0.008278
0.000000
0.000000
0.000000
0.015773
0.000000
0.000000
0.000000
0.025840
0.00000
0.00000
0.00000
Davies II, J.F.
Almassy, R.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
120.800
63.400
38.700
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
76
1123
1133
10.1016/0092-8674(94)90388-3
8137427
2.3 A crystal structure of the catalytic domain of DNA polymerase beta.
1994
10.2210/pdb1rpl/pdb
pdb_00001rpl
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
29145.980
DNA POLYMERASE BETA
1
man
polymer
18.015
water
59
nat
water
no
no
LEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLN
EVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSE
NDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEQDIFDYIQ
WRYREPKDRSE
LEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLN
EVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSE
NDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEQDIFDYIQ
WRYREPKDRSE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Norway rat
Rattus
Escherichia
sample
10116
Rattus norvegicus
562
Escherichia coli
2.54
51.60
pdbx_database_status
struct_conf
struct_conf_type
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Other
Data collection
Database references
1
0
1995-01-26
1
1
2008-03-24
1
2
2011-07-13
1
3
2017-11-29
1
4
2024-02-14
_pdbx_database_status.process_site
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Y
BNL
1994-10-25
REL
HOH
water
HOH
401
2
HOH
HOH
401
A
HOH
402
2
HOH
HOH
402
A
HOH
403
2
HOH
HOH
403
A
HOH
404
2
HOH
HOH
404
A
HOH
405
2
HOH
HOH
405
A
HOH
406
2
HOH
HOH
406
A
HOH
407
2
HOH
HOH
407
A
HOH
408
2
HOH
HOH
408
A
HOH
409
2
HOH
HOH
409
A
HOH
410
2
HOH
HOH
410
A
HOH
411
2
HOH
HOH
411
A
HOH
412
2
HOH
HOH
412
A
HOH
413
2
HOH
HOH
413
A
HOH
414
2
HOH
HOH
414
A
HOH
415
2
HOH
HOH
415
A
HOH
417
2
HOH
HOH
417
A
HOH
418
2
HOH
HOH
418
A
HOH
419
2
HOH
HOH
419
A
HOH
420
2
HOH
HOH
420
A
HOH
421
2
HOH
HOH
421
A
HOH
422
2
HOH
HOH
422
A
HOH
423
2
HOH
HOH
423
A
HOH
424
2
HOH
HOH
424
A
HOH
425
2
HOH
HOH
425
A
HOH
427
2
HOH
HOH
427
A
HOH
428
2
HOH
HOH
428
A
HOH
429
2
HOH
HOH
429
A
HOH
430
2
HOH
HOH
430
A
HOH
431
2
HOH
HOH
431
A
HOH
432
2
HOH
HOH
432
A
HOH
433
2
HOH
HOH
433
A
HOH
434
2
HOH
HOH
434
A
HOH
435
2
HOH
HOH
435
A
HOH
436
2
HOH
HOH
436
A
HOH
437
2
HOH
HOH
437
A
HOH
438
2
HOH
HOH
438
A
HOH
439
2
HOH
HOH
439
A
HOH
440
2
HOH
HOH
440
A
HOH
441
2
HOH
HOH
441
A
HOH
442
2
HOH
HOH
442
A
HOH
443
2
HOH
HOH
443
A
HOH
444
2
HOH
HOH
444
A
HOH
445
2
HOH
HOH
445
A
HOH
446
2
HOH
HOH
446
A
HOH
447
2
HOH
HOH
447
A
HOH
448
2
