0.015358 0.008867 0.000000 0.000000 0.017734 0.000000 0.000000 0.000000 0.015321 0.00000 0.00000 0.00000 CIS PROLINE - PRO E 93 CIS PROLINE - PRO E 114 Fedorov, A.A. Almo, S.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 65.114 65.114 65.272 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H14 N3 O8 P 323.197 CYTIDINE-5'-MONOPHOSPHATE non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C H2 O2 46.025 FORMIC ACID non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 Structure of the Crystalline Complex of Bovine Pancreatic Ribonuclease A and Cytidylic Acid 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 290 1 AREA DETECTOR 1993 SIEMENS-NICOLET X100 M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 13708.326 RIBONUCLEASE A 3.1.27.5 1 nat polymer 323.197 CYTIDINE-5'-MONOPHOSPHATE 1 syn non-polymer 46.025 FORMIC ACID 1 syn non-polymer 18.015 water 103 nat water RNASE A/5'-CMP no no KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMS ITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMS ITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV E polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n cattle Bos sample 9913 PANCREAS Bos taurus 2.91 57.78 5.5 pH 5.5 software software repository Initial release Version format compliance Version format compliance Data collection Refinement description Data collection Refinement description 1 0 1996-04-03 1 1 2008-03-24 1 2 2011-07-13 1 3 2019-07-17 1 4 2019-08-14 _software.classification _software.name _software.classification _software.name Y BNL 1995-11-08 REL C5P CYTIDINE-5'-MONOPHOSPHATE FMT FORMIC ACID HOH water C 200 2 C5P C5P 200 E FMT 131 3 FMT FMT 131 E HOH 201 4 HOH HOH 201 E HOH 202 4 HOH HOH 202 E HOH 203 4 HOH HOH 203 E HOH 204 4 HOH HOH 204 E HOH 205 4 HOH HOH 205 E HOH 206 4 HOH HOH 206 E HOH 207 4 HOH HOH 207 E HOH 208 4 HOH HOH 208 E HOH 209 4 HOH HOH 209 E HOH 210 4 HOH HOH 210 E HOH 211 4 HOH HOH 211 E HOH 212 4 HOH HOH 212 E HOH 213 4 HOH HOH 213 E HOH 214 4 HOH HOH 214 E HOH 215 4 HOH HOH 215 E HOH 216 4 HOH HOH 216 E HOH 217 4 HOH HOH 217 E HOH 218 4 HOH HOH 218 E HOH 219 4 HOH HOH 219 E HOH 220 4 HOH HOH 220 E HOH 221 4 HOH HOH 221 E HOH 222 4 HOH HOH 222 E HOH 223 4 HOH HOH 223 E HOH 224 4 HOH HOH 224 E HOH 225 4 HOH HOH 225 E HOH 226 4 HOH HOH 226 E HOH 227 4 HOH HOH 227 E HOH 228 4 HOH HOH 228 E HOH 229 4 HOH HOH 229 E HOH 230 4 HOH HOH 230 E HOH 231 4 HOH HOH 231 E HOH 232 