1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Feng, S.
Chen, J.K.
Yu, H.
Simon, J.A.
Schreiber, S.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Science
SCIEAS
0038
0036-8075
266
1241
1247
7526465
Two binding orientations for peptides to the Src SH3 domain: development of a general model for SH3-ligand interactions.
1994
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
76
933
Structural Basis for the Binding of Proline-Rich Peptides to SH3 Domains
1994
US
Science
SCIEAS
0038
0036-8075
258
1665
Solution Structure of the SH3 Domain of Src and Identification of its Ligand-Binding Site
1992
10.2210/pdb1rlp/pdb
pdb_00001rlp
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
7003.641
C-SRC TYROSINE KINASE SH3 DOMAIN
1
man
polymer
1084.314
PROLINE-RICH LIGAND RLP2 (RALPPLPRY)
1
man
polymer
no
no
GALAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVAPS
GALAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVAPS
C
polypeptide(L)
no
no
RALPPLPRY
RALPPLPRY
R
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
chicken
Gallus
Escherichia
sample
SYNTHETIC OLIGO
9031
Gallus gallus
562
Escherichia coli
PGEX-2T GENE: SYNTHETIC OLIGO
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1995-02-07
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-03-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
Y
BNL
1994-10-10
REL
REL
16
BRUNGER
refinement
X-PLOR
n
1
1
C
n
2
2
C
n
3
3
C
n
4
4
C
n
5
5
C
n
6
6
C
n
7
7
C
n
8
8
C
THR
9
n
9
THR
9
C
PHE
10
n
10
PHE
10
C
VAL
11
n
11
VAL
11
C
ALA
12
n
12
ALA
12
C
LEU
13
n
13
LEU
13
C
TYR
14
n
14
TYR
14
C
ASP
15
n
15
ASP
15
C
TYR
16
n
16
TYR
16
C
GLU
17
n
17
GLU
17
C
SER
18
n
18
SER
18
C
ARG
19
n
19
ARG
19
C
THR
20
n
20
THR
20
C
GLU
21
n
21
GLU
21
C
THR
22
n
22
THR
22
C
ASP
23
n
23
ASP
23
C
LEU
24
n
24
LEU
24
C
SER
25
n
25
SER
25
C
PHE
26
n
26
PHE
26
C
LYS
27
n
27
LYS
27
C
LYS
28
n
28
LYS
28
C
GLY
29
n
29
GLY
29
C
GLU
30
n
30
GLU
30
C
ARG
31
n
31
ARG
31
C
LEU
32
n
32
LEU
32
C
GLN
33
n
33
GLN
33
C
ILE
34
n
34
ILE
34
C
VAL
35
n
35
VAL
35
C
ASN
36
n
36
ASN
36
C
ASN
37
n
37
ASN
37
C
THR
38
n
38
THR
38
C
GLU
39
n
39
GLU
39
C
GLY
40
n
40
GLY
40
C
ASP
41
n
41
ASP
41
C
TRP
42
n
42
TRP
42
C
TRP
43
n
43
TRP
43
C
LEU
44
n
44
LEU
44
C
ALA
45
n
45
ALA
45
C
HIS
46
n
46
HIS
46
C
SER
47
n
47
SER
47
C
LEU
48
n
48
LEU
48
C
THR
49
n
49
THR
49
C
THR
50
n
50
THR
50
C
GLY
51
n
51
GLY
51
C
GLN
52
n
52
GLN
52
C
THR
53
n
53
THR
53
C
GLY
54
n
54
GLY
54
C
TYR
55
n
55
TYR
55
C
ILE
56
n
56
ILE
56
C
PRO
57
n
57
PRO
57
C
SER
58
n
58
SER
58
C
ASN
59
n
59
ASN
59
C
TYR
60
n
60
TYR
60
C
VAL
61
n
61
VAL
61
C
ALA
62
n
62
ALA
62
C
PRO
63
n
63
PRO
63
C
SER
64
n
64
SER
64
C
ARG
71
n
1
ARG
71
R
ALA
72
n
2
ALA
72
R
LEU
73
n
3
LEU
73
R
PRO
74
n
4
PRO
74
R
PRO
75
n
5
PRO
75
R
LEU
76
n
6
LEU
76
R
PRO
77
n
7
PRO
77
R
ARG
78
n
8
ARG
78
R
TYR
79
n
9
TYR
79
R
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
C
O
VAL
11
A
O
VAL
11
C
N
ALA
62
A
N
ALA
62
C
O
TRP
43
A
O
TRP
43
C
N
ILE
56
A
N
ILE
56
1
C
GLY
1
A
GLY
1
1
Y
1
C
ALA
2
A
ALA
2
1
Y
1
C
LEU
