data_1S1K # _entry.id 1S1K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1S1K pdb_00001s1k 10.2210/pdb1s1k/pdb NDB BD0068 ? ? RCSB RCSB021250 ? ? WWPDB D_1000021250 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1P4Z _pdbx_database_related.details 'Unmodified ACT strand' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1S1K _pdbx_database_status.recvd_initial_deposition_date 2004-01-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hays, F.A.' 1 'Watson, J.' 2 'Ho, P.S.' 3 # _citation.id primary _citation.title 'Influence of minor groove substituents on the structure of DNA holliday junctions.' _citation.journal_abbrev Biochemistry _citation.journal_volume 43 _citation.page_first 9813 _citation.page_last 9822 _citation.year 2004 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15274635 _citation.pdbx_database_id_DOI 10.1021/bi049461d # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hays, F.A.' 1 ? primary 'Jones, Z.J.' 2 ? primary 'Ho, P.S.' 3 ? # _cell.entry_id 1S1K _cell.length_a 32.957 _cell.length_b 32.957 _cell.length_c 88.556 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S1K _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*CP*(1AP)P*GP*TP*AP*CP*TP*GP*G)-3'" 3060.019 1 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 water nat water 18.015 40 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(1AP)(DG)(DT)(DA)(DC)(DT)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCAGTACTGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 1AP n 1 4 DG n 1 5 DT n 1 6 DA n 1 7 DC n 1 8 DT n 1 9 DG n 1 10 DG n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1S1K _struct_ref.pdbx_db_accession 1S1K _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1S1K _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 10 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1S1K _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 10 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1AP 'DNA linking' n '2,6-DIAMINOPURINE NUCLEOTIDE' ? 'C10 H15 N6 O6 P' 346.236 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # _exptl.entry_id 1S1K _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 38.5 _exptl_crystal.description ? _exptl_crystal.density_Matthews 2.02 _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.50 _exptl_crystal_grow.pdbx_details '5mM TRIS(HCl), 23mM CaAcetate, 16% MPD, .6mM DNA against 28% MPD at RT, pH 7.50, VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'TRIS(HCl)' ? ? ? 1 2 1 CaAcetate ? ? ? 1 3 1 '16% MPD' ? ? ? 1 4 1 DNA ? ? ? 1 5 ? water ? ? ? 1 6 ? '28% MPD' ? ? ? 1 7 ? 'TRIS(HCl)' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 103.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2002-01-08 _diffrn_detector.details 'BENT CONICAL SI-MIRROR (RH COATING)' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'BENT GE(111) MONOCHROMATOR' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 14-BM-C' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 14-BM-C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9 # _reflns.entry_id 1S1K _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 17.50 _reflns.d_resolution_high 1.850 _reflns.number_obs 2528 _reflns.number_all 2528 _reflns.percent_possible_obs 96.3 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 8.80 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.85 _reflns_shell.d_res_low 1.92 _reflns_shell.percent_possible_all 72.2 _reflns_shell.Rmerge_I_obs 0.245 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.980 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1S1K _refine.ls_number_reflns_obs 2413 _refine.ls_number_reflns_all 2528 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF 29235.77 _refine.pdbx_data_cutoff_low_absF 0.0 _refine.pdbx_data_cutoff_high_rms_absF 29235.77 _refine.ls_d_res_low 17.49 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 93.9 _refine.ls_R_factor_obs 0.232 _refine.ls_R_factor_all 0.253 _refine.ls_R_factor_R_work 0.232 _refine.ls_R_factor_R_free 0.258 _refine.ls_R_factor_R_free_error 0.017 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.400 _refine.ls_number_reflns_R_free 228 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 14.0 _refine.aniso_B[1][1] 3.22 _refine.aniso_B[2][2] 3.22 _refine.aniso_B[3][3] -6.45 _refine.aniso_B[1][2] 3.51 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 1P4Z _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values CNS _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1S1K _refine_analyze.Luzzati_coordinate_error_obs 0.25 _refine_analyze.Luzzati_sigma_a_obs 0.26 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.26 _refine_analyze.Luzzati_sigma_a_free 0.33 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 203 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 40 _refine_hist.number_atoms_total 246 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 17.49 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.067 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 6.20 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.60 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 5.46 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 2.02 _refine_ls_shell.number_reflns_R_work 287 _refine_ls_shell.R_factor_R_work 0.308 _refine_ls_shell.percent_reflns_obs 80.70 _refine_ls_shell.R_factor_R_free 0.4 _refine_ls_shell.R_factor_R_free_error 0.069 _refine_ls_shell.percent_reflns_R_free 10.60 _refine_ls_shell.number_reflns_R_free 34 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 1S1K _struct.title 'INFLUENCE OF GROOVE INTERACTIONS ON DNA HOLLIDAY JUNCTION FORMATION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1S1K _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, 2, 6-Diaminopurine, Minor groove interactions, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 2 "O3'" ? ? ? 1_555 A 1AP 3 P ? ? A DC 2 A 1AP 3 1_555 ? ? ? ? ? ? ? 1.626 ? ? covale2 covale one ? A 1AP 3 "O3'" ? ? ? 1_555 A DG 4 P ? ? A 1AP 3 A DG 4 1_555 ? ? ? ? ? ? ? 1.634 ? ? covale3 covale none ? A 1AP 3 "O3'" ? ? ? 1_555 A DG 4 OP1 ? ? A 1AP 3 A DG 4 1_555 ? ? ? ? ? ? ? 1.935 ? ? metalc1 metalc ? ? A DT 5 OP1 ? ? ? 1_555 D NA . NA ? ? A DT 5 A NA 15 1_555 ? ? ? ? ? ? ? 2.502 ? ? metalc2 metalc ? ? A DC 7 OP2 ? ? ? 1_555 C CA . CA ? ? A DC 7 A CA 14 1_555 ? ? ? ? ? ? ? 2.539 ? ? metalc3 metalc ? ? A DC 7 OP2 ? ? ? 8_555 C CA . CA ? ? A DC 7 A CA 14 1_555 ? ? ? ? ? ? ? 2.448 ? ? metalc4 metalc ? ? B CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 11 A HOH 20 1_555 ? ? ? ? ? ? ? 3.150 ? ? metalc5 metalc ? ? B CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 11 A HOH 20 8_555 ? ? ? ? ? ? ? 3.173 ? ? metalc6 metalc ? ? B CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 11 A HOH 45 1_555 ? ? ? ? ? ? ? 