0.021038
0.000000
0.000000
0.000000
0.008374
0.000000
0.000000
0.000000
0.023842
0.00000
0.00000
0.00000
Lipps, G.
Weinzierl, A.O.
von Scheven, G.
Buchen, C.
Cramer, P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
47.532
119.424
41.943
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
Nat.Struct.Mol.Biol.
1545-9993
11
157
162
10.1038/nsmb723
14730355
Structure of a bifunctional DNA primase-polymerase
2004
10.2210/pdb1ro0/pdb
pdb_00001ro0
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2003-06-29
ADSC QUANTUM 4
MAD
M
x-ray
1
0.9793
1.0
0.9797
1.0
1.28
1.0
X06SA
SLS
0.9793, 0.9797, 1.28
SYNCHROTRON
SLS BEAMLINE X06SA
25109.846
ORF904
F50M/L107M/L110M
1
man
polymer
65.409
ZINC ION
2
syn
non-polymer
18.015
water
208
nat
water
no
no
SSERIRYAKWMLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPGGQKGMVIMDFESKEKLK
AWIGESALEELCRKTLCTNTVHGGIHIYVLSNDIPPHKINPLFEENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKCPWK
EQNYTTCYTLYNELKEISKVDLKSLLRFLAEKGKRLGITLSKTAKEWLEGHHHHHH
SSERIRYAKWMLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPGGQKGMVIMDFESKEKLK
AWIGESALEELCRKTLCTNTVHGGIHIYVLSNDIPPHKINPLFEENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKCPWK
EQNYTTCYTLYNELKEISKVDLKSLLRFLAEKGKRLGITLSKTAKEWLEGHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Sulfolobus
Escherichia
sample
43080
Sulfolobus islandicus
562
Escherichia coli
1
2.37
48.09
VAPOR DIFFUSION, HANGING DROP
8.5
Tris, sodium acetate, PEG 4000, DTT, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2004-01-27
1
1
2008-04-29
1
2
2011-07-13
1
3
2021-10-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Wild type, native
RCSB
Y
RCSB
2003-12-01
REL
REL
ZN
ZINC ION
HOH
water
ZN
1
2
ZN
ZN
301
A
ZN
2
2
ZN
ZN
302
A
TIP
1
3
HOH
HOH
303
A
TIP
2
3
HOH
HOH
304
A
TIP
3
3
HOH
HOH
305
A
TIP
4
3
HOH
HOH
306
A
TIP
5
3
HOH
HOH
307
A
TIP
6
3
HOH
HOH
308
A
TIP
7
3
HOH
HOH
309
A
TIP
8
3
HOH
HOH
310
A
TIP
9
3
HOH
HOH
311
A
TIP
10
3
HOH
HOH
312
A
TIP
11
3
HOH
HOH
313
A
TIP
12
3
HOH
HOH
314
A
TIP
13
3
HOH
HOH
315
A
TIP
14
3
HOH
HOH
316
A
TIP
15
3
HOH
HOH
317
A
TIP
16
3
HOH
HOH
318
A
TIP
17
3
HOH
HOH
319
A
TIP
18
3
HOH
HOH
320
A
TIP
19
3
HOH
HOH
321
A
TIP
20
