0.004463 0.002577 0.000000 0.000000 0.005153 0.000000 0.000000 0.000000 0.013211 0.00000 0.00000 0.00000 Skarzynski, T. Somers, D.O.N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 36 90.00 90.00 120.00 224.082 224.082 75.694 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C24 H38 N4 O4 446.583 N-[(2R,3S)-1-((2S)-2-{[(CYCLOPENTYLAMINO)CARBONYL]AMINO}-3-METHYLBUTANOYL)-2-(1-FORMYL-1-CYCLOBUTYL)PYRROLIDINYL]CYCLOPROPANECARBOXAMIDE non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer US Org.Lett. 1523-7060 5 4627 4630 10.1021/ol035826v 14627400 Pyrrolidine-5,5-trans-lactams. 4. Incorporation of a P3/P4 urea leads to potent intracellular inhibitors of hepatitis C virus NS3/4A protease 2003 US Org.Lett. 1523-7060 4 4479 4482 10.1021/ol027014p Pyrrolidine-5,5-Trans-Lactams. 2. The Use of X-Ray Crystal Structure Data in the Optimisation of P3 and P4 Substituents 2002 10.2210/pdb1rtl/pdb pdb_00001rtl 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 MIRRORS CCD MARRESEARCH OSMIC MIRRORS SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU MICROMAX-007 21263.250 NS3 protease/helicase Protease domain 2 man polymer 2394.039 NS4A COFACTOR Residues 21-39 2 syn polymer 65.409 ZINC ION 2 syn non-polymer 446.583 N-[(2R,3S)-1-((2S)-2-{[(CYCLOPENTYLAMINO)CARBONYL]AMINO}-3-METHYLBUTANOYL)-2-(1-FORMYL-1-CYCLOBUTYL)PYRROLIDINYL]CYCLOPROPANECARBOXAMIDE 1 syn non-polymer 18.015 water 102 nat water no no MASMTGGQQMGAPITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTATQTFLATCINGVCWTVYHGAGTRTIASPKG PVIQMYTNVDQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGH AVGLFRAAVCTRGVTKAVDFIPVENLETTMRSGSHHHHHH MASMTGGQQMGAPITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTATQTFLATCINGVCWTVYHGAGTRTIASPKG PVIQMYTNVDQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGH AVGLFRAAVCTRGVTKAVDFIPVENLETTMRSGSHHHHHH A,B polypeptide(L) no no KKGSVVIVGRIVLSGKPAIIPKK KKGSVVIVGRIVLSGKPAIIPKK C,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Hepacivirus Escherichia sample H STRAIN 11103 Hepatitis C virus 562 Escherichia coli PLASMID 1 3.86 68.17 6.5 15mM MES, 0.5M NaCl, 20mM bME, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 database_2 struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2004-12-14 1 1 2008-04-29 1 2 2011-07-13 1 3 2021-10-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Crystal Structure Of Hcv Ns3 Protease Domain: Ns4A Peptide Complex With Covalently Bound Inhibitor (Gw472467X) RCSB Y RCSB 2003-12-10 REL REL ZN ZINC ION CPX N-[(2R,3S)-1-((2S)-2-{[(CYCLOPENTYLAMINO)CARBONYL]AMINO}-3-METHYLBUTANOYL)-2-(1-FORMYL-1-CYCLOBUTYL)PYRROLIDINYL]CYCLOPROPANECARBOXAMIDE HOH water THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OF THE PROTEIN IS NATURALLY FOUND IN HEPATITIS C VIRUS TYPE 1B. sample ZN 301 3 ZN ZN 301 A CPX 201 4 CPX CPX 201 A ZN 301 3 ZN ZN 301 B HOH 2 5 HOH HOH 302 A HOH 4 5 HOH HOH 303 A HOH 5 5 HOH HOH 304 A HOH 6 5 HOH HOH 305 A HOH 7 5 HOH HOH 306 A HOH 8 5 HOH HOH 307 A HOH 9 5 HOH HOH 308 A HOH 11 5 HOH HOH 309 A HOH 12 5 HOH HOH 310 A HOH 13 5 HOH HOH 311 A HOH 14 5 HOH HOH 312 A HOH 15 5 HOH HOH 313 A HOH 16 5 HOH HOH 314 A HOH 17 5 HOH HOH 315 A HOH 18 