2.830 ? ? metalc7 metalc ? ? B CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 11 A HOH 45 8_555 ? ? ? ? ? ? ? 2.840 ? ? metalc8 metalc ? ? C CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 14 A HOH 23 8_555 ? ? ? ? ? ? ? 3.355 ? ? metalc9 metalc ? ? C CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 14 A HOH 28 1_555 ? ? ? ? ? ? ? 2.375 ? ? metalc10 metalc ? ? C CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 14 A HOH 28 8_555 ? ? ? ? ? ? ? 2.342 ? ? metalc11 metalc ? ? D NA . NA ? ? ? 1_555 E HOH . O ? ? A NA 15 A HOH 31 1_555 ? ? ? ? ? ? ? 1.795 ? ? metalc12 metalc ? ? D NA . NA ? ? ? 1_555 E HOH . O ? ? A NA 15 A HOH 36 1_555 ? ? ? ? ? ? ? 2.731 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 10 N1 ? ? A DC 1 A DG 10 12_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 10 O6 ? ? A DC 1 A DG 10 12_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 10 N2 ? ? A DC 1 A DG 10 12_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 9 N1 ? ? A DC 2 A DG 9 12_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 9 O6 ? ? A DC 2 A DG 9 12_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 9 N2 ? ? A DC 2 A DG 9 12_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A 1AP 3 N2 ? ? ? 1_555 A DT 8 O2 ? ? A 1AP 3 A DT 8 12_545 ? ? ? ? ? ? '1AP-DT MISPAIR' ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 7 N3 ? ? A DG 4 A DC 7 12_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 7 O2 ? ? A DG 4 A DC 7 12_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 7 N4 ? ? A DG 4 A DC 7 12_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 N3 ? ? ? 1_555 A DA 6 N1 ? ? A DT 5 A DA 6 12_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 O4 ? ? ? 1_555 A DA 6 N6 ? ? A DT 5 A DA 6 12_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 A DT 5 N3 ? ? A DA 6 A DT 5 12_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DT 5 O4 ? ? A DA 6 A DT 5 12_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 7 A DG 4 12_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 7 A DG 4 12_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 7 A DG 4 12_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 8 O2 ? ? ? 1_555 A 1AP 3 N2 ? ? A DT 8 A 1AP 3 12_545 ? ? ? ? ? ? 'DT-1AP MISPAIR' ? ? ? hydrog19 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 9 A DC 2 12_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 9 A DC 2 12_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 9 A DC 2 12_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 10 A DC 1 12_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 10 A DC 1 12_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 10 A DC 1 12_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 11 ? 2 'BINDING SITE FOR RESIDUE CA A 11' AC2 Software A CA 14 ? 4 'BINDING SITE FOR RESIDUE CA A 14' AC3 Software A NA 15 ? 3 'BINDING SITE FOR RESIDUE NA A 15' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 HOH E . ? HOH A 45 . ? 1_555 ? 2 AC1 2 HOH E . ? HOH A 45 . ? 8_555 ? 3 AC2 4 DC A 7 ? DC A 7 . ? 1_555 ? 4 AC2 4 DC A 7 ? DC A 7 . ? 8_555 ? 5 AC2 4 HOH E . ? HOH A 28 . ? 1_555 ? 6 AC2 4 HOH E . ? HOH A 28 . ? 8_555 ? 7 AC3 3 DT A 5 ? DT A 5 . ? 1_555 ? 8 AC3 3 HOH E . ? HOH A 31 . ? 1_555 ? 9 AC3 3 HOH E . ? HOH A 36 . ? 1_555 ? # _database_PDB_matrix.entry_id 1S1K _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1S1K _atom_sites.fract_transf_matrix[1][1] 0.030343 _atom_sites.fract_transf_matrix[1][2] 0.017518 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035037 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011292 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N NA O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? 38.025 -13.246 14.559 1.00 16.83 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? 39.465 -13.354 14.416 1.00 15.99 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? 40.164 -13.198 13.073 1.00 16.06 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? 39.669 -14.121 12.032 1.00 15.10 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? 39.956 -11.747 12.600 1.00 16.57 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? 41.078 -11.063 11.978 1.00 19.07 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? 38.751 -11.822 11.774 1.00 15.21 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? 38.871 -13.283 11.117 1.00 14.84 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? 37.520 -13.943 10.749 1.00 13.64 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? 37.302 -14.347 9.461 1.00 13.57 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? 38.160 -14.010 8.691 1.00 14.79 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? 36.170 -15.042 9.024 1.00 12.77 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? 35.184 -15.309 9.872 1.00 12.82 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? 34.026 -15.809 9.431 1.00 10.67 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? 35.352 -14.943 11.294 1.00 13.91 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? 36.547 -14.183 11.665 1.00 14.09 ? 1 DC A C6 1 ATOM 17 P P . DC A 1 2 ? 41.213 -9.445 12.110 1.00 20.16 ? 2 DC A P 1 ATOM 18 O OP1 . DC A 1 2 ? 42.543 -9.006 12.200 1.00 21.61 ? 2 DC A OP1 1 ATOM 19 O OP2 . DC A 1 2 ? 40.109 -8.457 12.715 1.00 22.26 ? 2 DC A OP2 1 ATOM 20 O "O5'" . DC A 1 2 ? 40.863 -9.211 10.529 1.00 21.74 ? 2 DC A "O5'" 1 ATOM 21 C "C5'" . DC A 1 2 ? 41.919 -9.212 9.607 1.00 19.60 ? 2 DC A "C5'" 1 ATOM 22 C "C4'" . DC A 1 2 ? 41.278 -9.154 8.279 1.00 20.08 ? 2 DC A "C4'" 1 ATOM 23 O "O4'" . DC A 1 2 ? 40.298 -10.229 8.140 1.00 19.34 ? 2 DC A "O4'" 1 ATOM 24 C "C3'" . DC A 1 2 ? 40.509 -7.814 8.344 1.00 20.56 ? 2 DC A "C3'" 1 ATOM 25 O "O3'" . DC A 1 2 ? 40.181 -7.232 7.111 1.00 20.00 ? 2 DC A "O3'" 1 ATOM 26 C "C2'" . DC A 1 2 ? 39.160 -8.282 8.683 1.00 20.99 ? 2 DC A "C2'" 1 ATOM 27 C "C1'" . DC A 1 2 ? 39.110 -9.508 7.764 1.00 19.77 ? 2 DC A "C1'" 1 ATOM 28 N N1 . DC A 1 2 ? 37.844 -10.162 8.086 1.00 18.61 ? 2 DC A N1 1 ATOM 29 C C2 . DC A 1 2 ? 37.007 -10.812 7.053 1.00 18.54 ? 2 DC A C2 1 ATOM 30 O O2 . DC A 1 2 ? 37.330 -10.787 5.849 1.00 19.89 ? 2 DC A O2 1 ATOM 31 N N3 . DC A 1 2 ? 35.870 -11.397 7.437 1.00 17.84 ? 2 DC A N3 1 ATOM 32 C C4 . DC A 1 2 ? 35.512 -11.364 8.741 1.00 17.92 ? 2 DC A C4 1 ATOM 33 N N4 . DC A 1 2 ? 34.324 -12.064 9.161 1.00 17.74 ? 2 DC A N4 1 ATOM 34 C C5 . DC A 1 2 ? 36.293 -10.650 9.715 1.00 16.89 ? 2 DC A C5 1 ATOM 35 C C6 . DC A 1 2 ? 37.403 -10.107 9.350 1.00 17.87 ? 2 DC A C6 1 HETATM 36 N N1 . 1AP A 1 3 ? 33.295 -9.235 5.742 1.00 7.08 ? 3 1AP A N1 1 HETATM 37 C C2 . 1AP A 1 3 ? 33.684 -9.149 4.591 1.00 7.34 ? 3 1AP A C2 1 HETATM 38 C C4 . 1AP A 1 3 ? 35.431 -7.854 4.951 1.00 8.88 ? 