0.015358
0.008867
0.000000
0.000000
0.017734
0.000000
0.000000
0.000000
0.015321
0.00000
0.00000
0.00000
CIS PROLINE - PRO E 93
CIS PROLINE - PRO E 114
Fedorov, A.A.
Almo, S.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
65.114
65.114
65.272
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
CYTIDINE-5'-MONOPHOSPHATE
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C H2 O2
46.025
FORMIC ACID
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Structure of the Crystalline Complex of Bovine Pancreatic Ribonuclease A and Cytidylic Acid
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
290
1
AREA DETECTOR
1993
SIEMENS-NICOLET X100
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
13708.326
RIBONUCLEASE A
3.1.27.5
1
nat
polymer
323.197
CYTIDINE-5'-MONOPHOSPHATE
1
syn
non-polymer
46.025
FORMIC ACID
1
syn
non-polymer
18.015
water
103
nat
water
RNASE A/5'-CMP
no
no
KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMS
ITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV
KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMS
ITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV
E
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
cattle
Bos
sample
9913
PANCREAS
Bos taurus
2.91
57.78
5.5
pH 5.5
software
software
repository
Initial release
Version format compliance
Version format compliance
Data collection
Refinement description
Data collection
Refinement description
1
0
1996-04-03
1
1
2008-03-24
1
2
2011-07-13
1
3
2019-07-17
1
4
2019-08-14
_software.classification
_software.name
_software.classification
_software.name
Y
BNL
1995-11-08
REL
C5P
CYTIDINE-5'-MONOPHOSPHATE
FMT
FORMIC ACID
HOH
water
C
200
2
C5P
C5P
200
E
FMT
131
3
FMT
FMT
131
E
HOH
201
4
HOH
HOH
201
E
HOH
202
4
HOH
HOH
202
E
HOH
203
4
HOH
HOH
203
E
HOH
204
4
HOH
HOH
204
E
HOH
205
4
HOH
HOH
205
E
HOH
206
4
HOH
HOH
206
E
HOH
207
4
HOH
HOH
207
E
HOH
208
4
HOH
HOH
208
E
HOH
209
4
HOH
HOH
209
E
HOH
210
4
HOH
HOH
210
E
HOH
211
4
HOH
HOH
211
E
HOH
212
4
HOH
HOH
212
E
HOH
213
4
HOH
HOH
213
E
HOH
214
4
HOH
HOH
214
E
HOH
215
4
HOH
HOH
215
E
HOH
216
4
HOH
HOH
216
E
HOH
217
4
HOH
HOH
217
E
HOH
218
4
HOH
HOH
218
E
HOH
219
4
HOH
HOH
219
E
HOH
220
4
HOH
HOH
220
E
HOH
221
4
HOH
HOH
221
E
HOH
222
4
HOH
HOH
222
E
HOH
223
4
HOH
HOH
223
E
HOH
224
4
HOH
HOH
224
E
HOH
225
4
HOH
HOH
225
E
HOH
226
4
HOH
HOH
226
E
HOH
227
4
HOH
HOH
227
E
HOH
228
4
HOH
HOH
228
E
HOH
229
4
HOH
HOH
229
E
HOH
230
4
HOH
HOH
230
E
HOH
231
4
HOH
HOH
231
E
HOH
232
4
