0.017291 0.000000 0.000000 0.000000 0.017291 0.000000 0.000000 0.000000 0.006187 0.00000 0.00000 0.00000 Dong, C.J. Naismith, J.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 57.833 57.833 161.620 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H6 O6 150.087 S,R MESO-TARTARIC ACID non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N O N 305 N O N 306 N C N 307 S C N 308 N O N 309 R C N 310 N O N 311 N C N 312 N O N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N N N 321 S C N 322 N C N 323 N O N 324 R C N 325 N O N 326 N C N 327 N O N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N N N 338 S C N 339 N C N 340 N O N 341 N C Y 342 N C Y 343 N C Y 344 N C Y 345 N N Y 346 N C Y 347 N C Y 348 N C Y 349 N C Y 350 N C N 351 N O N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N N N 365 S C N 366 N C N 367 N O N 368 N C Y 369 N C Y 370 N C Y 371 N C Y 372 N C Y 373 N C Y 374 N C N 375 N O N 376 N O N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N N N 389 S C N 390 N C N 391 N O N 392 N C N 393 N C N 394 N C N 395 N O N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N doub N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N doub N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N doub N 328 N sing N 329 N sing N 330 N sing N 331 N sing Y 332 N doub Y 333 N sing Y 334 N sing N 335 N sing Y 336 N doub Y 337 N sing Y 338 N sing N 339 N sing Y 340 N sing Y 341 N doub N 342 N sing Y 343 N doub N 344 N sing Y 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N doub N 356 N sing N 357 N sing N 358 N sing N 359 N sing Y 360 N doub Y 361 N sing Y 362 N sing N 363 N sing Y 364 N doub N 365 N sing Y 366 N doub N 367 N sing Y 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N doub N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing TO BE PUBLISHED 0353 RmlC (dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase) crystal structure from Pseudomonas aeruginosa, apo structure 10.2210/pdb1rtv/pdb pdb_00001rtv 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 110 1 IMAGE PLATE 2000-05-10 MAC Science DIP-2000 SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE ENRAF-NONIUS 21082.795 dTDP-4-dehydrorhamnose 3,5-epimerase 5.1.3.13 1 man polymer 150.087 S,R MESO-TARTARIC ACID 1 syn non-polymer 18.015 water 20 nat water RmlC, dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase no no SMAMKATRLAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSARGVLRGLHYQIRQAQGKLVRATL GEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWP LQDAPLLSEKDRQGKAFADADCFP SMAMKATRLAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSARGVLRGLHYQIRQAQGKLVRATL GEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWP LQDAPLLSEKDRQGKAFADADCFP A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Pseudomonas Escherichia Escherichia coli sample rmlc 287 Pseudomonas aeruginosa 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid pET23a(+) 1 3.20 61.60 VAPOR DIFFUSION, SITTING DROP 6.5 0.2M Sodium