0.008666
0.005003
0.000000
0.000000
0.010006
0.000000
0.000000
0.000000
0.007800
0.00000
0.00000
0.00000
Vargason, J.M.
Szittya, G.
Burgyan, J.
Hall, T.M.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
120.00
115.400
115.400
128.200
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
N
N
39
S
C
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
O
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
R
C
N
122
N
O
N
123
R
C
N
124
N
N
N
125
N
C
N
126
N
O
N
127
N
N
N
128
N
C
N
129
N
N
N
130
N
C
N
131
N
C
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
N
N
147
R
C
N
148
N
C
N
149
N
O
N
150
N
C
N
151
N
S
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
O
N
161
N
P
N
162
N
O
N
163
N
O
N
164
N
O
N
165
N
C
N
166
R
C
N
167
N
O
N
168
S
C
N
169
N
O
N
170
R
C
N
171
N
O
N
172
R
C
Y
173
N
N
Y
174
N
C
Y
175
N
N
Y
176
N
C
N
177
N
C
N
178
N
O
N
179
N
N
N
180
N
C
N
181
N
N
N
182
N
N
Y
183
N
C
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
N
N
199
S
C
N
200
N
C
N
201
N
O
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
N
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
N
N
219
S
C
N
220
N
C
N
221
N
O
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
O
N
226
N
O
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
N
Y
254
N
C
Y
255
N
C
Y
256
N
N
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
S
C
N
276
N
C
N
277
N
C
N
278
N
C
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
N
N
294
S
C
N
295
N
C
N
296
N
O
N
297
N
C
N
298
N
C
N
299
N
C
N
300
N
C
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
N
C
N
320
N
C
N
321
N
C
N
322
N
C
N
323
N
N
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
N
345
N
C
N
346
N
S
N
347
N
C
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
N
N
361
S
C
N
362
N
C
N
363
N
O
N
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
N
371
N
O
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
N
388
N
C
N
389
N
C
N
390
N
O
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
N
N
401
S
C
N
402
N
C
N
403
N
O
N
404
N
C
N
405
N
O
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
R
C
N
419
N
O
N
420
N
C
N
421
N
O
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
N
N
432
S
C
N
433
N
C
N
434
N
O
N
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
N
Y
440
N
C
Y
441
N
C
Y
442
N
C
Y
443
N
C
Y
444
N
C
N
445
N
O
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
N
N
459
S
C
N
460
N
C
N
461
N
O
N
462
N
C
Y
463
N
C
Y
464
N
C
Y
465
N
C
Y
466
N
C
Y
467
N
C
Y
468
N
C
N
469
N
O
N
470
N
O
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
O
N
483
N
P
N
484
N
O
N
485
N
O
N
486
N
O
N
487
N
C
N
488
R
C
N
489
N
O
N
490
S
C
N
491
N
O
N
492
R
C
N
493
N
O
N
494
R
C
N
495
N
N
N
496
N
C
N
497
N
O
N
498
N
N
N
499
N
C
N
500
N
O
N
501
N
C
N
502
N
C
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
N
N
517
S
C
N
518
N
C
N
519
N
O
N
520
N
C
N
521
N
C
N
522
N
C
N
523
N
O
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
Y
182
N
sing
Y
183
N
sing
Y
184
N
doub
N
185
N
sing
Y
186
N
sing
N
187
N
sing
Y
188
N
doub
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
Y
255
N
sing
Y
256
N
doub
Y
257
N
doub
N
258
N
sing
Y
259
N
sing
N
260
N
sing
Y
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
Y
363
N
doub
Y
364
N
sing
Y
365
N
sing
N
366
N
sing
Y
367
N
doub
N
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
doub
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
doub
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
Y
432
N
doub
Y
433
N
sing
Y
434
N
sing
N
435