HOH
HOH
232
E
HOH
233
4
HOH
HOH
233
E
HOH
234
4
HOH
HOH
234
E
HOH
235
4
HOH
HOH
235
E
HOH
236
4
HOH
HOH
236
E
HOH
237
4
HOH
HOH
237
E
HOH
238
4
HOH
HOH
238
E
HOH
239
4
HOH
HOH
239
E
HOH
240
4
HOH
HOH
240
E
HOH
241
4
HOH
HOH
241
E
HOH
242
4
HOH
HOH
242
E
HOH
243
4
HOH
HOH
243
E
HOH
244
4
HOH
HOH
244
E
HOH
245
4
HOH
HOH
245
E
HOH
246
4
HOH
HOH
246
E
HOH
247
4
HOH
HOH
247
E
HOH
248
4
HOH
HOH
248
E
HOH
249
4
HOH
HOH
249
E
HOH
250
4
HOH
HOH
250
E
HOH
251
4
HOH
HOH
251
E
HOH
252
4
HOH
HOH
252
E
HOH
253
4
HOH
HOH
253
E
HOH
254
4
HOH
HOH
254
E
HOH
255
4
HOH
HOH
255
E
HOH
256
4
HOH
HOH
256
E
HOH
257
4
HOH
HOH
257
E
HOH
258
4
HOH
HOH
258
E
HOH
259
4
HOH
HOH
259
E
HOH
260
4
HOH
HOH
260
E
HOH
261
4
HOH
HOH
261
E
HOH
262
4
HOH
HOH
262
E
HOH
263
4
HOH
HOH
263
E
HOH
264
4
HOH
HOH
264
E
HOH
265
4
HOH
HOH
265
E
HOH
266
4
HOH
HOH
266
E
HOH
267
4
HOH
HOH
267
E
HOH
268
4
HOH
HOH
268
E
HOH
269
4
HOH
HOH
269
E
HOH
270
4
HOH
HOH
270
E
HOH
271
4
HOH
HOH
271
E
HOH
272
4
HOH
HOH
272
E
HOH
273
4
HOH
HOH
273
E
HOH
274
4
HOH
HOH
274
E
HOH
275
4
HOH
HOH
275
E
HOH
276
4
HOH
HOH
276
E
HOH
277
4
HOH
HOH
277
E
HOH
278
4
HOH
HOH
278
E
HOH
279
4
HOH
HOH
279
E
HOH
280
4
HOH
HOH
280
E
HOH
281
4
HOH
HOH
281
E
HOH
282
4
HOH
HOH
282
E
HOH
283
4
HOH
HOH
283
E
HOH
284
4
HOH
HOH
284
E
HOH
285
4
HOH
HOH
285
E
HOH
286
4
HOH
HOH
286
E
HOH
287
4
HOH
HOH
287
E
HOH
288
4
HOH
HOH
288
E
HOH
289
4
HOH
HOH
289
E
HOH
290
4
HOH
HOH
290
E
HOH
291
4
HOH
HOH
291
E
HOH
292
4
HOH
HOH
292
E
HOH
293
4
HOH
HOH
293
E
HOH
294
4
HOH
HOH
294
E
HOH
295
4
HOH
HOH
295
E
HOH
296
4
HOH
HOH
296
E
HOH
297
4
HOH
HOH
297
E
HOH
298
4
HOH
HOH
298
E
HOH
299
4
HOH
HOH
299
E
HOH
300
4
HOH
HOH
300
E
HOH
301
4
HOH
HOH
301
E
HOH
302
4
HOH
HOH
302
E
HOH
303
4
HOH
HOH
303
E
LYS
1
n
1
LYS
1
E
GLU
2
n
2
GLU
2
E
THR
3
n
3
THR
3
E
ALA
4
n
4
ALA
4
E
ALA
5
n
5
ALA
5
E
ALA
6
n
6
ALA
6
E
LYS
7
n
7
LYS
7
E
PHE
8
n
8
PHE
8
E
GLU
9
n
9
GLU
9
E
ARG
10
n
10
ARG
10
E
GLN
11
n
11
GLN
11
E
HIS
12
n
12
HIS
12
E
MET
13
n
13
MET
13
E
ASP
14
n
14
ASP
14
E
SER
15
n
15
SER
15
E
SER
16
n
16
SER
16
E
THR
17
n
17
THR
17
E
SER
18
n
18
SER
18
E
ALA
19
n
19
ALA
19
E
ALA
20
n
20
ALA
20
E
SER
21
n
21
SER
21
E
SER
22
n
22
SER
22
E
SER
23
n
23
SER
23
E
ASN
24
n
24
ASN
24
E
TYR
25
n
25
TYR
25
E
CYS
26
n
26
CYS
26
E
ASN
27
n
27
ASN
27
E
GLN
28
n
28
GLN
28
E
MET
29
n
29
MET
29
E
MET
30
n
30
MET
30
E
LYS
31
n
31
LYS
31
E
SER
32
n
32
SER
32
E
ARG
33
n
33
ARG
33
E
ASN
34
n
34
ASN
34
E
LEU
35
n
35
LEU
35
E
THR
36
n
36
THR
36
E
LYS
37