5 HOH HOH 316 A HOH 20 5 HOH HOH 317 A HOH 22 5 HOH HOH 318 A HOH 23 5 HOH HOH 319 A HOH 24 5 HOH HOH 320 A HOH 25 5 HOH HOH 321 A HOH 26 5 HOH HOH 322 A HOH 27 5 HOH HOH 323 A HOH 28 5 HOH HOH 324 A HOH 29 5 HOH HOH 325 A HOH 30 5 HOH HOH 326 A HOH 31 5 HOH HOH 327 A HOH 32 5 HOH HOH 328 A HOH 33 5 HOH HOH 329 A HOH 34 5 HOH HOH 330 A HOH 35 5 HOH HOH 331 A HOH 36 5 HOH HOH 332 A HOH 37 5 HOH HOH 333 A HOH 38 5 HOH HOH 334 A HOH 39 5 HOH HOH 335 A HOH 82 5 HOH HOH 336 A HOH 83 5 HOH HOH 337 A HOH 84 5 HOH HOH 338 A HOH 85 5 HOH HOH 339 A HOH 86 5 HOH HOH 340 A HOH 87 5 HOH HOH 341 A HOH 88 5 HOH HOH 342 A HOH 89 5 HOH HOH 343 A HOH 90 5 HOH HOH 344 A HOH 91 5 HOH HOH 345 A HOH 92 5 HOH HOH 346 A HOH 93 5 HOH HOH 347 A HOH 94 5 HOH HOH 348 A HOH 95 5 HOH HOH 349 A HOH 102 5 HOH HOH 350 A HOH 40 5 HOH HOH 302 B HOH 41 5 HOH HOH 303 B HOH 43 5 HOH HOH 304 B HOH 44 5 HOH HOH 305 B HOH 46 5 HOH HOH 306 B HOH 47 5 HOH HOH 307 B HOH 48 5 HOH HOH 308 B HOH 50 5 HOH HOH 309 B HOH 52 5 HOH HOH 310 B HOH 53 5 HOH HOH 311 B HOH 55 5 HOH HOH 312 B HOH 56 5 HOH HOH 313 B HOH 57 5 HOH HOH 314 B HOH 60 5 HOH HOH 315 B HOH 61 5 HOH HOH 316 B HOH 62 5 HOH HOH 317 B HOH 63 5 HOH HOH 318 B HOH 64 5 HOH HOH 319 B HOH 67 5 HOH HOH 320 B HOH 68 5 HOH HOH 321 B HOH 70 5 HOH HOH 322 B HOH 71 5 HOH HOH 323 B HOH 72 5 HOH HOH 324 B HOH 73 5 HOH HOH 325 B HOH 74 5 HOH HOH 326 B HOH 75 5 HOH HOH 327 B HOH 76 5 HOH HOH 328 B HOH 77 5 HOH HOH 329 B HOH 78 5 HOH HOH 330 B HOH 79 5 HOH HOH 331 B HOH 96 5 HOH HOH 332 B HOH 97 5 HOH HOH 333 B HOH 98 5 HOH HOH 334 B HOH 99 5 HOH HOH 335 B HOH 100 5 HOH HOH 336 B HOH 101 5 HOH HOH 337 B HOH 1 5 HOH HOH 42 C HOH 3 5 HOH HOH 43 C HOH 10 5 HOH HOH 44 C HOH 19 5 HOH HOH 45 C HOH 21 5 HOH HOH 46 C HOH 42 5 HOH HOH 42 D HOH 45 5 HOH HOH 45 D HOH 49 5 HOH HOH 49 D HOH 51 5 HOH HOH 51 D HOH 54 5 HOH HOH 54 D HOH 58 5 HOH HOH 58 D HOH 59 5 HOH HOH 59 D HOH 65 5 HOH HOH 65 D HOH 66 5 HOH HOH 66 D HOH 69 5 HOH HOH 69 D HOH 80 5 HOH HOH 80 D HOH 81 5 HOH HOH 81 D n 1 -10 A n 2 -9 A n 3 -8 A n 4 -7 A n 5 -6 A n 6 -5 A n 7 -4 A n 8 -3 A n 9 -2 A n 10 -1 A n 11 0 A ALA 1 n 12 ALA 1 A PRO 2 n 13 PRO 2 A ILE 3 n 14 ILE 3 A THR 4 n 15 THR 4 A ALA 5 n 16 ALA 5 A TYR 6 n 17 TYR 6 A ALA 7 n 18 ALA 7 A GLN 8 n 19 GLN 8 A GLN 9 n 20 GLN 9 A THR 10 n 21 THR 10 A ARG 11 n 22 ARG 11 A GLY 12 n 23 GLY 12 A LEU 13 n 24 LEU 13 A LEU 14 n 25 LEU 14 A GLY 15 n 26 GLY 15 A CYS 16 n 27 CYS 16 A ILE 17 n 28 ILE 17 A ILE 18 n 29 ILE 18 A THR 19 n 30 THR 19 A SER 20 n 31 SER 20 A LEU 21 n 32 LEU 21 A THR 22 n 33 THR 22 A GLY 23 n 34 GLY 23 A ARG 24 n 35 ARG 24 A ASP 25 n 36 ASP 25 A LYS 26 n 37 LYS 26 A ASN 27 n 38 ASN 27 A GLN 28 n 39 GLN 28 A VAL 29 n 40 VAL 29 A GLU 30 n 41 GLU 30 A GLY 31 n 42 GLY 31 A GLU 32 n 43 GLU 32 A VAL 33 n 44 VAL 33 A GLN 34 n 45 GLN 34 A ILE 35 n 46 ILE 35 A VAL 36 n 47 VAL 36 A SER 37 n 48 SER 37 A THR 38 n 49 THR 38 A ALA 39 n 50 ALA 39 A THR 40 n 51 THR 40 A GLN 41 n 52 GLN 41 A THR 42 n 53 THR 42 A PHE 43 n 54 PHE 43 A LEU 44 n 55 LEU 44 A ALA 45 n 56 ALA 45 A THR 46 n 57 THR 46 A CYS 47 n 58 CYS 47 A ILE 48 n 59 ILE 48 A ASN 49 n 60 ASN 49 A GLY 50 n 61 GLY 50 A VAL 51 n 62 VAL 51 A CYS 