N
sing
Y
436
N
doub
Y
437
N
sing
Y
438
N
sing
N
439
N
sing
Y
440
N
sing
Y
441
N
doub
N
442
N
sing
Y
443
N
doub
N
444
N
sing
Y
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
doub
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
Y
460
N
doub
Y
461
N
sing
Y
462
N
sing
N
463
N
sing
Y
464
N
doub
N
465
N
sing
Y
466
N
doub
N
467
N
sing
Y
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
doub
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
doub
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
doub
N
504
N
sing
N
505
N
doub
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
doub
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
115
799
811
10.1016/S0092-8674(03)00984-X
14697199
Size selective recognition of siRNA by an RNA silencing suppressor
2003
10.2210/pdb1rpu/pdb
pdb_00001rpu
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
93.0
1
CCD
2003-04-01
MARRESEARCH
Si 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
22-ID
APS
1.0000
SYNCHROTRON
APS BEAMLINE 22-ID
6680.997
5'-R(P*CP*GP*UP*AP*CP*GP*CP*GP*UP*CP*AP*CP*GP*CP*GP*UP*AP*CP*GP*UP*U)-3'
2
syn
polymer
19358.373
19 kDa protein
2
man
polymer
18.015
water
111
nat
water
no
no
CGUACGCGUCACGCGUACGUU
CGUACGCGUCACGCGUACGUU
C,D
polyribonucleotide
no
no
MERAIQGNDTREQANGERWDGGSGGITSPFKLPDESPSWTEWRLYNDETNSNQDNPLGFKESWGFGKVVFKRYLRYDRTE
ASLHRVLGSWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQLTPVEVESNVSRGC
PEGIETFKKESE
MERAIQGNDTREQANGERWDGGSGGITSPFKLPDESPSWTEWRLYNDETNSNQDNPLGFKESWGFGKVVFKRYLRYDRTE
ASLHRVLGSWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQLTPVEVESNVSRGC
PEGIETFKKESE
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Tombusvirus
Escherichia
Escherichia coli
sample
p19
39443
Carnation Italian ringspot virus
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
pGEX2T
1
2.37
48.00
VAPOR DIFFUSION, HANGING DROP
4.6
PEG MME 2000, ammonium sulfate, sodium acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
PEG MME 2000
1
ammonium sulfate
1
sodium acetate
1
H2O
1
PEG MME 2000
2
ammonium sulfate
2
sodium acetate
2
H2O
2
9.053
1
19
C
1
D
19
-0.156
C_C1:G19_D
1
-5.665
0.142
-0.537
-0.024
-8.524
1
19
C
2
D
18
4.751
C_G2:C18_D
2
-18.492
-0.209
-0.387
-0.059
1.806
1
20
C
3
D
17
4.317
C_U3:A17_D
3
-22.604
-0.033
-0.600
-0.071
-7.447
1
20
C
4
D
16
1.732
C_A4:U16_D
4
-14.505
0.157
-0.279
-0.011
8.326
1
19
C
5
D
15
1.497
C_C5:G15_D
5
-11.120
0.064
-0.237
-0.061
4.922
1
19
C
6
D
14
-0.084
C_G6:C14_D
6
-8.619
-0.191
0.250
-0.200
-2.029
1
19
C
7
D
13
-2.127
C_C7:G13_D
7
-6.325
0.120
-0.026
-0.082
-9.244
1
19
C
8
D
12
-0.112
C_G8:C12_D
8
-10.607
-0.064
-0.146
-0.016
-4.712
1
20
C
9
D
11
0.027
C_U9:A11_D
9
-7.037
-0.053
-0.064
-0.059
-0.573
C
10
D
10
-10.924
C_C10:C10_D
10
-5.768
3.160
0.303
-1.181
-5.288
1
20
C
11
D
9
6.337
C_A11:U9_D
11
-11.698
0.007
-0.319
-0.111
19.507
1
19
C
12
D
8
0.911
C_C12:G8_D
12
-21.594
0.131
-0.697
-0.026
4.841
1
19
C
13
D
7
0.221
C_G13:C7_D
13
-12.991
-0.259
0.108
-0.126
3.174
1
19
C
14
D
6
-0.055
C_C14:G6_D
14
-16.707
0.058
0.133
-0.033
-7.267
1
19
C
15
D
5
-2.691
C_G15:C5_D
15
-11.068
0.082
-0.185
-0.004
-0.028
1
20
C
16
D
4
-1.765
C_U16:A4_D
16
-16.574
-0.028
0.360
0.002
3.027
1
20
C
17
D
3
2.099
C_A17:U3_D
17
-6.905
-0.083
0.108
-0.046
1.915
1
19
C
18
D
2
2.483
C_C18:G2_D
18
-20.939
0.059
-0.230
-0.129
-9.977
1
19
C
19
D
1
1.956
C_G19:C1_D
19
-0.822
-0.096
-0.512
-0.083
2.650
32.661
C
C
1
2
24.910
D
D
19
18
3.855
13.571
-0.072
-2.100
CC_C1G2:C18G19_DD
1
-3.844
7.056
29.533
-6.200
-0.570
2.739
32.310
C
C
2
3
5.338