3
HOH
HOH
322
A
TIP
21
3
HOH
HOH
323
A
TIP
22
3
HOH
HOH
324
A
TIP
23
3
HOH
HOH
325
A
TIP
24
3
HOH
HOH
326
A
TIP
25
3
HOH
HOH
327
A
TIP
26
3
HOH
HOH
328
A
TIP
27
3
HOH
HOH
329
A
TIP
28
3
HOH
HOH
330
A
TIP
29
3
HOH
HOH
331
A
TIP
30
3
HOH
HOH
332
A
TIP
31
3
HOH
HOH
333
A
TIP
32
3
HOH
HOH
334
A
TIP
33
3
HOH
HOH
335
A
TIP
34
3
HOH
HOH
336
A
TIP
35
3
HOH
HOH
337
A
TIP
36
3
HOH
HOH
338
A
TIP
37
3
HOH
HOH
339
A
TIP
38
3
HOH
HOH
340
A
TIP
39
3
HOH
HOH
341
A
TIP
40
3
HOH
HOH
342
A
TIP
41
3
HOH
HOH
343
A
TIP
42
3
HOH
HOH
344
A
TIP
43
3
HOH
HOH
345
A
TIP
44
3
HOH
HOH
346
A
TIP
45
3
HOH
HOH
347
A
TIP
46
3
HOH
HOH
348
A
TIP
47
3
HOH
HOH
349
A
TIP
48
3
HOH
HOH
350
A
TIP
49
3
HOH
HOH
351
A
TIP
50
3
HOH
HOH
352
A
TIP
51
3
HOH
HOH
353
A
TIP
52
3
HOH
HOH
354
A
TIP
53
3
HOH
HOH
355
A
TIP
54
3
HOH
HOH
356
A
TIP
55
3
HOH
HOH
357
A
TIP
56
3
HOH
HOH
358
A
TIP
57
3
HOH
HOH
359
A
TIP
58
3
HOH
HOH
360
A
TIP
59
3
HOH
HOH
361
A
TIP
60
3
HOH
HOH
362
A
TIP
61
3
HOH
HOH
363
A
TIP
62
3
HOH
HOH
364
A
TIP
63
3
HOH
HOH
365
A
TIP
64
3
HOH
HOH
366
A
TIP
65
3
HOH
HOH
367
A
TIP
66
3
HOH
HOH
368
A
TIP
67
3
HOH
HOH
369
A
TIP
68
3
HOH
HOH
370
A
TIP
69
3
HOH
HOH
371
A
TIP
70
3
HOH
HOH
372
A
TIP
71
3
HOH
HOH
373
A
TIP
72
3
HOH
HOH
374
A
TIP
73
3
HOH
HOH
375
A
TIP
74
3
HOH
HOH
376
A
TIP
75
3
HOH
HOH
377
A
TIP
76
3
HOH
HOH
378
A
TIP
77
3
HOH
HOH
379
A
TIP
78
3
HOH
HOH
380
A
TIP
79
3
HOH
HOH
381
A
TIP
80
3
HOH
HOH
382
A
TIP
81
3
HOH
HOH
383
A
TIP
82
3
HOH
HOH
384
A
TIP
83
3
HOH
HOH
385
A
TIP
84
3
HOH
HOH
386
A
TIP
85
3
HOH
HOH
387
A
TIP
86
3
HOH
HOH
388
A
TIP
87
3
HOH
HOH
389
A
TIP
88
3
HOH
HOH
390
A
TIP
89
3
HOH
HOH
391
A
TIP
90
3
HOH
HOH
392
A
TIP
91
3
HOH
HOH
393
A
TIP
92
3
HOH
HOH
394
A
TIP
93
3
HOH
HOH
395
A
TIP
94
3
HOH
HOH
396
A
TIP
95
3
HOH
HOH
397
A
TIP
96
3
HOH
HOH
398
A
TIP
97
3
HOH
HOH
399
A
TIP
98
3
HOH
HOH
400
A
TIP
99
3
HOH
HOH
401
A
TIP
100
3
HOH
HOH
402
A
TIP
101
3
HOH
HOH
403
A
TIP
102
3
HOH
HOH
404
A
TIP
103
3
HOH
HOH
405
A
TIP
104
3
HOH
HOH
406
A
TIP
105
3
HOH
HOH
407
A
TIP
106
3
HOH
HOH
408
A
TIP
107
3
HOH
HOH
409
A
TIP
108
3
HOH
HOH
410
A
TIP
109
3
HOH
HOH
411
A
TIP
110
3
HOH
HOH
412
A
TIP
111
3
HOH
HOH
413
A
TIP
112
3
HOH
HOH
414
A
TIP
113
3
HOH