3
A
LEU
3
1
Y
1
C
ALA
4
A
ALA
4
1
Y
1
C
GLY
5
A
GLY
5
1
Y
1
C
GLY
6
A
GLY
6
1
Y
1
C
VAL
7
A
VAL
7
1
Y
1
C
THR
8
A
THR
8
1
Y
2
C
GLY
1
A
GLY
1
1
Y
2
C
ALA
2
A
ALA
2
1
Y
2
C
LEU
3
A
LEU
3
1
Y
2
C
ALA
4
A
ALA
4
1
Y
2
C
GLY
5
A
GLY
5
1
Y
2
C
GLY
6
A
GLY
6
1
Y
2
C
VAL
7
A
VAL
7
1
Y
2
C
THR
8
A
THR
8
1
Y
3
C
GLY
1
A
GLY
1
1
Y
3
C
ALA
2
A
ALA
2
1
Y
3
C
LEU
3
A
LEU
3
1
Y
3
C
ALA
4
A
ALA
4
1
Y
3
C
GLY
5
A
GLY
5
1
Y
3
C
GLY
6
A
GLY
6
1
Y
3
C
VAL
7
A
VAL
7
1
Y
3
C
THR
8
A
THR
8
1
Y
4
C
GLY
1
A
GLY
1
1
Y
4
C
ALA
2
A
ALA
2
1
Y
4
C
LEU
3
A
LEU
3
1
Y
4
C
ALA
4
A
ALA
4
1
Y
4
C
GLY
5
A
GLY
5
1
Y
4
C
GLY
6
A
GLY
6
1
Y
4
C
VAL
7
A
VAL
7
1
Y
4
C
THR
8
A
THR
8
1
Y
5
C
GLY
1
A
GLY
1
1
Y
5
C
ALA
2
A
ALA
2
1
Y
5
C
LEU
3
A
LEU
3
1
Y
5
C
ALA
4
A
ALA
4
1
Y
5
C
GLY
5
A
GLY
5
1
Y
5
C
GLY
6
A
GLY
6
1
Y
5
C
VAL
7
A
VAL
7
1
Y
5
C
THR
8
A
THR
8
1
Y
6
C
GLY
1
A
GLY
1
1
Y
6
C
ALA
2
A
ALA
2
1
Y
6
C
LEU
3
A
LEU
3
1
Y
6
C
ALA
4
A
ALA
4
1
Y
6
C
GLY
5
A
GLY
5
1
Y
6
C
GLY
6
A
GLY
6
1
Y
6
C
VAL
7
A
VAL
7
1
Y
6
C
THR
8
A
THR
8
1
Y
7
C
GLY
1
A
GLY
1
1
Y
7
C
ALA
2
A
ALA
2
1
Y
7
C
LEU
3
A
LEU
3
1
Y
7
C
ALA
4
A
ALA
4
1
Y
7
C
GLY
5
A
GLY
5
1
Y
7
C
GLY
6
A
GLY
6
1
Y
7
C
VAL
7
A
VAL
7
1
Y
7
C
THR
8
A
THR
8
1
Y
8
C
GLY
1
A
GLY
1
1
Y
8
C
ALA
2
A
ALA
2
1
Y
8
C
LEU
3
A
LEU
3
1
Y
8
C
ALA
4
A
ALA
4
1
Y
8
C
GLY
5
A
GLY
5
1
Y
8
C
GLY
6
A
GLY
6
1
Y
8
C
VAL
7
A
VAL
7
1
Y
8
C
THR
8
A
THR
8
1
Y
9
C
GLY
1
A
GLY
1
1
Y
9
C
ALA
2
A
ALA
2
1
Y
9
C
LEU
3
A
LEU
3
1
Y
9
C
ALA
4
A
ALA
4
1
Y
9
C
GLY
5
A
GLY
5
1
Y
9
C
GLY
6
A
GLY
6
1
Y
9
C
VAL
7
A
VAL
7
1
Y
9
C
THR
8
A
THR
8
1
Y
10
C
GLY
1
A
GLY
1
1
Y
10
C
ALA
2
A
ALA
2
1
Y
10
C
LEU
3
A
LEU
3
1
Y
10
C
ALA
4
A
ALA
4
1
Y
10
C
GLY
5
A
GLY
5
1
Y
10
C
GLY
6
A
GLY
6
1
Y
10
C
VAL
7
A
VAL
7
1
Y
10
C
THR
8
A
THR
8
1
Y
11
C
GLY
1
A
GLY
1
1
Y
11
C
ALA
2
A
ALA
2
1
Y
11
C
LEU
3
A
LEU
3
1
Y
11
C
ALA
4
A
ALA
4
1
Y
11
C
GLY
5
A
GLY
5
1
Y
11
C
GLY
6
A
GLY
6
1
Y
11
C
VAL
7
A
VAL
7
1
Y
11
C
THR
8
A
THR
8
1
Y
12
C
GLY
1
A
GLY
1
1
Y
12
C
ALA
2
A
ALA
2
1
Y
12
C
LEU
3
A
LEU
3
1
Y
12
C
ALA
4
A
ALA
4
1
Y
12
C
GLY
5
A
GLY
5
1
Y
12
C
GLY
6
A
GLY
6
1
Y
12
C
VAL
7
A
VAL
7
1
Y
12
C
THR
8
A
THR
8
1
Y
13
C
GLY
1
A
GLY
1
1
Y
13
C
ALA
2
A
ALA
2
1
Y
13
C
LEU
3
A
LEU
3
1
Y
13
C
ALA
4
A
ALA
4
1
Y
13
C
GLY
5
A
GLY
5
1
Y
13
C
GLY
6
A
GLY
6
1
Y
13
C
VAL
7
A
VAL
7
1
Y
13
C
THR
8
A
THR
8
1
Y
14
C
GLY
1
A
GLY
1
1
Y
14
C
ALA
2
A
ALA
2
1
Y
14
C
LEU
3
A
LEU
3
1
Y
14
C
ALA
4
A
ALA
4
1
Y
14
C
GLY
5
A
GLY
5
1
Y
14
C
GLY
6
A
GLY
6
1
Y
14
C
VAL
7
A
VAL
7
1
Y
14
C
THR
8
A
THR
8
1
Y
15
C
GLY
1
A
GLY
1
1
Y
15
C
ALA
2
A
ALA
2
1
Y
15
C
LEU
3
A
LEU
3
1
Y
15
C
ALA
4
A
ALA
4
1
Y
15
C
GLY
5
A
GLY
5
1
Y
15
C
GLY
6
A
GLY
6
1
Y
15
C
VAL
7
A
VAL
7
1
Y
15
C
THR
8
A
THR
8
1
Y
16
C
GLY
1
A
GLY
1
1
Y
16
C
ALA
2
A
ALA
2
1
Y
16
C
LEU
3
A
LEU
3
1
Y
16
C
ALA
4
A
ALA
4
1
Y
16
C
GLY
5
A
GLY
5
1
Y
16
C
GLY
6
A
GLY
6
1
Y
16
C
VAL
7
A
VAL
7
1
Y
16
C
THR
8
A
THR
8
1
Y
1
-6.47
1.00
110.10
103.63
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
42
42
42
N
1
6.13
0.90
109.00
115.13
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
42
42
42
N