D
D
18
17
2.914
2.964
-0.297
-1.537
CC_G2U3:A17C18_DD
2
2.245
-4.042
32.101
-3.217
0.878
2.673
35.319
C
C
3
4
25.363
D
D
17
16
3.604
14.933
0.210
-1.485
CC_U3A4:U16A17_DD
3
0.039
-0.067
32.098
-4.676
-0.341
2.781
26.850
C
C
4
5
2.855
D
D
16
15
2.866
1.325
0.256
-1.789
CC_A4C5:G15U16_DD
4
0.600
-1.293
26.811
-4.147
-0.418
2.721
26.879
C
C
5
6
15.393
D
D
15
14
3.367
7.006
-0.475
-2.134
CC_C5G6:C14G15_DD
5
-6.438
14.146
25.167
-6.325
-0.572
2.629
38.192
C
C
6
7
18.059
D
D
14
13
3.352
11.637
-0.199
-1.904
CC_G6C7:G13C14_DD
6
1.866
-2.896
36.392
-4.287
0.525
2.935
31.869
C
C
7
8
14.449
D
D
13
12
3.370
7.780
0.898
-1.892
CC_C7G8:C12G13_DD
7
7.687
-14.275
29.980
-4.856
-0.242
3.027
28.607
C
C
8
9
6.792
D
D
12
11
3.135
3.340
1.226
-1.893
CC_G8U9:A11C12_DD
8
3.681
-7.486
28.181
-4.550
-1.690
2.978
39.966
C
C
9
10
8.727
D
D
11
10
3.174
5.939
-1.179
-1.713
CC_U9C10:C10A11_DD
9
-3.189
4.687
39.416
-3.153
1.378
2.724
26.225
C
C
10
11
17.724
D
D
10
9
3.359
7.749
1.157
-2.307
CC_C10A11:U9C10_DD
10
9.229
-21.108
23.335
-7.150
-0.091
2.832
26.919
C
C
11
12
-4.532
D
D
9
8
2.748
-2.108
-1.171
-1.521
CC_A11C12:G8U9_DD
11
0.563
-1.211
26.832
-2.805
2.638
2.292
34.843
C
C
12
13
29.712
D
D
8
7
3.622
16.931
-0.449
-1.892
CC_C12G13:C7G8_DD
12
-7.379
12.949
29.675
-5.689
-0.353
2.832
36.019
C
C
13
14
11.518
D
D
7
6
3.219
7.077
0.023
-1.711
CC_G13C14:G6C7_DD
13
-1.353
2.203
35.314
-3.706
-0.217
2.538
33.354
C
C
14
15
20.029
D
D
6
5
3.455
11.277
-0.269
-2.143
CC_C14G15:C5G6_DD
14
1.659
-2.947
31.398
-5.506
0.730
2.426
28.525
C
C
15
16
14.588
D
D
5
4
3.028
7.106
0.799
-1.765
CC_G15U16:A4C5_DD
15
-2.450
5.030
27.536
-4.958
-2.097
2.885
26.338
C
C
16
17
5.451
D
D
4
3
3.076
2.480
-0.550
-1.946
CC_U16A17:U3A4_DD
16
-0.128
0.282
26.223
-4.877
1.176
2.729
32.641
C
C
17
18
14.620
D
D
3
2
3.218
8.126
-0.015
-1.570
CC_A17C18:G2U3_DD
17
2.677
-4.817
31.530
-4.098
0.456
2.448
32.618
C
C
18
19
25.544
D
D
2
1
3.608
13.907
-0.090
-1.983
CC_C18G19:C1G2_DD
18
1.040
-1.910
29.560
-5.886
0.337
software
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
1
0
2004-01-13
1
1
2008-04-29
1
2
2011-07-13
1
3
2017-10-11
1
4
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2003-12-03
REL
REL
HOH
water
Synthesized by Dharmacon
sample
HOH
5
3
HOH
HOH
22
C
HOH
9
3
HOH
HOH
23
C
HOH
10
3
HOH
HOH
24
C
HOH
23
3
HOH
HOH
25
C
HOH
31
3
HOH
HOH
26
C
HOH
62
3
HOH
HOH
27
C
HOH
70
3
HOH
HOH
28
C
HOH
77
3
HOH
HOH
29
C
HOH
79
3
HOH
HOH
30
C
HOH
82
3
HOH
HOH
31
C
HOH
87
3
HOH
HOH
32
C
HOH
94
3
HOH
HOH
33
C
HOH
99
3
HOH
HOH
34
C
HOH
102
3
HOH
HOH
35
C
HOH
108
3
HOH
HOH
36
C
HOH
6
3
HOH
HOH
22
D
HOH
11
3
HOH
HOH
23
D
HOH
21
3
HOH
HOH
24
D
HOH
22
3
HOH
HOH
25
D
HOH
60
3
HOH
HOH
26
D
HOH
72
3
HOH
HOH
27
D
HOH
97
3
HOH
HOH
28
D
HOH
104
3
HOH
HOH
29
D
HOH
110
3
HOH
HOH
30
D
HOH
1
3
HOH
HOH
173
A
HOH
2
3
HOH
HOH
174
A
HOH
3
3
HOH
HOH
175
A
HOH
13
3
HOH
HOH
176
A
HOH
15
3
HOH
HOH
177
A
HOH
16
3
HOH
HOH
178
A
HOH
17
3
HOH
HOH
179
A
HOH
18
3
HOH
HOH
180
A
HOH
19
3
HOH
HOH
181
A
HOH
20
3
HOH
HOH
182
A
HOH
25
3
HOH
HOH
183
A
HOH
26
3
HOH
HOH
184
A
HOH
28
3
HOH
HOH
185
A
HOH
30
3
HOH
HOH
186
A
HOH
33
3
HOH
HOH
187
A
HOH
36
3
HOH
HOH
188
A
HOH
39
3
HOH
HOH
189
A
HOH
40
3
HOH
HOH
190
A
HOH
41
3
HOH
HOH
191
A
HOH
44
3
HOH
HOH
192
A
HOH
45
3
HOH
HOH
193
A
HOH
46
3
HOH
HOH
194
A
HOH
48
3
HOH
HOH
195
A
HOH
49
3
HOH
HOH
196
A
HOH
51
3
HOH
HOH
197
A
HOH
53
3
HOH
HOH
198
A
HOH
57
3
HOH
HOH
199
A
HOH
58
3
HOH
HOH
200
A
HOH
59
3
HOH
HOH
201
A
HOH
63
3
HOH
HOH
202
A
HOH
65
3
HOH
HOH
203
A
HOH
75
3
HOH
HOH
204
A
HOH
78
3