HOH
415
A
TIP
114
3
HOH
HOH
416
A
TIP
115
3
HOH
HOH
417
A
TIP
116
3
HOH
HOH
418
A
TIP
117
3
HOH
HOH
419
A
TIP
118
3
HOH
HOH
420
A
TIP
119
3
HOH
HOH
421
A
TIP
120
3
HOH
HOH
422
A
TIP
121
3
HOH
HOH
423
A
TIP
122
3
HOH
HOH
424
A
TIP
123
3
HOH
HOH
425
A
TIP
124
3
HOH
HOH
426
A
TIP
125
3
HOH
HOH
427
A
TIP
126
3
HOH
HOH
428
A
TIP
127
3
HOH
HOH
429
A
TIP
128
3
HOH
HOH
430
A
TIP
129
3
HOH
HOH
431
A
TIP
130
3
HOH
HOH
432
A
TIP
131
3
HOH
HOH
433
A
TIP
132
3
HOH
HOH
434
A
TIP
133
3
HOH
HOH
435
A
TIP
134
3
HOH
HOH
436
A
TIP
135
3
HOH
HOH
437
A
TIP
136
3
HOH
HOH
438
A
TIP
137
3
HOH
HOH
439
A
TIP
138
3
HOH
HOH
440
A
TIP
139
3
HOH
HOH
441
A
TIP
140
3
HOH
HOH
442
A
TIP
141
3
HOH
HOH
443
A
TIP
142
3
HOH
HOH
444
A
TIP
143
3
HOH
HOH
445
A
TIP
144
3
HOH
HOH
446
A
TIP
145
3
HOH
HOH
447
A
TIP
146
3
HOH
HOH
448
A
TIP
147
3
HOH
HOH
449
A
TIP
148
3
HOH
HOH
450
A
TIP
149
3
HOH
HOH
451
A
TIP
150
3
HOH
HOH
452
A
TIP
151
3
HOH
HOH
453
A
TIP
152
3
HOH
HOH
454
A
TIP
153
3
HOH
HOH
455
A
TIP
154
3
HOH
HOH
456
A
TIP
155
3
HOH
HOH
457
A
TIP
156
3
HOH
HOH
458
A
TIP
157
3
HOH
HOH
459
A
TIP
158
3
HOH
HOH
460
A
TIP
159
3
HOH
HOH
461
A
TIP
160
3
HOH
HOH
462
A
TIP
161
3
HOH
HOH
463
A
TIP
162
3
HOH
HOH
464
A
TIP
163
3
HOH
HOH
465
A
TIP
164
3
HOH
HOH
466
A
TIP
165
3
HOH
HOH
467
A
TIP
166
3
HOH
HOH
468
A
TIP
167
3
HOH
HOH
469
A
TIP
168
3
HOH
HOH
470
A
TIP
169
3
HOH
HOH
471
A
TIP
170
3
HOH
HOH
472
A
TIP
171
3
HOH
HOH
473
A
TIP
172
3
HOH
HOH
474
A
TIP
173
3
HOH
HOH
475
A
TIP
174
3
HOH
HOH
476
A
TIP
175
3
HOH
HOH
477
A
TIP
176
3
HOH
HOH
478
A
TIP
177
3
HOH
HOH
479
A
TIP
178
3
HOH
HOH
480
A
TIP
179
3
HOH
HOH
481
A
TIP
180
3
HOH
HOH
482
A
TIP
181
3
HOH
HOH
483
A
TIP
182
3
HOH
HOH
484
A
TIP
183
3
HOH
HOH
485
A
TIP
184
3
HOH
HOH
486
A
TIP
185
3
HOH
HOH
487
A
TIP
186
3
HOH
HOH
488
A
TIP
187
3
HOH
HOH
489
A
TIP
188
3
HOH
HOH
490
A
TIP
189
3
HOH
HOH
491
A
TIP
190
3
HOH
HOH
492
A
TIP
191
3
HOH
HOH
493
A
TIP
192
3
HOH
HOH
494
A
TIP
193
3
HOH
HOH
495
A
TIP
194
3
HOH
HOH
496
A
TIP
195
3
HOH
HOH
497
A
TIP
196
3
HOH
HOH
498
A
TIP
197
3
HOH
HOH
499
A
TIP
198
3
HOH
HOH
500
A
TIP
199
3
HOH
HOH
501
A
TIP
200
3
HOH
HOH
502
A
TIP
201
3
HOH
HOH
503
A
TIP
202
3
HOH
HOH
504
A
TIP
203
3
HOH