1
8.68
1.10
130.40
139.08
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
42
42
42
N
1
-6.40
1.00
107.30
100.90
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
42
42
42
N
1
-6.54
1.00
110.10
103.56
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
43
43
43
N
1
6.10
0.90
109.00
115.10
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
43
43
43
N
1
8.84
1.10
130.40
139.24
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
43
43
43
N
1
-6.48
1.00
107.30
100.82
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
43
43
43
N
2
-6.51
1.00
110.10
103.59
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
42
42
42
N
2
6.08
0.90
109.00
115.08
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
42
42
42
N
2
8.72
1.10
130.40
139.12
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
42
42
42
N
2
-6.43
1.00
107.30
100.87
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
42
42
42
N
2
-6.50
1.00
110.10
103.60
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
43
43
43
N
2
6.10
0.90
109.00
115.10
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
43
43
43
N
2
8.57
1.10
130.40
138.97
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
43
43
43
N
2
-6.33
1.00
107.30
100.97
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
43
43
43
N
3
-6.46
1.00
110.10
103.64
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
42
42
42
N
3
6.10
0.90
109.00
115.10
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
42
42
42
N
3
8.43
1.10
130.40
138.83
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
42
42
42
N
3
-6.27
1.00
107.30
101.03
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
42
42
42
N
3
-6.57
1.00
110.10
103.53
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
43
43
43
N
3
6.10
0.90
109.00
115.10
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
43
43
43
N
3
8.70
1.10
130.40
139.10
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
43
43
43
N
3
-6.30
1.00
107.30
101.00
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
43
43
43
N
4
-6.52
1.00
110.10
103.58
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
42
42
42
N
4
6.17
0.90
109.00
115.17
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
42
42
42
N
4
8.85
1.10
130.40
139.25
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
42
42
42
N
4
-6.44
1.00
107.30
100.86
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
42
42
42
N
4
-6.52
1.00
110.10
103.58
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
43
43
43
N
4
6.07
0.90
109.00
115.07
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
43
43
43
N
4
8.83
1.10
130.40
139.23
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
43
43
43
N
4
-6.49
1.00
107.30
100.81
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
43
43
43
N
5
-6.55
1.00
110.10
103.55
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
42
42
42
N
5
6.11
0.90
109.00
115.11
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
42
42
42
N
5
8.68
1.10
130.40
139.08
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