52 n 63 CYS 52 A TRP 53 n 64 TRP 53 A THR 54 n 65 THR 54 A VAL 55 n 66 VAL 55 A TYR 56 n 67 TYR 56 A HIS 57 n 68 HIS 57 A GLY 58 n 69 GLY 58 A ALA 59 n 70 ALA 59 A GLY 60 n 71 GLY 60 A THR 61 n 72 THR 61 A ARG 62 n 73 ARG 62 A THR 63 n 74 THR 63 A ILE 64 n 75 ILE 64 A ALA 65 n 76 ALA 65 A SER 66 n 77 SER 66 A PRO 67 n 78 PRO 67 A LYS 68 n 79 LYS 68 A GLY 69 n 80 GLY 69 A PRO 70 n 81 PRO 70 A VAL 71 n 82 VAL 71 A ILE 72 n 83 ILE 72 A GLN 73 n 84 GLN 73 A MET 74 n 85 MET 74 A TYR 75 n 86 TYR 75 A THR 76 n 87 THR 76 A ASN 77 n 88 ASN 77 A VAL 78 n 89 VAL 78 A ASP 79 n 90 ASP 79 A GLN 80 n 91 GLN 80 A ASP 81 n 92 ASP 81 A LEU 82 n 93 LEU 82 A VAL 83 n 94 VAL 83 A GLY 84 n 95 GLY 84 A TRP 85 n 96 TRP 85 A PRO 86 n 97 PRO 86 A ALA 87 n 98 ALA 87 A PRO 88 n 99 PRO 88 A GLN 89 n 100 GLN 89 A GLY 90 n 101 GLY 90 A SER 91 n 102 SER 91 A ARG 92 n 103 ARG 92 A SER 93 n 104 SER 93 A LEU 94 n 105 LEU 94 A THR 95 n 106 THR 95 A PRO 96 n 107 PRO 96 A CYS 97 n 108 CYS 97 A THR 98 n 109 THR 98 A CYS 99 n 110 CYS 99 A GLY 100 n 111 GLY 100 A SER 101 n 112 SER 101 A SER 102 n 113 SER 102 A ASP 103 n 114 ASP 103 A LEU 104 n 115 LEU 104 A TYR 105 n 116 TYR 105 A LEU 106 n 117 LEU 106 A VAL 107 n 118 VAL 107 A THR 108 n 119 THR 108 A ARG 109 n 120 ARG 109 A HIS 110 n 121 HIS 110 A ALA 111 n 122 ALA 111 A ASP 112 n 123 ASP 112 A VAL 113 n 124 VAL 113 A ILE 114 n 125 ILE 114 A PRO 115 n 126 PRO 115 A VAL 116 n 127 VAL 116 A ARG 117 n 128 ARG 117 A ARG 118 n 129 ARG 118 A ARG 119 n 130 ARG 119 A GLY 120 n 131 GLY 120 A ASP 121 n 132 ASP 121 A SER 122 n 133 SER 122 A ARG 123 n 134 ARG 123 A GLY 124 n 135 GLY 124 A SER 125 n 136 SER 125 A LEU 126 n 137 LEU 126 A LEU 127 n 138 LEU 127 A SER 128 n 139 SER 128 A PRO 129 n 140 PRO 129 A ARG 130 n 141 ARG 130 A PRO 131 n 142 PRO 131 A ILE 132 n 143 ILE 132 A SER 133 n 144 SER 133 A TYR 134 n 145 TYR 134 A LEU 135 n 146 LEU 135 A LYS 136 n 147 LYS 136 A GLY 137 n 148 GLY 137 A SER 138 n 149 SER 138 A SER 139 n 150 SER 139 A GLY 140 n 151 GLY 140 A GLY 141 n 152 GLY 141 A PRO 142 n 153 PRO 142 A LEU 143 n 154 LEU 143 A LEU 144 n 155 LEU 144 A CYS 145 n 156 CYS 145 A PRO 146 n 157 PRO 146 A ALA 147 n 158 ALA 147 A GLY 148 n 159 GLY 148 A HIS 149 n 160 HIS 149 A ALA 150 n 161 ALA 150 A VAL 151 n 162 VAL 151 A GLY 152 n 163 GLY 152 A LEU 153 n 164 LEU 153 A PHE 154 n 165 PHE 154 A ARG 155 n 166 ARG 155 A ALA 156 n 167 ALA 156 A ALA 157 n 168 ALA 157 A VAL 158 n 169 VAL 158 A CYS 159 n 170 CYS 159 A THR 160 n 171 THR 160 A ARG 161 n 172 ARG 161 A GLY 162 n 173 GLY 162 A VAL 163 n 174 VAL 163 A THR 164 n 175 THR 164 A LYS 165 n 176 LYS 165 A ALA 166 n 177 ALA 166 A VAL 167 n 178 VAL 167 A ASP 168 n 179 ASP 168 A PHE 169 n 180 PHE 169 A ILE 170 n 181 ILE 170 A PRO 171 n 182 PRO 171 A VAL 172 n 183 VAL 172 A GLU 173 n 184 GLU 173 A ASN 174 n 185 ASN 174 A LEU 175 n 186 LEU 175 A GLU 176 n 187 GLU 176 A THR 177 n 188 THR 177 A THR 178 n 189 THR 178 A MET 179 n 190 MET 179 A ARG 180 n 191 ARG 180 A n 192 181 A n 193 182 A n 194 183 A n 195 184 A n 196 185 A n 197 186 A n 198 187 A n 199 188 A n 200 189 A n 1 -10 B n 2 -9 B n 3 -8 B n 4 -7 B n 5 -6 B n 6 -5 B n 7 -4 B n 8 -3 B n 9 -2 B n 10 -1 B