3 1AP A C4 1 HETATM 39 C C5 . 1AP A 1 3 ? 35.198 -7.962 6.281 1.00 8.32 ? 3 1AP A C5 1 HETATM 40 C C6 . 1AP A 1 3 ? 33.986 -8.647 6.635 1.00 7.90 ? 3 1AP A C6 1 HETATM 41 C C8 . 1AP A 1 3 ? 36.734 -6.355 6.155 1.00 10.28 ? 3 1AP A C8 1 HETATM 42 N N2 . 1AP A 1 3 ? 33.206 -10.029 3.989 1.00 10.99 ? 3 1AP A N2 1 HETATM 43 N N3 . 1AP A 1 3 ? 34.616 -8.510 4.042 1.00 7.54 ? 3 1AP A N3 1 HETATM 44 N N9 . 1AP A 1 3 ? 36.509 -6.850 4.791 1.00 10.34 ? 3 1AP A N9 1 HETATM 45 N N7 . 1AP A 1 3 ? 36.100 -7.173 7.056 1.00 9.27 ? 3 1AP A N7 1 HETATM 46 N N6 . 1AP A 1 3 ? 33.527 -8.738 7.662 1.00 8.32 ? 3 1AP A N6 1 HETATM 47 P P . 1AP A 1 3 ? 40.587 -5.684 6.826 1.00 22.89 ? 3 1AP A P 1 HETATM 48 O OP1 . 1AP A 1 3 ? 42.011 -5.701 7.030 1.00 23.07 ? 3 1AP A OP1 1 HETATM 49 O OP2 . 1AP A 1 3 ? 39.782 -4.717 7.670 1.00 24.05 ? 3 1AP A OP2 1 HETATM 50 O "O5'" . 1AP A 1 3 ? 40.166 -5.600 5.216 1.00 20.15 ? 3 1AP A "O5'" 1 HETATM 51 C "C5'" . 1AP A 1 3 ? 40.525 -6.756 4.167 1.00 18.39 ? 3 1AP A "C5'" 1 HETATM 52 C "C4'" . 1AP A 1 3 ? 39.555 -6.872 2.965 1.00 16.47 ? 3 1AP A "C4'" 1 HETATM 53 O "O4'" . 1AP A 1 3 ? 38.247 -7.344 3.441 1.00 15.23 ? 3 1AP A "O4'" 1 HETATM 54 C "C1'" . 1AP A 1 3 ? 37.357 -6.469 3.648 1.00 11.82 ? 3 1AP A "C1'" 1 HETATM 55 C "C2'" . 1AP A 1 3 ? 38.012 -5.176 3.387 1.00 13.81 ? 3 1AP A "C2'" 1 HETATM 56 C "C3'" . 1AP A 1 3 ? 39.176 -5.503 2.456 1.00 16.25 ? 3 1AP A "C3'" 1 HETATM 57 O "O3'" . 1AP A 1 3 ? 38.828 -5.389 1.068 1.00 17.15 ? 3 1AP A "O3'" 1 ATOM 58 P P . DG A 1 4 ? 38.073 -4.020 0.592 1.00 17.61 ? 4 DG A P 1 ATOM 59 O OP1 . DG A 1 4 ? 38.853 -4.420 -0.607 1.00 17.00 ? 4 DG A OP1 1 ATOM 60 O OP2 . DG A 1 4 ? 38.014 -2.657 1.021 1.00 16.42 ? 4 DG A OP2 1 ATOM 61 O "O5'" . DG A 1 4 ? 36.506 -4.573 0.536 1.00 16.61 ? 4 DG A "O5'" 1 ATOM 62 C "C5'" . DG A 1 4 ? 36.158 -5.610 -0.281 1.00 11.55 ? 4 DG A "C5'" 1 ATOM 63 C "C4'" . DG A 1 4 ? 34.708 -5.888 -0.145 1.00 8.22 ? 4 DG A "C4'" 1 ATOM 64 O "O4'" . DG A 1 4 ? 34.556 -6.186 1.297 1.00 7.91 ? 4 DG A "O4'" 1 ATOM 65 C "C3'" . DG A 1 4 ? 33.742 -4.740 -0.547 1.00 8.96 ? 4 DG A "C3'" 1 ATOM 66 O "O3'" . DG A 1 4 ? 32.797 -5.140 -1.342 1.00 7.74 ? 4 DG A "O3'" 1 ATOM 67 C "C2'" . DG A 1 4 ? 33.063 -4.322 0.821 1.00 8.81 ? 4 DG A "C2'" 1 ATOM 68 C "C1'" . DG A 1 4 ? 33.290 -5.605 1.692 1.00 7.04 ? 4 DG A "C1'" 1 ATOM 69 N N9 . DG A 1 4 ? 33.291 -5.299 3.153 1.00 6.36 ? 4 DG A N9 1 ATOM 70 C C8 . DG A 1 4 ? 34.096 -4.625 3.883 1.00 5.03 ? 4 DG A C8 1 ATOM 71 N N7 . DG A 1 4 ? 33.758 -4.693 5.112 1.00 7.86 ? 4 DG A N7 1 ATOM 72 C C5 . DG A 1 4 ? 32.665 -5.555 5.199 1.00 6.44 ? 4 DG A C5 1 ATOM 73 C C6 . DG A 1 4 ? 31.871 -6.043 6.338 1.00 6.48 ? 4 DG A C6 1 ATOM 74 O O6 . DG A 1 4 ? 32.031 -5.805 7.541 1.00 5.95 ? 4 DG A O6 1 ATOM 75 N N1 . DG A 1 4 ? 30.840 -6.897 5.937 1.00 6.92 ? 4 DG A N1 1 ATOM 76 C C2 . DG A 1 4 ? 30.620 -7.270 4.591 1.00 7.08 ? 4 DG A C2 1 ATOM 77 N N2 . DG A 1 4 ? 29.717 -8.255 4.274 1.00 8.02 ? 4 DG A N2 1 ATOM 78 N N3 . DG A 1 4 ? 31.384 -6.709 3.585 1.00 6.87 ? 4 DG A N3 1 ATOM 79 C C4 . DG A 1 4 ? 32.335 -5.894 3.992 1.00 6.10 ? 4 DG A C4 1 ATOM 80 P P . DT A 1 5 ? 31.890 -4.094 -1.983 1.00 9.49 ? 5 DT A P 1 ATOM 81 O OP1 . DT A 1 5 ? 31.477 -4.589 -3.285 1.00 9.85 ? 5 DT A OP1 1 ATOM 82 O OP2 . DT A 1 5 ? 32.326 -2.700 -1.971 1.00 12.25 ? 5 DT A OP2 1 ATOM 83 O "O5'" . DT A 1 5 ? 30.532 -4.121 -1.217 1.00 9.22 ? 5 DT A "O5'" 1 ATOM 84 C "C5'" . DT A 1 5 ? 29.754 -5.262 -1.332 1.00 6.06 ? 5 DT A "C5'" 1 ATOM 85 C "C4'" . DT A 1 5 ? 28.565 -5.127 -0.474 1.00 6.21 ? 5 DT A "C4'" 1 ATOM 86 O "O4'" . DT A 1 5 ? 29.192 -5.194 0.843 1.00 4.61 ? 5 DT A "O4'" 1 ATOM 87 C "C3'" . DT A 1 5 ? 27.730 -3.865 -0.612 1.00 6.34 ? 5 DT A "C3'" 1 ATOM 88 O "O3'" . DT A 1 5 ? 26.538 -4.057 -0.271 1.00 8.53 ? 5 DT A "O3'" 1 ATOM 89 C "C2'" . DT A 1 5 ? 27.820 -3.272 0.740 1.00 5.72 ? 5 DT A "C2'" 1 ATOM 90 C "C1'" . DT A 1 5 ? 28.345 -4.516 1.660 1.00 5.04 ? 5 DT A "C1'" 1 ATOM 91 N N1 . DT A 1 5 ? 29.091 -4.067 2.995 1.00 6.39 ? 5 DT A N1 1 ATOM 92 C C2 . DT A 1 5 ? 28.525 -4.479 4.180 1.00 5.55 ? 5 DT A C2 1 ATOM 93 O O2 . DT A 1 5 ? 27.548 -5.347 4.273 1.00 5.71 ? 5 DT A O2 1 ATOM 94 N N3 . DT A 1 5 ? 29.102 -3.919 5.196 1.00 6.27 ? 5 DT A N3 1 ATOM 95 C C4 . DT A 1 5 ? 30.256 -3.112 5.301 1.00 6.92 ? 5 DT A C4 1 ATOM 96 O O4 . DT A 1 5 ? 30.698 -2.871 6.339 1.00 7.03 ? 5 DT A O4 1 ATOM 97 C C5 . DT A 1 5 ? 30.822 -2.770 4.132 1.00 5.91 ? 5 DT A C5 1 ATOM 98 C C7 . DT A 1 5 ? 32.027 -1.959 4.157 1.00 9.36 ? 5 DT A C7 1 ATOM 99 C C6 . DT A 1 5 ? 30.250 -3.232 3.043 1.00 6.55 ? 5 DT A C6 1 ATOM 100 P P . DA A 1 6 ? 25.366 -3.274 -0.931 1.00 10.00 ? 6 DA A P 1 ATOM 101 O OP1 . DA A 1 6 ? 25.452 -4.015 -1.978 1.00 11.86 ? 6 DA A OP1 1 ATOM 102 O OP2 . DA A 1 6 ? 25.748 -1.700 -0.936 1.00 14.00 ? 6 DA A OP2 1 ATOM 103 O "O5'" . DA A 1 6 ? 24.020 -3.786 -0.409 1.00 9.96 ? 6 DA A "O5'" 1 ATOM 104 C "C5'" . DA A 1 6 ? 23.752 -5.077 0.134 1.00 8.57 ? 6 DA A "C5'" 1 ATOM 105 C "C4'" . DA A 1 6 ? 22.821 -4.922 1.301 1.00 8.71 ? 6 DA A "C4'" 1 ATOM 106 O "O4'" . DA A 1 6 ? 23.617 -4.520 2.392 1.00 8.40 ? 6 DA A "O4'" 1 ATOM 107 C "C3'" . DA A 1 6 ? 21.726 -3.931 1.309 1.00 11.15 ? 6 DA A "C3'" 1 ATOM 108 O "O3'" . DA A 1 6 ? 20.617 -4.376 2.063 1.00 13.86 ? 6 DA A "O3'" 1 ATOM 109 C "C2'" . DA A 1 6 ? 22.257 -2.784 2.194 1.00 10.24 ? 6 DA A "C2'" 1 ATOM 110 C "C1'" . DA A 1 6 ? 23.234 -3.419 3.077 1.00 8.75 ? 6 DA A "C1'" 1 ATOM 111 N N9 . DA A 1 6 ? 24.517 -2.663 3.519 1.00 6.02 ? 6 DA A N9 1 ATOM 112 C C8 . DA A 1 6 ? 25.448 -2.146 2.714 1.00 6.64 ? 6 DA A C8 1 ATOM 113 N N7 . DA A 1 6 ? 26.467 -1.629 3.271 1.00 4.57 ? 6 DA A N7 1 ATOM 114 C C5 . DA A 1 6 ? 26.141 -1.756 4.638 1.00 5.13 ? 6 DA A C5 1 ATOM 115 C C6 . DA A 1 6 ? 26.841 -1.305 5.922 1.00 3.26 ? 6 DA A C6 1 ATOM 116 N N6 . DA A 1 6 ? 27.789 -0.614 5.903 1.00 2.47 ? 6 DA A N6 1 ATOM 117 N N1 . DA A 1 6 ? 26.365 -1.749 7.067 1.00 3.69 ? 6 DA A N1 1 ATOM 118 C C2 . DA A 1 6 ? 25.328 -2.576 6.930 1.00 2.47 ? 6 DA A C2 1 ATOM 119 N N3 . DA A 1 6 ? 24.624 -2.925 5.956 1.00 3.33 ? 6 DA A N3 1 ATOM 120 C C4 . DA A 1 6 ? 25.013 -2.477 4.792 1.00 5.01 ? 6 DA A C4 1 ATOM 121 P P . DC A 1 7 ? 19.255 -3.418 2.094 1.00 15.39 ? 7 DC A P 1 ATOM 122 O OP1 . DC A 1 7 ? 18.704 -4.729 1.470 1.00 15.50 ? 7 DC A OP1 1 ATOM 123 O OP2 . DC A 1 7 ? 19.119 -2.094 1.335 1.00 15.81 ? 7 DC A OP2 1 ATOM 124 O "O5'" . DC A 1 7 ? 19.093 -2.893 3.473 1.00 13.91 ? 7 DC A "O5'" 1 ATOM 125 C "C5'" . DC A 1 7 ? 20.181 -2.994 4.328 1.00 15.53 ? 7 DC A "C5'" 1 ATOM 126 C "C4'" . DC A 1 7 ? 19.763 -2.534 5.701 1.00 14.47 ? 7 DC A "C4'" 1 ATOM 127 O "O4'" . DC A 1 7 ? 21.039 -1.976 5.815 1.00 12.70 ? 7 DC A "O4'" 1 ATOM 128 C "C3'" . DC A 1 7 ? 18.748 -1.398 5.722 1.00 15.61 ? 7 DC A "C3'" 1 ATOM 129 O "O3'" . DC A 1 7 ? 