HOH
HOH
448
A
HOH
449
2
HOH
HOH
449
A
HOH
450
2
HOH
HOH
450
A
HOH
451
2
HOH
HOH
451
A
HOH
452
2
HOH
HOH
452
A
HOH
453
2
HOH
HOH
453
A
HOH
454
2
HOH
HOH
454
A
HOH
455
2
HOH
HOH
455
A
HOH
456
2
HOH
HOH
456
A
HOH
457
2
HOH
HOH
457
A
HOH
458
2
HOH
HOH
458
A
HOH
459
2
HOH
HOH
459
A
HOH
460
2
HOH
HOH
460
A
HOH
461
2
HOH
HOH
461
A
n
1
85
A
n
2
86
A
n
3
87
A
n
4
88
A
n
5
89
A
n
6
90
A
n
7
91
A
n
8
92
A
n
9
93
A
n
10
94
A
SER
95
n
11
SER
95
A
SER
96
n
12
SER
96
A
ILE
97
n
13
ILE
97
A
ASN
98
n
14
ASN
98
A
PHE
99
n
15
PHE
99
A
LEU
100
n
16
LEU
100
A
THR
101
n
17
THR
101
A
ARG
102
n
18
ARG
102
A
VAL
103
n
19
VAL
103
A
THR
104
n
20
THR
104
A
GLY
105
n
21
GLY
105
A
ILE
106
n
22
ILE
106
A
GLY
107
n
23
GLY
107
A
PRO
108
n
24
PRO
108
A
SER
109
n
25
SER
109
A
ALA
110
n
26
ALA
110
A
ALA
111
n
27
ALA
111
A
ARG
112
n
28
ARG
112
A
LYS
113
n
29
LYS
113
A
LEU
114
n
30
LEU
114
A
VAL
115
n
31
VAL
115
A
ASP
116
n
32
ASP
116
A
GLU
117
n
33
GLU
117
A
GLY
118
n
34
GLY
118
A
ILE
119
n
35
ILE
119
A
LYS
120
n
36
LYS
120
A
THR
121
n
37
THR
121
A
LEU
122
n
38
LEU
122
A
GLU
123
n
39
GLU
123
A
ASP
124
n
40
ASP
124
A
LEU
125
n
41
LEU
125
A
ARG
126
n
42
ARG
126
A
LYS
127
n
43
LYS
127
A
ASN
128
n
44
ASN
128
A
GLU
129
n
45
GLU
129
A
ASP
130
n
46
ASP
130
A
LYS
131
n
47
LYS
131
A
LEU
132
n
48
LEU
132
A
ASN
133
n
49
ASN
133
A
HIS
134
n
50
HIS
134
A
HIS
135
n
51
HIS
135
A
GLN
136
n
52
GLN
136
A
ARG
137
n
53
ARG
137
A
ILE
138
n
54
ILE
138
A
GLY
139
n
55
GLY
139
A
LEU
140
n
56
LEU
140
A
LYS
141
n
57
LYS
141
A
TYR
142
n
58
TYR
142
A
PHE
143
n
59
PHE
143
A
GLU
144
n
60
GLU
144
A
ASP
145
n
61
ASP
145
A
PHE
146
n
62
PHE
146
A
GLU
147
n
63
GLU
147
A
LYS
148
n
64
LYS
148
A
ARG
149
n
65
ARG
149
A
ILE
150
n
66
ILE
150
A
PRO
151
n
67
PRO
151
A
ARG
152
n
68
ARG
152
A
GLU
153
n
69
GLU
153
A
GLU
154
n
70
GLU
154
A
MET
155
n
71
MET
155
A
LEU
156
n
72
LEU
156
A
GLN
157
n
73
GLN
157
A
MET
158
n
74
MET
158
A
GLN
159
n
75
GLN
159
A
ASP
160
n
76
ASP
160
A
ILE
161
n
77
ILE
161
A
VAL
162
n
78
VAL
162
A
LEU
163
n
79
LEU
163
A
ASN
164
n
80
ASN
164
A
GLU
165
n
81
GLU
165
A
VAL
166
n
82
VAL
166
A
LYS
167
n
83
LYS
167
A
LYS
168
n
84
LYS
168
A
LEU
169
n
85
LEU
169
A
ASP
170
n
86
ASP
170
A
PRO
171
n
87
PRO
171
A
GLU
172
n
88
GLU
172
A
TYR
173
n
89
TYR
173
A
ILE
174
n
90
ILE
174
A
ALA
175
n
91
ALA
175
A
THR
176
n
92
THR
176
A
VAL
177
n
93
VAL
177
A
CYS
178
n
94
CYS
178
A
GLY
179
n
95
GLY
179
A
SER
180
n
96
SER
180
A
PHE
181
n
97
PHE
181
A
ARG
182
n
98
ARG
182
A
ARG
183
n
99
ARG
183
A
GLY
184
n
100
GLY
184
A
ALA
185
n
101
ALA
185
A
GLU
186
n