n 11 0 B n 12 1 B n 13 2 B n 14 3 B n 15 4 B n 16 5 B n 17 6 B n 18 7 B n 19 8 B n 20 9 B n 21 10 B n 22 11 B n 23 12 B n 24 13 B n 25 14 B n 26 15 B n 27 16 B n 28 17 B n 29 18 B n 30 19 B n 31 20 B n 32 21 B n 33 22 B n 34 23 B n 35 24 B n 36 25 B n 37 26 B n 38 27 B GLN 28 n 39 GLN 28 B VAL 29 n 40 VAL 29 B GLU 30 n 41 GLU 30 B GLY 31 n 42 GLY 31 B GLU 32 n 43 GLU 32 B VAL 33 n 44 VAL 33 B GLN 34 n 45 GLN 34 B ILE 35 n 46 ILE 35 B VAL 36 n 47 VAL 36 B SER 37 n 48 SER 37 B THR 38 n 49 THR 38 B ALA 39 n 50 ALA 39 B THR 40 n 51 THR 40 B GLN 41 n 52 GLN 41 B THR 42 n 53 THR 42 B PHE 43 n 54 PHE 43 B LEU 44 n 55 LEU 44 B ALA 45 n 56 ALA 45 B THR 46 n 57 THR 46 B CYS 47 n 58 CYS 47 B ILE 48 n 59 ILE 48 B ASN 49 n 60 ASN 49 B GLY 50 n 61 GLY 50 B VAL 51 n 62 VAL 51 B CYS 52 n 63 CYS 52 B TRP 53 n 64 TRP 53 B THR 54 n 65 THR 54 B VAL 55 n 66 VAL 55 B TYR 56 n 67 TYR 56 B HIS 57 n 68 HIS 57 B GLY 58 n 69 GLY 58 B ALA 59 n 70 ALA 59 B GLY 60 n 71 GLY 60 B THR 61 n 72 THR 61 B ARG 62 n 73 ARG 62 B THR 63 n 74 THR 63 B ILE 64 n 75 ILE 64 B ALA 65 n 76 ALA 65 B SER 66 n 77 SER 66 B PRO 67 n 78 PRO 67 B LYS 68 n 79 LYS 68 B GLY 69 n 80 GLY 69 B PRO 70 n 81 PRO 70 B VAL 71 n 82 VAL 71 B ILE 72 n 83 ILE 72 B GLN 73 n 84 GLN 73 B MET 74 n 85 MET 74 B TYR 75 n 86 TYR 75 B THR 76 n 87 THR 76 B ASN 77 n 88 ASN 77 B VAL 78 n 89 VAL 78 B ASP 79 n 90 ASP 79 B GLN 80 n 91 GLN 80 B ASP 81 n 92 ASP 81 B LEU 82 n 93 LEU 82 B VAL 83 n 94 VAL 83 B GLY 84 n 95 GLY 84 B TRP 85 n 96 TRP 85 B PRO 86 n 97 PRO 86 B ALA 87 n 98 ALA 87 B PRO 88 n 99 PRO 88 B GLN 89 n 100 GLN 89 B GLY 90 n 101 GLY 90 B SER 91 n 102 SER 91 B ARG 92 n 103 ARG 92 B SER 93 n 104 SER 93 B LEU 94 n 105 LEU 94 B THR 95 n 106 THR 95 B PRO 96 n 107 PRO 96 B CYS 97 n 108 CYS 97 B THR 98 n 109 THR 98 B CYS 99 n 110 CYS 99 B GLY 100 n 111 GLY 100 B SER 101 n 112 SER 101 B SER 102 n 113 SER 102 B ASP 103 n 114 ASP 103 B LEU 104 n 115 LEU 104 B TYR 105 n 116 TYR 105 B LEU 106 n 117 LEU 106 B VAL 107 n 118 VAL 107 B THR 108 n 119 THR 108 B ARG 109 n 120 ARG 109 B HIS 110 n 121 HIS 110 B ALA 111 n 122 ALA 111 B ASP 112 n 123 ASP 112 B VAL 113 n 124 VAL 113 B ILE 114 n 125 ILE 114 B PRO 115 n 126 PRO 115 B VAL 116 n 127 VAL 116 B ARG 117 n 128 ARG 117 B ARG 118 n 129 ARG 118 B ARG 119 n 130 ARG 119 B GLY 120 n 131 GLY 120 B ASP 121 n 132 ASP 121 B SER 122 n 133 SER 122 B ARG 123 n 134 ARG 123 B GLY 124 n 135 GLY 124 B SER 125 n 136 SER 125 B LEU 126 n 137 LEU 126 B LEU 127 n 138 LEU 127 B SER 128 n 139 SER 128 B PRO 129 n 140 PRO 129 B ARG 130 n 141 ARG 130 B PRO 131 n 142 PRO 131 B ILE 132 n 143 ILE 132 B SER 133 n 144 SER 133 B TYR 134 n 145 TYR 134 B LEU 135 n 146 LEU 135 B LYS 136 n 147 LYS 136 B GLY 137 n 148 GLY 137 B SER 138 n 149 SER 138 B SER 139 n 150 SER 139 B GLY 140 n 151 GLY 140 B GLY 141 n 152 GLY 141 B PRO 142 n 153 PRO 142 B LEU 143 n 154 LEU 143 B LEU 144 n 155 LEU 144 B CYS 145 n 156 CYS 145 B PRO 146 n 157 PRO 146 B ALA 147 n 158 ALA 147 B GLY 148 n 159 GLY 148 B HIS 149 n 160 HIS 149 B ALA 150 n 161 ALA 150 B VAL 151 n 162 VAL 151 B GLY 152 n 163 GLY 152 B LEU 153 n 164 LEU 153 B PHE 154 n 165 PHE 154 B ARG 155 n 166 ARG 155 B ALA 156 n 167 ALA 156 B