n
37
LYS
37
E
ASP
38
n
38
ASP
38
E
ARG
39
n
39
ARG
39
E
CYS
40
n
40
CYS
40
E
LYS
41
n
41
LYS
41
E
PRO
42
n
42
PRO
42
E
VAL
43
n
43
VAL
43
E
ASN
44
n
44
ASN
44
E
THR
45
n
45
THR
45
E
PHE
46
n
46
PHE
46
E
VAL
47
n
47
VAL
47
E
HIS
48
n
48
HIS
48
E
GLU
49
n
49
GLU
49
E
SER
50
n
50
SER
50
E
LEU
51
n
51
LEU
51
E
ALA
52
n
52
ALA
52
E
ASP
53
n
53
ASP
53
E
VAL
54
n
54
VAL
54
E
GLN
55
n
55
GLN
55
E
ALA
56
n
56
ALA
56
E
VAL
57
n
57
VAL
57
E
CYS
58
n
58
CYS
58
E
SER
59
n
59
SER
59
E
GLN
60
n
60
GLN
60
E
LYS
61
n
61
LYS
61
E
ASN
62
n
62
ASN
62
E
VAL
63
n
63
VAL
63
E
ALA
64
n
64
ALA
64
E
CYS
65
n
65
CYS
65
E
LYS
66
n
66
LYS
66
E
ASN
67
n
67
ASN
67
E
GLY
68
n
68
GLY
68
E
GLN
69
n
69
GLN
69
E
THR
70
n
70
THR
70
E
ASN
71
n
71
ASN
71
E
CYS
72
n
72
CYS
72
E
TYR
73
n
73
TYR
73
E
GLN
74
n
74
GLN
74
E
SER
75
n
75
SER
75
E
TYR
76
n
76
TYR
76
E
SER
77
n
77
SER
77
E
THR
78
n
78
THR
78
E
MET
79
n
79
MET
79
E
SER
80
n
80
SER
80
E
ILE
81
n
81
ILE
81
E
THR
82
n
82
THR
82
E
ASP
83
n
83
ASP
83
E
CYS
84
n
84
CYS
84
E
ARG
85
n
85
ARG
85
E
GLU
86
n
86
GLU
86
E
THR
87
n
87
THR
87
E
GLY
88
n
88
GLY
88
E
SER
89
n
89
SER
89
E
SER
90
n
90
SER
90
E
LYS
91
n
91
LYS
91
E
TYR
92
n
92
TYR
92
E
PRO
93
n
93
PRO
93
E
ASN
94
n
94
ASN
94
E
CYS
95
n
95
CYS
95
E
ALA
96
n
96
ALA
96
E
TYR
97
n
97
TYR
97
E
LYS
98
n
98
LYS
98
E
THR
99
n
99
THR
99
E
THR
100
n
100
THR
100
E
GLN
101
n
101
GLN
101
E
ALA
102
n
102
ALA
102
E
ASN
103
n
103
ASN
103
E
LYS
104
n
104
LYS
104
E
HIS
105
n
105
HIS
105
E
ILE
106
n
106
ILE
106
E
ILE
107
n
107
ILE
107
E
VAL
108
n
108
VAL
108
E
ALA
109
n
109
ALA
109
E
CYS
110
n
110
CYS
110
E
GLU
111
n
111
GLU
111
E
GLY
112
n
112
GLY
112
E
ASN
113
n
113
ASN
113
E
PRO
114
n
114
PRO
114
E
TYR
115
n
115
TYR
115
E
VAL
116
n
116
VAL
116
E
PRO
117
n
117
PRO
117
E
VAL
118
n
118
VAL
118
E
HIS
119
n
119
HIS
119
E
PHE
120
n
120
PHE
120
E
ASP
121
n
121
ASP
121
E
ALA
122
n
122
ALA
122
E
SER
123
n
123
SER
123
E
VAL
124
n
124
VAL
124
E
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
E
O
PRO
42
A
O
PRO
42
E
N
GLU
86
A
N
GLU
86
E
N
MET
79
A
N
MET
79
E
O
LYS
104
A
O
LYS
104
E
N
LYS
91
A
N
LYS
91
E
O
ASN
94
A
O
ASN
94
E
N
VAL
63
A
N
VAL
63
E
O
CYS
72
A
O
CYS
72
E
N
TYR
73
A
N
TYR
73
E
O
VAL
108
A
O
VAL
108
E
N
GLU
111
A
N
GLU
111
E
O
VAL
116
A
O
VAL
116
E
N
VAL
63
A
N
VAL
63
E
O
CYS
72
A
O
CYS
72
E
N
TYR
73
A
N
TYR
73
E
O
VAL
108
A
O
VAL
108
E
O
HIS
105
A
O
HIS
105
E
N
VAL
124
A
N
VAL
124
1
E
HIS
48
-104.33
59.67
1
E
GLN
60
-103.86
-140.33
0.17
0.17
1.80
8.