102
GLU
186
A
SER
187
n
103
SER
187
A
SER
188
n
104
SER
188
A
GLY
189
n
105
GLY
189
A
ASP
190
n
106
ASP
190
A
MET
191
n
107
MET
191
A
ASP
192
n
108
ASP
192
A
VAL
193
n
109
VAL
193
A
LEU
194
n
110
LEU
194
A
LEU
195
n
111
LEU
195
A
THR
196
n
112
THR
196
A
HIS
197
n
113
HIS
197
A
PRO
198
n
114
PRO
198
A
ASN
199
n
115
ASN
199
A
PHE
200
n
116
PHE
200
A
THR
201
n
117
THR
201
A
SER
202
n
118
SER
202
A
GLU
203
n
119
GLU
203
A
SER
204
n
120
SER
204
A
SER
205
n
121
SER
205
A
LYS
206
n
122
LYS
206
A
GLN
207
n
123
GLN
207
A
PRO
208
n
124
PRO
208
A
LYS
209
n
125
LYS
209
A
LEU
210
n
126
LEU
210
A
LEU
211
n
127
LEU
211
A
HIS
212
n
128
HIS
212
A
ARG
213
n
129
ARG
213
A
VAL
214
n
130
VAL
214
A
VAL
215
n
131
VAL
215
A
GLU
216
n
132
GLU
216
A
GLN
217
n
133
GLN
217
A
LEU
218
n
134
LEU
218
A
GLN
219
n
135
GLN
219
A
LYS
220
n
136
LYS
220
A
VAL
221
n
137
VAL
221
A
ARG
222
n
138
ARG
222
A
PHE
223
n
139
PHE
223
A
ILE
224
n
140
ILE
224
A
THR
225
n
141
THR
225
A
ASP
226
n
142
ASP
226
A
THR
227
n
143
THR
227
A
LEU
228
n
144
LEU
228
A
SER
229
n
145
SER
229
A
LYS
230
n
146
LYS
230
A
GLY
231
n
147
GLY
231
A
GLU
232
n
148
GLU
232
A
THR
233
n
149
THR
233
A
LYS
234
n
150
LYS
234
A
PHE
235
n
151
PHE
235
A
MET
236
n
152
MET
236
A
GLY
237
n
153
GLY
237
A
VAL
238
n
154
VAL
238
A
CYS
239
n
155
CYS
239
A
GLN
240
n
156
GLN
240
A
LEU
241
n
157
LEU
241
A
PRO
242
n
158
PRO
242
A
SER
243
n
159
SER
243
A
GLU
244
n
160
GLU
244
A
ASN
245
n
161
ASN
245
A
ASP
246
n
162
ASP
246
A
GLU
247
n
163
GLU
247
A
ASN
248
n
164
ASN
248
A
GLU
249
n
165
GLU
249
A
TYR
250
n
166
TYR
250
A
PRO
251
n
167
PRO
251
A
HIS
252
n
168
HIS
252
A
ARG
253
n
169
ARG
253
A
ARG
254
n
170
ARG
254
A
ILE
255
n
171
ILE
255
A
ASP
256
n
172
ASP
256
A
ILE
257
n
173
ILE
257
A
ARG
258
n
174
ARG
258
A
LEU
259
n
175
LEU
259
A
ILE
260
n
176
ILE
260
A
PRO
261
n
177
PRO
261
A
LYS
262
n
178
LYS
262
A
ASP
263
n
179
ASP
263
A
GLN
264
n
180
GLN
264
A
TYR
265
n
181
TYR
265
A
TYR
266
n
182
TYR
266
A
CYS
267
n
183
CYS
267
A
GLY
268
n
184
GLY
268
A
VAL
269
n
185
VAL
269
A
LEU
270
n
186
LEU
270
A
TYR
271
n
187
TYR
271
A
PHE
272
n
188
PHE
272
A
THR
273
n
189
THR
273
A
GLY
274
n
190
GLY
274
A
SER
275
n
191
SER
275
A
ASP
276
n
192
ASP
276
A
ILE
277
n
193
ILE
277
A
PHE
278
n
194
PHE
278
A
ASN
279
n
195
ASN
279
A
LYS
280
n
196
LYS
280
A
ASN
281
n
197
ASN
281
A
MET
282
n
198
MET
282
A
ARG
283
n
199
ARG
283
A
ALA
284
n
200
ALA
284
A
HIS
285
n
201
HIS
285
A
ALA
286
n
202
ALA
286
A
LEU
287
n
203
LEU
287
A
GLU
288
n
204
GLU
288
A
LYS
289
n
205
LYS
289
A
GLY
290
n
206
GLY
290
A