HOH
505
A
TIP
204
3
HOH
HOH
506
A
TIP
205
3
HOH
HOH
507
A
TIP
206
3
HOH
HOH
508
A
TIP
207
3
HOH
HOH
509
A
TIP
208
3
HOH
HOH
510
A
SER
40
n
1
SER
40
A
SER
41
n
2
SER
41
A
GLU
42
n
3
GLU
42
A
ARG
43
n
4
ARG
43
A
ILE
44
n
5
ILE
44
A
ARG
45
n
6
ARG
45
A
TYR
46
n
7
TYR
46
A
ALA
47
n
8
ALA
47
A
LYS
48
n
9
LYS
48
A
TRP
49
n
10
TRP
49
A
MET
50
n
11
MET
50
A
LEU
51
n
12
LEU
51
A
GLU
52
n
13
GLU
52
A
HIS
53
n
14
HIS
53
A
GLY
54
n
15
GLY
54
A
PHE
55
n
16
PHE
55
A
ASN
56
n
17
ASN
56
A
ILE
57
n
18
ILE
57
A
ILE
58
n
19
ILE
58
A
PRO
59
n
20
PRO
59
A
ILE
60
n
21
ILE
60
A
ASP
61
n
22
ASP
61
A
PRO
62
n
23
PRO
62
A
GLU
63
n
24
GLU
63
A
SER
64
n
25
SER
64
A
LYS
65
n
26
LYS
65
A
LYS
66
n
27
LYS
66
A
PRO
67
n
28
PRO
67
A
VAL
68
n
29
VAL
68
A
LEU
69
n
30
LEU
69
A
LYS
70
n
31
LYS
70
A
GLU
71
n
32
GLU
71
A
TRP
72
n
33
TRP
72
A
GLN
73
n
34
GLN
73
A
LYS
74
n
35
LYS
74
A
TYR
75
n
36
TYR
75
A
SER
76
n
37
SER
76
A
HIS
77
n
38
HIS
77
A
GLU
78
n
39
GLU
78
A
MET
79
n
40
MET
79
A
PRO
80
n
41
PRO
80
A
SER
81
n
42
SER
81
A
ASP
82
n
43
ASP
82
A
GLU
83
n
44
GLU
83
A
GLU
84
n
45
GLU
84
A
LYS
85
n
46
LYS
85
A
GLN
86
n
47
GLN
86
A
ARG
87
n
48
ARG
87
A
PHE
88
n
49
PHE
88
A
LEU
89
n
50
LEU
89
A
LYS
90
n
51
LYS
90
A
MET
91
n
52
MET
91
A
ILE
92
n
53
ILE
92
A
GLU
93
n
54
GLU
93
A
GLU
94
n
55
GLU
94
A
GLY
95
n
56
GLY
95
A
TYR
96
n
57
TYR
96
A
ASN
97
n
58
ASN
97
A
TYR
98
n
59
TYR
98
A
ALA
99
n
60
ALA
99
A
ILE
100
n
61
ILE
100
A
PRO
101
n
62
PRO
101
A
GLY
102
n
63
GLY
102
A
GLY
103
n
64
GLY
103
A
GLN
104
n
65
GLN
104
A
LYS
105
n
66
LYS
105
A
GLY
106
n
67
GLY
106
A
MET
107
n
68
MET
107
A
VAL
108
n
69
VAL
108
A
ILE
109
n
70
ILE
109
A
MET
110
n
71
MET
110
A
ASP
111
n
72
ASP
111
A
PHE
112
n
73
PHE
112
A
GLU
113
n
74
GLU
113
A
SER
114
n
75
SER
114
A
LYS
115
n
76
LYS
115
A
GLU
116
n
77
GLU
116
A
LYS
117
n
78
LYS
117
A
LEU
118
n
79
LEU
118
A
LYS
119
n
80
LYS
119
A
ALA
120
n
81
ALA
120
A
TRP
121
n
82
TRP
121
A
ILE
122
n
83
ILE
122
A
GLY
123
n
84
GLY
123
A
GLU
124
n
85
GLU
124
A
SER
125
n
86
SER
125
A
ALA
126
n
87
ALA
126
A
LEU
127
n
88
LEU
127
A
GLU
128
n
89
GLU
128
A
GLU
129
n
90
GLU
129
A
LEU
130
n
91
LEU
130
A
CYS
131
n
92
CYS
131
A
ARG
132
n
93
ARG
132
A
LYS
133
n
94
LYS
133