tartrate, 0.1M MOPS, 8% PEG 8000, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2004-03-02 1 1 2008-04-29 1 2 2011-07-13 1 3 2023-08-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2003-12-10 REL REL SRT S,R MESO-TARTARIC ACID HOH water 1DZR pdb entry 1DZR PDB experimental model TAR 41 2 SRT SRT 182 A HOH 1 3 HOH HOH 183 A HOH 2 3 HOH HOH 184 A HOH 3 3 HOH HOH 185 A HOH 4 3 HOH HOH 186 A HOH 5 3 HOH HOH 187 A HOH 6 3 HOH HOH 188 A HOH 7 3 HOH HOH 189 A HOH 8 3 HOH HOH 190 A HOH 9 3 HOH HOH 191 A HOH 10 3 HOH HOH 192 A HOH 11 3 HOH HOH 193 A HOH 12 3 HOH HOH 194 A HOH 13 3 HOH HOH 195 A HOH 14 3 HOH HOH 196 A HOH 15 3 HOH HOH 197 A HOH 16 3 HOH HOH 198 A HOH 17 3 HOH HOH 199 A HOH 18 3 HOH HOH 200 A HOH 19 3 HOH HOH 201 A HOH 20 3 HOH HOH 202 A SER -2 n 1 SER -2 A MET -1 n 2 MET -1 A ALA 0 n 3 ALA 0 A MET 1 n 4 MET 1 A LYS 2 n 5 LYS 2 A ALA 3 n 6 ALA 3 A THR 4 n 7 THR 4 A ARG 5 n 8 ARG 5 A LEU 6 n 9 LEU 6 A ALA 7 n 10 ALA 7 A ILE 8 n 11 ILE 8 A PRO 9 n 12 PRO 9 A ASP 10 n 13 ASP 10 A VAL 11 n 14 VAL 11 A ILE 12 n 15 ILE 12 A LEU 13 n 16 LEU 13 A PHE 14 n 17 PHE 14 A GLU 15 n 18 GLU 15 A PRO 16 n 19 PRO 16 A ARG 17 n 20 ARG 17 A VAL 18 n 21 VAL 18 A PHE 19 n 22 PHE 19 A GLY 20 n 23 GLY 20 A ASP 21 n 24 ASP 21 A ASP 22 n 25 ASP 22 A ARG 23 n 26 ARG 23 A GLY 24 n 27 GLY 24 A PHE 25 n 28 PHE 25 A PHE 26 n 29 PHE 26 A PHE 27 n 30 PHE 27 A GLU 28 n 31 GLU 28 A SER 29 n 32 SER 29 A TYR 30 n 33 TYR 30 A ASN 31 n 34 ASN 31 A GLN 32 n 35 GLN 32 A ARG 33 n 36 ARG 33 A ALA 34 n 37 ALA 34 A PHE 35 n 38 PHE 35 A GLU 36 n 39 GLU 36 A GLU 37 n 40 GLU 37 A ALA 38 n 41 ALA 38 A CYS 39 n 42 CYS 39 A GLY 40 n 43 GLY 40 A HIS 41 n 44 HIS 41 A PRO 42 n 45 PRO 42 A VAL 43 n 46 VAL 43 A SER 44 n 47 SER 44 A PHE 45 n 48 PHE 45 A VAL 46 n 49 VAL 46 A GLN 47 n 50 GLN 47 A ASP 48 n 51 ASP 48 A ASN 49 n 52 ASN 49 A HIS 50 n 53 HIS 50 A SER 51 n 54 SER 51 A ARG 52 n 55 ARG 52 A SER 53 n 56 SER 53 A ALA 54 n 57 ALA 54 A ARG 55 n 58 ARG 55 A GLY 56 n 59 GLY 56 A VAL 57 n 60 VAL 57 A LEU 58 n 61 LEU 58 A ARG 59 n 62 ARG 59 A GLY 60 n 63 GLY 60 A LEU 61 n 64 LEU 61 A HIS 62 n 65 HIS 62 A TYR 63 n 66 TYR 63 A GLN 64 n 67 GLN 64 A ILE 65 n 68 ILE 65 A ARG 66 n 69 ARG 66 A GLN 67 n 70 GLN 67 A ALA 68 n 71 ALA 68 A GLN 69 n 72 GLN 69 A GLY 70 n 73 GLY 70 A LYS 71 n 74 LYS 71 A LEU 72 n 75 LEU 72 A VAL 73 n 76 VAL 73 A ARG 74 n 77 ARG 74 A ALA 75 n 78 ALA 75 A THR 76 n 79 THR 76 A LEU 77 n 80 LEU 77 A GLY 78 n 81 GLY 78 A GLU 79 n 82 GLU 79 A VAL 80 n 83 VAL 80 A PHE 81 n 84 PHE 81 A ASP 82 n 85 ASP 82 A VAL 83 n 86 VAL 83 A ALA 84 n 87 ALA 84 A VAL 85 n 88 VAL 85 A ASP 86 n 89 ASP 86 A LEU 87 n 90 LEU 87 A ARG 88 n 91 ARG 88 A ARG 89 n 92 ARG 89 A GLY 90 n 93 GLY 90 A SER 91 n 94 SER 91 A PRO 92 n 95 PRO 92 A THR 93 n 96 THR 93 A PHE 94 n 97 PHE 94 A GLY 95 n 98 GLY 95 A GLN 96 n 99 GLN 96 A TRP 97 n 100 TRP 97 A VAL 98 n 101 VAL 98 A GLY 99 n 102 GLY 99 A GLU 100 n 103 GLU 100 A ARG 101 n 104 ARG 101 A LEU 102 n 105 LEU 102 A SER 103 n 106 SER 103 A ALA 104 n 