42
42
42
N
5
-6.35
1.00
107.30
100.95
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
42
42
42
N
5
-6.57
1.00
110.10
103.53
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
43
43
43
N
5
6.17
0.90
109.00
115.17
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
43
43
43
N
5
8.70
1.10
130.40
139.10
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
43
43
43
N
5
-6.42
1.00
107.30
100.88
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
43
43
43
N
6
-6.55
1.00
110.10
103.55
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
42
42
42
N
6
6.10
0.90
109.00
115.10
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
42
42
42
N
6
8.73
1.10
130.40
139.13
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
42
42
42
N
6
-6.39
1.00
107.30
100.91
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
42
42
42
N
6
-6.38
1.00
110.10
103.72
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
43
43
43
N
6
6.09
0.90
109.00
115.09
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
43
43
43
N
6
8.80
1.10
130.40
139.20
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
43
43
43
N
6
-6.46
1.00
107.30
100.84
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
43
43
43
N
7
-6.50
1.00
110.10
103.60
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
42
42
42
N
7
6.12
0.90
109.00
115.12
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
42
42
42
N
7
8.68
1.10
130.40
139.08
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
42
42
42
N
7
-6.43
1.00
107.30
100.87
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
42
42
42
N
7
-6.61
1.00
110.10
103.49
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
43
43
43
N
7
6.23
0.90
109.00
115.23
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
43
43
43
N
7
8.73
1.10
130.40
139.13
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
43
43
43
N
7
-6.39
1.00
107.30
100.91
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
43
43
43
N
8
-6.54
1.00
110.10
103.56
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
42
42
42
N
8
6.13
0.90
109.00
115.13
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
42
42
42
N
8
8.77
1.10
130.40
139.17
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
42
42
42
N
8
-6.37
1.00
107.30
100.93
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
42
42
42
N
8
-6.44
1.00
110.10
103.66
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
43
43
43
N
8
6.06
0.90
109.00
115.06
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
43
43
43
N
8
8.49
1.10
130.40
138.89
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
43
43
43
N
8
-6.31
1.00
107.30
100.99
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
43
43
43
N
9
-6.53
1.00
110.10
103.57
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
42
42
42
N
9
6.13
0.90
109.00
115.13
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
42
42
42
N
9
8.74
1.10
130.40
139.14
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
42
42
42
N
9
-6.46
1.00
107.30
100.84
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