A
THR
134
n
95
THR
134
A
LEU
135
n
96
LEU
135
A
CYS
136
n
97
CYS
136
A
THR
137
n
98
THR
137
A
ASN
138
n
99
ASN
138
A
THR
139
n
100
THR
139
A
VAL
140
n
101
VAL
140
A
HIS
141
n
102
HIS
141
A
GLY
142
n
103
GLY
142
A
GLY
143
n
104
GLY
143
A
ILE
144
n
105
ILE
144
A
HIS
145
n
106
HIS
145
A
ILE
146
n
107
ILE
146
A
TYR
147
n
108
TYR
147
A
VAL
148
n
109
VAL
148
A
LEU
149
n
110
LEU
149
A
SER
150
n
111
SER
150
A
ASN
151
n
112
ASN
151
A
ASP
152
n
113
ASP
152
A
ILE
153
n
114
ILE
153
A
PRO
154
n
115
PRO
154
A
PRO
155
n
116
PRO
155
A
HIS
156
n
117
HIS
156
A
LYS
157
n
118
LYS
157
A
ILE
158
n
119
ILE
158
A
ASN
159
n
120
ASN
159
A
PRO
160
n
121
PRO
160
A
LEU
161
n
122
LEU
161
A
PHE
162
n
123
PHE
162
A
GLU
163
n
124
GLU
163
A
GLU
164
n
125
GLU
164
A
ASN
165
n
126
ASN
165
A
GLY
166
n
127
GLY
166
A
LYS
167
n
128
LYS
167
A
GLY
168
n
129
GLY
168
A
ILE
169
n
130
ILE
169
A
ILE
170
n
131
ILE
170
A
ASP
171
n
132
ASP
171
A
LEU
172
n
133
LEU
172
A
GLN
173
n
134
GLN
173
A
SER
174
n
135
SER
174
A
TYR
175
n
136
TYR
175
A
ASN
176
n
137
ASN
176
A
SER
177
n
138
SER
177
A
TYR
178
n
139
TYR
178
A
VAL
179
n
140
VAL
179
A
LEU
180
n
141
LEU
180
A
GLY
181
n
142
GLY
181
A
LEU
182
n
143
LEU
182
A
GLY
183
n
144
GLY
183
A
SER
184
n
145
SER
184
A
CYS
185
n
146
CYS
185
A
VAL
186
n
147
VAL
186
A
ASN
187
n
148
ASN
187
A
HIS
188
n
149
HIS
188
A
LEU
189
n
150
LEU
189
A
HIS
190
n
151
HIS
190
A
CYS
191
n
152
CYS
191
A
THR
192
n
153
THR
192
A
THR
193
n
154
THR
193
A
ASP
194
n
155
ASP
194
A
LYS
195
n
156
LYS
195
A
CYS
196
n
157
CYS
196
A
PRO
197
n
158
PRO
197
A
TRP
198
n
159
TRP
198
A
LYS
199
n
160
LYS
199
A
GLU
200
n
161
GLU
200
A
GLN
201
n
162
GLN
201
A
ASN
202
n
163
ASN
202
A
TYR
203
n
164
TYR
203
A
THR
204
n
165
THR
204
A
THR
205
n
166
THR
205
A
CYS
206
n
167
CYS
206
A
TYR
207
n
168
TYR
207
A
THR
208
n
169
THR
208
A
LEU
209
n
170
LEU
209
A
TYR
210
n
171
TYR
210
A
ASN
211
n
172
ASN
211
A
GLU
212
n
173
GLU
212
A
LEU
213
n
174
LEU
213
A
LYS
214
n
175
LYS
214
A
GLU
215
n
176
GLU
215
A
ILE
216
n
177
ILE
216
A
SER
217
n
178
SER
217
A
LYS
218
n
179
LYS
218
A
VAL
219
n
180
VAL
219
A
ASP
220
n
181
ASP
220
A
LEU
221
n
182
LEU
221
A
LYS
222
n
183
LYS
222
A
SER
223
n
184
SER
223
A