HOH
HOH
205
A
HOH
80
3
HOH
HOH
206
A
HOH
81
3
HOH
HOH
207
A
HOH
84
3
HOH
HOH
208
A
HOH
85
3
HOH
HOH
209
A
HOH
88
3
HOH
HOH
210
A
HOH
89
3
HOH
HOH
211
A
HOH
90
3
HOH
HOH
212
A
HOH
93
3
HOH
HOH
213
A
HOH
106
3
HOH
HOH
214
A
HOH
107
3
HOH
HOH
215
A
HOH
111
3
HOH
HOH
216
A
HOH
4
3
HOH
HOH
173
B
HOH
7
3
HOH
HOH
174
B
HOH
8
3
HOH
HOH
175
B
HOH
12
3
HOH
HOH
176
B
HOH
14
3
HOH
HOH
177
B
HOH
24
3
HOH
HOH
178
B
HOH
27
3
HOH
HOH
179
B
HOH
29
3
HOH
HOH
180
B
HOH
32
3
HOH
HOH
181
B
HOH
34
3
HOH
HOH
182
B
HOH
35
3
HOH
HOH
183
B
HOH
37
3
HOH
HOH
184
B
HOH
38
3
HOH
HOH
185
B
HOH
42
3
HOH
HOH
186
B
HOH
43
3
HOH
HOH
187
B
HOH
47
3
HOH
HOH
188
B
HOH
50
3
HOH
HOH
189
B
HOH
52
3
HOH
HOH
190
B
HOH
54
3
HOH
HOH
191
B
HOH
55
3
HOH
HOH
192
B
HOH
56
3
HOH
HOH
193
B
HOH
61
3
HOH
HOH
194
B
HOH
64
3
HOH
HOH
195
B
HOH
66
3
HOH
HOH
196
B
HOH
67
3
HOH
HOH
197
B
HOH
68
3
HOH
HOH
198
B
HOH
69
3
HOH
HOH
199
B
HOH
71
3
HOH
HOH
200
B
HOH
73
3
HOH
HOH
201
B
HOH
74
3
HOH
HOH
202
B
HOH
76
3
HOH
HOH
203
B
HOH
83
3
HOH
HOH
204
B
HOH
86
3
HOH
HOH
205
B
HOH
91
3
HOH
HOH
206
B
HOH
92
3
HOH
HOH
207
B
HOH
95
3
HOH
HOH
208
B
HOH
96
3
HOH
HOH
209
B
HOH
98
3
HOH
HOH
210
B
HOH
100
3
HOH
HOH
211
B
HOH
101
3
HOH
HOH
212
B
HOH
103
3
HOH
HOH
213
B
HOH
105
3
HOH
HOH
214
B
HOH
109
3
HOH
HOH
215
B
C
1
n
1
C
1
C
G
2
n
2
G
2
C
U
3
n
3
U
3
C
A
4
n
4
A
4
C
C
5
n
5
C
5
C
G
6
n
6
G
6
C
C
7
n
7
C
7
C
G
8
n
8
G
8
C
U
9
n
9
U
9
C
C
10
n
10
C
10
C
A
11
n
11
A
11
C
C
12
n
12
C
12
C
G
13
n
13
G
13
C
C
14
n
14
C
14
C
G
15
n
15
G
15
C
U
16
n
16
U
16
C
A
17
n
17
A
17
C
C
18
n
18
C
18
C
G
19
n
19
G
19
C
U
20
n
20
U
20
C
U
21
n
21
U
21
C
C
1
n
1
C
1
D
G
2
n
2
G
2
D
U
3
n
3
U
3
D
A
4
n
4
A
4
D
C
5
n
5
C
5
D
G
6
n
6
G
6
D
C
7
n
7
C
7
D
G
8
n
8
G
8
D
U
9
n
9
U
9
D
C
10
n
10
C
10
D
A
11
n
11
A
11
D
C
12
n
12
C
12
D
G
13
n
13
G
13
D
C
14
n
14
C
14
D
G
15
n
15
G
15
D
U
16
n
16
U
16
D
A
17
n
17
A
17
D
C
18
n
18
C
18
D
G
19
n
19
G
19
D
U
20
n
20
U
20
D
U
21
n
21
U
21
D
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
ASN
8
n
8
ASN
8
A
ASP
9
n
9
ASP
9
A
THR
10
n
10
THR
10
A
ARG
11
n
11
ARG
11
A
GLU
12
n
12
GLU
12
A
GLN
13
n
13
GLN
13
A
ALA
14
n
14
ALA
14
A
ASN
15
n
15
ASN
15
A
GLY
16
n
16
GLY
16
A
GLU
17
n
17
GLU
17
A
ARG
18
n
18
ARG
18
A
TRP
19
n
19
TRP
19
A
ASP
20
n
20
ASP
20
A
GLY
21
n
21
GLY
21
A
GLY
22
n
22
GLY
22
A
SER
23
n
23
SER
23
A
GLY
24
n
24
GLY
24
A
GLY
25
n
25
GLY
25
A
ILE
26
n
26
ILE
26
A
THR
27
n
27
THR
27
A
SER
28
n
28
SER
28
A
PRO
29
n
29
PRO
29
A
PHE
30
n
30
PHE
30
A
LYS
31
n
31
LYS
31
A
LEU
32
n
32
LEU
32
A
PRO
33
n
33
PRO
33
A
ASP
34
n
34
ASP
34
A
GLU
35
n
35
GLU
35
A
SER
36
n
36
SER
36
A
PRO
37
n
37
PRO
37
A
SER
38
n
38
SER
38
A
TRP
39
n
39
TRP
39
A
THR
40
n
40
THR
40
A
GLU
41
n
41
GLU
41
A
TRP
42
n
42
TRP
42
A
ARG
43
n
43
ARG
43
A
LEU
44
n
44
LEU
44
A
TYR
45
n
45
TYR
45
A
ASN
46
n
46
ASN
46
A
ASP
47
n
47
ASP
47
A
GLU
48
n
48
GLU
48
A
n
49
49
A
n
50
50
A
n
51
51
A
n
52
52
A
n
53
53
A
n
54
54
A
ASN
55
n
55
ASN
55
A
PRO
56
n
56
PRO
56
A
LEU
57
n
57
LEU
57
A
GLY
58
n
58
GLY
58
A
PHE
59
n
59
PHE
59
A
LYS
60
n
60
LYS
60
A
GLU
61
n
61
GLU
61
A
SER
62
n
62
SER
62
A
TRP
63
n
63
TRP
63
A
GLY
64
n
64
GLY
64
A
PHE
65
n
65
PHE
65
A
GLY
66
n
66
GLY
66
A
LYS
67
n
67
LYS
67
A
VAL
68
n
68
VAL
68
A
VAL
69
n
69
VAL
69
A
PHE
70
n
70
PHE
70
A
LYS
71
n
71
LYS
71
A
ARG
72
n
72
ARG
72
A
TYR
73
n
73
TYR
73
A
LEU
74
n
74
LEU
74
A
ARG
75
n
75
ARG
75
A
TYR
76
n
76
TYR
76
A
ASP
77
n
77
ASP
77
A
ARG
78
n
78
ARG
78
A
THR
79
n
79
THR
79
A
GLU
80
n
80
GLU
80
A
ALA
81
n
81
ALA
81
A
SER
82
n
82
SER
82
A
LEU
83
n
83
LEU
