0.025167 0.014530 0.000000 0.000000 0.029061 0.000000 0.000000 0.000000 0.017081 0.00000 0.00000 0.00000 Portmann, S. Usman, N. Egli, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 39.734 39.734 58.545 C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C N 14 N N N 15 N C N 16 N O N 17 N N N 18 N C N 19 N N N 20 N C N 21 N C N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N O N 37 N P N 38 N O N 39 N O N 40 N O N 41 N C N 42 R C N 43 N O N 44 S C N 45 N O N 46 R C N 47 N O N 48 R C Y 49 N N Y 50 N C Y 51 N N Y 52 N C N 53 N C N 54 N O N 55 N N N 56 N C N 57 N N N 58 N N Y 59 N C N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N doub N 28 N sing N 29 N doub N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N doub N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N doub N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing Y 61 N sing Y 62 N sing Y 63 N doub N 64 N sing Y 65 N sing N 66 N sing Y 67 N doub N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing US Biochemistry BICHAW 0033 0006-2960 34 7569 7575 10.1021/bi00023a002 7779802 The crystal structure of r(CCCCGGGG) in two distinct lattices. 1995 10.2210/pdb1rxa/pdb pdb_00001rxa 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 ROOM TEMPERATURE 1 IMAGE PLATE MARRESEARCH x-ray 1 1.0 ROTATING ANODE ENRAF-NONIUS 2556.593 RNA (5'-R(*CP*CP*CP*CP*GP*GP*GP*G)-3') 1 syn polymer no no CCCCGGGG CCCCGGGG A polyribonucleotide n n n n n n n n 2.61 52.86 VAPOR DIFFUSION 4.50 pH 4.50, VAPOR DIFFUSION WATER 1 MPD 1 NA CACODYLATE 1 CACL2 1 WATER 2 MPD 2 5.126 1 19 A 1 A 8 -2.555 A_C1:G8_A 1 6.802 -0.593 -0.126 -0.398 13.552 1 19 A 2 A 7 -9.032 A_C2:G7_A 2 -5.985 -0.173 -0.246 -0.259 -1.182 1 A 3 A 6 9.515 A_C3:G6_A 3 -7.685 0.632 0.550 0.095 -7.877 1 19 A 4 A 5 -4.138 A_C4:G5_A 4 -7.021 -0.154 0.553 -0.381 7.877 1 19 A 5 A 4 -4.138 A_G5:C4_A 5 -7.021 0.154 0.553 -0.381 1.182 1 A 6 A 3 9.515 A_G6:C3_A 6 -7.685 -0.632 0.550 0.095 -13.552 1 19 A 7 A 2 -9.032 A_G7:C2_A 7 -5.985 0.173 -0.246 -0.259 -5.126 1 19 A 8 A 1 -2.554 A_G8:C1_A 8 6.802 0.593 -0.126 -0.398 2.948 37.955 A A 1 2 4.876 A A 8 7 3.107 3.168 -0.183 -1.887 AA_C1C2:G7G8_AA 1 -0.576 0.886 37.823 -3.276 0.213 3.301 40.759 A A 2 3 4.667 A A 7 6 3.573 3.241 0.706 -2.204 AA_C2C3:G6G7_AA 2 -4.467 6.432 40.400 -3.542 -1.534 1.573 26.802 A A 3 4 30.976 A A 6 5 3.125 13.700 -0.842 -2.188 AA_C3C4:G5G6_AA 3 0.673 -1.522 23.081 -7.464 1.951 2.819 37.313 A A 4 5 -0.187 A A 5 4 2.814 -0.120 0.000 -1.784 