0.017291
0.000000
0.000000
0.000000
0.017291
0.000000
0.000000
0.000000
0.006187
0.00000
0.00000
0.00000
Dong, C.J.
Naismith, J.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
57.833
57.833
161.620
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H6 O6
150.087
S,R MESO-TARTARIC ACID
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
O
N
305
N
O
N
306
N
C
N
307
S
C
N
308
N
O
N
309
R
C
N
310
N
O
N
311
N
C
N
312
N
O
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
R
C
N
325
N
O
N
326
N
C
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
N
Y
346
N
C
Y
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
C
N
351
N
O
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
N
375
N
O
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
N
N
389
S
C
N
390
N
C
N
391
N
O
N
392
N
C
N
393
N
C
N
394
N
C
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
doub
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
Y
332
N
doub
Y
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
doub
Y
337
N
sing
Y
338
N
sing
N
339
N
sing
Y
340
N
sing
Y
341
N
doub
N
342
N
sing
Y
343
N
doub
N
344
N
sing
Y
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
Y
360
N
doub
Y
361
N
sing
Y
362
N
sing
N
363
N
sing
Y
364
N
doub
N
365
N
sing
Y
366
N
doub
N
367
N
sing
Y
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
TO BE PUBLISHED
0353
RmlC (dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase) crystal structure from Pseudomonas aeruginosa, apo structure
10.2210/pdb1rtv/pdb
pdb_00001rtv
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
110
1
IMAGE PLATE
2000-05-10
MAC Science DIP-2000
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
ENRAF-NONIUS
21082.795
dTDP-4-dehydrorhamnose 3,5-epimerase
5.1.3.13
1
man
polymer
150.087
S,R MESO-TARTARIC ACID
1
syn
non-polymer
18.015
water
20
nat
water
RmlC, dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase
no
no
SMAMKATRLAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSARGVLRGLHYQIRQAQGKLVRATL
GEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWP
LQDAPLLSEKDRQGKAFADADCFP
SMAMKATRLAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSARGVLRGLHYQIRQAQGKLVRATL
GEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWP
LQDAPLLSEKDRQGKAFADADCFP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Pseudomonas
Escherichia
Escherichia coli
sample
rmlc
287
Pseudomonas aeruginosa
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
pET23a(+)
1
3.20
61.60
VAPOR DIFFUSION, SITTING DROP
6.5
0.2M Sodium tartrate, 0.1M MOPS, 8% PEG 8000, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2004-03-02
1
1
2008-04-29
1
2
2011-07-13
1
3
2023-08-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2003-12-10
REL
REL
SRT
S,R MESO-TARTARIC ACID
HOH
water
1DZR
pdb entry 1DZR
PDB
experimental model
TAR
41
2
SRT
SRT
182
A
HOH
1
3
HOH
HOH
183
A
HOH
2
3
HOH
HOH
184
A
HOH
3
3