12259
1
2.
1.80
8.
106
1078
21
0
951
0.011
2.58
1.8
9.0
1RNN
13300
0.041
1
2.52
87.3
0.261
1.80
1.88
3.93
1.51
54.7
data scaling
XDS
model building
X-PLOR
refinement
PROFFT
refinement
X-PLOR
data reduction
XDS
phasing
X-PLOR
RIBONUCLEASE A, CYTIDINE-5'-MONOPHOSPHATE
RIBONUCLEASE A COMPLEX WITH CYTIDYLIC ACID (5'CMP) CRYSTALLIZED FROM 8M SODIUM FORMATE
1
N
N
2
N
N
3
N
N
4
N
N
E
THR
3
A
THR
3
HELX_P
E
MET
13
A
MET
13
1
H1
11
E
ASN
24
A
ASN
24
HELX_P
RESIDUE 34 IN 3/10 CONFIG
E
ASN
34
A
ASN
34
1
H2
11
E
SER
50
A
SER
50
HELX_P
RESIDUES 56-60 IN 3/10 CONFIG
E
GLN
60
A
GLN
60
1
H3
11
disulf
2.018
E
CYS
26
A
SG
CYS
26
1_555
E
CYS
84
A
SG
CYS
84
1_555
disulf
1.993
E
CYS
40
A
SG
CYS
40
1_555
E
CYS
95
A
SG
CYS
95
1_555
disulf
1.973
E
CYS
58
A
SG
CYS
58
1_555
E
CYS
110
A
SG
CYS
110
1_555
disulf
2.026
E
CYS
65
A
SG
CYS
65
1_555
E
CYS
72
A
SG
CYS
72
1_555
COMPLEX (HYDROLASE/CYTIDYLIC ACID)
COMPLEX (HYDROLASE-CYTIDYLIC ACID), COMPLEX (HYDROLASE-CYTIDYLIC ACID) complex
E
TYR
92
A
TYR
92
1
E
PRO
93
A
PRO
93
2.36
E
ASN
113
A
ASN
113
1
E
PRO
114
A
PRO
114
0.19
RNAS1_BOVIN
UNP
1
1
P61823
MALKSLVLLSLLVLVLLLVRVQPSLGKETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADV
QAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV
27
150
1RNN
1
124
P61823
E
1
1
124
3
3
4
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
E
LYS
41
A
LYS
41
E
HIS
48
A
HIS
48
E
MET
79
A
MET
79
E
THR
87
A
THR
87
E
ASN
94
A
ASN
94
E
LYS
104
A
LYS
104
E
LYS
41
A
LYS
41
E
HIS
48
A
HIS
48
E
SER
90
A
SER
90
E
LYS
91
A
LYS
91
E
ASN
94
A
ASN
94
E
LYS
104
A
LYS
104
E
LYS
61
A
LYS
61
E
ALA
64
A
ALA
64
E
ASN
71
A
ASN
71
E
SER
75
A
SER
75
E
HIS
105
A
HIS
105
E
ASN
113
A
ASN
113
E
PRO
114
A
PRO
114
E
HIS
119
A
HIS
119
E
LYS
61
A
LYS
61
E
ALA
64
A
ALA
64
E
ASN
71
A
ASN
71
E
SER
75
A
SER
75
E
HIS
105
A
HIS
105
E
ASN
113
A
ASN
113
E
ASP
121
A
ASP
121
E
VAL
124
A
VAL
124
BINDING SITE FOR RESIDUE C5P E 200
Software
10
BINDING SITE FOR RESIDUE FMT E 131
Software
5
E
HIS
12
A
HIS
12
10
1_555
E
LYS
41
A
LYS
41
10
1_555
E
VAL
43
A
VAL
43
10
1_555
E
ASN
44
A
ASN
44
10
1_555
E
THR
45
A
THR
45
10
1_555
E
HIS
119
A
HIS
119
10
1_555
E
PHE
120
A
PHE
120
10
1_555
E
FMT
131
C
FMT
10
1_555
E
HOH
255
D
HOH
10
4_556
E
HOH
262
D
HOH
10
1_555
E
GLN
11
A
GLN
11
5
1_555
E
HIS
12
A
HIS
12
5
1_555
E
HIS
119
A
HIS
119
5
1_555
E
PHE
120
A
PHE
120
5
1_555
E
C5P
200
B
C5P
5
1_555
154
P 32 2 1