LEU
224
n
185
LEU
224
A
LEU
225
n
186
LEU
225
A
ARG
226
n
187
ARG
226
A
PHE
227
n
188
PHE
227
A
LEU
228
n
189
LEU
228
A
ALA
229
n
190
ALA
229
A
GLU
230
n
191
GLU
230
A
LYS
231
n
192
LYS
231
A
GLY
232
n
193
GLY
232
A
LYS
233
n
194
LYS
233
A
ARG
234
n
195
ARG
234
A
LEU
235
n
196
LEU
235
A
GLY
236
n
197
GLY
236
A
ILE
237
n
198
ILE
237
A
THR
238
n
199
THR
238
A
LEU
239
n
200
LEU
239
A
SER
240
n
201
SER
240
A
LYS
241
n
202
LYS
241
A
THR
242
n
203
THR
242
A
ALA
243
n
204
ALA
243
A
LYS
244
n
205
LYS
244
A
GLU
245
n
206
GLU
245
A
TRP
246
n
207
TRP
246
A
LEU
247
n
208
LEU
247
A
GLU
248
n
209
GLU
248
A
GLY
249
n
210
GLY
249
A
n
211
250
A
n
212
251
A
n
213
252
A
n
214
253
A
n
215
254
A
n
216
255
A
author_defined_assembly
1
monomeric
A
HIS
53
A
NE2
HIS
14
1_555
A
ZN
302
C
ZN
ZN
1_555
A
GLU
215
A
OE2
GLU
176
1_555
111.8
A
HIS
53
A
NE2
HIS
14
1_555
A
ZN
302
C
ZN
ZN
1_555
A
GLU
215
A
OE1
GLU
176
1_555
100.6
A
GLU
215
A
OE2
GLU
176
1_555
A
ZN
302
C
ZN
ZN
1_555
A
GLU
215
A
OE1
GLU
176
1_555
54.3
A
HIS
53
A
NE2
HIS
14
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HOH
319
D
O
HOH
1_555
112.0
A
GLU
215
A
OE2
GLU
176
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HOH
319
D
O
HOH
1_555
117.2
A
GLU
215
A
OE1
GLU
176
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HOH
319
D
O
HOH
1_555
75.1
A
HIS
53
A
NE2
HIS
14
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HOH
483
D
O
HOH
1_555
80.0
A
GLU
215
A
OE2
GLU
176
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HOH
483
D
O
HOH
1_555
149.7
A
GLU
215
A
OE1
GLU
176
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HOH
483
D
O
HOH
1_555
153.9
A
HOH
319
D
O
HOH
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HOH
483
D
O
HOH
1_555
80.4
A
HIS
141
A
NE2
HIS
102
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HIS
188
A
ND1
HIS
149
1_555
106.3
A
HIS
141
A
NE2
HIS
102
1_555
A
ZN
301
B
ZN
ZN
1_555
A
CYS
191
A
SG
CYS
152
1_555
139.4
A
HIS
188
A
ND1
HIS
149
1_555
A
ZN
301
B
ZN
ZN
1_555
A
CYS
191
A
SG
CYS
152
1_555
110.4
A
HIS
141
A
NE2
HIS
102
1_555
A
ZN
301
B
ZN
ZN
1_555
A
CYS
196
A
SG
CYS
157
1_555
97.7
A
HIS
188
A
ND1
HIS
149
1_555
A
ZN
301
B
ZN
ZN
1_555
A
CYS
196
A
SG
CYS