HOH
HOH
185
A
HOH
4
3
HOH
HOH
186
A
HOH
5
3
HOH
HOH
187
A
HOH
6
3
HOH
HOH
188
A
HOH
7
3
HOH
HOH
189
A
HOH
8
3
HOH
HOH
190
A
HOH
9
3
HOH
HOH
191
A
HOH
10
3
HOH
HOH
192
A
HOH
11
3
HOH
HOH
193
A
HOH
12
3
HOH
HOH
194
A
HOH
13
3
HOH
HOH
195
A
HOH
14
3
HOH
HOH
196
A
HOH
15
3
HOH
HOH
197
A
HOH
16
3
HOH
HOH
198
A
HOH
17
3
HOH
HOH
199
A
HOH
18
3
HOH
HOH
200
A
HOH
19
3
HOH
HOH
201
A
HOH
20
3
HOH
HOH
202
A
SER
-2
n
1
SER
-2
A
MET
-1
n
2
MET
-1
A
ALA
0
n
3
ALA
0
A
MET
1
n
4
MET
1
A
LYS
2
n
5
LYS
2
A
ALA
3
n
6
ALA
3
A
THR
4
n
7
THR
4
A
ARG
5
n
8
ARG
5
A
LEU
6
n
9
LEU
6
A
ALA
7
n
10
ALA
7
A
ILE
8
n
11
ILE
8
A
PRO
9
n
12
PRO
9
A
ASP
10
n
13
ASP
10
A
VAL
11
n
14
VAL
11
A
ILE
12
n
15
ILE
12
A
LEU
13
n
16
LEU
13
A
PHE
14
n
17
PHE
14
A
GLU
15
n
18
GLU
15
A
PRO
16
n
19
PRO
16
A
ARG
17
n
20
ARG
17
A
VAL
18
n
21
VAL
18
A
PHE
19
n
22
PHE
19
A
GLY
20
n
23
GLY
20
A
ASP
21
n
24
ASP
21
A
ASP
22
n
25
ASP
22
A
ARG
23
n
26
ARG
23
A
GLY
24
n
27
GLY
24
A
PHE
25
n
28
PHE
25
A
PHE
26
n
29
PHE
26
A
PHE
27
n
30
PHE
27
A
GLU
28
n
31
GLU
28
A
SER
29
n
32
SER
29
A
TYR
30
n
33
TYR
30
A
ASN
31
n
34
ASN
31
A
GLN
32
n
35
GLN
32
A
ARG
33
n
36
ARG
33
A
ALA
34
n
37
ALA
34
A
PHE
35
n
38
PHE
35
A
GLU
36
n
39
GLU
36
A
GLU
37
n
40
GLU
37
A
ALA
38
n
41
ALA
38
A
CYS
39
n
42
CYS
39
A
GLY
40
n
43
GLY
40
A
HIS
41
n
44
HIS
41
A
PRO
42
n
45
PRO
42
A
VAL
43
n
46
VAL
43
A
SER
44
n
47
SER
44
A
PHE
45
n
48
PHE
45
A
VAL
46
n
49
VAL
46
A
GLN
47
n
50
GLN
47
A
ASP
48
n
51
ASP
48
A
ASN
49
n
52
ASN
49
A
HIS
50
n
53
HIS
50
A
SER
51
n
54
SER
51
A
ARG
52
n
55
ARG
52
A
SER
53
n
56
SER
53
A
ALA
54
n
57
ALA
54
A
ARG
55
n
58
ARG
55
A
GLY
56
n
59
GLY
56
A
VAL
57
n
60
VAL
57
A
LEU
58
n
61
LEU
58
A
ARG
59
n
62
ARG
59
A
GLY
60
n
63
GLY
60
A
LEU
61
n
64
LEU
61
A
HIS
62
n
65
HIS
62
A
TYR
63
n
66
TYR
63
A
GLN
64
n
67
GLN
64
A
ILE
65
n
68
ILE
65
A
ARG
66
n
69
ARG
66
A
GLN
67
n
70
GLN
67
A
ALA
68
n
71
ALA
68
A
GLN
69
n
72
GLN
69
A
GLY
70
n
73
GLY
70
A
LYS
71
n
74
LYS
71
A
LEU
72
n
75
LEU
72
A
VAL
73
n
76
VAL
73
A
ARG
74
n
77
ARG
74
A
ALA
75
n
78
ALA
75
A
THR
76
n
79
THR
76
A
LEU
77
n
80
LEU
77
A
GLY
78
n
81
GLY
78
A
GLU
79
n
82
GLU
79
A
VAL
80
n
83
VAL
80
A
PHE
81
n
84
PHE
81
A
ASP
82
n
85
ASP
82
A
VAL
83
n
86
VAL
83
A
ALA
84
n
87
ALA
84
A
VAL
85
n
88
VAL
85
A
ASP
86
n
89
ASP
86
A
LEU
87
n
90
LEU
87
A
ARG
88
n
91
ARG
88
A
ARG
89
n
92
ARG
89
A
GLY
90
n
93
GLY
90
A
SER
91
n
94
SER
91
A
PRO
92
n
95
PRO
92
A
THR
93
n
96
THR
93
A
PHE
94
n
97
PHE
94
A
GLY
95
n
98
GLY
95
A
GLN
96
n
99
GLN
96
A
TRP
97
n
100
TRP
97
A
VAL
98
n
101
VAL
98
A
GLY
99
n
102
GLY
99
A
GLU
100
n
103
GLU
100
A
ARG
101
n
104
ARG
101
A
LEU
102
n
105
LEU
102
A
SER
103
n
106
SER
103
A
ALA
104
n
107
ALA
104
A
GLU
105
n
108
GLU
105
A
ASN
106
n
109
ASN
106
A
LYS
107
n
110
LYS
107
A
ARG
108
n
111
ARG
108
A
GLN
109
n
112
GLN
109
A
MET
110
n
113
MET
110
A
TRP
111
n
114
TRP
111
A
ILE
112
n
115
ILE
112
A
PRO
113
n
116
PRO
113
A
ALA
114