PHE
291
n
207
PHE
291
A
THR
292
n
208
THR
292
A
ILE
293
n
209
ILE
293
A
ASN
294
n
210
ASN
294
A
GLU
295
n
211
GLU
295
A
TYR
296
n
212
TYR
296
A
THR
297
n
213
THR
297
A
ILE
298
n
214
ILE
298
A
ARG
299
n
215
ARG
299
A
PRO
300
n
216
PRO
300
A
LEU
301
n
217
LEU
301
A
GLY
302
n
218
GLY
302
A
VAL
303
n
219
VAL
303
A
THR
304
n
220
THR
304
A
GLY
305
n
221
GLY
305
A
VAL
306
n
222
VAL
306
A
ALA
307
n
223
ALA
307
A
GLY
308
n
224
GLY
308
A
GLU
309
n
225
GLU
309
A
PRO
310
n
226
PRO
310
A
LEU
311
n
227
LEU
311
A
PRO
312
n
228
PRO
312
A
VAL
313
n
229
VAL
313
A
ASP
314
n
230
ASP
314
A
SER
315
n
231
SER
315
A
GLU
316
n
232
GLU
316
A
GLN
317
n
233
GLN
317
A
ASP
318
n
234
ASP
318
A
ILE
319
n
235
ILE
319
A
PHE
320
n
236
PHE
320
A
ASP
321
n
237
ASP
321
A
TYR
322
n
238
TYR
322
A
ILE
323
n
239
ILE
323
A
GLN
324
n
240
GLN
324
A
TRP
325
n
241
TRP
325
A
ARG
326
n
242
ARG
326
A
TYR
327
n
243
TYR
327
A
ARG
328
n
244
ARG
328
A
GLU
329
n
245
GLU
329
A
PRO
330
n
246
PRO
330
A
LYS
331
n
247
LYS
331
A
ASP
332
n
248
ASP
332
A
ARG
333
n
249
ARG
333
A
SER
334
n
250
SER
334
A
GLU
335
n
251
GLU
335
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
LEU
85
A
LEU
1
1
Y
1
A
GLU
86
A
GLU
2
1
Y
1
A
LYS
87
A
LYS
3
1
Y
1
A
ILE
88
A
ILE
4
1
Y
1
A
ARG
89
A
ARG
5
1
Y
1
A
GLN
90
A
GLN
6
1
Y
1
A
ASP
91
A
ASP
7
1
Y
1
A
ASP
92
A
ASP
8
1
Y
1
A
THR
93
A
THR
9
1
Y
1
A
SER
94
A
SER
10
1
Y
1
3.60
0.50
120.30
123.90
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
126
126
126
N
1
13.26
2.20
113.40
126.66
A
A
A
CA
CB
CG
LYS
LYS
LYS
141
141
141
N
1
5.02
0.50
120.30
125.32
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
152
152
152
N
1
-4.40
0.60
121.00
116.60
A
A
A
CB
CG
CD2
TYR
TYR
TYR
173
173
173
N
1
18.22
2.30
115.30
133.52
A
A
A
CA
CB
CG
LEU
LEU
LEU
195
195
195
N
1
18.11
2.70
111.00
129.11
A
A
A
N
CA
C
LYS
LYS
LYS
206
206
206
N
1
3.53
0.50
120.30
123.83
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
222
222
222
N
1
-11.70
1.90
113.40
101.70
A
A
A
CA
CB
CG
TYR
TYR
TYR
250
250
250
N
1
4.81
0.50
120.30
125.11
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
253
253
253
N
1
-5.84
0.50
120.30
114.46
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
253
253
253
N
1
7.92
0.50
120.30
128.22
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
254
254
254
N
1
-7.84
0.50
120.30
112.46
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
254
254
254
N
1
-3.77
0.50
120.30
116.53
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
258
258
258
N
1
-12.38
1.90
113.40
101.02
A
A
A
CA
CB
CG
TYR
TYR
TYR
266