107 ALA 104 A GLU 105 n 108 GLU 105 A ASN 106 n 109 ASN 106 A LYS 107 n 110 LYS 107 A ARG 108 n 111 ARG 108 A GLN 109 n 112 GLN 109 A MET 110 n 113 MET 110 A TRP 111 n 114 TRP 111 A ILE 112 n 115 ILE 112 A PRO 113 n 116 PRO 113 A ALA 114 n 117 ALA 114 A GLY 115 n 118 GLY 115 A PHE 116 n 119 PHE 116 A ALA 117 n 120 ALA 117 A HIS 118 n 121 HIS 118 A GLY 119 n 122 GLY 119 A PHE 120 n 123 PHE 120 A VAL 121 n 124 VAL 121 A VAL 122 n 125 VAL 122 A LEU 123 n 126 LEU 123 A SER 124 n 127 SER 124 A GLU 125 n 128 GLU 125 A TYR 126 n 129 TYR 126 A ALA 127 n 130 ALA 127 A GLU 128 n 131 GLU 128 A PHE 129 n 132 PHE 129 A LEU 130 n 133 LEU 130 A TYR 131 n 134 TYR 131 A LYS 132 n 135 LYS 132 A THR 133 n 136 THR 133 A THR 134 n 137 THR 134 A ASP 135 n 138 ASP 135 A PHE 136 n 139 PHE 136 A TRP 137 n 140 TRP 137 A ALA 138 n 141 ALA 138 A PRO 139 n 142 PRO 139 A GLU 140 n 143 GLU 140 A HIS 141 n 144 HIS 141 A GLU 142 n 145 GLU 142 A ARG 143 n 146 ARG 143 A CYS 144 n 147 CYS 144 A ILE 145 n 148 ILE 145 A VAL 146 n 149 VAL 146 A TRP 147 n 150 TRP 147 A ASN 148 n 151 ASN 148 A ASP 149 n 152 ASP 149 A PRO 150 n 153 PRO 150 A GLU 151 n 154 GLU 151 A LEU 152 n 155 LEU 152 A LYS 153 n 156 LYS 153 A ILE 154 n 157 ILE 154 A ASP 155 n 158 ASP 155 A TRP 156 n 159 TRP 156 A PRO 157 n 160 PRO 157 A LEU 158 n 161 LEU 158 A GLN 159 n 162 GLN 159 A ASP 160 n 163 ASP 160 A ALA 161 n 164 ALA 161 A PRO 162 n 165 PRO 162 A LEU 163 n 166 LEU 163 A LEU 164 n 167 LEU 164 A SER 165 n 168 SER 165 A GLU 166 n 169 GLU 166 A LYS 167 n 170 LYS 167 A ASP 168 n 171 ASP 168 A ARG 169 n 172 ARG 169 A GLN 170 n 173 GLN 170 A GLY 171 n 174 GLY 171 A LYS 172 n 175 LYS 172 A ALA 173 n 176 ALA 173 A PHE 174 n 177 PHE 174 A ALA 175 n 178 ALA 175 A ASP 176 n 179 ASP 176 A ALA 177 n 180 ALA 177 A ASP 178 n 181 ASP 178 A CYS 179 n 182 CYS 179 A PHE 180 n 183 PHE 180 A PRO 181 n 184 PRO 181 A 1.2795 -0.1038 0.1575 2.0127 1.7977 6.9689 0.1131 0.0928 -0.0378 -0.0978 -0.1822 0.1435 0.2245 -0.6409 0.0691 0.0107 0.0008 -0.0251 0.0345 0.0092 0.0763 refined 4.4820 41.2220 28.7440 X-RAY DIFFRACTION A 1 A 4 A 184 C 2 X-RAY DIFFRACTION 1 author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 4_454 y-1/2,-x+1/2,z-1/4 crystal symmetry operation -28.9165000000 28.9165000000 -40.4050000000 A N LYS 2 A N LYS 5 A O GLU 15 A O GLU 18 A N ILE 12 A N ILE 15 A O TRP 111 A O TRP 114 A O ILE 112 A O ILE 115 A N LYS 71 A N LYS 74 A N LEU 77 A N LEU 80 A O GLU 128 A O GLU 131 A O ALA 127 A O ALA 130 A N SER 53 A N SER 56 A N ASP 21 A N ASP 24 A O GLY 24 A O GLY 27 A O GLU 100 A O GLU 103 A N ASP 82 A N ASP 85 A N VAL 83 A N VAL 86 A O GLY 119 A O GLY 122 A O HIS 118 A O HIS 121 A N HIS 62 A N HIS 65 A N TYR 63 A N TYR 66 A O ARG 143 A O ARG 146 1 A C2 SRT 182 WRONG HAND 1 A C3 SRT 182 WRONG HAND 1 A A O O HOH HOH 188 189 1.38 1 16.69 2.70 111.00 127.69 A A A N CA C MET MET MET -1 -1 -1 N 1 15.38 2.50 113.10 128.48 A A A N CA C GLY GLY GLY 60 60 60 N 1 16.05 2.30 115.30 131.35 A A A CA CB CG LEU LEU LEU 130 130 