n
117
ALA
114
A
GLY
115
n
118
GLY
115
A
PHE
116
n
119
PHE
116
A
ALA
117
n
120
ALA
117
A
HIS
118
n
121
HIS
118
A
GLY
119
n
122
GLY
119
A
PHE
120
n
123
PHE
120
A
VAL
121
n
124
VAL
121
A
VAL
122
n
125
VAL
122
A
LEU
123
n
126
LEU
123
A
SER
124
n
127
SER
124
A
GLU
125
n
128
GLU
125
A
TYR
126
n
129
TYR
126
A
ALA
127
n
130
ALA
127
A
GLU
128
n
131
GLU
128
A
PHE
129
n
132
PHE
129
A
LEU
130
n
133
LEU
130
A
TYR
131
n
134
TYR
131
A
LYS
132
n
135
LYS
132
A
THR
133
n
136
THR
133
A
THR
134
n
137
THR
134
A
ASP
135
n
138
ASP
135
A
PHE
136
n
139
PHE
136
A
TRP
137
n
140
TRP
137
A
ALA
138
n
141
ALA
138
A
PRO
139
n
142
PRO
139
A
GLU
140
n
143
GLU
140
A
HIS
141
n
144
HIS
141
A
GLU
142
n
145
GLU
142
A
ARG
143
n
146
ARG
143
A
CYS
144
n
147
CYS
144
A
ILE
145
n
148
ILE
145
A
VAL
146
n
149
VAL
146
A
TRP
147
n
150
TRP
147
A
ASN
148
n
151
ASN
148
A
ASP
149
n
152
ASP
149
A
PRO
150
n
153
PRO
150
A
GLU
151
n
154
GLU
151
A
LEU
152
n
155
LEU
152
A
LYS
153
n
156
LYS
153
A
ILE
154
n
157
ILE
154
A
ASP
155
n
158
ASP
155
A
TRP
156
n
159
TRP
156
A
PRO
157
n
160
PRO
157
A
LEU
158
n
161
LEU
158
A
GLN
159
n
162
GLN
159
A
ASP
160
n
163
ASP
160
A
ALA
161
n
164
ALA
161
A
PRO
162
n
165
PRO
162
A
LEU
163
n
166
LEU
163
A
LEU
164
n
167
LEU
164
A
SER
165
n
168
SER
165
A
GLU
166
n
169
GLU
166
A
LYS
167
n
170
LYS
167
A
ASP
168
n
171
ASP
168
A
ARG
169
n
172
ARG
169
A
GLN
170
n
173
GLN
170
A
GLY
171
n
174
GLY
171
A
LYS
172
n
175
LYS
172
A
ALA
173
n
176
ALA
173
A
PHE
174
n
177
PHE
174
A
ALA
175
n
178
ALA
175
A
ASP
176
n
179
ASP
176
A
ALA
177
n
180
ALA
177
A
ASP
178
n
181
ASP
178
A
CYS
179
n
182
CYS
179
A
PHE
180
n
183
PHE
180
A
PRO
181
n
184
PRO
181
A
1.2795
-0.1038
0.1575
2.0127
1.7977
6.9689
0.1131
0.0928
-0.0378
-0.0978
-0.1822
0.1435
0.2245
-0.6409
0.0691
0.0107
0.0008
-0.0251
0.0345
0.0092
0.0763
refined
4.4820
41.2220
28.7440
X-RAY DIFFRACTION
A
1
A
4
A
184
C
2
X-RAY DIFFRACTION
1
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
4_454
y-1/2,-x+1/2,z-1/4
crystal symmetry operation
-28.9165000000
28.9165000000
-40.4050000000
A
N
LYS
2
A
N
LYS
5
A
O
GLU
15
A
O
GLU
18
A
N
ILE
12
A
N
ILE
15
A
O
TRP
111
A
O
TRP
114
A
O
ILE
112
A
O
ILE
115
A
N
LYS
71
A
N
LYS
74
A
N
LEU
77
A
N
LEU
80
A
O
GLU
128
A
O
GLU
131
A
O
ALA
127
A
O
ALA
130
A
N
SER
53
A
N
SER
56
A
N
ASP
21
A
N
ASP
24
A
O
GLY
24
A
O
GLY
27
A
O
GLU
100
A
O
GLU
103
A
N
ASP
82
A
N
ASP
85
A
N
VAL
83
A
N
VAL
86
A
O
GLY
119
A
O
GLY
122
A
O
HIS
118
A
O
HIS
121
A
N
HIS
62
A
N
HIS
65
A
N
TYR
63
A
N
TYR
66
A
O
ARG
143
A
O
ARG
146
1
A
C2
SRT
182
WRONG HAND
1
A
C3
SRT
182
WRONG HAND
1
A
A
O
O
HOH
HOH
188
189
1.38
1
16.69
2.70
111.00
127.69
A
A
A
N
CA
C
MET
MET
MET
-1
-1
-1
N
1
15.38
2.50
113.10
128.48
A
A
A
N
CA
C
GLY
GLY
GLY
60
60
60
N
1
16.05
2.30
115.30
131.35
A
A
A
CA
CB
CG
LEU
LEU
LEU
130
130
130
N
1
6.87
0.90
118.30
125.17
A
A
A
CB
CG
OD2
ASP
ASP
ASP
135
135
135
N
1
5.77
0.90
118.30
124.07
A
A
A
CB
CG
OD2
ASP