83
A
HIS
84
n
84
HIS
84
A
ARG
85
n
85
ARG
85
A
VAL
86
n
86
VAL
86
A
LEU
87
n
87
LEU
87
A
GLY
88
n
88
GLY
88
A
SER
89
n
89
SER
89
A
TRP
90
n
90
TRP
90
A
THR
91
n
91
THR
91
A
GLY
92
n
92
GLY
92
A
ASP
93
n
93
ASP
93
A
SER
94
n
94
SER
94
A
VAL
95
n
95
VAL
95
A
ASN
96
n
96
ASN
96
A
TYR
97
n
97
TYR
97
A
ALA
98
n
98
ALA
98
A
ALA
99
n
99
ALA
99
A
SER
100
n
100
SER
100
A
ARG
101
n
101
ARG
101
A
PHE
102
n
102
PHE
102
A
LEU
103
n
103
LEU
103
A
GLY
104
n
104
GLY
104
A
ALA
105
n
105
ALA
105
A
ASN
106
n
106
ASN
106
A
GLN
107
n
107
GLN
107
A
VAL
108
n
108
VAL
108
A
GLY
109
n
109
GLY
109
A
CYS
110
n
110
CYS
110
A
THR
111
n
111
THR
111
A
TYR
112
n
112
TYR
112
A
SER
113
n
113
SER
113
A
ILE
114
n
114
ILE
114
A
ARG
115
n
115
ARG
115
A
PHE
116
n
116
PHE
116
A
ARG
117
n
117
ARG
117
A
GLY
118
n
118
GLY
118
A
VAL
119
n
119
VAL
119
A
SER
120
n
120
SER
120
A
VAL
121
n
121
VAL
121
A
THR
122
n
122
THR
122
A
ILE
123
n
123
ILE
123
A
SER
124
n
124
SER
124
A
GLY
125
n
125
GLY
125
A
GLY
126
n
126
GLY
126
A
SER
127
n
127
SER
127
A
ARG
128
n
128
ARG
128
A
THR
129
n
129
THR
129
A
LEU
130
n
130
LEU
130
A
GLN
131
n
131
GLN
131
A
HIS
132
n
132
HIS
132
A
LEU
133
n
133
LEU
133
A
CYS
134
n
134
CYS
134
A
GLU
135
n
135
GLU
135
A
MET
136
n
136
MET
136
A
ALA
137
n
137
ALA
137
A
ILE
138
n
138
ILE
138
A
ARG
139
n
139
ARG
139
A
SER
140
n
140
SER
140
A
LYS
141
n
141
LYS
141
A
GLN
142
n
142
GLN
142
A
GLU
143
n
143
GLU
143
A
LEU
144
n
144
LEU
144
A
LEU
145
n
145
LEU
145
A
GLN
146
n
146
GLN
146
A
LEU
147
n
147
LEU
147
A
THR
148
n
148
THR
148
A
PRO
149
n
149
PRO
149
A
VAL
150
n
150
VAL
150
A
GLU
151
n
151
GLU
151
A
VAL
152
n
152
VAL
152
A
n
153
153
A
n
154
154
A
n
155
155
A
n
156
156
A
n
157
157
A
n
158
158
A
n
159
159
A
n
160
160
A
n
161
161
A
n
162
162
A
n
163
163
A
n
164
164
A
n
165
165
A
n
166
166
A
n
167
167
A
n
168
168
A
n
169
169
A
n
170
170
A
n
171
171
A
n
172
172
A
n
1
1
B
n
2
2
B
n
3
3
B
n
4
4
B
n
5
5
B
n
6
6
B
n
7
7
B
ASN
8
n
8
ASN
8
B
ASP
9
n
9
ASP
9
B
THR
10
n
10
THR
10
B
ARG
11
n
11
ARG
11
B
GLU
12
n
12
GLU
12
B
GLN
13
n
13
GLN
13
B
ALA
14
n
14
ALA
14
B
ASN
15
n
15
ASN
15
B
GLY
16
n
16
GLY
16
B
GLU
17
n
17
GLU
17
B
ARG
18
n
18
ARG
18
B
TRP
19
n
19
TRP
19
B
ASP
20
n
20
ASP
20
B
GLY
21
n
21
GLY
21
B
GLY
22
n
22
GLY
22
B
SER
23
n
23
SER
23
B
GLY
24
n
24
GLY
24
B
GLY
25
n
25
GLY
25
B
ILE
26
n
26
ILE
26
B
THR
27
n
27
THR
27
B
SER
28
n
28
SER
28
B
PRO
29
n
29
PRO
29
B
PHE
30
n
30
PHE
30
B
LYS
31
n
31
LYS
31
B
LEU
32
n
32
LEU
32
B
PRO
33
n
33
PRO
33
B
ASP
34
n
34
ASP
34
B
GLU
35
n
35
GLU
35
B
SER
36
n
36
SER
36
B
PRO
37
n
37
PRO
37
B
SER
38
n
38
SER
38
B
TRP
39
n
39
TRP
39
B
THR
40
n
40
THR
40
B
GLU
41
n
41
GLU
41
B
TRP
42
n
42
TRP
42
B
ARG
43
n
43
ARG
43
B
LEU
44
n
44
LEU
44
B
TYR
45
n
45
TYR
45
B
ASN
46
n
46
ASN
46
B
ASP
47
n
47
ASP
47
B
GLU
48
n
48
GLU
48
B
n
49
49
B
n
50
50
B
n
51
51
B
n
52
52
B
n
53
53
B
n
54
54
B
ASN
55
n
55
ASN
55
B
PRO
56
n
56
PRO
56
B
LEU
57
n
57
LEU
57
B
GLY
58
n
58
GLY
58
B
PHE
59
n
59
PHE
59
B
LYS
60
n
60
LYS
60
B
GLU
61
n
61
GLU
61
B
SER
62
n
62
SER
62
B
TRP
63
n
63
TRP
63
B
GLY
64
n
64
GLY
64
B
PHE
65
n
65
PHE
65
B
GLY
66
n
66
GLY
66
B
LYS
67
n
67
LYS
67
B
VAL
68
n
68
VAL
68
B
VAL
69
n
69
VAL
69
B
PHE
70
n
70
PHE
70
B
LYS
71
n
71
LYS
71
B
ARG
72
n
72
ARG
72
B
TYR
73
n
73
TYR
73
B
LEU
74
n
74
LEU
74
B
ARG
75
n
75
ARG
75
B
TYR
76
n
76
TYR
76
B
ASP
77
n
77
ASP
77
B
ARG
78
n
78
ARG
78
B
THR
79
n
79
THR
79
B
GLU
80
n
80
GLU
80
B
ALA
81
n
81
ALA
81
B
SER
82
n
82
SER
82
B
LEU
83
n
83
LEU
83
B
HIS
84
n
84
HIS
84
B
ARG
85
n
85
ARG
85
B
VAL
86
n
86
VAL
86
B