ALA 157 n 168 ALA 157 B VAL 158 n 169 VAL 158 B CYS 159 n 170 CYS 159 B THR 160 n 171 THR 160 B ARG 161 n 172 ARG 161 B GLY 162 n 173 GLY 162 B VAL 163 n 174 VAL 163 B THR 164 n 175 THR 164 B LYS 165 n 176 LYS 165 B ALA 166 n 177 ALA 166 B VAL 167 n 178 VAL 167 B ASP 168 n 179 ASP 168 B PHE 169 n 180 PHE 169 B ILE 170 n 181 ILE 170 B PRO 171 n 182 PRO 171 B VAL 172 n 183 VAL 172 B GLU 173 n 184 GLU 173 B ASN 174 n 185 ASN 174 B LEU 175 n 186 LEU 175 B GLU 176 n 187 GLU 176 B THR 177 n 188 THR 177 B THR 178 n 189 THR 178 B MET 179 n 190 MET 179 B ARG 180 n 191 ARG 180 B n 192 181 B n 193 182 B n 194 183 B n 195 184 B n 196 185 B n 197 186 B n 198 187 B n 199 188 B n 200 189 B n 1 19 C LYS 20 n 2 LYS 20 C GLY 21 n 3 GLY 21 C SER 22 n 4 SER 22 C VAL 23 n 5 VAL 23 C VAL 24 n 6 VAL 24 C ILE 25 n 7 ILE 25 C VAL 26 n 8 VAL 26 C GLY 27 n 9 GLY 27 C ARG 28 n 10 ARG 28 C ILE 29 n 11 ILE 29 C VAL 30 n 12 VAL 30 C LEU 31 n 13 LEU 31 C SER 32 n 14 SER 32 C GLY 33 n 15 GLY 33 C LYS 34 n 16 LYS 34 C PRO 35 n 17 PRO 35 C ALA 36 n 18 ALA 36 C ILE 37 n 19 ILE 37 C ILE 38 n 20 ILE 38 C PRO 39 n 21 PRO 39 C LYS 40 n 22 LYS 40 C n 23 41 C n 1 19 D n 2 20 D GLY 21 n 3 GLY 21 D SER 22 n 4 SER 22 D VAL 23 n 5 VAL 23 D VAL 24 n 6 VAL 24 D ILE 25 n 7 ILE 25 D VAL 26 n 8 VAL 26 D GLY 27 n 9 GLY 27 D ARG 28 n 10 ARG 28 D ILE 29 n 11 ILE 29 D VAL 30 n 12 VAL 30 D LEU 31 n 13 LEU 31 D SER 32 n 14 SER 32 D GLY 33 n 15 GLY 33 D LYS 34 n 16 LYS 34 D PRO 35 n 17 PRO 35 D ALA 36 n 18 ALA 36 D n 19 37 D n 20 38 D n 21 39 D n 22 40 D n 23 41 D author_and_software_defined_assembly PISA 4 tetrameric 7260 -122 16200 A CYS 97 A SG CYS 108 1_555 A ZN 301 E ZN ZN 1_555 A CYS 99 A SG CYS 110 1_555 98.8 A CYS 97 A SG CYS 108 1_555 A ZN 301 E ZN ZN 1_555 A CYS 145 A SG CYS 156 1_555 103.1 A CYS 99 A SG CYS 110 1_555 A ZN 301 E ZN ZN 1_555 A CYS 145 A SG CYS 156 1_555 99.9 A CYS 97 A SG CYS 108 1_555 A ZN 301 E ZN ZN 1_555 A HOH 307 H O HOH 1_555 122.0 A CYS 99 A SG CYS 110 1_555 A ZN 301 E ZN ZN 1_555 A HOH 307 H O HOH 1_555 116.0 A CYS 145 A SG CYS 156 1_555 A ZN 301 E ZN ZN 1_555 A HOH 307 H O HOH 1_555 113.7 B CYS 97 B SG CYS 108 1_555 B ZN 301 G ZN ZN 1_555 B CYS 99 B SG CYS 110 1_555 95.6 B CYS 97 B SG CYS 108 1_555 B ZN 301 G ZN ZN 1_555 B CYS 145 B SG CYS 156 1_555 106.8 B CYS 99 B SG CYS 110 1_555 B ZN 301 G ZN ZN 1_555 B CYS 145 B SG CYS 156 1_555 115.1 B CYS 97 B SG CYS 108 1_555 B ZN 301 G ZN ZN 1_555 B HOH 305 I O HOH 1_555 111.1 B CYS 99 B SG CYS 110 1_555 B ZN 301 G ZN ZN 1_555 B HOH 305 I O HOH 1_555 103.8 B CYS 145 B SG CYS 156 1_555 B ZN 301 G ZN ZN 1_555 B HOH 305 I O HOH 1_555 121.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 6 A N TYR 17 C O VAL 30 C O VAL 12 C O GLY 27 C O GLY 9 A N ILE 35 A N ILE 46 A N GLN 34 A N GLN 45 A O ALA 45 A O ALA 56 A N THR 46 A N THR 57 A O TRP 53 A O TRP 64 A N CYS 52 A N CYS 63 A O TRP 85 A O TRP 96 A O LEU 82 A O LEU 93 A N ASN 77 A N ASN 88 A N LEU 106 A N LEU 117 A O ILE 114 A O ILE 125 A N ARG 117 A N ARG 128 A O SER 125 A O SER 136 A N ARG 130 A N ARG 141 A O THR 164 A O THR 175 A O ASP 168 A O ASP 179 A N ALA 156 A N ALA 167 A O VAL 151 A O VAL 162 A N LEU 143 A N LEU 154 A O LEU 144 