0.033133
-0.014974
0.968367
-0.249082
-0.030359
-0.249436
-0.967915
-16.31700
-18.99300
27.64900
RL2_BACST
UNP
1
P04257
60
196
1RL2
60
196
P04257
A
1
1
137
60
196
1RL2
60
196
P04257
B
1
1
137
3
2
2
3
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LYS
100
A
LYS
41
A
ILE
104
A
ILE
45
A
ALA
88
A
ALA
29
A
TYR
95
A
TYR
36
A
GLY
75
A
GLY
16
A
ASP
83
A
ASP
24
A
ALA
128
A
ALA
69
A
PRO
130
A
PRO
71
A
ARG
188
A
ARG
129
A
THR
190
A
THR
131
A
GLN
162
A
GLN
103
A
GLU
167
A
GLU
108
A
TYR
170
A
TYR
111
A
ARG
174
A
ARG
115
B
LYS
100
B
LYS
41
B
ILE
104
B
ILE
45
B
ALA
88
B
ALA
29
B
TYR
95
B
TYR
36
B
GLY
75
B
GLY
16
B
ASP
83
B
ASP
24
B
ALA
128
B
ALA
69
B
PRO
130
B
PRO
71
B
ARG
188
B
ARG
129
B
THR
190
B
THR
131
B
GLN
162
B
GLN
103
B
GLU
167
B
GLU
108
B
TYR
170
B
TYR
111
B
ARG
174
B
ARG
115
1
triclinic
P 1