266
266
N
1
-20.57
2.20
117.20
96.63
A
A
A
CA
C
N
GLY
GLY
SER
274
274
275
Y
1
12.28
1.60
122.70
134.98
A
A
A
O
C
N
GLY
GLY
SER
274
274
275
Y
1
22.49
2.50
121.70
144.19
A
A
A
C
N
CA
GLY
SER
SER
274
275
275
Y
1
4.29
0.50
120.30
124.59
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
299
299
299
N
1
3.55
0.50
120.30
123.85
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
326
326
326
N
1
-18.07
2.20
113.40
95.33
A
A
A
CA
CB
CG
ARG
ARG
ARG
328
328
328
N
1
-3.07
0.50
120.30
117.23
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
333
333
333
N
1
A
ILE
97
-76.82
47.06
1
A
ASN
98
-151.86
-41.10
1
A
GLU
117
-62.00
16.73
1
A
ASN
128
-140.56
32.45
1
A
ASP
170
-170.96
113.68
1
A
CYS
178
-90.52
-142.03
1
A
GLU
203
-105.83
42.54
1
A
LYS
206
-23.54
-52.62
1
A
GLU
244
37.30
33.89
1
A
ASN
245
-165.73
-147.39
1
A
ASP
246
-69.35
67.48
1
A
GLU
247
62.52
-17.53
1
A
ASN
248
51.74
171.94
1
A
GLU
249
-70.67
45.42
1
A
SER
275
120.38
121.50
1
A
THR
304
-166.21
-133.16
1
A
VAL
306
-67.47
91.53
1
A
ARG
333
-100.25
42.67
0.2200000
0.2200000
2.3
10.
12020
1
2.0
2.3
10.
59
2024
0
0
1965
0.021
3.5
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
2.3 ANGSTROMS CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF DNA POLYMERASE BETA
1
N
N
2
N
N
A
SER
96
A
SER
12
HELX_P
A
ARG
102
A
ARG
18
1
A
7
A
GLY
107
A
GLY
23
HELX_P
A
GLU
117
A
GLU
33
1
B
11
A
THR
121
A
THR
37
HELX_P
A
ASN
128
A
ASN
44
1
C
8
A
ASN
133
A
ASN
49
HELX_P
A
TYR
142
A
TYR
58
1
D
10
A
TYR
142
A
TYR
58
HELX_P
A
PHE
146
A
PHE
62
1
E
5
A
ARG
152
A
ARG
68
HELX_P
A
ASP
170
A
ASP
86
1
F
19
A
SER
180
A
SER
96
HELX_P
A
GLY
184
A
GLY
100
1
G
5
A
PRO
208
A
PRO
124
HELX_P
A
VAL
221
A
VAL
137
1
H
14
A
GLN
264
A
GLN
180
HELX_P
A
GLY
274
A
GLY
190
1
I
11
A
ASP
276
A
ASP
192
HELX_P
A
GLY
290
A
GLY
206
1
J
15
A
GLU
316
A
GLU
232
HELX_P
A
GLN
324
A
GLN
240
1
K
9
A
GLU
329
A
GLU
245
HELX_P
A
ARG
333
A
ARG
249
5
310
5
NUCLEOTIDYLTRANSFERASE
NUCLEOTIDYLTRANSFERASE
DPOB_RAT
UNP
1
1
P06766
SKRKAPQETLNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGK
LRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDI
VLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQL
PSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEQDIFD
YIQWRYREPKDRSE
84
334
1RPL
85
335
P06766
A
1
1
251
5
anti-parallel
parallel
anti-parallel
anti-parallel
A
ILE
174
A
ILE
90
A
CYS
178
A
CYS
94
A
MET
191
A
MET
107
A
THR
196
A
THR
112
A
ARG
253
A
ARG
169
A
ILE
260
A
ILE
176
A
THR
233
A
THR
149
A
CYS
239
A
CYS
155
A
ILE
224
A
ILE
140
A
GLY
231
A
GLY
147
18
P 21 21 2