4 HOH HOH 232 E HOH 233 4 HOH HOH 233 E HOH 234 4 HOH HOH 234 E HOH 235 4 HOH HOH 235 E HOH 236 4 HOH HOH 236 E HOH 237 4 HOH HOH 237 E HOH 238 4 HOH HOH 238 E HOH 239 4 HOH HOH 239 E HOH 240 4 HOH HOH 240 E HOH 241 4 HOH HOH 241 E HOH 242 4 HOH HOH 242 E HOH 243 4 HOH HOH 243 E HOH 244 4 HOH HOH 244 E HOH 245 4 HOH HOH 245 E HOH 246 4 HOH HOH 246 E HOH 247 4 HOH HOH 247 E HOH 248 4 HOH HOH 248 E HOH 249 4 HOH HOH 249 E HOH 250 4 HOH HOH 250 E HOH 251 4 HOH HOH 251 E HOH 252 4 HOH HOH 252 E HOH 253 4 HOH HOH 253 E HOH 254 4 HOH HOH 254 E HOH 255 4 HOH HOH 255 E HOH 256 4 HOH HOH 256 E HOH 257 4 HOH HOH 257 E HOH 258 4 HOH HOH 258 E HOH 259 4 HOH HOH 259 E HOH 260 4 HOH HOH 260 E HOH 261 4 HOH HOH 261 E HOH 262 4 HOH HOH 262 E HOH 263 4 HOH HOH 263 E HOH 264 4 HOH HOH 264 E HOH 265 4 HOH HOH 265 E HOH 266 4 HOH HOH 266 E HOH 267 4 HOH HOH 267 E HOH 268 4 HOH HOH 268 E HOH 269 4 HOH HOH 269 E HOH 270 4 HOH HOH 270 E HOH 271 4 HOH HOH 271 E HOH 272 4 HOH HOH 272 E HOH 273 4 HOH HOH 273 E HOH 274 4 HOH HOH 274 E HOH 275 4 HOH HOH 275 E HOH 276 4 HOH HOH 276 E HOH 277 4 HOH HOH 277 E HOH 278 4 HOH HOH 278 E HOH 279 4 HOH HOH 279 E HOH 280 4 HOH HOH 280 E HOH 281 4 HOH HOH 281 E HOH 282 4 HOH HOH 282 E HOH 283 4 HOH HOH 283 E HOH 284 4 HOH HOH 284 E HOH 285 4 HOH HOH 285 E HOH 286 4 HOH HOH 286 E HOH 287 4 HOH HOH 287 E HOH 288 4 HOH HOH 288 E HOH 289 4 HOH HOH 289 E HOH 290 4 HOH HOH 290 E HOH 291 4 HOH HOH 291 E HOH 292 4 HOH HOH 292 E HOH 293 4 HOH HOH 293 E HOH 294 4 HOH HOH 294 E HOH 295 4 HOH HOH 295 E HOH 296 4 HOH HOH 296 E HOH 297 4 HOH HOH 297 E HOH 298 4 HOH HOH 298 E HOH 299 4 HOH HOH 299 E HOH 300 4 HOH HOH 300 E HOH 301 4 HOH HOH 301 E HOH 302 4 HOH HOH 302 E HOH 303 4 HOH HOH 303 E LYS 1 n 1 LYS 1 E GLU 2 n 2 GLU 2 E THR 3 n 3 THR 3 E ALA 4 n 4 ALA 4 E ALA 5 n 5 ALA 5 E ALA 6 n 6 ALA 6 E LYS 7 n 7 LYS 7 E PHE 8 n 8 PHE 8 E GLU 9 n 9 GLU 9 E ARG 10 n 10 ARG 10 E GLN 11 n 11 GLN 11 E HIS 12 n 12 HIS 12 E MET 13 n 13 MET 13 E ASP 14 n 14 ASP 14 E SER 15 n 15 SER 15 E SER 16 n 16 SER 16 E THR 17 n 17 THR 17 E SER 18 n 18 SER 18 E ALA 19 n 19 ALA 19 E ALA 20 n 20 ALA 20 E SER 21 n 21 SER 21 E SER 22 n 22 SER 22 E SER 23 n 23 SER 23 E ASN 24 n 24 ASN 24 E TYR 25 n 25 TYR 25 E CYS 26 n 26 CYS 26 E ASN 27 n 27 ASN 27 E GLN 28 n 28 GLN 28 E MET 29 n 29 MET 29 E MET 30 n 30 MET 30 E LYS 31 n 31 LYS 31 E SER 32 n 32 SER 32 E ARG 33 n 33 ARG 33 E ASN 34 n 34 ASN 34 E LEU 35 n 35 LEU 