42
42
42
N
9
-6.50
1.00
110.10
103.60
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
43
43
43
N
9
6.11
0.90
109.00
115.11
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
43
43
43
N
9
8.85
1.10
130.40
139.25
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
43
43
43
N
9
-6.50
1.00
107.30
100.80
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
43
43
43
N
10
-6.54
1.00
110.10
103.56
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
42
42
42
N
10
6.08
0.90
109.00
115.08
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
42
42
42
N
10
8.73
1.10
130.40
139.13
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
42
42
42
N
10
-6.32
1.00
107.30
100.98
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
42
42
42
N
10
-6.46
1.00
110.10
103.64
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
43
43
43
N
10
6.07
0.90
109.00
115.07
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
43
43
43
N
10
8.65
1.10
130.40
139.05
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
43
43
43
N
10
-6.35
1.00
107.30
100.95
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
43
43
43
N
11
-6.45
1.00
110.10
103.65
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
42
42
42
N
11
6.05
0.90
109.00
115.05
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
42
42
42
N
11
8.73
1.10
130.40
139.13
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
42
42
42
N
11
-6.43
1.00
107.30
100.87
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
42
42
42
N
11
-6.50
1.00
110.10
103.60
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
43
43
43
N
11
6.16
0.90
109.00
115.16
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
43
43
43
N
11
8.72
1.10
130.40
139.12
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
43
43
43
N
11
-6.41
1.00
107.30
100.89
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
43
43
43
N
12
-6.60
1.00
110.10
103.50
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
42
42
42
N
12
6.17
0.90
109.00
115.17
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
42
42
42
N
12
8.70
1.10
130.40
139.10
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
42
42
42
N
12
-6.35
1.00
107.30
100.95
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
42
42
42
N
12
-6.51
1.00
110.10
103.59
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
43
43
43
N
12
6.07
0.90
109.00
115.07
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
43
43
43
N
12
8.80
1.10
130.40
139.20
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
43
43
43
N
12
-6.39
1.00
107.30
100.91
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
43
43
43
N
13
-6.48
1.00
110.10
103.62
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
42
42
42
N
13
6.04
0.90
109.00
115.04
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
42
42
42
N
13
8.64
1.10
130.40
139.04
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
42
42
42
N
13
-6.32
1.00
107.30
100.98
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
42
42
42
N
13
-6.52
1.00