A O LEU 155 A N TYR 105 A N TYR 116 B N ASN 77 B N ASN 88 B O LEU 82 B O LEU 93 B O TRP 85 B O TRP 96 B N CYS 52 B N CYS 63 B O TRP 53 B O TRP 64 B N THR 46 B N THR 57 B O ALA 45 B O ALA 56 B N GLN 34 B N GLN 45 B N ILE 35 B N ILE 46 D O VAL 26 D O VAL 8 D O VAL 30 D O VAL 12 C N ALA 36 C N ALA 18 B N LEU 106 B N LEU 117 B O ILE 114 B O ILE 125 B N ARG 117 B N ARG 128 B O SER 125 B O SER 136 B N ARG 130 B N ARG 141 B O THR 164 B O THR 175 B O ASP 168 B O ASP 179 B N ALA 156 B N ALA 167 B O VAL 151 B O VAL 162 B N LEU 143 B N LEU 154 B O LEU 144 B O LEU 155 B N TYR 105 B N TYR 116 1 A MET -10 A MET 1 1 Y 1 A ALA -9 A ALA 2 1 Y 1 A SER -8 A SER 3 1 Y 1 A MET -7 A MET 4 1 Y 1 A THR -6 A THR 5 1 Y 1 A GLY -5 A GLY 6 1 Y 1 A GLY -4 A GLY 7 1 Y 1 A GLN -3 A GLN 8 1 Y 1 A GLN -2 A GLN 9 1 Y 1 A MET -1 A MET 10 1 Y 1 A GLY 0 A GLY 11 1 Y 1 A SER 181 A SER 192 1 Y 1 A GLY 182 A GLY 193 1 Y 1 A SER 183 A SER 194 1 Y 1 A HIS 184 A HIS 195 1 Y 1 A HIS 185 A HIS 196 1 Y 1 A HIS 186 A HIS 197 1 Y 1 A HIS 187 A HIS 198 1 Y 1 A HIS 188 A HIS 199 1 Y 1 A HIS 189 A HIS 200 1 Y 1 B MET -10 B MET 1 1 Y 1 B ALA -9 B ALA 2 1 Y 1 B SER -8 B SER 3 1 Y 1 B MET -7 B MET 4 1 Y 1 B THR -6 B THR 5 1 Y 1 B GLY -5 B GLY 6 1 Y 1 B GLY -4 B GLY 7 1 Y 1 B GLN -3 B GLN 8 1 Y 1 B GLN -2 B GLN 9 1 Y 1 B MET -1 B MET 10 1 Y 1 B GLY 0 B GLY 11 1 Y 1 B ALA 1 B ALA 12 1 Y 1 B PRO 2 B PRO 13 1 Y 1 B ILE 3 B ILE 14 1 Y 1 B THR 4 B THR 15 1 Y 1 B ALA 5 B ALA 16 1 Y 1 B TYR 6 B TYR 17 1 Y 1 B ALA 7 B ALA 18 1 Y 1 B GLN 8 B GLN 19 1 Y 1 B GLN 9 B GLN 20 1 Y 1 B THR 10 B THR 21 1 Y 1 B ARG 11 B ARG 22 1 Y 1 B GLY 12 B GLY 23 1 Y 1 B LEU 13 B LEU 24 1 Y 1 B LEU 14 B LEU 25 1 Y 1 B GLY 15 B GLY 26 1 Y 1 B CYS 16 B CYS 27 1 Y 1 B ILE 17 B ILE 28 1 Y 1 B ILE 18 B ILE 29 1 Y 1 B THR 19 B THR 30 1 Y 1 B SER 20 B SER 31 1 Y 1 B LEU 21 B LEU 32 1 Y 1 B THR 22 B THR 33 1 Y 1 B GLY 23 B GLY 34 1 Y 1 B ARG 24 B ARG 35 1 Y 1 B ASP 25 B ASP 36 1 Y 1 B LYS 26 B LYS 37 1 Y 1 B ASN 27 B ASN 38 1 Y 1 B SER 181 B SER 192 1 Y 1 B GLY 182 B GLY 193 1 Y 1 B SER 183 B SER 194 1 Y 1 B HIS 184 B HIS 195 1 Y 1 B HIS 185 B HIS 196 1 Y 1 B HIS 186 B HIS 197 1 Y 1 B HIS 187 B HIS 198 1 Y 1 B HIS 188 B HIS 199 1 Y 1 B HIS 189 B HIS 200 1 Y 1 C LYS 19 C LYS 1 1 Y 1 C LYS 41 C LYS 23 1 Y 1 D LYS 19 D LYS 1 1 Y 1 D LYS 20 D LYS 2 1 Y 1 D ILE 37 D ILE 19 1 Y 1 D ILE 38 D ILE 20 1 Y 1 D PRO 39 D PRO 21 1 Y 1 D LYS 40 D LYS 22 1 Y 1 D LYS 41 D LYS 23 1 Y 1 -3.31 0.50 120.30 116.99 A A A NE CZ NH1 ARG ARG ARG 109 109 109 N 1 3.80 0.50 120.30 124.10 A A A NE CZ NH1 ARG ARG ARG 118 118 118 N 1 -3.50 0.50 120.30 116.80 A A A NE CZ NH2 ARG ARG ARG 118 118 118 N 1 6.65 0.90 118.30 124.95 B B B CB CG OD2 ASP ASP ASP 79 79 79 N 1 5.95 0.90 118.30 124.25 B B B CB CG OD2 ASP ASP ASP 81 81 81 N 1 4.32 0.50 120.30 124.62 B B B NE CZ NH1 ARG ARG ARG 92 92 92 N 1 A THR 38 -116.89 -156.00 1 A ARG 119 -145.13 36.99 1 A SER 122 -143.44 15.07 1 A PRO 129 -47.85 154.32 1 B THR 40 -98.80 -63.30 1 B PHE 43 -155.23 -157.78 1 B ARG 119 -98.74 -65.50 1 B SER 128 -176.47 98.07 1 B ARG 161 47.67 72.92 50.33 -0.97000 -0.49000 0.00000 -0.97000 0.00000 1.46000 0.946 0.915 0.234 0.18 0.182 2.75 20.00 960 17776 