AA_C4G5:C4G5_AA 4 0.000 0.000 37.313 -2.774 0.000 1.573 26.802 A A 5 6 30.976 A A 4 3 3.125 13.700 0.842 -2.188 AA_G5G6:C3C4_AA 5 -0.673 1.522 23.081 -7.464 -1.951 3.301 40.759 A A 6 7 4.667 A A 3 2 3.573 3.241 -0.706 -2.204 AA_G6G7:C2C3_AA 6 4.467 -6.432 40.400 -3.542 1.534 2.948 37.955 A A 7 8 4.876 A A 2 1 3.107 3.168 0.183 -1.887 AA_G7G8:C1C2_AA 7 0.576 -0.886 37.823 -3.276 -0.213 chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Data collection Database references 1 0 1996-10-20 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y NDB 1995-05-05 REL C 1 n 1 C 1 A C 2 n 2 C 2 A C 3 n 3 C 3 A C 4 n 4 C 4 A G 5 n 5 G 5 A G 6 n 6 G 6 A G 7 n 7 G 7 A G 8 n 8 G 8 A author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 11_655 -x+y+1,y,-z+1/2 crystal symmetry operation 39.7340000000 0.0000000000 29.2725000000 1 16.41 1.60 113.70 130.11 A A A C2' C3' O3' C C C 1 1 1 N 1 7.51 1.00 102.60 110.11 A A A C4' C3' C2' C C C 1 1 1 N 1 19.23 2.90 113.30 132.53 A A A C3' C2' O2' C C C 1 1 1 N 1 3.30 0.50 119.90 123.20 A A A C2 N3 C4 C C C 1 1 1 N 1 -4.46 0.40 121.90 117.44 A A A N3 C4 C5 C C C 1 1 1 N 1 3.31 0.50 117.40 120.71 A A A C4 C5 C6 C C C 1 1 1 N 1 7.85 0.60 118.90 126.75 A A A N1 C2 O2 C C C 1 1 1 N 1 -4.66 0.70 121.90 117.24 A A A N3 C2 O2 C C C 1 1 1 N 1 -4.83 0.70 118.00 113.17 A A A N3 C4 N4 C C C 1 1 1 N 1 9.18 0.70 120.20 129.38 A A A C5 C4 N4 C C C 1 1 1 N 1 -6.78 1.10 118.80 112.02 A A A C2 N1 C1' C C C 1 1 1 N 1 8.47 1.20 110.70 119.17 A A A O5' P OP1 C C C 2 2 2 N 1 -7.55 0.90 105.70 98.15 A A A O5' P OP2 C C C 2 2 2 N 1 -16.38 1.60 120.90 104.52 A A A P O5' C5' C C C 2 2 2 N 1 -9.20 1.00 104.00 94.80 A A A O4' C4' C3' C C C 2 2 2 N 1 -14.91 1.20 109.10 94.19 A A A C5' C4' O4' C C C 2 2 2 N 1 -5.82 0.70 101.30 95.48 A A A C3' C2' C1' C C C 2 2 2 N 1 4.39 0.50 119.90 124.29 A A A C2 N3 C4 C C C 2 2 2 N 1 -4.29 0.40 121.90 117.61 A A A N3 C4 C5 C C C 2 2 2 N 1 6.54 0.60 118.90 125.44 A A A N1 C2 O2 C C C 2 2 2 N 1 5.58 0.70 120.20 125.78 A A A C5 C4 N4 C C C 2 2 2 N 1 13.88 1.20 119.70 133.58 A A A C3' O3' P C C C 2 2 3 Y 1 -15.65 0.90 105.70 90.05 A A A O5' P OP1 C C C 3 3 3 N 1 15.93 1.20 110.70 126.63 A A A O5' P OP2 C C C 3 3 3 N 1 -9.92 1.60 120.90 110.98 A A A P O5' C5' C C C 3 3 3 N 1 9.60 1.60 116.00 125.60 A A A C5' C4' C3' C C C 3 3 3 N 1 5.27 0.80 109.90 115.17 A A A C1' O4' C4' C C C 3 3 3 N 1 10.28 1.60 113.70 123.98 A A A C2' C3' O3' C C C 3 3 3 N 1 7.88 1.00 102.60 110.48 A A A C4' C3' C2' C C C 3 3 3 N 1 -8.46 1.00 105.80 97.34 A A A O4' C1' C2' C C C 3 3 3 N 1 9.69 0.70 108.50 118.19 A A A O4' C1' N1 C C C 3 3 3 N 1 6.58 0.50 119.90 126.48 A A A C2 N3 C4 C C C 3 3 3 N 1 -6.16 0.40 121.90 115.74 A A A N3 C4 C5 C C C 3 3 3 N 1 4.84 0.50 121.00 125.84 A A A C5 C6 N1 C C C 3 3 3 N 1 4.08 0.60 118.90 122.98 A A A N1 C2 O2 C C C 3 3 3 N 1 7.92 0.70 118.00 125.92 A A A N3 C4 N4 C C C 3 3 3 N 1 10.58 1.20 119.70 130.28 A A A C3' O3' P C C C 3 3 4 Y 1 11.92 1.90 104.00 115.92 A A A O3' P O5' C C C 3 4 4 Y 1 7.50 1.10 110.50 118.00 A A A O3' P OP2 C C C 3 4 4 Y 1 -14.25 2.20 105.20 90.95 A A A O3' P OP1 C C C 3 4 4 Y 1 -13.02 0.90 105.70 92.68 A A A O5' P OP1 C C C 4 4 4 N 1 -7.19 0.80 109.40 102.21 A A A O5' C5' C4' C C C 4 4 4 N 1 -10.98 1.00 104.00 93.02 A A A O4' C4' C3' C C C 4 4 4 N 1 11.70 1.60 116.00 127.70 A A A C5' C4' C3' C C C 4 4 4 N 1 -8.92 0.80 108.20 99.28 A A A O4' C1' N1 C C C 4 4 4 N 1 4.61 0.50 119.90 124.51 A A A C2 N3 C4 C C C 4 4 4 N 1 3.69 0.60 118.90 122.59 A A A N1 C2 O2 C C C 4 4 4 N 1 -11.94 1.20 119.70 107.76 A A A C3' O3' P C C G 4 4 5 Y 1 11.90 1.90 104.00 115.90 A A A O3' P O5' C G G 4 5 5 Y 1 -15.01 2.20 105.20 90.19 A A A O3' P OP1 C G G 4 5 5 Y 1 -9.50 0.90 105.70 96.20 A A A O5' P OP1 G G G 5 5 5 N 1 -19.97 0.80 109.40 89.43 A A A O5' C5' C4' G G G 5 5 5 N 1 -10.86 1.60 120.90 110.04 A A A P O5' C5' G G G 5 5 5 N 1 -6.03 1.00 104.00 97.97 A A A O4' C4' C3' G G G 5 5 5 N 1 -12.26 1.20 109.10 96.84 A A A C5' C4' O4' G G G 5 5 5 N 1 13.09 1.60 113.70 126.79 A A A C2' C3' O3' G G G 5 5 5 N 1 -5.41 0.60 125.10 119.69 A A A C6 N1 C2 G G G 5 5 5 N 1 5.53 0.50 111.50 117.03 A A A C5 C6 N1 G G G 5 5 5 N 1 5.91 0.90 116.20 122.11 A A A N1 C2 N2 G G G 5 5 5 N 1 -9.50 0.70 119.90 110.40 A A A N3 C2 N2 G G G 5 5 5 N 1 -5.50 0.60 128.60 123.10 A A A C5 C6 O6 G G G 5 5 5 N 1 12.77 1.90 104.00 116.77 A A A O3' P O5' G G G 5 6 6 Y 1 -6.12 0.80 109.40 103.28 A A A O5' C5' C4' G G G 6 6 6 N 1 -6.82 1.00 104.00 97.18 A A A O4' C4' C3' G G G 6 6 6 N 1 -7.47 1.20 109.10 101.63 A A A C5' C4' O4' G G G 6 6 6 N 1 -7.67 0.70 109.70 102.03 A A A C1' O4' C4' G G G 6 6 6 N 1 -7.16 0.70 101.30 94.14 A A A C3' C2' C1' G G G 6 6 6 N 1 6.65 0.90 107.60 114.25 A A A O4' C1' C2' G G G 6 6 6 N 1 -10.57 0.80 108.20 97.63 A A A O4' C1' N9 G G G 6 6 6 N 1 -5.55 0.60 125.10 119.55 A A A C6 N1 C2 G G G 6 6 6 N 1 8.04 0.60 123.90 131.94 A A A N1 C2 N3 G G G 6 6 6 N 1 -7.41 0.50 111.90 104.49 A A A C2 N3 C4 G G G 6 6 6 N 1 6.11 0.50 111.50 117.61 A