17.855 -1.301 6.850 1.00 19.64 ? 7 DC A "O3'" 1 ATOM 130 C "C2'" . DC A 1 7 ? 19.558 -0.198 5.431 1.00 12.66 ? 7 DC A "C2'" 1 ATOM 131 C "C1'" . DC A 1 7 ? 20.862 -0.636 6.030 1.00 11.52 ? 7 DC A "C1'" 1 ATOM 132 N N1 . DC A 1 7 ? 22.103 -0.003 5.674 1.00 8.30 ? 7 DC A N1 1 ATOM 133 C C2 . DC A 1 7 ? 23.065 0.242 6.709 1.00 8.33 ? 7 DC A C2 1 ATOM 134 O O2 . DC A 1 7 ? 22.910 -0.336 7.726 1.00 7.47 ? 7 DC A O2 1 ATOM 135 N N3 . DC A 1 7 ? 24.175 1.056 6.489 1.00 5.73 ? 7 DC A N3 1 ATOM 136 C C4 . DC A 1 7 ? 24.452 1.256 5.230 1.00 6.86 ? 7 DC A C4 1 ATOM 137 N N4 . DC A 1 7 ? 25.502 1.848 4.911 1.00 4.77 ? 7 DC A N4 1 ATOM 138 C C5 . DC A 1 7 ? 23.593 0.794 4.156 1.00 7.57 ? 7 DC A C5 1 ATOM 139 C C6 . DC A 1 7 ? 22.368 0.304 4.445 1.00 7.15 ? 7 DC A C6 1 ATOM 140 P P . DT A 1 8 ? 16.695 -0.014 7.004 1.00 22.98 ? 8 DT A P 1 ATOM 141 O OP1 . DT A 1 8 ? 15.323 -0.583 6.849 1.00 22.38 ? 8 DT A OP1 1 ATOM 142 O OP2 . DT A 1 8 ? 16.937 1.290 6.004 1.00 22.69 ? 8 DT A OP2 1 ATOM 143 O "O5'" . DT A 1 8 ? 16.998 0.508 8.475 1.00 19.51 ? 8 DT A "O5'" 1 ATOM 144 C "C5'" . DT A 1 8 ? 17.957 -0.195 9.316 1.00 16.17 ? 8 DT A "C5'" 1 ATOM 145 C "C4'" . DT A 1 8 ? 18.216 0.665 10.515 1.00 13.80 ? 8 DT A "C4'" 1 ATOM 146 O "O4'" . DT A 1 8 ? 19.385 1.271 10.322 1.00 11.88 ? 8 DT A "O4'" 1 ATOM 147 C "C3'" . DT A 1 8 ? 17.281 1.764 10.804 1.00 13.11 ? 8 DT A "C3'" 1 ATOM 148 O "O3'" . DT A 1 8 ? 16.979 1.722 12.149 1.00 12.28 ? 8 DT A "O3'" 1 ATOM 149 C "C2'" . DT A 1 8 ? 17.961 2.987 10.144 1.00 12.37 ? 8 DT A "C2'" 1 ATOM 150 C "C1'" . DT A 1 8 ? 19.327 2.646 10.179 1.00 10.81 ? 8 DT A "C1'" 1 ATOM 151 N N1 . DT A 1 8 ? 20.265 3.043 9.027 1.00 9.66 ? 8 DT A N1 1 ATOM 152 C C2 . DT A 1 8 ? 21.551 3.468 9.372 1.00 8.92 ? 8 DT A C2 1 ATOM 153 O O2 . DT A 1 8 ? 21.913 3.566 10.407 1.00 9.59 ? 8 DT A O2 1 ATOM 154 N N3 . DT A 1 8 ? 22.371 3.772 8.340 1.00 8.48 ? 8 DT A N3 1 ATOM 155 C C4 . DT A 1 8 ? 22.048 3.701 7.011 1.00 8.28 ? 8 DT A C4 1 ATOM 156 O O4 . DT A 1 8 ? 22.879 4.040 6.235 1.00 8.19 ? 8 DT A O4 1 ATOM 157 C C5 . DT A 1 8 ? 20.701 3.292 6.748 1.00 7.17 ? 8 DT A C5 1 ATOM 158 C C7 . DT A 1 8 ? 20.262 3.265 5.415 1.00 8.53 ? 8 DT A C7 1 ATOM 159 C C6 . DT A 1 8 ? 19.918 2.992 7.689 1.00 7.97 ? 8 DT A C6 1 ATOM 160 P P . DG A 1 9 ? 16.471 3.057 13.016 1.00 13.37 ? 9 DG A P 1 ATOM 161 O OP1 . DG A 1 9 ? 15.816 2.124 13.753 1.00 13.24 ? 9 DG A OP1 1 ATOM 162 O OP2 . DG A 1 9 ? 15.860 4.114 12.458 1.00 14.04 ? 9 DG A OP2 1 ATOM 163 O "O5'" . DG A 1 9 ? 17.400 3.854 13.971 1.00 11.45 ? 9 DG A "O5'" 1 ATOM 164 C "C5'" . DG A 1 9 ? 18.660 3.972 13.792 1.00 12.89 ? 9 DG A "C5'" 1 ATOM 165 C "C4'" . DG A 1 9 ? 19.221 5.056 14.700 1.00 12.33 ? 9 DG A "C4'" 1 ATOM 166 O "O4'" . DG A 1 9 ? 20.034 5.670 13.746 1.00 13.65 ? 9 DG A "O4'" 1 ATOM 167 C "C3'" . DG A 1 9 ? 18.390 6.257 15.160 1.00 13.38 ? 9 DG A "C3'" 1 ATOM 168 O "O3'" . DG A 1 9 ? 19.048 6.955 16.177 1.00 16.23 ? 9 DG A "O3'" 1 ATOM 169 C "C2'" . DG A 1 9 ? 18.013 6.952 13.899 1.00 12.03 ? 9 DG A "C2'" 1 ATOM 170 C "C1'" . DG A 1 9 ? 19.374 6.767 13.258 1.00 12.26 ? 9 DG A "C1'" 1 ATOM 171 N N9 . DG A 1 9 ? 19.530 6.753 11.845 1.00 10.47 ? 9 DG A N9 1 ATOM 172 C C8 . DG A 1 9 ? 18.637 6.255 10.928 1.00 11.17 ? 9 DG A C8 1 ATOM 173 N N7 . DG A 1 9 ? 19.118 6.307 9.732 1.00 10.95 ? 9 DG A N7 1 ATOM 174 C C5 . DG A 1 9 ? 20.353 6.955 9.896 1.00 9.78 ? 9 DG A C5 1 ATOM 175 C C6 . DG A 1 9 ? 21.298 7.143 8.928 1.00 8.26 ? 9 DG A C6 1 ATOM 176 O O6 . DG A 1 9 ? 21.236 6.740 7.857 1.00 6.86 ? 9 DG A O6 1 ATOM 177 N N1 . DG A 1 9 ? 22.413 7.671 9.437 1.00 8.38 ? 9 DG A N1 1 ATOM 178 C C2 . DG A 1 9 ? 22.674 7.841 10.740 1.00 8.18 ? 9 DG A C2 1 ATOM 179 N N2 . DG A 1 9 ? 24.055 8.295 11.068 1.00 7.10 ? 9 DG A N2 1 ATOM 180 N N3 . DG A 1 9 ? 21.709 7.575 11.738 1.00 9.17 ? 9 DG A N3 1 ATOM 181 C C4 . DG A 1 9 ? 20.616 7.185 11.193 1.00 9.33 ? 9 DG A C4 1 ATOM 182 P P . DG A 1 10 ? 18.468 8.406 16.711 1.00 19.70 ? 10 DG A P 1 ATOM 183 O OP1 . DG A 1 10 ? 18.467 8.413 18.141 1.00 18.26 ? 10 DG A OP1 1 ATOM 184 O OP2 . DG A 1 10 ? 17.213 8.600 15.813 1.00 19.63 ? 10 DG A OP2 1 ATOM 185 O "O5'" . DG A 1 10 ? 19.386 9.590 16.665 1.00 18.09 ? 10 DG A "O5'" 1 ATOM 186 C "C5'" . DG A 1 10 ? 20.611 9.375 16.288 1.00 19.76 ? 10 DG A "C5'" 1 ATOM 187 C "C4'" . DG A 1 10 ? 21.070 10.601 15.536 1.00 19.86 ? 10 DG A "C4'" 1 ATOM 188 O "O4'" . DG A 1 10 ? 21.424 10.548 14.099 1.00 18.34 ? 10 DG A "O4'" 1 ATOM 189 C "C3'" . DG A 1 10 ? 20.120 11.790 15.724 1.00 19.24 ? 10 DG A "C3'" 1 ATOM 190 O "O3'" . DG A 1 10 ? 21.142 12.526 15.374 1.00 19.28 ? 10 DG A "O3'" 1 ATOM 191 C "C2'" . DG A 1 10 ? 19.316 11.727 14.465 1.00 18.92 ? 10 DG A "C2'" 1 ATOM 192 C "C1'" . DG A 1 10 ? 20.425 11.450 13.446 1.00 17.45 ? 10 DG A "C1'" 1 ATOM 193 N N9 . DG A 1 10 ? 19.941 10.852 12.185 1.00 16.35 ? 10 DG A N9 1 ATOM 194 C C8 . DG A 1 10 ? 18.912 10.010 11.968 1.00 15.57 ? 10 DG A C8 1 ATOM 195 N N7 . DG A 1 10 ? 18.818 9.587 10.725 1.00 14.02 ? 10 DG A N7 1 ATOM 196 C C5 . DG A 1 10 ? 19.776 10.252 10.059 1.00 15.23 ? 10 DG A C5 1 ATOM 197 C C6 . DG A 1 10 ? 20.108 10.198 8.755 1.00 14.30 ? 10 DG A C6 1 ATOM 198 O O6 . DG A 1 10 ? 19.411 9.759 7.826 1.00 15.49 ? 10 DG A O6 1 ATOM 199 N N1 . DG A 1 10 ? 21.306 10.727 8.518 1.00 14.71 ? 10 DG A N1 1 ATOM 200 C C2 . DG A 1 10 ? 22.189 11.409 9.323 1.00 15.58 ? 10 DG A C2 1 ATOM 201 N N2 . DG A 1 10 ? 23.438 11.792 8.753 1.00 15.40 ? 10 DG A N2 1 ATOM 202 N N3 . DG A 1 10 ? 21.884 11.663 10.603 1.00 16.36 ? 10 DG A N3 1 ATOM 203 C C4 . DG A 1 10 ? 20.582 11.004 10.923 1.00 16.49 ? 10 DG A C4 1 HETATM 204 CA CA . CA B 2 . ? 29.496 -0.007 0.017 0.50 20.92 ? 11 CA A CA 1 HETATM 205 CA CA . CA C 2 . ? 19.344 0.033 -0.034 0.50 8.99 ? 14 CA A CA 1 HETATM 206 NA NA . NA D 3 . ? 31.335 -4.168 -5.747 1.00 7.49 ? 15 NA A NA 1 HETATM 207 O O . HOH E 4 . ? 40.749 -11.899 4.100 1.00 4.39 ? 12 HOH A O 1 HETATM 208 O O . HOH E 4 . ? 35.246 -10.662 -0.225 1.00 6.63 ? 13 HOH A O 1 HETATM 209 O O . HOH E 4 . ? 14.974 0.198 13.640 1.00 21.84 ? 16 HOH A O 1 HETATM 210 O O . HOH E 4 . ? 35.661 -12.708 14.227 1.00 9.94 ? 17 HOH A O 1 HETATM 211 O O . HOH E 4 . ? 20.548 3.060 2.259 1.00 12.63 ? 18 HOH A O 1 HETATM 212 O O . HOH E 4 . ? 28.218 -7.915 1.868 1.00 13.89 ? 19 HOH A O 1 HETATM 213 O O . HOH E 4 . ? 27.634 0.733 2.447 1.00 10.48 ? 20 HOH A O 1 HETATM 214 O O . HOH E 4 . ? 38.707 -9.843 4.179 1.00 23.35 ? 21 HOH A O 1 HETATM 215 O O . HOH E 4 . ? 22.616 -4.579 -3.448 1.00 12.41 ? 22 HOH A O 1 HETATM 216 O O . HOH E 4 . ? 18.461 0.806 3.160 1.00 21.89 ? 23 HOH A O 1 HETATM 217 O O . HOH E 4 . ? 42.432 -4.953 -8.496 1.00 25.84 ? 24 HOH A O 1 HETATM 218 O O . HOH E 4 . ? 36.176 -9.464 12.929 1.00 18.01 ? 25 HOH A O 1 HETATM 219 O O . HOH E 4 . ? 14.786 9.269 8.653 1.00 36.96 ? 