5.100 100.0 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.339 0.263 0.80 0.80 1.40 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 2.75 20.00 102 2868 34 0 2732 0.021 0.021 2824 2.164 1.980 3849 5.456 5.000 366 0.128 0.200 462 0.007 0.020 2073 0.252 0.200 1258 0.178 0.200 167 0.276 0.200 43 0.129 0.200 5 1.910 2.000 1831 3.855 4.000 2973 6.522 7.000 993 10.166 11.000 872 0.405 0.311 2.82 91 1234 20 63.50 2.750 35.000 1RTL 18742 0.076 1 6.600 99.4 0.528 2.75 2.85 2.500 4.60 97.2 refinement REFMAC 5.1.27 data reduction DENZO data scaling SCALEPACK CRYSTAL STRUCTURE OF HCV NS3 PROTEASE DOMAIN: NS4A PEPTIDE COMPLEX WITH COVALENTLY BOUND PYRROLIDINE-5,5-TRANSLACTAM INHIBITOR 1 N N 1 N N 2 N N 2 N N 3 N N 4 N N 3 N N 5 N N 5 N N 5 N N 5 N N A GLY 12 A GLY 23 HELX_P A GLY 23 A GLY 34 1 1 12 A TYR 56 A TYR 67 HELX_P A GLY 60 A GLY 71 1 2 5 A ILE 132 A ILE 143 HELX_P A LYS 136 A LYS 147 1 3 5 A VAL 172 A VAL 183 HELX_P A ARG 180 A ARG 191 1 4 9 B TYR 56 B TYR 67 HELX_P B GLY 60 B GLY 71 1 5 5 B ILE 132 B ILE 143 HELX_P B LYS 136 B LYS 147 1 6 5 B VAL 172 B VAL 183 HELX_P B MET 179 B MET 190 1 7 8 covale 1.401 none A SER 139 A OG SER 150 1_555 A CPX 201 F C24 CPX 1_555 metalc 2.333 A CYS 97 A SG CYS 108 1_555 A ZN 301 E ZN ZN 1_555 metalc 2.366 A CYS 99 A SG CYS 110 1_555 A ZN 301 E ZN ZN 1_555 metalc 2.383 A CYS 145 A SG CYS 156 1_555 A ZN 301 E ZN ZN 1_555 metalc 2.158 A ZN 301 E ZN ZN 1_555 A HOH 307 H O HOH 1_555 metalc 2.347 B CYS 97 B SG CYS 108 1_555 B ZN 301 G ZN ZN 1_555 metalc 2.310 B CYS 99 B SG CYS 110 1_555 B ZN 301 G ZN ZN 1_555 metalc 2.301 B CYS 145 B SG CYS 156 1_555 B ZN 301 G ZN ZN 1_555 metalc 2.334 B ZN 301 G ZN ZN 1_555 B HOH 305 I O HOH 1_555 Viral protein complex VIRAL PROTEIN, SERINE PROTEASE, NONSTRUCTURAL PROTEIN, COFACTOR PEPTIDE, HELICASE, INHIBITOR, TRANSLACTAM, Viral protein complex Q91RS4_9HEPC UNP 1 1 Q91RS4 APITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTATQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQ DLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGLFRAAVCT RGVAKAVDFIPVENLETTMRS CAB53095 GB 2 1678 5748511 GSVVIVGRIVLSGKPAIIP 1 181 1RTL 1 181 Q91RS4 A 1 12 192 1 181 1RTL 1 181 Q91RS4 B 1 12 192 1678 1696 1RTL 21 39 5748511 C 2 3 21 1678 1696 1RTL 21 39 5748511 D 2 3 21 1 cloning artifact MET -10 1RTL A Q91RS4 UNP 1 1 cloning artifact ALA -9 1RTL A Q91RS4 UNP 2 1 cloning artifact SER -8 1RTL A Q91RS4 UNP 3 1 cloning artifact MET -7 1RTL A Q91RS4 UNP 4 1 cloning artifact THR -6 1RTL A Q91RS4 UNP 5 1 cloning artifact GLY -5 1RTL A Q91RS4 UNP 6 1 cloning artifact GLY -4 1RTL A Q91RS4 UNP 7 1 cloning artifact GLN -3 1RTL A Q91RS4 UNP 8 1 cloning artifact GLN -2 1RTL A Q91RS4 UNP 9 1 cloning artifact MET -1 1RTL A Q91RS4 UNP 10 1 cloning artifact GLY 0 1RTL A Q91RS4 UNP 11 1 ALA engineered mutation THR 164 1RTL A Q91RS4 UNP 164 175 1 expression tag GLY 182 1RTL A Q91RS4 UNP 193 1 expression tag SER 183 1RTL A Q91RS4 UNP 194 1 expression tag HIS 184 1RTL A Q91RS4 UNP 195 1 expression tag HIS 185 1RTL A Q91RS4 UNP 196 1 expression tag HIS 186 1RTL A Q91RS4 UNP 197 1 expression tag HIS 187 1RTL A Q91RS4 UNP 198 1 expression tag HIS 188 1RTL A Q91RS4 