LEU
87
n
87
LEU
87
B
GLY
88
n
88
GLY
88
B
SER
89
n
89
SER
89
B
TRP
90
n
90
TRP
90
B
THR
91
n
91
THR
91
B
GLY
92
n
92
GLY
92
B
ASP
93
n
93
ASP
93
B
SER
94
n
94
SER
94
B
VAL
95
n
95
VAL
95
B
ASN
96
n
96
ASN
96
B
TYR
97
n
97
TYR
97
B
ALA
98
n
98
ALA
98
B
ALA
99
n
99
ALA
99
B
SER
100
n
100
SER
100
B
ARG
101
n
101
ARG
101
B
PHE
102
n
102
PHE
102
B
LEU
103
n
103
LEU
103
B
GLY
104
n
104
GLY
104
B
ALA
105
n
105
ALA
105
B
ASN
106
n
106
ASN
106
B
GLN
107
n
107
GLN
107
B
VAL
108
n
108
VAL
108
B
GLY
109
n
109
GLY
109
B
CYS
110
n
110
CYS
110
B
THR
111
n
111
THR
111
B
TYR
112
n
112
TYR
112
B
SER
113
n
113
SER
113
B
ILE
114
n
114
ILE
114
B
ARG
115
n
115
ARG
115
B
PHE
116
n
116
PHE
116
B
ARG
117
n
117
ARG
117
B
GLY
118
n
118
GLY
118
B
VAL
119
n
119
VAL
119
B
SER
120
n
120
SER
120
B
VAL
121
n
121
VAL
121
B
THR
122
n
122
THR
122
B
ILE
123
n
123
ILE
123
B
SER
124
n
124
SER
124
B
GLY
125
n
125
GLY
125
B
GLY
126
n
126
GLY
126
B
SER
127
n
127
SER
127
B
ARG
128
n
128
ARG
128
B
THR
129
n
129
THR
129
B
LEU
130
n
130
LEU
130
B
GLN
131
n
131
GLN
131
B
HIS
132
n
132
HIS
132
B
LEU
133
n
133
LEU
133
B
CYS
134
n
134
CYS
134
B
GLU
135
n
135
GLU
135
B
MET
136
n
136
MET
136
B
ALA
137
n
137
ALA
137
B
ILE
138
n
138
ILE
138
B
ARG
139
n
139
ARG
139
B
SER
140
n
140
SER
140
B
LYS
141
n
141
LYS
141
B
GLN
142
n
142
GLN
142
B
GLU
143
n
143
GLU
143
B
LEU
144
n
144
LEU
144
B
LEU
145
n
145
LEU
145
B
GLN
146
n
146
GLN
146
B
LEU
147
n
147
LEU
147
B
THR
148
n
148
THR
148
B
PRO
149
n
149
PRO
149
B
n
150
150
B
n
151
151
B
n
152
152
B
n
153
153
B
n
154
154
B
n
155
155
B
n
156
156
B
n
157
157
B
n
158
158
B
n
159
159
B
n
160
160
B
n
161
161
B
n
162
162
B
n
163
163
B
n
164
164
B
n
165
165
B
n
166
166
B
n
167
167
B
n
168
168
B
n
169
169
B
n
170
170
B
n
171
171
B
n
172
172
B
author_defined_assembly
4
tetrameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
PHE
70
C
O
PHE
70
A
N
TRP
63
C
N
TRP
63
A
N
GLY
64
C
N
GLY
64
A
O
THR
111
C
O
THR
111
A
N
TYR
112
C
N
TYR
112
A
O
ILE
123
C
O
ILE
123
A
N
SER
124
C
N
SER
124
B
O
SER
120
D
O
SER
120
B
O
ILE
123
D
O
ILE
123
B
N
TYR
112
D
N
TYR
112
B
O
THR
111
D
O
THR
111
B
N
GLY
64
D
N
GLY
64
B
N
TRP
63
D
N
TRP
63
B
O
PHE
70
D
O
PHE
70
1
A
N
ASN
8
C
N
ASN
8
1
Y
1
A
CA
ASN
8
C
CA
ASN
8
1
Y
1
A
CB
ASN
8
C
CB
ASN
8
1
Y
1
A
CG
ASN
8
C
CG
ASN
8
1
Y
1
A
OD1
ASN
8
C
OD1
ASN
8
1
Y
1
A
ND2
ASN
8
C
ND2
ASN
8
1
Y
1
A
CG
ARG
128
C
CG
ARG
128
1
Y
1
A
CD
ARG
128
C
CD
ARG
128
1
Y
1
A
NE
ARG
128
C
NE
ARG
128
1
Y
1
A
CZ
ARG
128
C
CZ
ARG
128
1
Y
1
A
NH1
ARG
128
C
NH1
ARG
128
1
Y
1
A
NH2
ARG
128
C
NH2
ARG
128
1
Y
1
B
N
ASN
8
D
N
ASN
8
1
Y
1
B
CB
ASN
8
D
CB
ASN
8
1
Y
1
B
CG
ASN
8
D
CG
ASN
8
1
Y
1
B
OD1
ASN
8
D
OD1
ASN
8
1
Y
1
B
ND2
ASN
8
D
ND2
ASN
8
1
Y
1
B
NE
ARG
101
D
NE
ARG
101
1
Y
1
B
CZ
ARG
101
D
CZ
ARG
101
1
Y
1
B
NH1
ARG
101
D
NH1
ARG
101
1
Y
1
B
NH2
ARG
101
D
NH2
ARG
101
1
Y
1
B
CG
ARG
128
D
CG
ARG
128
1
Y
1
B
CD
ARG
128
D
CD
ARG
128
1
Y
1
B
NE
ARG
128
D
NE
ARG
128
1
Y
1
B
CZ
ARG
128
D
CZ
ARG
128
1
Y
1
B
NH1
ARG
128
D
NH1
ARG
128
1
Y
1
B
NH2
ARG
128
D
NH2
ARG
128
1
Y
1
A
MET
1
C
MET
1
1
Y
1
A
GLU
2
C
GLU
2
1
Y
1
A
ARG
3
C
ARG
3
1
Y
1
A
ALA
4
C
ALA
4
1
Y
1
A
ILE
5
C
ILE
5
1
Y
1
A
GLN
6
C
GLN
6
1
Y
1
A
GLY
7
C
GLY
7
1
Y
1
A
THR
49
C
THR
49
1
Y
1
A
ASN
50
C
ASN
50
1
Y
1
A
SER
51
C
SER
51
1
Y
1
A
ASN
52
C
ASN
52
1
Y
1
A
GLN
53
C
GLN
53
1
Y
1
A
ASP
54
C
ASP
54
1
Y
1
A
GLU
153
C
GLU
153
1
Y
1
A
SER
154
C
SER
154
1
Y
1
A
ASN
155
C
ASN
155
1
Y
1
A
VAL
156
C
VAL
156
1
Y
1
A
SER
157
C
SER
157
1
Y
1
A
ARG
158
C
ARG
158
1
Y
1
A
GLY
159
C
GLY
159
1
Y
1
A
CYS
160
C
CYS
160
1
Y