157
1_555
96.0
A
CYS
191
A
SG
CYS
152
1_555
A
ZN
301
B
ZN
ZN
1_555
A
CYS
196
A
SG
CYS
157
1_555
95.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
60
A
N
ILE
21
A
O
ASN
97
A
O
ASN
58
A
N
ILE
100
A
N
ILE
61
A
O
VAL
179
A
O
VAL
140
A
O
THR
208
A
O
THR
169
A
N
ASN
138
A
N
ASN
99
A
N
THR
137
A
N
THR
98
A
O
HIS
145
A
O
HIS
106
A
O
ILE
146
A
O
ILE
107
A
N
MET
110
A
N
MET
71
A
N
ILE
109
A
N
ILE
70
A
O
GLN
173
A
O
GLN
134
A
O
LYS
167
A
O
LYS
128
A
N
GLU
164
A
N
GLU
125
A
N
GLU
163
A
N
GLU
124
A
O
THR
238
A
O
THR
199
A
N
VAL
186
A
N
VAL
147
A
O
THR
205
A
O
THR
166
1
A
HIS
250
A
HIS
211
1
Y
1
A
HIS
251
A
HIS
212
1
Y
1
A
HIS
252
A
HIS
213
1
Y
1
A
HIS
253
A
HIS
214
1
Y
1
A
HIS
254
A
HIS
215
1
Y
1
A
HIS
255
A
HIS
216
1
Y
1
A
A
O
O
HOH
HOH
440
483
2.02
1
A
A
O
O
HOH
HOH
429
503
2.19
1
A
A
O
O
HOH
HOH
454
454
1.89
1_555
2_575
1
A
GLU
71
-96.57
51.30
1
A
SER
81
87.58
159.34
1
A
SER
174
-122.73
-143.16
1
A
TRP
198
-99.94
36.51
1
A
LYS
199
-39.32
116.65
1
A
ASN
211
-137.30
-84.28
0.2428
0.2324
1.8
20
1248
21043
random
1
THROUGHOUT
MAD
Engh & Huber
1.8
20
208
1913
2
0
1703
1.8
20
1RO0
22672
0.053
1
4.0
99.2
0.322
1.8
1.86
99.6
data reduction
DENZO
data scaling
SCALEPACK
phasing
SOLVE
refinement
CNS
Bifunctional DNA primase/polymerase domain of ORF904 from the archaeal plasmid pRN1- Triple mutant F50M/L107M/L110M SeMet remote
1
N
N
2
N
N
2
N
N
3
N
N
A
SER
41
A
SER
2
HELX_P
A
HIS
53
A
HIS
14
1
1
13
A
GLU
71
A
GLU
32
HELX_P
A
HIS
77
A
HIS
38
5
2
7
A
PRO
80
A
PRO
41
HELX_P
A
GLU
94
A
GLU
55
1
3
15
A
GLY
103
A
GLY
64
HELX_P
A
LYS
105
A
LYS
66
5
4
3
A
SER
114
A
SER
75
HELX_P
A
GLY
123
A
GLY
84
1
5
10
A
GLY
123
A
GLY
84
HELX_P
A
THR
134
A
THR
95
1
6
12
A
LEU
189
A
LEU
150
HELX_P
A
CYS
191
A
CYS
152
5
7
3
A
ASP
220
A
ASP
181
HELX_P
A
LYS
233
A
LYS
194
1
8
14
A
SER
240
A
SER
201
HELX_P
A
GLY
249
A
GLY
210
1
9
10
disulf
2.042
A
CYS
131
A
SG
CYS
92
1_555
A
CYS
136
A
SG
CYS
97
1_555
disulf
2.035
A
CYS
185
A
SG
CYS
146
1_555
A
CYS
206
A
SG
CYS
167
1_555
metalc
2.178
A
HIS
53
A
NE2
HIS
14
1_555
A
ZN
302
C
ZN
ZN
1_555
metalc
2.457
A
HIS
141
A
NE2
HIS
102
1_555
A
ZN
301
B
ZN
ZN
1_555
metalc
2.298
A
HIS
188
A
ND1
HIS
149
1_555
A
ZN
301
B
ZN
ZN
1_555