130 N 1 6.87 0.90 118.30 125.17 A A A CB CG OD2 ASP ASP ASP 135 135 135 N 1 5.77 0.90 118.30 124.07 A A A CB CG OD2 ASP ASP ASP 176 176 176 N 1 A A NH2 O ARG PHE 17 174 2.14 1_555 3_555 1 A MET -1 -139.51 -122.00 1 A ALA 0 132.77 31.17 1 A MET 1 -172.40 136.59 1 A ASP 21 -144.96 -157.77 1 A LEU 61 61.67 62.99 1 A LYS 107 57.73 19.47 1 A TRP 156 -67.50 97.70 1 A PRO 157 -32.04 0.42 1 A GLN 159 -173.07 72.96 1 A ASP 160 162.95 150.58 1 A PRO 162 -35.46 134.18 30.642 2.35 0.00 0.00 2.35 0.00 -4.70 0.924 0.870 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.28971 0.23029 0.25 0.23326 2.50 54.23 485 9710 9166 5.0 95.17 14.086 0.315 RANDOM 1 overall THROUGHOUT 2.36 1.8 MOLECULAR REPLACEMENT 0.425 0.307 0.80 0.80 1.40 pdb entry 1DZR MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 2.50 54.23 20 1520 10 0 1490 0.015 0.021 1542 0.001 0.020 1354 1.902 1.929 2087 0.905 3.000 3133 5.272 3.000 183 18.518 15.000 262 0.103 0.200 211 0.008 0.020 1751 0.003 0.020 359 0.278 0.300 316 0.256 0.300 1281 0.109 0.500 2 0.152 0.500 85 0.253 0.500 2 0.241 0.300 22 0.321 0.300 64 0.788 0.500 8 0.149 0.500 1 0.642 1.500 917 1.239 2.000 1467 1.796 3.000 625 3.051 4.500 620 0.261 0.314 2.565 9 240 1298 20 99.4 56.26 2.5 40.4 1RTV 9732 9710 2.367 1.8 0.094 0.088 1 6.8 7.3 99.2 0.455 2.5 2.67 4 1298 0.419 6.3 94.4 refinement REFMAC 5.0 data reduction MOSFLM data scaling CCP4 (SCALA) phasing AMoRE RmlC (dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase) crystal structure from Pseudomonas aeruginosa, apo structure 1 N N 2 N N 3 N N The biological assembly is a dimer. A ASN 31 A ASN 34 HELX_P A GLY 40 A GLY 43 1 1 10 A SER 165 A SER 168 HELX_P A GLN 170 A GLN 173 1 2 6 A ALA 173 A ALA 176 HELX_P A ALA 177 A ALA 180 5 3 5 ISOMERASE RmlC, main beta sheet structure, ISOMERASE Q9HU21_PSEAE UNP 1 1 Q9HU21 MKATRLAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSARGVLRGLHYQIRQAQGKLVRATLGEV FDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWPLQD APLLSEKDRQGKAFADADCFP 1 181 1RTV 1 181 Q9HU21 A 1 4 184 1 cloning artifact SER -2 1RTV A Q9HU21 UNP 1 1 cloning artifact MET -1 1RTV A Q9HU21 UNP 2 1 cloning artifact ALA 0 1RTV A Q9HU21 UNP 3 6 2 5 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LYS 2 A LYS 5 A ARG 5 A ARG 8 A ILE 12 A ILE 15 A GLU 15 A GLU 18 A GLN 109 A GLN 112 A ILE 112 A ILE 115 A LYS 71 A LYS 74 A LEU 77 A LEU 80 A TYR 126 A TYR 129 A THR 133 A THR 136 A GLN 47 A GLN 50 A ALA 54 A ALA 57 A VAL 18 A VAL 21 A ASP 21 A ASP 24 A GLY 24 A GLY 27 A PHE 27 A PHE 30 A TRP 97 A TRP 100 A SER 103 A SER 106 A GLU 79 A GLU 82 A ASP 86 A ASP 89 A PHE 116 A PHE 119 A VAL 122 A VAL 125 A LEU 58 A LEU 61 A GLN 64 A GLN 67 A GLU 142 A GLU 145 A CYS 144 A CYS 147 BINDING SITE FOR RESIDUE SRT A 182 A SRT 182 Software 8 A ARG 59 A ARG 62 8 1_555 A HIS 62 A HIS 65 8 1_555 A LYS 71 A LYS 74 8 1_555 A ARG 89 A ARG 92 8 5_555 A HIS 118 A HIS 121 8 1_555 A TYR 131 A TYR 134 8 1_555 A TRP 137 A TRP 140 8 1_555 A GLU 142 A GLU 145 8 1_555 92 P 41 21 2