1
A
PRO
161
C
PRO
161
1
Y
1
A
GLU
162
C
GLU
162
1
Y
1
A
GLY
163
C
GLY
163
1
Y
1
A
ILE
164
C
ILE
164
1
Y
1
A
GLU
165
C
GLU
165
1
Y
1
A
THR
166
C
THR
166
1
Y
1
A
PHE
167
C
PHE
167
1
Y
1
A
LYS
168
C
LYS
168
1
Y
1
A
LYS
169
C
LYS
169
1
Y
1
A
GLU
170
C
GLU
170
1
Y
1
A
SER
171
C
SER
171
1
Y
1
A
GLU
172
C
GLU
172
1
Y
1
B
MET
1
D
MET
1
1
Y
1
B
GLU
2
D
GLU
2
1
Y
1
B
ARG
3
D
ARG
3
1
Y
1
B
ALA
4
D
ALA
4
1
Y
1
B
ILE
5
D
ILE
5
1
Y
1
B
GLN
6
D
GLN
6
1
Y
1
B
GLY
7
D
GLY
7
1
Y
1
B
THR
49
D
THR
49
1
Y
1
B
ASN
50
D
ASN
50
1
Y
1
B
SER
51
D
SER
51
1
Y
1
B
ASN
52
D
ASN
52
1
Y
1
B
GLN
53
D
GLN
53
1
Y
1
B
ASP
54
D
ASP
54
1
Y
1
B
VAL
150
D
VAL
150
1
Y
1
B
GLU
151
D
GLU
151
1
Y
1
B
VAL
152
D
VAL
152
1
Y
1
B
GLU
153
D
GLU
153
1
Y
1
B
SER
154
D
SER
154
1
Y
1
B
ASN
155
D
ASN
155
1
Y
1
B
VAL
156
D
VAL
156
1
Y
1
B
SER
157
D
SER
157
1
Y
1
B
ARG
158
D
ARG
158
1
Y
1
B
GLY
159
D
GLY
159
1
Y
1
B
CYS
160
D
CYS
160
1
Y
1
B
PRO
161
D
PRO
161
1
Y
1
B
GLU
162
D
GLU
162
1
Y
1
B
GLY
163
D
GLY
163
1
Y
1
B
ILE
164
D
ILE
164
1
Y
1
B
GLU
165
D
GLU
165
1
Y
1
B
THR
166
D
THR
166
1
Y
1
B
PHE
167
D
PHE
167
1
Y
1
B
LYS
168
D
LYS
168
1
Y
1
B
LYS
169
D
LYS
169
1
Y
1
B
GLU
170
D
GLU
170
1
Y
1
B
SER
171
D
SER
171
1
Y
1
B
GLU
172
D
GLU
172
1
Y
1
C
U
9
A
0.080
SIDE CHAIN
1
11.05
1.50
119.30
130.35
A
A
A
C
N
CA
ASN
PRO
PRO
55
56
56
Y
1
C
C
P
OP3
C
C
1
1
-0.089
0.012
1.607
1.518
A
A
N
1
C
C
P
OP3
C
C
1
1
-0.086
0.012
1.607
1.521
B
B
N
1
D
D
P
OP3
C
C
1
1
-0.088
0.012
1.607
1.519
A
A
N
1
D
D
P
OP3
C
C
1
1
-0.085
0.012
1.607
1.522
B
B
N
1
A
SER
23
-57.33
-177.68
1
A
TRP
42
-67.71
-73.06
1
A
ASP
47
-145.58
-21.27
1
A
THR
148
-8.84
117.37
1
A
PRO
149
-38.73
142.75
1
B
SER
23
62.02
141.08
1
B
GLU
35
-143.92
27.22
1
B
ASN
46
-78.09
34.41
1
B
ASP
47
-143.35
-13.16
1
B
ARG
78
82.78
36.43
1
B
SER
89
-48.52
-19.98
1
B
ARG
101
-66.13
8.41
1
B
PHE
102
-144.50
-9.60
1
B
LEU
103
-26.43
-58.61
1
B
ALA
105
64.15
-16.93
1
B
SER
127
-39.08
-35.72
0.289
0.224
0.24
0.24
2.5
50.0
862
17767
17767
RANDOM
1
THROUGHOUT
0.0
SAD
Engh & Huber
2.5
50.0
111
4055
0
1780
2164
0.006
1.18
2.5
50.0
1RPU
17767
17767
0
0
0.087
1
98.6
2.5
2.59
0.381
95.4
data collection
MAR345
data scaling
SCALEPACK
phasing
SHARP
refinement
CNS
1.1
Crystal Structure of CIRV p19 bound to siRNA
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
A
ASP
9
C
ASP
9
HELX_P
A
ARG
18
C
ARG
18
1
1
10
A
SER
38
C
SER
38
HELX_P
A
ASN
46
C
ASN
46
1
2
9
A
THR
79
C
THR
79
HELX_P
A
LEU
87
C
LEU
87
1
3
9
A
GLY
88
C
GLY
88
HELX_P
A
TRP
90
C
TRP
90
5
4
3
A
THR
91
C
THR
91
HELX_P
A
ARG
101
C
ARG
101
1
5
11
A
THR
129
C
THR
129
HELX_P
A
GLN
146
C
GLN
146
1
6
18
B
ASN
8
D
ASN
8
HELX_P
B
ARG
18
D
ARG
18
1
7
11
B
SER
38
D
SER
38
HELX_P
B
ASN
46
D
ASN
46
1
8
9
B
THR
79
D
THR
79
HELX_P
B
LEU
87
D
LEU
87
1
9
9
B
THR
91
D
THR
91
HELX_P
B
ARG
101
D
ARG
101
1
10
11
B
THR
129
D
THR
129
HELX_P
B
LEU
145
D
LEU
145
1
11
17
hydrog
WATSON-CRICK
A
A
C
C
1
A
N3
C
1
1_555
D
G
19
B
N1
G
19
1_555
hydrog
WATSON-CRICK
A
A
C
C
1
A
N4
C
1
1_555
D
G
19
B
O6
G
19
1_555
hydrog
WATSON-CRICK
A
A
C
C
1
A
O2
C
1
1_555
D
G
19
B
N2
G
19
1_555
hydrog
WATSON-CRICK
A
A
C
G
2
A
N1
G
2
1_555
D
C
18
B
N3
C
18
1_555
hydrog
WATSON-CRICK
A
A
C
G
2
A
N2
G
2
1_555
D
C
18
B
O2
C
18
1_555
hydrog
WATSON-CRICK
A
A
C
G
2
A
O6
G
2
1_555
D
C
18
B
N4
C
18
1_555
hydrog
WATSON-CRICK
A
A
C
U
3
A
N3
U
3
1_555
D
A
17
B
N1
A
17
1_555
hydrog
WATSON-CRICK
A
A
C
U
3
A
O4
U
3
1_555
D
A
17
B
N6
A
17
1_555
hydrog
WATSON-CRICK
A
A
C
A
4
A
N1
A
4
1_555
D
U
16
B
N3
U
16
1_555
hydrog
WATSON-CRICK
A
A
C
A
4
A
N6
A
4
1_555
D
U
16
B