110.10
103.58
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
43
43
43
N
13
6.05
0.90
109.00
115.05
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
43
43
43
N
13
8.70
1.10
130.40
139.10
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
43
43
43
N
13
-6.39
1.00
107.30
100.91
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
43
43
43
N
14
-6.52
1.00
110.10
103.58
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
42
42
42
N
14
6.13
0.90
109.00
115.13
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
42
42
42
N
14
8.62
1.10
130.40
139.02
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
42
42
42
N
14
-6.34
1.00
107.30
100.96
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
42
42
42
N
14
-6.60
1.00
110.10
103.50
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
43
43
43
N
14
6.15
0.90
109.00
115.15
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
43
43
43
N
14
8.73
1.10
130.40
139.13
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
43
43
43
N
14
-6.34
1.00
107.30
100.96
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
43
43
43
N
15
-6.51
1.00
110.10
103.59
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
42
42
42
N
15
6.12
0.90
109.00
115.12
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
42
42
42
N
15
8.69
1.10
130.40
139.09
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
42
42
42
N
15
-6.37
1.00
107.30
100.93
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
42
42
42
N
15
-6.52
1.00
110.10
103.58
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
43
43
43
N
15
6.14
0.90
109.00
115.14
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
43
43
43
N
15
8.75
1.10
130.40
139.15
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
43
43
43
N
15
-6.39
1.00
107.30
100.91
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
43
43
43
N
16
-6.54
1.00
110.10
103.56
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
42
42
42
N
16
6.13
0.90
109.00
115.13
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
42
42
42
N
16
8.67
1.10
130.40
139.07
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
42
42
42
N
16
-6.38
1.00
107.30
100.92
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
42
42
42
N
16
-6.48
1.00
110.10
103.62
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
43
43
43
N
16
6.09
0.90
109.00
115.09
C
C
C
CD1
NE1
CE2
TRP
TRP
TRP
43
43
43
N
16
8.50
1.10
130.40
138.90
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
43
43
43
N
16
-6.24
1.00
107.30
101.06
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
43
43
43
N
1
C
C
CG
CD2
TRP
TRP
43
43
-0.102
0.017
1.432
1.330
N
1
C
C
CG
ND1
HIS
HIS
46
46
-0.101
0.015
1.369
1.268
N
2
C
C
CG
CD2
TRP
TRP
42
42
-0.102
0.017
1.432
1.330
N
2
C
C
CG
ND1
HIS
HIS
46
46
-0.101
0.015
1.369
1.268
N
3
C
C
CG
ND1
HIS
HIS
46
46
-0.102
0.015
1.369
1.267
N
4
C
C
CG
CD2
TRP
TRP
42
42
-0.103
0.017
1.432
1.329
N
4
C
C
CG
CD2
TRP
TRP
43
43
-0.103
0.017
1.432
1.329
N
4
C
C
CG
ND1
HIS
HIS
46
46
-0.101
0.015
1.369
1.268
N
5
C
C
CG
ND1
HIS
HIS