A A C5 C6 N1 G G G 6 6 6 N 1 -11.24 0.70 119.90 108.66 A A A N3 C2 N2 G G G 6 6 6 N 1 -4.69 0.60 128.60 123.91 A A A C5 C6 O6 G G G 6 6 6 N 1 18.50 1.50 119.60 138.10 A A A OP1 P OP2 G G G 7 7 7 N 1 -8.68 0.90 105.70 97.02 A A A O5' P OP1 G G G 7 7 7 N 1 -6.88 0.80 109.40 102.52 A A A O5' C5' C4' G G G 7 7 7 N 1 -10.42 1.10 112.00 101.58 A A A N9 C1' C2' G G G 7 7 7 N 1 5.74 0.70 108.50 114.24 A A A O4' C1' N9 G G G 7 7 7 N 1 -20.85 3.00 110.60 89.75 A A A C1' C2' O2' G G G 7 7 7 N 1 -5.67 0.60 125.10 119.43 A A A C6 N1 C2 G G G 7 7 7 N 1 8.15 0.60 123.90 132.05 A A A N1 C2 N3 G G G 7 7 7 N 1 -8.03 0.50 111.90 103.87 A A A C2 N3 C4 G G G 7 7 7 N 1 2.51 0.40 110.80 113.31 A A A C4 C5 N7 G G G 7 7 7 N 1 -4.19 0.50 104.30 100.11 A A A C5 N7 C8 G G G 7 7 7 N 1 3.14 0.50 113.10 116.24 A A A N7 C8 N9 G G G 7 7 7 N 1 -3.48 0.40 106.40 102.92 A A A C8 N9 C4 G G G 7 7 7 N 1 -4.59 0.60 130.40 125.81 A A A C6 C5 N7 G G G 7 7 7 N 1 -7.56 0.70 119.90 112.34 A A A N3 C2 N2 G G G 7 7 7 N 1 -4.87 0.60 128.60 123.73 A A A C5 C6 O6 G G G 7 7 7 N 1 -11.38 1.30 127.00 115.62 A A A C8 N9 C1' G G G 7 7 7 N 1 14.96 1.30 126.50 141.46 A A A C4 N9 C1' G G G 7 7 7 N 1 22.17 1.90 111.70 133.87 A A A O5' C5' C4' G G G 8 8 8 N 1 7.57 0.80 106.10 113.67 A A A O4' C4' C3' G G G 8 8 8 N 1 16.70 1.60 116.00 132.70 A A A C5' C4' C3' G G G 8 8 8 N 1 -22.00 1.20 109.10 87.10 A A A C5' C4' O4' G G G 8 8 8 N 1 17.85 2.00 113.00 130.85 A A A C4' C3' O3' G G G 8 8 8 N 1 8.67 0.80 101.50 110.17 A A A C3' C2' C1' G G G 8 8 8 N 1 -13.00 0.80 108.20 95.20 A A A O4' C1' N9 G G G 8 8 8 N 1 -11.20 0.60 125.10 113.90 A A A C6 N1 C2 G G G 8 8 8 N 1 10.05 0.60 123.90 133.95 A A A N1 C2 N3 G G G 8 8 8 N 1 -3.94 0.50 111.90 107.96 A A A C2 N3 C4 G G G 8 8 8 N 1 6.98 0.50 111.50 118.48 A A A C5 C6 N1 G G G 8 8 8 N 1 -2.59 0.40 106.40 103.81 A A A C8 N9 C4 G G G 8 8 8 N 1 -6.83 0.90 116.20 109.37 A A A N1 C2 N2 G G G 8 8 8 N 1 -4.18 0.60 119.90 115.72 A A A N1 C6 O6 G G G 8 8 8 N 1 A A C3' C2' C C 1 1 -0.118 0.011 1.523 1.405 N 1 A A C2' C1' C C 1 1 0.071 0.011 1.529 1.600 N 1 A A P O5' C C 2 2 0.066 0.010 1.593 1.659 N 1 A A C5' C4' C C 2 2 -0.064 0.007 1.508 1.444 N 1 A A O3' C3' C C 2 2 -0.094 0.014 1.417 1.323 N 1 A A C2' O2' C C 2 2 -0.086 0.013 1.412 1.326 N 1 A A N3 C4 C C 2 2 0.045 0.007 1.335 1.380 N 1 A A P O5' C C 3 3 0.070 0.010 1.593 1.663 N 1 A A C2' C1' C C 3 3 0.108 0.011 1.529 1.637 N 1 A A O4' C1' C C 3 3 0.087 0.012 1.415 1.502 N 1 A A C4 N4 C C 3 3 0.057 0.009 1.335 