26 HOH A O 1 HETATM 220 O O . HOH E 4 . ? 33.409 -11.686 0.543 1.00 8.85 ? 27 HOH A O 1 HETATM 221 O O . HOH E 4 . ? 20.743 0.640 1.787 1.00 18.31 ? 28 HOH A O 1 HETATM 222 O O . HOH E 4 . ? 39.350 -1.694 3.067 1.00 7.43 ? 29 HOH A O 1 HETATM 223 O O . HOH E 4 . ? 41.792 -13.299 8.477 1.00 13.54 ? 30 HOH A O 1 HETATM 224 O O . HOH E 4 . ? 30.378 -2.650 -5.780 1.00 20.32 ? 31 HOH A O 1 HETATM 225 O O . HOH E 4 . ? 13.213 7.636 7.381 0.50 18.98 ? 32 HOH A O 1 HETATM 226 O O . HOH E 4 . ? 41.510 -5.622 10.465 1.00 25.30 ? 33 HOH A O 1 HETATM 227 O O . HOH E 4 . ? 14.003 -1.229 3.377 1.00 22.98 ? 34 HOH A O 1 HETATM 228 O O . HOH E 4 . ? 33.678 -8.898 -0.096 1.00 23.78 ? 35 HOH A O 1 HETATM 229 O O . HOH E 4 . ? 31.510 -6.686 -4.704 1.00 22.58 ? 36 HOH A O 1 HETATM 230 O O . HOH E 4 . ? 24.191 -0.656 -0.134 1.00 37.03 ? 37 HOH A O 1 HETATM 231 O O . HOH E 4 . ? 34.683 -1.165 2.647 1.00 24.06 ? 38 HOH A O 1 HETATM 232 O O . HOH E 4 . ? 32.931 -8.376 -2.000 1.00 36.03 ? 41 HOH A O 1 HETATM 233 O O . HOH E 4 . ? 29.573 0.976 3.630 1.00 17.71 ? 42 HOH A O 1 HETATM 234 O O . HOH E 4 . ? 16.836 9.152 19.774 1.00 23.82 ? 43 HOH A O 1 HETATM 235 O O . HOH E 4 . ? 43.030 -7.799 2.365 1.00 27.29 ? 44 HOH A O 1 HETATM 236 O O . HOH E 4 . ? 31.606 -1.893 0.056 1.00 35.98 ? 45 HOH A O 1 HETATM 237 O O . HOH E 4 . ? 43.828 -2.826 -5.187 1.00 30.44 ? 46 HOH A O 1 HETATM 238 O O . HOH E 4 . ? 43.285 -7.288 5.941 1.00 26.21 ? 47 HOH A O 1 HETATM 239 O O . HOH E 4 . ? 40.565 -11.654 6.722 1.00 36.32 ? 48 HOH A O 1 HETATM 240 O O . HOH E 4 . ? 26.408 -5.732 2.547 1.00 23.34 ? 49 HOH A O 1 HETATM 241 O O . HOH E 4 . ? 35.838 -2.883 -3.092 1.00 21.87 ? 50 HOH A O 1 HETATM 242 O O . HOH E 4 . ? 39.373 -1.951 -5.555 1.00 26.86 ? 51 HOH A O 1 HETATM 243 O O . HOH E 4 . ? 36.769 -0.645 -7.025 1.00 25.74 ? 52 HOH A O 1 HETATM 244 O O . HOH E 4 . ? 15.109 6.478 12.863 1.00 49.09 ? 53 HOH A O 1 HETATM 245 O O . HOH E 4 . ? 14.190 7.554 19.893 1.00 34.14 ? 54 HOH A O 1 HETATM 246 O O . HOH E 4 . ? 41.192 -9.062 5.836 1.00 35.13 ? 55 HOH A O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 1AP 3 3 3 1AP DAP A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DG 10 10 10 DG G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 11 11 CA CA A . C 2 CA 1 14 14 CA CA A . D 3 NA 1 15 15 NA NA A . E 4 HOH 1 12 12 HOH WAT A . E 4 HOH 2 13 13 HOH WAT A . E 4 HOH 3 16 16 HOH WAT A . E 4 HOH 4 17 17 HOH WAT A . E 4 HOH 5 18 18 HOH WAT A . E 4 HOH 6 19 19 HOH WAT A . E 4 HOH 7 20 20 HOH WAT A . E 4 HOH 8 21 21 HOH WAT A . E 4 HOH 9 22 22 HOH WAT A . E 4 HOH 10 23 23 HOH WAT A . E 4 HOH 11 24 24 HOH WAT A . E 4 HOH 12 25 25 HOH WAT A . E 4 HOH 13 26 26 HOH WAT A . E 4 HOH 14 27 27 HOH WAT A . E 4 HOH 15 28 28 HOH WAT A . E 4 HOH 16 29 29 HOH WAT A . E 4 HOH 17 30 30 HOH WAT A . E 4 HOH 18 31 31 HOH WAT A . E 4 HOH 19 32 32 HOH WAT A . E 4 HOH 20 33 33 HOH WAT A . E 4 HOH 21 34 34 HOH WAT A . E 4 HOH 22 35 35 HOH WAT A . E 4 HOH 23 36 36 HOH WAT A . E 4 HOH 24 37 37 HOH WAT A . E 4 HOH 25 38 38 HOH WAT A . E 4 HOH 26 41 41 HOH WAT A . E 4 HOH 27 42 42 HOH WAT A . E 4 HOH 28 43 43 HOH WAT A . E 4 HOH 29 44 44 HOH WAT A . E 4 HOH 30 45 45 HOH WAT A . E 4 HOH 31 46 46 HOH WAT A . E 4 HOH 32 47 47 HOH WAT A . E 4 HOH 33 48 48 HOH WAT A . E 4 HOH 34 49 49 HOH WAT A . E 4 HOH 35 50 50 HOH WAT A . E 4 HOH 36 51 51 HOH WAT A . E 4 HOH 37 52 52 HOH WAT A . E 4 HOH 38 53 53 HOH WAT A . E 4 HOH 39 54 54 HOH WAT A . E 4 HOH 40 55 55 HOH WAT A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id 1AP _pdbx_struct_mod_residue.label_seq_id 3 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id 1AP _pdbx_struct_mod_residue.auth_seq_id 3 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DA _pdbx_struct_mod_residue.details '2,6-DIAMINOPURINE NUCLEOTIDE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5000000000 0.8660254038 0.0000000000 16.4785000000 0.8660254038 -0.5000000000 0.0000000000 -28.5415992325 0.0000000000 0.0000000000 -1.0000000000 14.7593333333 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A CA 11 ? B CA . 2 1 A CA 14 ? C CA . 3 1 A HOH 32 ? E HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DT 5 ? A DT 5 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? E HOH . ? A HOH 31 ? 1_555 101.0 ? 2 OP1 ? A DT 5 ? A DT 5 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? E HOH . ? A HOH 36 ? 1_555 57.7 ? 3 O ? E HOH . ? A HOH 31 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? E HOH . ? A HOH 36 ? 1_555 145.2 ? 4 OP2 ? A DC 7 ? A DC 7 ? 1_555 CA ? C CA . ? A CA 14 ? 1_555 OP2 ? A DC 7 ? A DC 7 ? 8_555 169.6 ? 5 OP2 ? A DC 7 ? A DC 7 ? 1_555 CA ? C CA . ? A CA 14 ? 1_555 O ? E HOH . ? A HOH 23 ? 8_555 105.6 ? 6 OP2 ? A DC 7 ? A DC 7 ? 8_555 CA ? C CA . ? A CA 14 ? 1_555 O ? E HOH . ? A HOH 23 ? 8_555 72.0 ? 7 OP2 ? A DC 7 ? A DC 7 ? 1_555 CA ? C CA . ? A CA 14 ? 1_555 O ? E HOH . ? A HOH 28 ? 1_555 81.5 ? 8 OP2 ? A DC 7 ? A DC 7 ? 8_555 CA ? C CA . ? A CA 14 ? 1_555 O ? E HOH . ? A HOH 28 ? 1_555 104.3 ? 9 O ? E HOH . ? A HOH 23 ? 8_555 CA ? C CA . ? A CA 14 ? 1_555 O ? E HOH . ? A HOH 28 ? 1_555 159.0 ? 10 OP2 ? A DC 7 ? A DC 7 ? 1_555 CA ? C CA . ? A CA 14 ? 1_555 O ? E HOH . ? A HOH 28 ? 8_555 102.5 ? 11 OP2 ? A DC 7 ? A DC 7 ? 8_555 CA ? C CA . ? A CA 14 ? 1_555 O ? E HOH . ? A HOH 28 ? 8_555 84.2 ? 12 O ? E HOH . ? A HOH 23 ? 8_555 CA ? C CA . ? A CA 14 ? 1_555 O ? E HOH . ? A HOH 28 ? 8_555 52.3 ? 13 O ? E HOH . ? A HOH 28 ? 1_555 CA ? C CA . ? A CA 14 ? 1_555 O ? E HOH . ? A HOH 28 ? 8_555 107.2 ? 14 O ? E HOH . ? A HOH 20 ? 1_555 CA ? B CA . ? A CA 11 ? 1_555 O ? E HOH . ? A HOH 20 ? 8_555 107.8 ? 15 O ? E HOH . ? A HOH 20 ? 1_555 CA ? B CA . ? A CA 11 ? 1_555 O ? E HOH . ? A HOH 45 ? 1_555 125.9 ? 16 O ? E HOH . ? A HOH 20 ? 8_555 CA ? B CA . ? A CA 11 ? 1_555 O ? E HOH . ? A HOH 45 ? 1_555 107.2 ? 17 O ? E HOH . ? A HOH 20 ? 1_555 CA ? B CA . ? A CA 11 ? 1_555 O ? E HOH . ? A HOH 45 ? 8_555 107.6 ? 18 O ? E HOH . ? A HOH 20 ? 8_555 CA ? B CA . ? A CA 11 ? 1_555 O ? E HOH . ? A HOH 45 ? 8_555 124.7 ? 19 O ? E HOH . ? A HOH 45 ? 1_555 CA ? B CA . ? A CA 11 ? 1_555 O ? E HOH . ? A HOH 45 ? 8_555 83.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-08-31 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.occupancy' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 23 4 'Structure model' '_pdbx_struct_conn_angle.value' 24 4 'Structure model' '_struct_conn.pdbx_dist_value' 25 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 26 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 27 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 32 4 'Structure model' '_struct_conn.ptnr1_symmetry' 33 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 34 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 39 4 'Structure model' '_struct_conn.ptnr2_symmetry' 40 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 41 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 42 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 EPMR phasing . ? 