46
46
-0.102
0.015
1.369
1.267
N
6
C
C
CG
CD2
TRP
TRP
42
42
-0.103
0.017
1.432
1.329
N
6
C
C
CG
ND1
HIS
HIS
46
46
-0.101
0.015
1.369
1.268
N
7
C
C
CG
ND1
HIS
HIS
46
46
-0.102
0.015
1.369
1.267
N
8
C
C
CG
ND1
HIS
HIS
46
46
-0.105
0.015
1.369
1.264
N
9
C
C
CG
CD2
TRP
TRP
43
43
-0.103
0.017
1.432
1.329
N
9
C
C
CG
ND1
HIS
HIS
46
46
-0.101
0.015
1.369
1.268
N
10
C
C
CG
ND1
HIS
HIS
46
46
-0.101
0.015
1.369
1.268
N
11
C
C
CG
ND1
HIS
HIS
46
46
-0.102
0.015
1.369
1.267
N
12
C
C
CG
ND1
HIS
HIS
46
46
-0.102
0.015
1.369
1.267
N
13
C
C
CG
CD2
TRP
TRP
43
43
-0.102
0.017
1.432
1.330
N
13
C
C
CG
ND1
HIS
HIS
46
46
-0.102
0.015
1.369
1.267
N
14
C
C
CG
CD2
TRP
TRP
43
43
-0.102
0.017
1.432
1.330
N
14
C
C
CG
ND1
HIS
HIS
46
46
-0.101
0.015
1.369
1.268
N
15
C
C
CG
ND1
HIS
HIS
46
46
-0.101
0.015
1.369
1.268
N
16
C
C
CG
ND1
HIS
HIS
46
46
-0.106
0.015
1.369
1.263
N
1
C
SER
18
-61.24
-171.48
1
C
THR
22
-92.02
-75.74
1
C
GLU
39
-144.61
-84.91
1
C
THR
49
-75.84
-70.83
1
R
PRO
77
-57.80
173.64
2
C
GLU
17
-108.97
66.54
2
C
THR
22
-63.00
-72.13
2
C
VAL
35
-103.77
-87.42
2
C
ASN
37
74.22
73.67
2
C
THR
49
-101.24
-78.54
2
C
TYR
55
-50.11
93.73
2
C
PRO
63
-60.67
84.85
2
R
ALA
72
-42.59
107.46
2
R
ARG
78
-43.95
167.11
3
C
GLU
17
-104.37
71.81
3
C
THR
22
-52.18
-72.11
3
C
VAL
35
-107.02
-66.67
3
C
ASN
37
63.89
109.25
3
C
ASP
41
84.23
-30.94
3
C
THR
49
-93.59
-72.61
3
C
PRO
63
-62.07
87.20
3
R
ALA
72
66.01
85.24
3
R
ARG
78
-173.22
-36.03
4
C
GLU
17
-108.21
61.48
4
C
SER
18
-43.84
162.53
4
C
THR
22
-102.06
-66.79
4
C
VAL
35
-96.58
-60.19
4
C
ASN
36
-167.58
-147.79
4
C
ASN
37
73.95
113.07
4
R
ALA
72
62.83
151.07
4
R
PRO
75
-59.35
172.13
4
R
LEU
76
-42.90
160.54
5
C
ALA
12
-68.66
92.87
5
C
GLU
17
-113.07
61.62
5
C
SER
18
-49.72
-179.81
5
C
ASN
37
-144.32
53.69
5
C
THR
49
-93.76
-78.09
5
R
ARG
78
61.20
75.13
6
C
ALA
12
-65.19
94.40
6
C
SER
18
-49.82
177.59
6
C
ARG
19
-133.16
-41.16
6
C
VAL
35
-103.75
-70.17
6
C
ASN
36
179.02
134.65
6
C
ASN
37
165.52
57.92
6
C
THR
38
-42.68
-70.26
6
C
ASP
41
83.84
-44.53
6
C
TYR
55
-61.77
91.05
6
C
ALA
62
169.20
144.20
6
C
PRO
63
-63.06
88.02
6
R
ARG
78
38.38
94.22
7
C
GLU
21
-90.46
58.64
7
C
THR
22
-157.09
-97.27
7
C
ASN
36
-143.21
-57.40
7
C
ASN
37
53.32
112.40
7
C
THR
38
177.37
-28.42
7
C
GLU
39
-51.82
-91.60
7
C
ASP
41
-158.69
31.48
7
C
TRP
42
-160.27
116.46
7
C
THR
49
-48.28
-91.35
7
C
TYR
55
-60.23
96.75
7
R
LEU
76
-43.68
150.11
8
C
SER
18
-43.42
166.57
8
C
SER
25
-25.04
143.02
8
C
THR
38
45.78
24.23
8
C
HIS
46
-124.31
-152.74
8
C
THR
49
-121.55
-156.87
8
C
TYR
55
-68.51
88.88
8
C
PRO
57
-65.06
-173.71
8
R
ALA
72
62.17
127.04
8
R
ARG
78
164.66
-73.45
9
C
GLU
17
-113.33
66.01
9
C
ASP
23
60.42
127.31
9
C
ASN
37
-143.67
43.18
9
C
GLU
39
-109.74
-90.83
9
C
TRP
42
-160.21
109.31
9
C
THR
49
-75.20
-73.93
9
C
ALA
62
-173.89
147.42
9
R
LEU
73
-43.60
159.76
9
R
PRO
75
-60.11
91.53
9
R
PRO
77
-58.43
105.53
10
C
THR
22
-88.84
-83.35
10
C
VAL
35
-109.87
-75.22
10
C
ASN
37
57.55
111.40
10
C
THR
49
-85.48
-79.99
10
C
TYR
55
-66.39
88.91
10
C
ALA
62
-170.99
140.36
10