O4
U
16
1_555
hydrog
WATSON-CRICK
A
A
C
C
5
A
N3
C
5
1_555
D
G
15
B
N1
G
15
1_555
hydrog
WATSON-CRICK
A
A
C
C
5
A
N4
C
5
1_555
D
G
15
B
O6
G
15
1_555
hydrog
WATSON-CRICK
A
A
C
C
5
A
O2
C
5
1_555
D
G
15
B
N2
G
15
1_555
hydrog
WATSON-CRICK
A
A
C
G
6
A
N1
G
6
1_555
D
C
14
B
N3
C
14
1_555
hydrog
WATSON-CRICK
A
A
C
G
6
A
N2
G
6
1_555
D
C
14
B
O2
C
14
1_555
hydrog
WATSON-CRICK
A
A
C
G
6
A
O6
G
6
1_555
D
C
14
B
N4
C
14
1_555
hydrog
WATSON-CRICK
A
A
C
C
7
A
N3
C
7
1_555
D
G
13
B
N1
G
13
1_555
hydrog
WATSON-CRICK
A
A
C
C
7
A
N4
C
7
1_555
D
G
13
B
O6
G
13
1_555
hydrog
WATSON-CRICK
A
A
C
C
7
A
O2
C
7
1_555
D
G
13
B
N2
G
13
1_555
hydrog
WATSON-CRICK
A
A
C
G
8
A
N1
G
8
1_555
D
C
12
B
N3
C
12
1_555
hydrog
WATSON-CRICK
A
A
C
G
8
A
N2
G
8
1_555
D
C
12
B
O2
C
12
1_555
hydrog
WATSON-CRICK
A
A
C
G
8
A
O6
G
8
1_555
D
C
12
B
N4
C
12
1_555
hydrog
WATSON-CRICK
A
A
C
U
9
A
N3
U
9
1_555
D
A
11
B
N1
A
11
1_555
hydrog
WATSON-CRICK
A
A
C
U
9
A
O4
U
9
1_555
D
A
11
B
N6
A
11
1_555
hydrog
C-C MISPAIR
A
A
C
C
10
A
N3
C
10
1_555
D
C
10
B
N4
C
10
1_555
hydrog
WATSON-CRICK
A
A
C
A
11
A
N1
A
11
1_555
D
U
9
B
N3
U
9
1_555
hydrog
WATSON-CRICK
A
A
C
A
11
A
N6
A
11
1_555
D
U
9
B
O4
U
9
1_555
hydrog
WATSON-CRICK
A
A
C
C
12
A
N3
C
12
1_555
D
G
8
B
N1
G
8
1_555
hydrog
WATSON-CRICK
A
A
C
C
12
A
N4
C
12
1_555
D
G
8
B
O6
G
8
1_555
hydrog
WATSON-CRICK
A
A
C
C
12
A
O2
C
12
1_555
D
G
8
B
N2
G
8
1_555
hydrog
WATSON-CRICK
A
A
C
G
13
A
N1
G
13
1_555
D
C
7
B
N3
C
7
1_555
hydrog
WATSON-CRICK
A
A
C
G
13
A
N2
G
13
1_555
D
C
7
B
O2
C
7
1_555
hydrog
WATSON-CRICK
A
A
C
G
13
A
O6
G
13
1_555
D
C
7
B
N4
C
7
1_555
hydrog
WATSON-CRICK
A
A
C
C
14
A
N3
C
14
1_555
D
G
6
B
N1
G
6
1_555
hydrog
WATSON-CRICK
A
A
C
C
14
A
N4
C
14
1_555
D
G
6
B
O6
G
6
1_555
hydrog
WATSON-CRICK
A
A
C
C
14
A
O2
C
14
1_555
D
G
6
B
N2
G
6
1_555
hydrog
WATSON-CRICK
A
A
C
G
15
A
N1
G
15
1_555
D
C
5
B
N3
C
5
1_555
hydrog
WATSON-CRICK
A
A
C
G
15
A
N2
G
15
1_555
D
C
5
B
O2
C
5
1_555
hydrog
WATSON-CRICK
A
A
C
G
15
A
O6
G
15
1_555
D
C
5
B
N4
C
5
1_555
hydrog
WATSON-CRICK
A
A
C
U
16
A
N3
U
16
1_555
D
A
4
B
N1
A
4
1_555
hydrog
WATSON-CRICK
A
A
C
U
16
A
O4
U
16
1_555
D
A
4
B
N6
A
4
1_555
hydrog
WATSON-CRICK
A
A
C
A
17
A
N1
A
17
1_555
D
U
3
B
N3
U
3
1_555
hydrog
WATSON-CRICK
A
A
C
A
17
A
N6
A
17
1_555
D
U
3
B
O4
U
3
1_555
hydrog
WATSON-CRICK
A
A
C
C
18
A
N3
C
18
1_555
D
G
2
B
N1
G
2
1_555
hydrog
WATSON-CRICK
A
A
C
C
18
A
N4
C
18
1_555
D
G
2
B
O6
G
2
1_555
hydrog
WATSON-CRICK
A
A
C
C
18
A
O2
C
18
1_555
D
G
2
B
N2
G
2
1_555
hydrog
WATSON-CRICK
A
A
C
G
19
A
N1
G
19
1_555
D
C
1
B
N3
C
1
1_555
hydrog
WATSON-CRICK
A
A
C
G
19
A
N2
G
19
1_555
D
C
1
B
O2
C
1
1_555
hydrog
WATSON-CRICK
A
A
C
G
19
A
O6
G
19
1_555
D
C
1
B
N4
C
1
1_555
RNA Binding Protein/RNA
RNAi, PROTEIN-RNA COMPLEX, RNA DOUBLE HELIX, RNA LENGTH RECOGNITION, RNA Binding Protein-RNA COMPLEX
VP19_CIRV
UNP
2
1
Q66104
MERAIQGNDTREQANGERWDGGSGGITSPFKLPDESPSWTEWRLYNDETNSNQDNPLGFKESWGFGKVVFKRYLRYDRTE
ASLHRVLGSWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQLTPVEVESNVSRGC
PEGIETFKKESE
1RPU
PDB
1
1RPU
1
172
1RPU
1
172
Q66104
A
1
1
172
1
172
1RPU
1
172
Q66104
B
1
1
172
1
21
1RPU
1
21
1RPU
C
2
1
21
1
21
1RPU
1
21
1RPU
D
2
1
21
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
68
C
VAL
68
A
ARG
75
C
ARG
75
A
GLY
58
C
GLY
58
A
PHE
65
C
PHE
65
A
GLY
109
C
GLY
109
A
PHE
116
C
PHE
116
A
VAL
119
C
VAL
119
A
GLY
126
C
GLY
126
B
VAL
119
D
VAL
119
B
GLY
126
D
GLY
126
B
GLY
109
D
GLY
109
B
PHE
116
D
PHE
116
B
GLY
58
D
GLY
58
B
PHE
65
D
PHE
65
B
VAL
68
D
VAL
68
B
ARG
75
D
ARG
75
178
P 61 2 2