3 CNS refinement 1.0 ? 4 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ;BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN(S). THE FULL BIOLOGICAL UNIT CONSISTS OF TWO STRANDS FORMING A B-DNA DUPLEX STRUCTURE. SEE REMARK 350 FOR INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O4'" A DC 2 ? ? O A HOH 48 ? ? 2.03 2 1 OP2 A DA 6 ? ? O A HOH 37 ? ? 2.04 3 1 O2 A DT 5 ? ? O A HOH 49 ? ? 2.10 4 1 OP1 A DG 9 ? ? O A HOH 16 ? ? 2.11 5 1 O A HOH 35 ? ? O A HOH 41 ? ? 2.11 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 37 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 37 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 8_555 _pdbx_validate_symm_contact.dist 1.34 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 1.463 1.516 -0.053 0.008 N 2 1 "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 1.606 1.519 0.087 0.010 N 3 1 C4 A DC 1 ? ? C5 A DC 1 ? ? 1.478 1.425 0.053 0.008 N 4 1 C5 A DC 1 ? ? C6 A DC 1 ? ? 1.464 1.339 0.125 0.008 N 5 1 P A DC 2 ? ? OP2 A DC 2 ? ? 1.600 1.485 0.115 0.017 N 6 1 "C3'" A DC 2 ? ? "C2'" A DC 2 ? ? 1.468 1.516 -0.048 0.008 N 7 1 C4 A DC 2 ? ? N4 A DC 2 ? ? 1.441 1.335 0.106 0.009 N 8 1 N1 A DC 2 ? ? C2 A DC 2 ? ? 1.480 1.397 0.083 0.010 N 9 1 C5 A DC 2 ? ? C6 A DC 2 ? ? 1.288 1.339 -0.051 0.008 N 10 1 P A DG 4 ? ? "O5'" A DG 4 ? ? 1.663 1.593 0.070 0.010 N 11 1 "O3'" A DG 4 ? ? "C3'" A DG 4 ? ? 1.298 1.419 -0.121 0.006 N 12 1 C2 A DG 4 ? ? N3 A DG 4 ? ? 1.382 1.323 0.059 0.008 N 13 1 C4 A DG 4 ? ? C5 A DG 4 ? ? 1.296 1.379 -0.083 0.007 N 14 1 C8 A DG 4 ? ? N9 A DG 4 ? ? 1.279 1.374 -0.095 0.007 N 15 1 "O3'" A DG 4 ? ? P A DT 5 ? ? 1.526 1.607 -0.081 0.012 Y 16 1 "C2'" A DT 5 ? ? "C1'" A DT 5 ? ? 1.634 1.519 0.115 0.010 N 17 1 "O3'" A DT 5 ? ? "C3'" A DT 5 ? ? 1.255 1.419 -0.164 0.006 N 18 1 "C1'" A DT 5 ? ? N1 A DT 5 ? ? 1.594 1.488 0.106 0.013 N 19 1 C2 A DT 5 ? ? N3 A DT 5 ? ? 1.296 1.373 -0.077 0.008 N 20 1 C4 A DT 5 ? ? C5 A DT 5 ? ? 1.343 1.445 -0.102 0.009 N 21 1 C6 A DT 5 ? ? N1 A DT 5 ? ? 1.429 1.378 0.051 0.007 N 22 1 C2 A DT 5 ? ? O2 A DT 5 ? ? 1.310 1.220 0.090 0.008 N 23 1 C4 A DT 5 ? ? O4 A DT 5 ? ? 1.154 1.228 -0.074 0.009 N 24 1 C5 A DT 5 ? ? C7 A DT 5 ? ? 1.453 1.496 -0.043 0.006 N 25 1 P A DA 6 ? ? OP1 A DA 6 ? ? 1.286 1.485 -0.199 0.017 N 26 1 P A DA 6 ? ? OP2 A DA 6 ? ? 1.620 1.485 0.135 0.017 N 27 1 P A DA 6 ? ? "O5'" A DA 6 ? ? 1.532 1.593 -0.061 0.010 N 28 1 C2 A DA 6 ? ? N3 A DA 6 ? ? 1.251 1.331 -0.080 0.009 N 29 1 N3 A DA 6 ? ? C4 A DA 6 ? ? 1.306 1.344 -0.038 0.006 N 30 1 C5 A DA 6 ? ? C6 A DA 6 ? ? 1.530 1.406 0.124 0.009 N 31 1 C6 A DA 6 ? ? N6 A DA 6 ? ? 1.173 1.335 -0.162 0.008 N 32 1 P A DC 7 ? ? "O5'" A DC 7 ? ? 1.484 1.593 -0.109 0.010 N 33 1 C2 A DC 7 ? ? O2 A DC 7 ? ? 1.180 1.240 -0.060 0.009 N 34 1 C4 A DC 7 ? ? N4 A DC 7 ? ? 1.247 1.335 -0.088 0.009 N 35 1 N1 A DC 7 ? ? C6 A DC 7 ? ? 1.294 1.367 -0.073 0.006 N 36 1 "O3'" A DC 7 ? ? P A DT 8 ? ? 1.739 1.607 0.132 0.012 Y 37 1 P A DT 8 ? ? OP2 A DT 8 ? ? 1.661 1.485 0.176 0.017 N 38 1 "C2'" A DT 8 ? ? "C1'" A DT 8 ? ? 1.408 1.518 -0.110 0.010 N 39 1 "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? 1.331 1.446 -0.115 0.010 N 40 1 "O3'" A DT 8 ? ? "C3'" A DT 8 ? ? 1.379 1.419 -0.040 0.006 N 41 1 C5 A DT 8 ? ? C6 A DT 8 ? ? 1.260 1.339 -0.079 0.007 N 42 1 C2 A DT 8 ? ? O2 A DT 8 ? ? 1.101 1.220 -0.119 0.008 N 43 1 C5 A DT 8 ? ? C7 A DT 8 ? ? 1.404 1.496 -0.092 0.006 N 44 1 P A DG 9 ? ? OP1 A DG 9 ? ? 1.357 1.485 -0.128 0.017 N 45 1 P A DG 9 ? ? OP2 A DG 9 ? ? 1.342 1.485 -0.143 0.017 N 46 1 C2 A DG 9 ? ? N3 A DG 9 ? ? 1.414 1.323 0.091 0.008 N 47 1 N3 A DG 9 ? ? C4 A DG 9 ? ? 1.282 1.350 -0.068 0.007 N 48 1 C6 A DG 9 ? ? N1 A DG 9 ? ? 1.335 1.391 -0.056 0.007 N 49 1 C2 A DG 9 ? ? N2 A DG 9 ? ? 1.490 1.341 0.149 0.010 N 50 1 C6 A DG 9 ? ? O6 A DG 9 ? ? 1.146 1.237 -0.091 0.009 N 51 1 P A DG 10 ? ? "O5'" A DG 10 ? ? 1.499 1.593 -0.094 0.010 N 52 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? 1.496 1.420 0.076 0.011 N 53 1 "O3'" A DG 10 ? ? "C3'" A DG 10 ? ? 1.307 1.419 -0.112 0.006 N 54 1 N3 A DG 10 ? ? C4 A DG 10 ? ? 1.494 1.350 0.144 0.007 N 55 1 C5 A DG 10 ? ? C6 A DG 10 ? ? 1.347 1.419 -0.072 0.010 N 56 1 C6 A DG 10 ? ? N1 A DG 10 ? ? 1.331 1.391 -0.060 0.007 N 57 1 C5 A DG 10 ? ? N7 A DG 10 ? ? 1.343 1.388 -0.045 0.006 N 58 1 N9 A DG 10 ? ? C4 A DG 10 ? ? 1.424 1.375 0.049 0.008 N 59 1 C2 A DG 10 ? ? N2 A DG 10 ? ? 1.425 1.341 0.084 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.17 108.30 3.87 0.30 N 2 1 N1 A DC 1 ? ? C2 A DC 1 ? ? N3 A DC 1 ? ? 124.77 119.20 5.57 0.70 N 3 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 118.71 121.90 -3.19 0.40 N 4 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 114.02 118.90 -4.88 0.60 N 5 1 "O3'" A DC 1 ? ? P A DC 2 ? ? OP2 A DC 2 ? ? 125.92 110.50 15.42 1.10 Y 6 1 "O5'" A DC 2 ? ? P A DC 2 ? ? OP2 A DC 2 ? ? 97.44 105.70 -8.26 0.90 N 7 1 "C5'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 102.25 114.10 -11.85 1.80 N 8 1 "C1'" A DC 2 ? ? "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? 102.11 110.10 -7.99 1.00 N 9 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 115.68 108.30 7.38 0.30 N 10 1 "O3'" A 1AP 3 ? ? P A DG 4 ? ? OP2 A DG 4 ? ? 136.89 110.50 26.39 1.10 Y 11 1 "O3'" A 1AP 3 ? ? P A DG 4 ? ? OP1 A DG 4 ? ? 76.52 105.20 -28.68 2.20 Y 12 1 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 109.70 106.00 3.70 0.60 N 13 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.41 108.30 2.11 0.30 N 14 1 N1 A DG 4 ? ? C2 A DG 4 ? ? N3 A DG 4 ? ? 119.99 123.90 -3.91 0.60 N 15 1 C2 A DG 4 ? ? N3 A DG 4 ? ? C4 A DG 4 ? ? 115.18 111.90 3.28 0.50 N 16 1 C4 A DG 4 ? ? C5 A DG 4 ? ? N7 A DG 4 ? ? 107.64 110.80 -3.16 0.40 N 17 1 C5 A DG 4 ? ? N7 A DG 4 ? ? C8 A DG 4 ? ? 107.49 104.30 3.19 0.50 N 18 1 "O3'" A DG 4 ? ? P A DT 5 ? ? OP2 A DT 5 ? ? 118.26 110.50 7.76 1.10 Y 19 1 "O4'" A DT 5 ? ? "C4'" A DT 5 ? ? "C3'" A DT 5 ? ? 110.85 106.00 4.85 0.60 N 20 1 "C2'" A DT 5 ? ? "C3'" A DT 5 ? ? "O3'" A DT 5 ? ? 82.57 109.40 -26.83 2.50 N 21 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.65 108.30 2.35 0.30 N 22 1 C2 A DT 5 ? ? N3 A DT 5 ? ? C4 A DT 5 ? ? 132.01 127.20 4.81 0.60 N 23 1 "O3'" A DT 5 ? ? P A DA 6 ? ? OP1 A DA 6 ? ? 90.29 105.20 -14.91 2.20 Y 24 1 "O5'" A DA 6 ? ? P A DA 6 ? ? OP1 A DA 6 ? ? 98.26 105.70 -7.44 0.90 N 25 1 "O5'" A DA 6 ? ? P A DA 6 ? ? OP2 A DA 6 ? ? 122.22 110.70 11.52 1.20 N 26 1 "C1'" A DA 6 ? ? "O4'" A DA 6 ? ? "C4'" A DA 6 ? ? 117.68 110.30 7.38 0.70 N 27 1 C6 A DA 6 ? ? N1 A DA 6 ? ? C2 A DA 6 ? ? 