metalc
2.761
A
CYS
191
A
SG
CYS
152
1_555
A
ZN
301
B
ZN
ZN
1_555
metalc
2.786
A
CYS
196
A
SG
CYS
157
1_555
A
ZN
301
B
ZN
ZN
1_555
metalc
2.283
A
GLU
215
A
OE2
GLU
176
1_555
A
ZN
302
C
ZN
ZN
1_555
metalc
2.523
A
GLU
215
A
OE1
GLU
176
1_555
A
ZN
302
C
ZN
ZN
1_555
metalc
2.708
A
ZN
302
C
ZN
ZN
1_555
A
HOH
319
D
O
HOH
1_555
metalc
1.946
A
ZN
302
C
ZN
ZN
1_555
A
HOH
483
D
O
HOH
1_555
REPLICATION
DNA polymerase, primase, replication, polymerization, evolution of nucleic acid polymerizing enzymes
A
ASN
159
A
ASN
120
1
A
PRO
160
A
PRO
121
-0.11
Q54324_SULIS
UNP
1
40
Q54324
SSERIRYAKWFLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPGGQKGLVILDFESKEKLK
AWIGESALEELCRKTLCTNTVHGGIHIYVLSNDIPPHKINPLFEENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKCPWK
EQNYTTCYTLYNELKEISKVDLKSLLRFLAEKGKRLGITLSKTAKEWLEG
40
249
1RO0
40
249
Q54324
A
1
1
210
1
PHE
engineered mutation
MET
50
1RO0
A
Q54324
UNP
50
11
1
LEU
engineered mutation
MET
107
1RO0
A
Q54324
UNP
107
68
1
LEU
engineered mutation
MET
110
1RO0
A
Q54324
UNP
110
71
1
expression tag
HIS
250
1RO0
A
Q54324
UNP
211
1
expression tag
HIS
251
1RO0
A
Q54324
UNP
212
1
expression tag
HIS
252
1RO0
A
Q54324
UNP
213
1
expression tag
HIS
253
1RO0
A
Q54324
UNP
214
1
expression tag
HIS
254
1RO0
A
Q54324
UNP
215
1
expression tag
HIS
255
1RO0
A
Q54324
UNP
216
3
7
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
58
A
ILE
19
A
ILE
60
A
ILE
21
A
ASN
97
A
ASN
58
A
PRO
101
A
PRO
62
A
TYR
178
A
TYR
139
A
LEU
180
A
LEU
141
A
THR
208
A
THR
169
A
LEU
209
A
LEU
170
A
CYS
136
A
CYS
97
A
ASN
138
A
ASN
99
A
ILE
144
A
ILE
105
A
LEU
149
A
LEU
110
A
MET
107
A
MET
68
A
PHE
112
A
PHE
73
A
LYS
167
A
LYS
128
A
GLN
173
A
GLN
134
A
PHE
162
A
PHE
123
A
GLU
164
A
GLU
125
A
ILE
237
A
ILE
198
A
LEU
239
A
LEU
200
A
CYS
185
A
CYS
146
A
ASN
187
A
ASN
148
A
THR
204
A
THR
165
A
CYS
206
A
CYS
167
BINDING SITE FOR RESIDUE ZN A 301
A
ZN
301
Software
4
BINDING SITE FOR RESIDUE ZN A 302
A
ZN
302
Software
4
A
HIS
141
A
HIS
102
4
1_555
A
HIS
188
A
HIS
149
4
1_555
A
CYS
191
A
CYS
152
4
1_555
A
CYS
196
A
CYS
157
4
1_555
A
HIS
53
A
HIS
14
4
1_555
A
GLU
215
A
GLU
176
4
1_555
A
HOH
319
D
HOH
4
1_555
A
HOH
483
D
HOH
4
1_555
18
P 21 21 2