UNP 199 1 expression tag HIS 189 1RTL A Q91RS4 UNP 200 2 cloning artifact MET -10 1RTL B Q91RS4 UNP 1 2 cloning artifact ALA -9 1RTL B Q91RS4 UNP 2 2 cloning artifact SER -8 1RTL B Q91RS4 UNP 3 2 cloning artifact MET -7 1RTL B Q91RS4 UNP 4 2 cloning artifact THR -6 1RTL B Q91RS4 UNP 5 2 cloning artifact GLY -5 1RTL B Q91RS4 UNP 6 2 cloning artifact GLY -4 1RTL B Q91RS4 UNP 7 2 cloning artifact GLN -3 1RTL B Q91RS4 UNP 8 2 cloning artifact GLN -2 1RTL B Q91RS4 UNP 9 2 cloning artifact MET -1 1RTL B Q91RS4 UNP 10 2 cloning artifact GLY 0 1RTL B Q91RS4 UNP 11 2 ALA engineered mutation THR 164 1RTL B Q91RS4 UNP 164 175 2 expression tag GLY 182 1RTL B Q91RS4 UNP 193 2 expression tag SER 183 1RTL B Q91RS4 UNP 194 2 expression tag HIS 184 1RTL B Q91RS4 UNP 195 2 expression tag HIS 185 1RTL B Q91RS4 UNP 196 2 expression tag HIS 186 1RTL B Q91RS4 UNP 197 2 expression tag HIS 187 1RTL B Q91RS4 UNP 198 2 expression tag HIS 188 1RTL B Q91RS4 UNP 199 2 expression tag HIS 189 1RTL B Q91RS4 UNP 200 3 cloning artifact LYS 19 1RTL C 5748511 GB 1 3 cloning artifact LYS 20 1RTL C 5748511 GB 2 3 cloning artifact LYS 40 1RTL C 5748511 GB 22 3 cloning artifact LYS 41 1RTL C 5748511 GB 23 4 cloning artifact LYS 19 1RTL D 5748511 GB 1 4 cloning artifact LYS 20 1RTL D 5748511 GB 2 4 cloning artifact LYS 40 1RTL D 5748511 GB 22 4 cloning artifact LYS 41 1RTL D 5748511 GB 23 7 7 7 7 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A TYR 6 A TYR 17 A GLN 9 A GLN 20 C VAL 24 C VAL 6 C VAL 30 C VAL 12 A VAL 33 A VAL 44 A SER 37 A SER 48 A THR 42 A THR 53 A ILE 48 A ILE 59 A VAL 51 A VAL 62 A VAL 55 A VAL 66 A LEU 82 A LEU 93 A PRO 86 A PRO 97 A TYR 75 A TYR 86 A ASN 77 A ASN 88 A ASP 103 A ASP 114 A VAL 107 A VAL 118 A VAL 113 A VAL 124 A ARG 118 A ARG 129 A ARG 123 A ARG 134 A PRO 131 A PRO 142 A VAL 163 A VAL 174 A PRO 171 A PRO 182 A ALA 150 A ALA 161 A THR 160 A THR 171 A PRO 142 A PRO 153 A LEU 144 A LEU 155 A ASP 103 A ASP 114 A VAL 107 A VAL 118 B TYR 75 B TYR 86 B ASN 77 B ASN 88 B LEU 82 B LEU 93 B PRO 86 B PRO 97 B VAL 51 B VAL 62 B VAL 55 B VAL 66 B THR 42 B THR 53 B ILE 48 B ILE 59 B VAL 33 B VAL 44 B SER 37 B SER 48 D VAL 24 D VAL 6 D VAL 30 D VAL 12 C ALA 36 C ALA 18 C ILE 37 C ILE 19 B ASP 103 B ASP 114 B VAL 107 B VAL 118 B VAL 113 B VAL 124 B GLY 120 B GLY 131 B ARG 123 B ARG 134 B PRO 131 B PRO 142 B VAL 163 B VAL 174 B PRO 171 B PRO 182 B ALA 150 B ALA 161 B THR 160 B THR 171 B PRO 142 B PRO 153 B LEU 144 B LEU 155 B ASP 103 B ASP 114 B VAL 107 B VAL 118 BINDING SITE FOR RESIDUE ZN A 301 A ZN 301 Software 4 BINDING SITE FOR RESIDUE ZN B 301 B ZN 301 Software 4 BINDING SITE FOR RESIDUE CPX A 201 A CPX 201 Software 10 A CYS 97 A CYS 108 4 1_555 A CYS 99 A CYS 110 4 1_555 A CYS 145 A CYS 156 4 1_555 A HOH 307 H HOH 4 1_555 B CYS 97 B CYS 108 4 1_555 B CYS 99 B CYS 110 4 1_555 B CYS 145 B CYS 156 4 1_555 B HOH 305 I HOH 4 1_555 A GLN 41 A GLN 52 10 1_555 A HIS 57 A HIS 68 10 1_555 A GLY 58 A GLY 69 10 1_555 A ILE 132 A ILE 143 10 1_555 A SER 139 A SER 150 10 1_555 A PHE 154 A PHE 165 10 1_555 A ALA 156 A ALA 167 10 1_555 A ALA 157 A ALA 168 10 1_555 A ASP 168 A ASP 179 10 1_555 A HOH 329 H HOH 10 1_555 155 H 3 2