1.392 N 1 A A C5' C4' C C 4 4 0.078 0.012 1.509 1.587 N 1 A A C2' C1' G G 5 5 0.107 0.011 1.529 1.636 N 1 A A C6 N1 G G 5 5 -0.069 0.007 1.391 1.322 N 1 A A N7 C8 G G 5 5 0.042 0.006 1.305 1.347 N 1 A A C8 N9 G G 5 5 -0.065 0.007 1.374 1.309 N 1 A A C2 N2 G G 5 5 -0.081 0.010 1.341 1.260 N 1 A A C6 N1 G G 6 6 -0.100 0.007 1.391 1.291 N 1 A A C2 N2 G G 6 6 -0.099 0.010 1.341 1.242 N 1 A A C1' N9 G G 7 7 -0.105 0.014 1.464 1.359 N 1 A A C6 N1 G G 7 7 -0.072 0.007 1.391 1.319 N 1 A A C5 N7 G G 7 7 -0.071 0.006 1.388 1.317 N 1 A A N7 C8 G G 7 7 0.041 0.006 1.305 1.346 N 1 A A C2 N2 G G 7 7 -0.079 0.010 1.341 1.262 N 1 A A P O5' G G 8 8 0.074 0.010 1.593 1.667 N 1 A A O5' C5' G G 8 8 -0.063 0.009 1.420 1.357 N 1 A A O3' C3' G G 8 8 0.166 0.012 1.427 1.593 N 1 A A C2' O2' G G 8 8 0.192 0.010 1.420 1.612 N 1 A A C6 N1 G G 8 8 -0.044 0.007 1.391 1.347 N 1 A A C5 N7 G G 8 8 -0.053 0.006 1.388 1.335 N 1 A A C2 N2 G G 8 8 -0.115 0.010 1.341 1.226 N 0.2500000 0.2500000 2.900 10.000 710 1 2.000 TR isotropic TR isotropic 2.900 10.000 0 169 0 169 0 fix fix refinement X-PLOR CRYSTAL STRUCTURE OF R(CCCCGGGG) IN TWO DISTINCT LATTICES 1 N N hydrog WATSON-CRICK A C 1 A N3 C 1 1_555 A G 8 A N1 G 8 11_655 hydrog WATSON-CRICK A C 1 A N4 C 1 1_555 A G 8 A O6 G 8 11_655 hydrog WATSON-CRICK A C 1 A O2 C 1 1_555 A G 8 A N2 G 8 11_655 hydrog WATSON-CRICK A C 2 A N3 C 2 1_555 A G 7 A N1 G 7 11_655 hydrog WATSON-CRICK A C 2 A N4 C 2 1_555 A G 7 A O6 G 7 11_655 hydrog WATSON-CRICK A C 2 A O2 C 2 1_555 A G 7 A N2 G 7 11_655 hydrog C-G PAIR A C 3 A O2 C 3 1_555 A G 6 A N1 G 6 11_655 hydrog WATSON-CRICK A C 4 A N3 C 4 1_555 A G 5 A N1 G 5 11_655 hydrog WATSON-CRICK A C 4 A N4 C 4 1_555 A G 5 A O6 G 5 11_655 hydrog WATSON-CRICK A C 4 A O2 C 4 1_555 A G 5 A N2 G 5 11_655 hydrog WATSON-CRICK A G 5 A N1 G 5 1_555 A C 4 A N3 C 4 11_655 hydrog WATSON-CRICK A G 5 A N2 G 5 1_555 A C 4 A O2 C 4 11_655 hydrog WATSON-CRICK A G 5 A O6 G 5 1_555 A C 4 A N4 C 4 11_655 hydrog G-C PAIR A G 6 A N1 G 6 1_555 A C 3 A O2 C 3 11_655 hydrog WATSON-CRICK A G 7 A N1 G 7 1_555 A C 2 A N3 C 2 11_655 hydrog WATSON-CRICK A G 7 A N2 G 7 1_555 A C 2 A O2 C 2 11_655 hydrog WATSON-CRICK A G 7 A O6 G 7 1_555 A C 2 A N4 C 2 11_655 hydrog WATSON-CRICK A G 8 A N1 G 8 1_555 A C 1 A N3 C 1 11_655 hydrog WATSON-CRICK A G 8 A N2 G 8 1_555 A C 1 A O2 C 1 11_655 hydrog WATSON-CRICK A G 8 A O6 G 8 1_555 A C 1 A N4 C 1 11_655 RNA A-RNA, DOUBLE HELIX, RNA 1RXA PDB 1 1RXA 1 8 1RXA 1 8 1RXA A 1 1 8 178 P 61 2 2