35 E THR 36 n 36 THR 36 E LYS 37 n 37 LYS 37 E ASP 38 n 38 ASP 38 E ARG 39 n 39 ARG 39 E CYS 40 n 40 CYS 40 E LYS 41 n 41 LYS 41 E PRO 42 n 42 PRO 42 E VAL 43 n 43 VAL 43 E ASN 44 n 44 ASN 44 E THR 45 n 45 THR 45 E PHE 46 n 46 PHE 46 E VAL 47 n 47 VAL 47 E HIS 48 n 48 HIS 48 E GLU 49 n 49 GLU 49 E SER 50 n 50 SER 50 E LEU 51 n 51 LEU 51 E ALA 52 n 52 ALA 52 E ASP 53 n 53 ASP 53 E VAL 54 n 54 VAL 54 E GLN 55 n 55 GLN 55 E ALA 56 n 56 ALA 56 E VAL 57 n 57 VAL 57 E CYS 58 n 58 CYS 58 E SER 59 n 59 SER 59 E GLN 60 n 60 GLN 60 E LYS 61 n 61 LYS 61 E ASN 62 n 62 ASN 62 E VAL 63 n 63 VAL 63 E ALA 64 n 64 ALA 64 E CYS 65 n 65 CYS 65 E LYS 66 n 66 LYS 66 E ASN 67 n 67 ASN 67 E GLY 68 n 68 GLY 68 E GLN 69 n 69 GLN 69 E THR 70 n 70 THR 70 E ASN 71 n 71 ASN 71 E CYS 72 n 72 CYS 72 E TYR 73 n 73 TYR 73 E GLN 74 n 74 GLN 74 E SER 75 n 75 SER 75 E TYR 76 n 76 TYR 76 E SER 77 n 77 SER 77 E THR 78 n 78 THR 78 E MET 79 n 79 MET 79 E SER 80 n 80 SER 80 E ILE 81 n 81 ILE 81 E THR 82 n 82 THR 82 E ASP 83 n 83 ASP 83 E CYS 84 n 84 CYS 84 E ARG 85 n 85 ARG 85 E GLU 86 n 86 GLU 86 E THR 87 n 87 THR 87 E GLY 88 n 88 GLY 88 E SER 89 n 89 SER 89 E SER 90 n 90 SER 90 E LYS 91 n 91 LYS 91 E TYR 92 n 92 TYR 92 E PRO 93 n 93 PRO 93 E ASN 94 n 94 ASN 94 E CYS 95 n 95 CYS 95 E ALA 96 n 96 ALA 96 E TYR 97 n 97 TYR 97 E LYS 98 n 98 LYS 98 E THR 99 n 99 THR 99 E THR 100 n 100 THR 100 E GLN 101 n 101 GLN 101 E ALA 102 n 102 ALA 102 E ASN 103 n 103 ASN 103 E LYS 104 n 104 LYS 104 E HIS 105 n 105 HIS 105 E ILE 106 n 106 ILE 106 E ILE 107 n 107 ILE 107 E VAL 108 n 108 VAL 108 E ALA 109 n 109 ALA 109 E CYS 110 n 110 CYS 110 E GLU 111 n 111 GLU 111 E GLY 112 n 112 GLY 112 E ASN 113 n 113 ASN 113 E PRO 114 n 114 PRO 114 E TYR 115 n 115 TYR 115 E VAL 116 n 116 VAL 116 E PRO 117 n 117 PRO 117 E VAL 118 n 118 VAL 118 E HIS 119 n 119 HIS 119 E PHE 120 n 120 PHE 120 E ASP 121 n 121 ASP 121 E ALA 122 n 122 ALA 122 E SER 123 n 123 SER 123 E VAL 124 n 124 VAL 124 E author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 E O PRO 42 A O PRO 42 E N GLU 86 A N GLU 86 E N MET 79 A N MET 79 E O LYS 104 A O LYS 104 E N LYS 91 A N LYS 91 E O ASN 94 A O ASN 94 E N VAL 63 A N VAL 63 E O CYS 72 A O CYS 72 E N TYR 73 A N TYR 73 E O VAL 108 A O VAL 108 E N GLU 111 A N GLU 111 E O VAL 116 A O VAL 116 E N VAL 63 A N VAL 63 E O CYS 72 A O CYS 72 E N TYR 73 A N TYR 73 E O VAL 108 A O VAL 108 E O HIS 105 A O HIS 105 E N VAL 124 A N VAL 124 1 E HIS 48 -104.33 59.67 1 E GLN 60 -103.86 -140.33 0.17 0.17 1.80 8. 