ASP
ASP
176
176
176
N
1
A
A
NH2
O
ARG
PHE
17
174
2.14
1_555
3_555
1
A
MET
-1
-139.51
-122.00
1
A
ALA
0
132.77
31.17
1
A
MET
1
-172.40
136.59
1
A
ASP
21
-144.96
-157.77
1
A
LEU
61
61.67
62.99
1
A
LYS
107
57.73
19.47
1
A
TRP
156
-67.50
97.70
1
A
PRO
157
-32.04
0.42
1
A
GLN
159
-173.07
72.96
1
A
ASP
160
162.95
150.58
1
A
PRO
162
-35.46
134.18
30.642
2.35
0.00
0.00
2.35
0.00
-4.70
0.924
0.870
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.28971
0.23029
0.25
0.23326
2.50
54.23
485
9710
9166
5.0
95.17
14.086
0.315
RANDOM
1
overall
THROUGHOUT
2.36
1.8
MOLECULAR REPLACEMENT
0.425
0.307
0.80
0.80
1.40
pdb entry 1DZR
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.50
54.23
20
1520
10
0
1490
0.015
0.021
1542
0.001
0.020
1354
1.902
1.929
2087
0.905
3.000
3133
5.272
3.000
183
18.518
15.000
262
0.103
0.200
211
0.008
0.020
1751
0.003
0.020
359
0.278
0.300
316
0.256
0.300
1281
0.109
0.500
2
0.152
0.500
85
0.253
0.500
2
0.241
0.300
22
0.321
0.300
64
0.788
0.500
8
0.149
0.500
1
0.642
1.500
917
1.239
2.000
1467
1.796
3.000
625
3.051
4.500
620
0.261
0.314
2.565
9
240
1298
20
99.4
56.26
2.5
40.4
1RTV
9732
9710
2.367
1.8
0.094
0.088
1
6.8
7.3
99.2
0.455
2.5
2.67
4
1298
0.419
6.3
94.4
refinement
REFMAC
5.0
data reduction
MOSFLM
data scaling
CCP4
(SCALA)
phasing
AMoRE
RmlC (dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase) crystal structure from Pseudomonas aeruginosa, apo structure
1
N
N
2
N
N
3
N
N
The biological assembly is a dimer.
A
ASN
31
A
ASN
34
HELX_P
A
GLY
40
A
GLY
43
1
1
10
A
SER
165
A
SER
168
HELX_P
A
GLN
170
A
GLN
173
1
2
6
A
ALA
173
A
ALA
176
HELX_P
A
ALA
177
A
ALA
180
5
3
5
ISOMERASE
RmlC, main beta sheet structure, ISOMERASE
Q9HU21_PSEAE
UNP
1
1
Q9HU21
MKATRLAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSARGVLRGLHYQIRQAQGKLVRATLGEV
FDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWPLQD
APLLSEKDRQGKAFADADCFP
1
181
1RTV
1
181
Q9HU21
A
1
4
184
1
cloning artifact
SER
-2
1RTV
A
Q9HU21
UNP
1
1
cloning artifact
MET
-1
1RTV
A
Q9HU21
UNP
2
1
cloning artifact
ALA
0
1RTV
A
Q9HU21
UNP
3
6
2
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LYS
2
A
LYS
5
A
ARG
5
A
ARG
8
A
ILE
12
A
ILE
15
A
GLU
15
A
GLU
18
A
GLN
109
A
GLN
112
A
ILE
112
A
ILE
115
A
LYS
71
A
LYS
74
A
LEU
77
A
LEU
80
A
TYR
126
A
TYR
129
A
THR
133
A
THR
136
A
GLN
47
A
GLN
50
A
ALA
54
A
ALA
57
A
VAL
18
A
VAL
21
A
ASP
21
A
ASP
24
A
GLY
24
A
GLY
27
A
PHE
27
A
PHE
30
A
TRP
97
A
TRP
100
A
SER
103
A
SER
106
A
GLU
79
A
GLU
82
A
ASP
86
A
ASP
89
A
PHE
116
A
PHE
119
A
VAL
122
A
VAL
125
A
LEU
58
A
LEU
61
A
GLN
64
A
GLN
67
A
GLU
142
A
GLU
145
A
CYS
144
A
CYS
147
BINDING SITE FOR RESIDUE SRT A 182
A
SRT
182
Software
8
A
ARG
59
A
ARG
62
8
1_555
A
HIS
62
A
HIS
65
8
1_555
A
LYS
71
A
LYS
74
8
1_555
A
ARG
89
A
ARG
92
8
5_555
A
HIS
118
A
HIS
121
8
1_555
A
TYR
131
A
TYR
134
8
1_555
A
TRP
137
A
TRP
140
8
1_555
A
GLU
142
A
GLU
145
8
1_555
92
P 41 21 2