113.63 118.60 -4.97 0.60 N 28 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 133.66 129.30 4.36 0.50 N 29 1 C2 A DA 6 ? ? N3 A DA 6 ? ? C4 A DA 6 ? ? 115.49 110.60 4.89 0.50 N 30 1 N3 A DA 6 ? ? C4 A DA 6 ? ? C5 A DA 6 ? ? 122.31 126.80 -4.49 0.70 N 31 1 N7 A DA 6 ? ? C8 A DA 6 ? ? N9 A DA 6 ? ? 116.89 113.80 3.09 0.50 N 32 1 "O3'" A DA 6 ? ? P A DC 7 ? ? OP2 A DC 7 ? ? 124.09 110.50 13.59 1.10 Y 33 1 "O3'" A DA 6 ? ? P A DC 7 ? ? OP1 A DC 7 ? ? 78.29 105.20 -26.91 2.20 Y 34 1 "O5'" A DC 7 ? ? P A DC 7 ? ? OP1 A DC 7 ? ? 129.28 110.70 18.58 1.20 N 35 1 "O5'" A DC 7 ? ? P A DC 7 ? ? OP2 A DC 7 ? ? 98.33 105.70 -7.37 0.90 N 36 1 "C5'" A DC 7 ? ? "C4'" A DC 7 ? ? "O4'" A DC 7 ? ? 86.73 109.30 -22.57 1.90 N 37 1 C2 A DC 7 ? ? N3 A DC 7 ? ? C4 A DC 7 ? ? 114.26 119.90 -5.64 0.50 N 38 1 "C1'" A DT 8 ? ? "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? 115.51 110.30 5.21 0.70 N 39 1 "O3'" A DT 8 ? ? P A DG 9 ? ? "O5'" A DG 9 ? ? 123.19 104.00 19.19 1.90 Y 40 1 "O3'" A DT 8 ? ? P A DG 9 ? ? OP2 A DG 9 ? ? 123.49 110.50 12.99 1.10 Y 41 1 "O3'" A DT 8 ? ? P A DG 9 ? ? OP1 A DG 9 ? ? 83.07 105.20 -22.13 2.20 Y 42 1 "O5'" A DG 9 ? ? P A DG 9 ? ? OP2 A DG 9 ? ? 97.11 105.70 -8.59 0.90 N 43 1 "O4'" A DG 9 ? ? "C4'" A DG 9 ? ? "C3'" A DG 9 ? ? 100.16 104.50 -4.34 0.40 N 44 1 "C5'" A DG 9 ? ? "C4'" A DG 9 ? ? "O4'" A DG 9 ? ? 96.91 109.30 -12.39 1.90 N 45 1 "C3'" A DG 9 ? ? "C2'" A DG 9 ? ? "C1'" A DG 9 ? ? 94.24 102.40 -8.16 0.80 N 46 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? "C2'" A DG 9 ? ? 112.31 106.80 5.51 0.50 N 47 1 C6 A DG 9 ? ? C5 A DG 9 ? ? N7 A DG 9 ? ? 126.10 130.40 -4.30 0.60 N 48 1 "O3'" A DG 9 ? ? P A DG 10 ? ? "O5'" A DG 10 ? ? 117.97 104.00 13.97 1.90 Y 49 1 "O5'" A DG 10 ? ? P A DG 10 ? ? OP1 A DG 10 ? ? 91.56 105.70 -14.14 0.90 N 50 1 "C5'" A DG 10 ? ? "C4'" A DG 10 ? ? "O4'" A DG 10 ? ? 121.80 109.80 12.00 1.10 N 51 1 "C1'" A DG 10 ? ? "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? 104.03 110.10 -6.07 1.00 N 52 1 "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? "O3'" A DG 10 ? ? 85.38 109.70 -24.32 2.50 N 53 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.32 108.30 2.02 0.30 N 54 1 C6 A DG 10 ? ? N1 A DG 10 ? ? C2 A DG 10 ? ? 132.11 125.10 7.01 0.60 N 55 1 C2 A DG 10 ? ? N3 A DG 10 ? ? C4 A DG 10 ? ? 108.62 111.90 -3.28 0.50 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA A 6 ? ? 0.086 'SIDE CHAIN' 2 1 DC A 7 ? ? 0.128 'SIDE CHAIN' 3 1 DG A 9 ? ? 0.083 'SIDE CHAIN' 4 1 DG A 10 ? ? 0.120 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1AP N1 N Y N 1 1AP C2 C Y N 2 1AP C4 C Y N 3 1AP C5 C Y N 4 1AP C6 C Y N 5 1AP C8 C Y N 6 1AP N2 N N N 7 1AP N3 N Y N 8 1AP N9 N Y N 9 1AP N7 N Y N 10 1AP N6 N N N 11 1AP P P N N 12 1AP OP1 O N N 13 1AP OP2 O N N 14 1AP "O5'" O N N 15 1AP "C5'" C N N 16 1AP "C4'" C N R 17 1AP "O4'" O N N 18 1AP "C1'" C N R 19 1AP "C2'" C N N 20 1AP "C3'" C N S 21 1AP "O3'" O N N 22 1AP OP3 O N N 23 1AP H81 H N N 24 1AP HN21 H N N 25 1AP HN22 H N N 26 1AP HN61 H N N 27 1AP HN62 H N N 28 1AP H1P H N N 29 1AP H52 H N N 30 1AP H51 H N N 31 1AP H4 H N N 32 1AP H11 H N N 33 1AP H21 H N N 34 1AP H22 H N N 35 1AP H31 H N N 36 1AP HO31 H N N 37 1AP H3P H N N 38 CA CA CA N N 39 DA OP3 O N N 40 DA P P N N 41 DA OP1 O N N 42 DA OP2 O N N 43 DA "O5'" O N N 44 DA "C5'" C N N 45 DA "C4'" C N R 46 DA "O4'" O N N 47 DA "C3'" C N S 48 DA "O3'" O N N 49 DA "C2'" C N N 50 DA "C1'" C N R 51 DA N9 N Y N 52 DA C8 C Y N 53 DA N7 N Y N 54 DA C5 C Y N 55 DA C6 C Y N 56 DA N6 N N N 57 DA N1 N Y N 58 DA C2 C Y N 59 DA N3 N Y N 60 DA C4 C Y N 61 DA HOP3 H N N 62 DA HOP2 H N N 63 DA "H5'" H N N 64 DA "H5''" H N N 65 DA "H4'" H N N 66 DA "H3'" H N N 67 DA "HO3'" H N N 68 DA "H2'" H N N 69 DA "H2''" H N N 70 DA "H1'" H N N 71 DA H8 H N N 72 DA H61 H N N 73 DA H62 H N N 74 DA H2 H N N 75 DC OP3 O N N 76 DC P P N N 77 DC OP1 O N N 78 DC OP2 O N N 79 DC "O5'" O N N 80 DC "C5'" C N N 81 DC "C4'" C N R 82 DC "O4'" O N N 83 DC "C3'" C N S 84 DC "O3'" O N N 85 DC "C2'" C N N 86 DC "C1'" C N R 87 DC N1 N N N 88 DC C2 C N N 89 DC O2 O N N 90 DC N3 N N N 91 DC C4 C N N 92 DC N4 N N N 93 DC C5 C N N 94 DC C6 C N N 95 DC HOP3 H N N 96 DC HOP2 H N N 97 DC "H5'" H N N 98 DC "H5''" H N N 99 DC "H4'" H N N 100 DC "H3'" H N N 101 DC "HO3'" H N N 102 DC "H2'" H N N 103 DC "H2''" H N N 104 DC "H1'" H N N 105 DC H41 H N N 106 DC H42 H N N 107 DC H5 H N N 108 DC H6 H N N 109 DG OP3 O N N 110 DG P P N N 111 DG OP1 O N N 112 DG OP2 O N N 113 DG "O5'" O N N 114 DG "C5'" C N N 115 DG "C4'" C N R 116 DG "O4'" O N N 117 DG "C3'" C N S 118 DG "O3'" O N N 119 DG "C2'" C N N 120 DG "C1'" C N R 121 DG N9 N Y N 122 DG C8 C Y N 123 DG N7 N Y N 124 DG C5 C Y N 125 DG C6 C N N 126 DG O6 O N N 127 DG N1 N N N 128 DG C2 C N N 129 DG N2 N N N 130 DG N3 N N N 131 DG C4 C Y N 132 DG HOP3 H N N 133 DG HOP2 H N N 134 DG "H5'" H N N 135 DG "H5''" H N N 136 DG "H4'" H N N 137 DG "H3'" H N N 138 DG "HO3'" H N N 139 DG "H2'" H N N 140 DG "H2''" H N N 141 DG "H1'" H N N 142 DG H8 H N N 143 DG H1 H N N 144 DG H21 H N N 145 DG H22 H N N 146 DT OP3 O N N 147 DT P P N N 148 DT OP1 O N N 149 DT OP2 O N N 150 DT "O5'" O N N 151 DT "C5'" C N N 152 DT "C4'" C N R 153 DT "O4'" O N N 154 DT "C3'" C N S 155 DT "O3'" O N N 156 DT "C2'" C N N 157 DT "C1'" C N R 158 DT N1 N N N 159 DT C2 C N N 160 DT O2 O N N 161 DT N3 N N N 162 DT C4 C N N 163 DT O4 O N N 164 DT C5 C N N 165 DT C7 C N N 166 DT C6 C N N 167 DT HOP3 H N N 168 DT HOP2 H N N 169 DT "H5'" H N N 170 DT "H5''" H N N 171 DT "H4'" H N N 172 DT "H3'" H N N 173 DT "HO3'" H N N 174 DT "H2'" H N N 175 DT "H2''" H N N 176 DT "H1'" H N N 177 DT H3 H N N 178 DT H71 H N N 179 DT H72 H N N 180 DT H73 H N N 181 DT H6 H N N 182 HOH O O N N 183 HOH H1 H N N 184 HOH H2 H N N 185 NA NA NA N N 186 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1AP N1 C2 sing Y N 1 1AP N1 C6 doub Y N 2 1AP C2 N2 sing N N 3 1AP C2 N3 doub Y N 4 1AP C4 C5 doub Y N 5 1AP C4 N3 sing Y N 6 1AP C4 N9 sing Y N 7 1AP C5 C6 sing Y N 8 1AP C5 N7 sing Y N 9 1AP C6 N6 sing N N 10 1AP C8 N9 sing Y N 11 1AP C8 N7 doub Y N 12 1AP C8 H81 sing N N 13 1AP N2 HN21 sing N N 14 1AP N2 HN22 sing N N 15 1AP N9 "C1'" sing N N 16 1AP N6 HN61 sing N N 17 1AP N6 HN62 sing N N 18 1AP P OP1 sing N N 19 1AP P OP2 doub N N 20 1AP P "O5'" sing N N 21 1AP P OP3 sing N N 22 1AP OP1 H1P sing N N 23 1AP "O5'" "C5'" sing N N 24 1AP "C5'" "C4'" sing N N 25 1AP "C5'" H52 sing N N 26 1AP "C5'" H51 sing N N 27 1AP "C4'" "O4'" sing N N 28 1AP "C4'" "C3'" sing N N 29 1AP "C4'" H4 sing N N 30 1AP "O4'" "C1'" sing N N 31 1AP "C1'" "C2'" sing N N 32 1AP "C1'" H11 sing N N 33 1AP "C2'" "C3'" sing N N 34 1AP "C2'" H21 sing N N 35 1AP "C2'" H22 sing N N 36 1AP "C3'" "O3'" sing N N 37 1AP "C3'" H31 sing N N 38 1AP "O3'" HO31 sing N N 39 1AP OP3 H3P sing N N 40 DA OP3 P sing N N 41 DA OP3 HOP3 sing N N 42 DA P OP1 doub N N 43 DA P OP2 sing N N 44 DA P "O5'" sing N N 45 DA OP2 HOP2 sing N N 46 DA "O5'" "C5'" sing N N 47 DA "C5'" "C4'" sing N N 48 DA "C5'" "H5'" sing N N 49 DA "C5'" "H5''" sing N N 50 DA "C4'" "O4'" sing N N 51 DA "C4'" "C3'" sing N N 52 DA "C4'" "H4'" sing N N 53 DA "O4'" "C1'" sing N N 54 DA "C3'" "O3'" sing N N 55 DA "C3'" "C2'" sing N N 56 DA "C3'" "H3'" sing N N 57 DA "O3'" "HO3'" sing N N 58 DA "C2'" "C1'" sing N N 59 DA "C2'" "H2'" sing N N 60 DA "C2'" "H2''" sing N N 61 DA "C1'" N9 sing N N 62 DA "C1'" "H1'" sing N N 63 DA N9 C8 sing Y N 64 DA N9 C4 sing Y N 65 DA C8 N7 doub Y N 66 DA C8 H8 sing N N 67 DA N7 C5 sing Y N 68 DA C5 C6 sing Y N 69 DA C5 C4 doub Y N 70 DA C6 N6 sing N N 71 DA C6 N1 doub Y N 72 DA N6 H61 sing N N 73 DA N6 H62 sing N N 74 DA N1 C2 sing Y N 75 DA C2 N3 doub Y N 76 DA C2 H2 sing N N 77 DA N3 C4 sing Y N 78 DC OP3 P sing N N 79 DC OP3 HOP3 sing N N 80 DC P OP1 doub N N 81 DC P OP2 sing N N 82 DC P "O5'" sing N N 83 DC OP2 HOP2 sing N N 84 DC "O5'" "C5'" sing N N 85 DC "C5'" "C4'" sing N N 86 DC "C5'" "H5'" sing N N 87 DC "C5'" "H5''" sing N N 88 DC "C4'" "O4'" sing N N 89 DC "C4'" "C3'" sing N N 90 DC "C4'" "H4'" sing N N 91 DC "O4'" "C1'" sing N N 92 DC "C3'" "O3'" sing N N 93 DC "C3'" "C2'" sing N N 94 DC "C3'" "H3'" sing N N 95 DC "O3'" "HO3'" sing N N 96 DC "C2'" "C1'" sing N N 97 DC "C2'" "H2'" sing N N 98 DC "C2'" "H2''" sing N N 99 DC "C1'" N1 sing N N 100 DC "C1'" "H1'" sing N N 101 DC N1 C2 sing N N 102 DC N1 C6 sing N N 103 DC C2 O2 doub N N 104 DC C2 N3 sing N N 105 DC N3 C4 doub N N 106 DC C4 N4 sing N N 107 DC C4 C5 sing N N 108 DC N4 H41 sing N N 109 DC N4 H42 sing N N 110 DC C5 C6 doub N N 111 DC C5 H5 sing N N 112 DC C6 H6 sing N N 113 DG OP3 P sing N N 114 DG OP3 HOP3 sing N N 115 DG P OP1 doub N N 116 DG P OP2 sing N N 117 DG P "O5'" sing N N 118 DG OP2 HOP2 sing N N 119 DG "O5'" "C5'" sing N N 120 DG "C5'" "C4'" sing N N 121 DG "C5'" "H5'" sing N N 122 DG "C5'" "H5''" sing N N 123 DG "C4'" "O4'" sing N N 124 DG "C4'" "C3'" sing N N 125 DG "C4'" "H4'" sing N N 126 DG "O4'" "C1'" sing N N 127 DG "C3'" "O3'" sing N N 128 DG "C3'" "C2'" sing N N 129 DG "C3'" "H3'" sing N N 130 DG "O3'" "HO3'" sing N N 131 DG "C2'" "C1'" sing N N 132 DG "C2'" "H2'" sing N N 133 DG "C2'" "H2''" sing N N 134 DG "C1'" N9 sing N N 135 DG "C1'" "H1'" sing N N 136 DG N9 C8 sing Y N 137 DG N9 C4 sing Y N 138 DG C8 N7 doub Y N 139 DG C8 H8 sing N N 140 DG N7 C5 sing Y N 141 DG C5 C6 sing N N 142 DG C5 C4 doub Y N 143 DG C6 O6 doub N N 144 DG C6 N1 sing N N 145 DG N1 C2 sing N N 146 DG N1 H1 sing N N 147 DG C2 N2 sing N N 148 DG C2 N3 doub N N 149 DG N2 H21 sing N N 150 DG N2 H22 sing N N 151 DG N3 C4 sing N N 152 DT OP3 P sing N N 153 DT OP3 HOP3 sing N N 154 DT P OP1 doub N N 155 DT P OP2 sing N N 156 DT P "O5'" sing N N 157 DT OP2 HOP2 sing N N 158 DT "O5'" "C5'" sing N N 159 DT "C5'" "C4'" sing N N 160 DT "C5'" "H5'" sing N N 161 DT "C5'" "H5''" sing N N 162 DT "C4'" "O4'" sing N N 163 DT "C4'" "C3'" sing N N 164 DT "C4'" "H4'" sing N N 165 DT "O4'" "C1'" sing N N 166 DT "C3'" "O3'" sing N N 167 DT "C3'" "C2'" sing N N 168 DT "C3'" "H3'" sing N N 169 DT "O3'" "HO3'" sing N N 170 DT "C2'" "C1'" sing N N 171 DT "C2'" "H2'" sing N N 172 DT "C2'" "H2''" sing N N 173 DT "C1'" N1 sing N N 174 DT "C1'" "H1'" sing N N 175 DT N1 C2 sing N N 176 DT N1 C6 sing N N 177 DT C2 O2 doub N N 178 DT C2 N3 sing N N 179 DT N3 C4 sing N N 180 DT N3 H3 sing N N 181 DT C4 O4 doub N N 182 DT C4 C5 sing N N 183 DT C5 C7 sing N N 184 DT C5 C6 doub N N 185 DT C7 H71 sing N N 186 DT C7 H72 sing N N 187 DT C7 H73 sing N N 188 DT C6 H6 sing N N 189 HOH O H1 sing N N 190 HOH O H2 sing N N 191 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1S1K 'double helix' 1S1K 'b-form double helix' 1S1K 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 10 12_545 0.772 -0.507 -0.044 0.319 -0.481 -3.917 1 A_DC1:DG10_A A 1 ? A 10 ? 19 1 1 A DC 2 1_555 A DG 9 12_545 0.286 -0.077 0.246 -3.987 -8.813 -5.656 2 A_DC2:DG9_A A 2 ? A 9 ? 19 1 1 A 1AP 3 1_555 A DT 8 12_545 0.131 0.006 -0.239 -4.157 -5.707 -2.518 3 A_1AP3:DT8_A A 3 ? A 8 ? ? ? 1 A DG 4 1_555 A DC 7 12_545 -0.331 -0.017 0.212 -1.850 -11.463 -3.866 4 A_DG4:DC7_A A 4 ? A 7 ? 19 1 1 A DT 5 1_555 A DA 6 12_545 -0.171 -0.178 0.330 -1.504 -11.056 -2.231 5 A_DT5:DA6_A A 5 ? A 6 ? 20 1 1 A DA 6 1_555 A DT 5 12_545 0.171 -0.178 0.330 1.504 -11.056 -2.231 6 A_DA6:DT5_A A 6 ? A 5 ? 20 1 1 A DC 7 1_555 A DG 4 12_545 0.331 -0.017 0.212 1.850 -11.463 -3.866 7 A_DC7:DG4_A A 7 ? A 4 ? 19 1 1 A DT 8 1_555 A 1AP 3 12_545 -0.131 0.006 -0.239 4.157 -5.707 -2.518 8 A_DT8:1AP3_A A 8 ? A 3 ? ? ? 1 A DG 9 1_555 A DC 2 12_545 -0.286 -0.077 0.246 3.987 -8.813 -5.656 9 A_DG9:DC2_A A 9 ? A 2 ? 19 1 1 A DG 10 1_555 A DC 1 12_545 -0.772 -0.507 -0.044 -0.319 -0.481 -3.917 10 A_DG10:DC1_A A 10 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 10 12_545 A DC 2 1_555 A DG 9 12_545 -0.392 0.060 3.403 1.394 7.566 33.233 -1.148 0.900 3.317 13.012 -2.398 34.087 1 AA_DC1DC2:DG9DG10_AA A 1 ? A 10 ? A 2 ? A 9 ? 1 A DC 2 1_555 A DG 9 12_545 A 1AP 3 1_555 A DT 8 12_545 0.231 0.780 3.398 4.349 8.156 39.026 0.143 0.193 3.491 12.005 -6.402 40.064 2 AA_DC21AP3:DT8DG9_AA A 2 ? A 9 ? A 3 ? A 8 ? 1 A 1AP 3 1_555 A DT 8 12_545 A DG 4 1_555 A DC 7 12_545 0.533 -0.116 3.243 -4.180 2.881 31.633 -0.719 -1.705 3.126 5.242 7.607 32.028 3 AA_1AP3DG4:DC7DT8_AA A 3 ? A 8 ? A 4 ? A 7 ? 1 A DG 4 1_555 A DC 7 12_545 A DT 5 1_555 A DA 6 12_545 -0.021 -0.755 3.351 -2.195 3.072 29.059 -2.164 -0.439 3.248 6.090 4.350 29.298 4 AA_DG4DT5:DA6DC7_AA A 4 ? A 7 ? A 5 ? A 6 ? 1 A DT 5 1_555 A DA 6 12_545 A DA 6 1_555 A DT 5 12_545 0.000 0.368 3.246 0.000 2.834 45.629 0.228 0.000 3.262 3.650 0.000 45.713 5 AA_DT5DA6:DT5DA6_AA A 5 ? A 6 ? A 6 ? A 5 ? 1 A DA 6 1_555 A DT 5 12_545 A DC 7 1_555 A DG 4 12_545 0.021 -0.755 3.351 2.195 3.072 29.059 -2.164 0.439 3.248 6.090 -4.350 29.298 6 AA_DA6DC7:DG4DT5_AA A 6 ? A 5 ? A 7 ? A 4 ? 1 A DC 7 1_555 A DG 4 12_545 A DT 8 1_555 A 1AP 3 12_545 -0.533 -0.116 3.243 4.180 2.881 31.633 -0.719 1.705 3.126 5.242 -7.607 32.028 7 AA_DC7DT8:1AP3DG4_AA A 7 ? A 4 ? A 8 ? A 3 ? 1 A DT 8 1_555 A 1AP 3 12_545 A DG 9 1_555 A DC 2 12_545 -0.231 0.780 3.398 -4.349 8.156 39.026 0.143 -0.193 3.491 12.005 6.402 40.064 8 AA_DT8DG9:DC21AP3_AA A 8 ? A 3 ? A 9 ? A 2 ? 1 A DG 9 1_555 A DC 2 12_545 A DG 10 1_555 A DC 1 12_545 0.392 0.060 3.403 -1.394 7.566 33.233 -1.148 -0.900 3.317 13.012 2.398 34.087 9 AA_DG9DG10:DC1DC2_AA A 9 ? A 2 ? A 10 ? A 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 'SODIUM ION' NA 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1P4Z _pdbx_initial_refinement_model.details ? #