C
PRO
63
-63.49
88.76
10
R
ALA
72
57.34
100.33
10
R
LEU
76
-42.59
161.86
11
C
THR
22
-145.74
-74.73
11
C
VAL
35
-96.62
-73.77
11
C
ASN
37
55.81
105.63
11
C
ASP
41
-158.02
28.75
11
C
THR
49
-121.85
-57.21
11
C
PRO
63
-60.66
99.94
11
R
PRO
75
-61.19
99.96
12
C
ARG
19
-98.68
37.41
12
C
THR
22
-84.49
-75.09
12
C
ASN
37
-173.51
108.55
12
C
THR
38
-143.49
-59.75
12
C
GLU
39
-159.35
-38.69
12
C
VAL
61
-127.44
-165.39
12
C
ALA
62
173.24
147.59
12
R
ALA
72
76.76
86.46
12
R
ARG
78
-55.20
97.02
13
C
ALA
12
-47.25
173.40
13
C
LEU
13
-147.86
-56.62
13
C
GLU
17
-111.19
76.10
13
C
THR
22
-142.77
-71.31
13
C
GLN
33
-60.06
93.13
13
C
ASN
37
-176.64
43.04
13
C
ASP
41
-95.77
32.68
13
C
TRP
42
-160.22
101.32
13
C
SER
47
-85.25
42.52
13
C
LEU
48
15.73
54.77
13
C
THR
49
-115.64
-99.77
13
C
TYR
55
-60.61
97.51
13
R
ALA
72
72.28
126.02
13
R
PRO
77
-60.80
-171.80
14
C
PHE
10
-79.90
-169.26
14
C
LEU
13
-142.71
-51.54
14
C
SER
18
-51.40
-176.06
14
C
THR
38
-89.29
30.14
14
C
GLU
39
-97.75
-62.16
14
C
THR
49
-80.07
-82.65
14
C
VAL
61
-127.63
-169.71
14
C
ALA
62
178.99
150.15
14
C
PRO
63
-64.28
82.86
14
R
LEU
73
-48.49
153.26
14
R
PRO
77
-60.40
-174.03
14
R
ARG
78
-44.09
-91.74
15
C
GLU
17
-100.34
74.23
15
C
SER
18
-56.32
178.61
15
C
ARG
19
-141.23
44.26
15
C
THR
22
-62.90
-92.42
15
C
ILE
34
-44.00
162.90
15
C
ASN
36
-170.85
-162.97
15
C
ASN
37
66.27
110.08
15
C
GLU
39
-82.90
-153.23
15
C
ASP
41
-146.73
34.13
15
C
THR
49
-113.54
-93.45
15
C
TYR
55
-52.46
174.53
15
R
PRO
77
-61.30
-170.05
15
R
ARG
78
-74.84
-149.55
16
C
GLU
17
-90.90
53.00
16
C
GLU
21
-90.21
42.14
16
C
THR
22
-140.42
-74.05
16
C
VAL
35
-123.23
-83.17
16
C
ASN
37
-156.90
86.96
16
C
THR
38
-139.43
-98.10
16
C
HIS
46
-101.45
-164.95
16
C
SER
47
-165.62
49.98
16
C
LEU
48
176.05
-86.47
16
C
THR
49
-144.16
-153.73
16
C
THR
50
-90.69
44.28
16
C
GLN
52
-104.28
-151.83
16
C
VAL
61
-103.43
-166.09
16
C
ALA
62
176.93
149.28
16
R
ALA
72
59.82
116.97
16
R
PRO
77
-63.81
82.39
16
R
ARG
78
173.36
-71.32
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
TWO BINDING ORIENTATIONS FOR PEPTIDES TO SRC SH3 DOMAIN: DEVELOPMENT OF A GENERAL MODEL FOR SH3-LIGAND INTERACTIONS
1
N
N
2
N
N
COMPLEX (SIGNAL TRANSDUCTION/PEPTIDE)
COMPLEX (SIGNAL TRANSDUCTION-PEPTIDE), COMPLEX (SIGNAL TRANSDUCTION-PEPTIDE) complex
SRC_CHICK
UNP
1
1
P00523
GSSKSKPKDPSQRRRSLEPPDSTHHGGFPASQTPNKTAAPDTHRTPSRSFGTVATEPKLFGGFNTSDTVTSPQRAGALAG
GVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERL
LLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFSSLQQLVAYYSKHADGLCHRL
TNVCPTSKPQTQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK
LVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCK
VADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRM
PCPPECPESLHDLMCQCWRKDPEERPTFEYLQAFLEDYFTSTEPQYQPGENL
1RLP
PDB
2
1RLP
76
139
1RLP
1
64
P00523
C
1
1
64
71
79
1RLP
71
79
1RLP
R
2
1
9
2
2
anti-parallel
anti-parallel
C
PHE
10
A
PHE
10
C
ALA
12
A
ALA
12
C
VAL
61
A
VAL
61
C
PRO
63
A
PRO
63
C
TRP
43
A
TRP
43
C
SER
47
A
SER
47
C
GLN
52
A
GLN
52
C
ILE
56
A
ILE
56
1
P 1