12259 1 2. 1.80 8. 106 1078 21 0 951 0.011 2.58 1.8 9.0 1RNN 13300 0.041 1 2.52 87.3 0.261 1.80 1.88 3.93 1.51 54.7 data scaling XDS model building X-PLOR refinement PROFFT refinement X-PLOR data reduction XDS phasing X-PLOR RIBONUCLEASE A, CYTIDINE-5'-MONOPHOSPHATE RIBONUCLEASE A COMPLEX WITH CYTIDYLIC ACID (5'CMP) CRYSTALLIZED FROM 8M SODIUM FORMATE 1 N N 2 N N 3 N N 4 N N E THR 3 A THR 3 HELX_P E MET 13 A MET 13 1 H1 11 E ASN 24 A ASN 24 HELX_P RESIDUE 34 IN 3/10 CONFIG E ASN 34 A ASN 34 1 H2 11 E SER 50 A SER 50 HELX_P RESIDUES 56-60 IN 3/10 CONFIG E GLN 60 A GLN 60 1 H3 11 disulf 2.018 E CYS 26 A SG CYS 26 1_555 E CYS 84 A SG CYS 84 1_555 disulf 1.993 E CYS 40 A SG CYS 40 1_555 E CYS 95 A SG CYS 95 1_555 disulf 1.973 E CYS 58 A SG CYS 58 1_555 E CYS 110 A SG CYS 110 1_555 disulf 2.026 E CYS 65 A SG CYS 65 1_555 E CYS 72 A SG CYS 72 1_555 COMPLEX (HYDROLASE/CYTIDYLIC ACID) COMPLEX (HYDROLASE-CYTIDYLIC ACID), COMPLEX (HYDROLASE-CYTIDYLIC ACID) complex E TYR 92 A TYR 92 1 E PRO 93 A PRO 93 2.36 E ASN 113 A ASN 113 1 E PRO 114 A PRO 114 0.19 RNAS1_BOVIN UNP 1 1 P61823 MALKSLVLLSLLVLVLLLVRVQPSLGKETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADV QAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV 27 150 1RNN 1 124 P61823 E 1 1 124 3 3 4 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel E LYS 41 A LYS 41 E HIS 48 A HIS 48 E MET 79 A MET 79 E THR 87 A THR 87 E ASN 94 A ASN 94 E LYS 104 A LYS 104 E LYS 41 A LYS 41 E HIS 48 A HIS 48 E SER 90 A SER 90 E LYS 91 A LYS 91 E ASN 94 A ASN 94 E LYS 104 A LYS 104 E LYS 61 A LYS 61 E ALA 64 A ALA 64 E ASN 71 A ASN 71 E SER 75 A SER 75 E HIS 105 A HIS 105 E ASN 113 A ASN 113 E PRO 114 A PRO 114 E HIS 119 A HIS 119 E LYS 61 A LYS 61 E ALA 64 A ALA 64 E ASN 71 A ASN 71 E SER 75 A SER 75 E HIS 105 A HIS 105 E ASN 113 A ASN 113 E ASP 121 A ASP 121 E VAL 124 A VAL 124 BINDING SITE FOR RESIDUE C5P E 200 Software 10 BINDING SITE FOR RESIDUE FMT E 131 Software 5 E HIS 12 A HIS 12 10 1_555 E LYS 41 A LYS 41 10 1_555 E VAL 43 A VAL 43 10 1_555 E ASN 44 A ASN 44 10 1_555 E THR 45 A THR 45 10 1_555 E HIS 119 A HIS 119 10 1_555 E PHE 120 A PHE 120 10 1_555 E FMT 131 C FMT 10 1_555 E HOH 255 D HOH 10 4_556 E HOH 262 D HOH 10 1_555 E GLN 11 A GLN 11 5 1_555 E HIS 12 A HIS 12 5 1_555 E HIS 119 A HIS 119 5 1_555 E PHE 120 A PHE 120 5 1_555 E C5P 200 B C5P 5 1_555 154 P 32 2 1